Citrus Sinensis ID: 001318
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1101 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | yes | no | 0.991 | 0.965 | 0.818 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.981 | 0.965 | 0.803 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.989 | 0.959 | 0.673 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.952 | 0.927 | 0.608 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.954 | 0.948 | 0.587 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.245 | 0.199 | 0.292 | 3e-18 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.424 | 0.306 | 0.224 | 8e-15 | |
| Q54KL5 | 335 | WD repeat-containing prot | yes | no | 0.188 | 0.617 | 0.254 | 4e-13 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.390 | 0.255 | 0.219 | 2e-11 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.430 | 0.376 | 0.209 | 2e-11 |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function desciption |
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Score = 1926 bits (4989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 933/1140 (81%), Positives = 1014/1140 (88%), Gaps = 48/1140 (4%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+NSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCKNPRPNPDIKTLFVDH+CG PNGARAPSP NNPLLG +PKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 287
PT +PVPTPLAGWMS+P +V HPAVS GAI LG PSIPAA LKHPRTPPTN S+DYPS D
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPSAD 299
Query: 288 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 347
S+H+SKRTRP+GISDE+NL VN+LP+SF+G +H HS AF P+DLPKTV RTL+QGSS
Sbjct: 300 SEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHS--PAFKAPDDLPKTVARTLSQGSS 357
Query: 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 407
PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL CSMPLQAALVK+P
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 467
VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDI+FS PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527
CVITCGDDKTIKVWDA G K++ FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 528 DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 561
DN+GSRVDY+APGRWCTTMAYSADGTR TYQGF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 621
RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD+VQLLT+ID DGGL ASPRIRFNK+G LLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 622 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 681
VS N+N IKI+A SDG+RLL TFEN+ +SE+SKP I+ I+AAAAAAATSAG ADR
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENI------SSESSKPAINSIAAAAAAAATSAGHADR 711
Query: 682 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741
+A++VSI GMNGD R++ DVKP ITEESNDKSK+WKLTE+SEP+QCRSLRLPENLR KI
Sbjct: 712 SANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKI 771
Query: 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801
SRLIFTNSGNAILALASNAIHLLWKWQR ERN++GKATAS+ PQ WQP SGI+MTNDV +
Sbjct: 772 SRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTNDVAE 831
Query: 802 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 861
+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI
Sbjct: 832 TNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 891
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921
IAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGW
Sbjct: 892 IAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGW 951
Query: 922 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 981
EKQ+++ L +P GR +A SDTRVQFHQDQ HFLVVHETQLAI+ETTKLEC+KQW RES
Sbjct: 952 EKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRES 1011
Query: 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1041
APITHATFSCDSQLVYA F+DATVCVFS+ANL+LRCR+NPSAYLPA +S+SNVHPLVIA
Sbjct: 1012 LAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIA 1071
Query: 1042 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1101
AHPQEPN FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S P P VG S SDQ QR
Sbjct: 1072 AHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQPQR 1131
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1909 bits (4944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 916/1140 (80%), Positives = 1004/1140 (88%), Gaps = 59/1140 (5%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+ SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCKNPRPNPDIKTLFVDH+C PN ARAPSP NNPLLGSLPKA FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 287
PTP+PVPTPLAGWMS+P +V HPAVSGG I LG+PSI AALKHPRTPP+N +VDYPSGD
Sbjct: 241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSI-QAALKHPRTPPSNSAVDYPSGD 299
Query: 288 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 347
SDH+SKRTRP+GISDE++L VN+LP++F G +H H+ Q F P+DLPKTV RTL+QGSS
Sbjct: 300 SDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHN--QTFKAPDDLPKTVARTLSQGSS 357
Query: 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 407
PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL CSMPLQAALVK+P
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 467
VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDIAFS PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527
CV TCGDDKTIKVWDA G K+Y FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 528 DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 561
DN+GSRVDYEAPGRWCTTMAYSADGTR TYQGF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 621
RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD++QLLT+IDADGGL ASPRIRFNK+G LLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 622 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 681
VS NDN IK++A SDG+RLL T ENL +SE+SKP I+ I + +R
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENL------SSESSKPAINSIP-----------MVER 700
Query: 682 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741
AS+VSIPGMNGD R++ DVKP ITEESNDKSKVWKLTE+ EP+QCRSLRLPEN+R TKI
Sbjct: 701 PASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKI 760
Query: 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801
SRLIFTNSGNAILALASNAIHLLWKWQR +RN++GKATAS+ PQ WQP SGI+MTNDV +
Sbjct: 761 SRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAE 820
Query: 802 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 861
+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI
Sbjct: 821 TNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 880
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921
IAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGW
Sbjct: 881 IAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGW 940
Query: 922 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 981
EKQK++ LQIP GR+ ++ SDTRVQFHQDQ+HFLVVHETQLAI+ETTKLEC+KQW RES
Sbjct: 941 EKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRES 1000
Query: 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1041
+APITHATFSCDSQL+Y F+DAT+CVFS+ANL+LRCR+NPSAYLPA +S+SNVHPLVIA
Sbjct: 1001 AAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIA 1060
Query: 1042 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1101
AHPQE N FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S++ ATP VG S SDQ QR
Sbjct: 1061 AHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1120
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1578 bits (4087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 772/1147 (67%), Positives = 900/1147 (78%), Gaps = 58/1147 (5%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LE+ESGFFFNM+YFED V G WDDVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALDK D AKAV+ILVK+LKVFSTFNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
L NFRENEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCKNPRPNPDIKTLFVDHTCG PNGA PSP N L+GS+PK G FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKH--PRTPPTNP-SVDYP 284
PTPAP+ T LAGWM NP +V HP VS G IGLG+P+ + LK PR+PPTN S+DY
Sbjct: 241 PTPAPLTTSLAGWMPNP-SVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQ 299
Query: 285 SGDSDHLSKRTRPIGISDEIN-LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN 343
+ DS+ + KR RP GISD +N LPVNVLPV++ G SH+H+ +ST +DLPK V+R L+
Sbjct: 300 TADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHA---TYST-DDLPKNVSRILS 355
Query: 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV 403
QGS+ SMDFHPVQQT+LLVGTN+GDI +WEVGSRE+LV R+FKVWDL C++ LQA+L
Sbjct: 356 QGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLA 415
Query: 404 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 463
+ +VNRV+WSPDG L GVAYS+HIV IYSYHGG+++R HLEIDAH G VND+AFS P
Sbjct: 416 SEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQP 475
Query: 464 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523
N+QLCV+TCG+DKTIKVWDA G K + FEGHEAPVYSVCPH KENIQFIFSTA+DGKIK
Sbjct: 476 NQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIK 535
Query: 524 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQ 557
AWLYDN+GSRVDY+APGR CT+MAY ADGTR TY
Sbjct: 536 AWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYL 595
Query: 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 617
G KRS+GVVQFDT KN+FL AGD+F +KFWDMDSV LL+S A+GGLP+SP +R NK+G
Sbjct: 596 GLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEG 655
Query: 618 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS---KPTISPISAAAAAAAT 674
LLAVST DNGIKILA ++G R+L + N D+SR S P + ++
Sbjct: 656 TLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGM 715
Query: 675 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 734
S + +R+ + S+ G+NGD RSL DVKPRI +++ +KSK WKLTE+SE +Q R+LRLP+
Sbjct: 716 SLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDA-EKSKTWKLTEISERSQLRTLRLPD 774
Query: 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 794
L ++ +LI+TNSG AILALA NA H LWKWQ++ERN GKA ++V PQLWQP SG++
Sbjct: 775 TLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVL 834
Query: 795 MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 854
MTND + N E+ VPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFM PPPAAT LAF
Sbjct: 835 MTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAF 894
Query: 855 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 914
HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH KR+TGLAFS+ LNVLVSSGADSQLC
Sbjct: 895 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLC 954
Query: 915 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 974
VWS DGWEKQ ++ +QIP+G +P + TRVQFHQDQIH LVVH +QLAI+E KLE +K
Sbjct: 955 VWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMK 1014
Query: 975 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1034
QW+P+ESS +T A +SCDSQ +YA F D +V + +A L+L+CRI P++YLP+ SS
Sbjct: 1015 QWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLPSN-PSSR 1073
Query: 1035 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGS 1094
V+P +AAHP EPN+FA+GL+DGGVHV EP EGKWG+ P +NG+ S+ + P
Sbjct: 1074 VYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSAP----- 1128
Query: 1095 GSDQAQR 1101
GSDQ R
Sbjct: 1129 GSDQQPR 1135
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1348 bits (3490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/1123 (60%), Positives = 831/1123 (73%), Gaps = 74/1123 (6%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFN+KYFE++ G WD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALD++DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSARSIM ELKKLIEANPLFR+KL FP+ K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH-GPF 226
WQHQLCKNPRPNPDIKTLF+DH+C NGARA +P N P + ++ + F PLG H GPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLP-VAAVARPSNFVPLGVHGGPF 239
Query: 227 QP--TPAPVPTPLAGWMSNP-PTVTHPAVSGGAIGLGSPSIPAAA--LKHPRTPPTNPSV 281
Q PAP LAGWM+NP P+ + P SG P P+ LKHPR P + +
Sbjct: 240 QSNPAPAPNANALAGWMANPNPSSSVP--SGVVAASPFPMQPSQVNELKHPRAPSNSLGL 297
Query: 282 -DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTR 340
DY S D + L KR R S+E+ P +HSH A + +DLP+ V
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYP-------------AHSHPPA--SLDDLPRNVVS 342
Query: 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 400
T+ QGS +SMDFHP TLL VG + G++ LWEVGSRE++V FK+W++ ACS+ Q
Sbjct: 343 TIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQG 402
Query: 401 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 460
++VK+P +SV RV WSPDG+L GV++++H++ +Y+Y G D +RQHLEIDAHVG VND+AF
Sbjct: 403 SIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAF 461
Query: 461 SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 520
+HPNKQ+CV+TCGDDK IKVWD + G K + FEGHEAPVYS+CPH KENIQFIFSTALDG
Sbjct: 462 AHPNKQMCVVTCGDDKLIKVWDLS-GKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDG 520
Query: 521 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------R 554
KIKAWLYDN+GSRVDY+APG+WCTTM YSADG+ R
Sbjct: 521 KIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKR 580
Query: 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 614
TY GFRK+S GVVQFDTT+NRFLA G+D IKFW+MD+ LLT ++A+GGLP PR+RFN
Sbjct: 581 TYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFN 640
Query: 615 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT 674
KDG LLAV+T DNG KILA +DG+R LR FE +++AS+ S + K + S ++++ + A
Sbjct: 641 KDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIG 700
Query: 675 SAGLADRAASMVSIPGMNG-DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 733
D + P NG + S KPR +S DKSK +LTE+ +P QCR + +P
Sbjct: 701 KIEHMDAGSPARPTPIPNGIEAMSRTMEKPR-NLDSVDKSKPLELTEIVDPTQCRQVTMP 759
Query: 734 ENLRA-TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 792
++ + +K++RL++TNSG +LAL SN + LWKW R E+N +GKATASV PQ WQP SG
Sbjct: 760 DSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG 819
Query: 793 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 852
++M NDV + NPE +VPC ALSKNDSYVMSA GGK+SLFNMMTFK M TFMPPPPA+TFL
Sbjct: 820 LLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFL 878
Query: 853 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 912
AFHPQDNNIIAIGM+DSSI IYNVRVDEVK+KLKGH K ITGLAFS ALN+LVSSGAD+Q
Sbjct: 879 AFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQ 938
Query: 913 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 972
L W++D WEK+K+ +Q+P G+ P DTRVQFH DQI LV HETQLAI++ +K+EC
Sbjct: 939 LFFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMEC 996
Query: 973 VKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV- 1030
+ +WVP+E+ S+PIT A++SC+SQLVYA F D + VF A +L+LRCRI PSAY+P
Sbjct: 997 IHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTP 1056
Query: 1031 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1073
+S+ + P VI AHPQEPN+ A+GLSDG V V EP E +WGV
Sbjct: 1057 NSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1305 bits (3377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 665/1132 (58%), Positives = 815/1132 (71%), Gaps = 81/1132 (7%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LE+ESGFFFN KYF+++V G WDDVE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALD+ ++AKAVEILV+DL+VFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
L+NFRENEQLSKYGDTK+AR IML ELKKLIEANPLFRDKL FP L++SRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH-GPF 226
WQHQLCKNPRPNPDIKTLF DHTC PNG APS N P+ +L K +P LG H
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVT-TLTKPAAYPSLGPHVPFP 239
Query: 227 QPTPAPVPTPLAGWM--SNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPS-VDY 283
A LA WM ++ + AV A+ + P + LK PRTPP P VDY
Sbjct: 240 PGPAAANAGALASWMAAASGASAVQAAVVTPAL-MPQPQNQMSILKRPRTPPATPGIVDY 298
Query: 284 PSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN 343
+ D + L KR RP +E+ P QA + EDLP L+
Sbjct: 299 QNPDHE-LMKRLRPAPSVEEVTYPA--------------PRQQAPWSLEDLPTKAALALH 343
Query: 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV 403
QGS+ SM+F+P+Q TLLLVG+ G+I LWE+ +RERLV R FK+WD+ CS QA +
Sbjct: 344 QGSTVTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403
Query: 404 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 463
K+ +SV RV WSPDG+ GVA+++H++Q+Y++ G +++RQH EIDAHVG VND+AF++P
Sbjct: 404 KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463
Query: 464 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523
N+QLCVITCGDDK IKVWD + G K + FEGH+APVYS+CPH+KENIQFIFSTA+DGKIK
Sbjct: 464 NRQLCVITCGDDKLIKVWDVS-GRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522
Query: 524 AWLYDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------RTYQ 557
AWLYDNLGSRVDY+APG+WCT M YSADGT RTY+
Sbjct: 523 AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582
Query: 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 617
F+K+ GVVQFDT+KN FLA G+D IKFWDM+++ +LTS DA+GGLPA P +RFNKDG
Sbjct: 583 EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDG 642
Query: 618 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 677
LLAV+T DNG KILA G R LR E A + RT + K + A A+
Sbjct: 643 NLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVDFK------AVPGAPVASVNC 696
Query: 678 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL- 736
+R + + +NG + K RI ++S DK K W+L E+ +P+QC LP+
Sbjct: 697 KVERGSPVRHSQMLNG----VDPSKSRI-DDSTDKPKSWQLAEILDPSQCFQATLPDTAG 751
Query: 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796
+TK+ +L++TNSG ILAL SN I LWKW E+N SGKATA+V PQ WQP SG++MT
Sbjct: 752 SSTKVVQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMT 811
Query: 797 NDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 856
NDV+ N E A PC ALSKNDSYVMSA+GGK+SLFNMMTFK M TFMPPPPA+TFLAFHP
Sbjct: 812 NDVSGVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHP 871
Query: 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
QDNN+IAIGM+DS+I IYNVRVDEVKSKLKGH KRITGLAFS ALN+LVSSGAD+Q+C W
Sbjct: 872 QDNNVIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFW 931
Query: 917 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW 976
S D WEK+K+ +Q+P G+ A DTRVQFH DQ+ LVVHETQLA+F+ +K+EC++QW
Sbjct: 932 SIDTWEKRKSVAIQMPAGK--AANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQW 989
Query: 977 VPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1035
+P++S SAPI+ A ++C+SQL+Y F D + VF A +L+LRCRI+PSAYLP G + +
Sbjct: 990 IPQDSLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQG--NQGL 1047
Query: 1036 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP---VDNGSTSS 1084
PLV+AAHPQ+PN+FA+GL+DG V + EP E EGKWG+ PP +++ ST+S
Sbjct: 1048 SPLVVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINSPSTTS 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 135/325 (41%), Gaps = 55/325 (16%)
Query: 337 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--GA 393
T T+TL GSS +S+ F P Q V + GD + K+WD G
Sbjct: 958 TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000
Query: 394 CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG 453
C+ L+ G SV V +SPDG ++I+ G Q LE H G
Sbjct: 1001 CTQTLEG-----HGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASG-TCTQTLE--GHGG 1052
Query: 454 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 513
V + FS P+ Q V + DD TIK+WDA +G EGH V+SV + Q +
Sbjct: 1053 WVQSVVFS-PDGQR-VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVA--FSPDGQRV 1108
Query: 514 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV------- 566
S ++DG IK W + E G W ++A+S DG R G ++ +
Sbjct: 1109 ASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGT 1168
Query: 567 --------------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 612
V F R + D +IK WD S +++ GG S +
Sbjct: 1169 CTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQS--VA 1226
Query: 613 FNKDGCLLAVSTNDNGIKILATSDG 637
F+ DG +A ++DN IKI T+ G
Sbjct: 1227 FSPDGQRVASGSSDNTIKIWDTASG 1251
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 119/531 (22%), Positives = 215/531 (40%), Gaps = 64/531 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
SV V +SPDG LF S IV+ + G E+ L H VN + FS K L
Sbjct: 866 SVLTVAFSPDGKLFATGDSGGIVRFWEAATGKEL---LTCKGHNSWVNSVGFSQDGKMLA 922
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
+ DD+T+++WD ++G F+GH + V SV N + S + D ++ W
Sbjct: 923 --SGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVV--FSPNSLMLASGSSDQTVRLWDIS 978
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKF 587
+ ++ W ++A++ DG+ LA G D +++
Sbjct: 979 SGECLYIFQGHTGWVYSVAFNLDGS----------------------MLATGSGDQTVRL 1016
Query: 588 WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 647
WD+ S Q G + F+ DG +LA ++D +++ S G L T +
Sbjct: 1017 WDISSSQCFYIFQ--GHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSG-NCLYTLQG- 1072
Query: 648 AYDASRTSENSKPTISPISAAAAAAATS--AGLADRAAS--MVSIPGMNGDVRSLADVKP 703
TS SP A A+ L D ++ + ++ G VR L
Sbjct: 1073 -----HTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPN 1127
Query: 704 RITEESNDKSKVWKLTELSEPNQCRSLRLPEN-LRATKIS---RLIFTNSGNAILAL--- 756
+T + ++ +L ++S +L+ N + A S + + SG+ + L
Sbjct: 1128 GVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDI 1187
Query: 757 -ASNAIHLLW---KW-QRTERNSSGKATASVAP----QLWQPPSGIMMTNDVTDSNPEEA 807
+S +++L W N G AS + +LW+ S + T
Sbjct: 1188 SSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCL---CTFQGHTSW 1244
Query: 808 VPCFALSKNDSYVMSASGGK-ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 866
V + + S + S S K + L+++ + K + TF +AF+P D +++A G
Sbjct: 1245 VNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNP-DGSMLASGS 1303
Query: 867 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D +++++ + + +GH+ ++ + FS +L S D + +WS
Sbjct: 1304 GDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWS 1354
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 29/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
S++ V +SPDG A + ++I+ + G R ++ H G++DIA+S +K +C
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
+ DDKTIK+WD +G +GH+ V+ V + + N+ I S + D ++ W
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
N G CT M + T V F+ ++ D +++ W
Sbjct: 160 NTGE----------CTKMISAHSDPVT----------GVHFNRDGTLVVSGSYDGTVRIW 199
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D + QLL +I + G S ++F+ +G + T DN +++ + ++ + L+T+
Sbjct: 200 DTTTGQLLNTISTEDGKEVS-FVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTY 254
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 111/505 (21%), Positives = 200/505 (39%), Gaps = 75/505 (14%)
Query: 441 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500
E+++ ++ H GV I+ S + + + DKTIK+W + +G GHE VY
Sbjct: 1061 EMQERNRLEGHKDGVISISISRDGQ--TIASGSLDKTIKLW-SRDGRLFRTLNGHEDAVY 1117
Query: 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQG 558
SV + Q I S D IK W ++DGT +T G
Sbjct: 1118 SVS--FSPDGQTIASGGSDKTIKLW----------------------QTSDGTLLKTITG 1153
Query: 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 618
++++ V F +A D SIK WD S QLL ++ G +RF+ DG
Sbjct: 1154 -HEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLT--GHSAGVITVRFSPDGQ 1210
Query: 619 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 678
+A + D +K+ DG +LL+T + S + P +++A+A
Sbjct: 1211 TIAAGSEDKTVKLWHRQDG-KLLKTLN--GHQDWVNSLSFSPDGKTLASASADKTIKLWR 1267
Query: 679 ADRAASMVSIPGMNG---DVRSLADVKPRITEESNDKSKVWK------------------ 717
+ ++ G N DV +D K + ++ K+W
Sbjct: 1268 IADGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA 1327
Query: 718 LTELSEPNQCRSLRLPENLRATK---ISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 774
+ L + N S L +R + IS L + + A++ +H + +
Sbjct: 1328 VNFLPDSNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVS--FLH--------DGSI 1377
Query: 775 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK-ISLFNM 833
A A QLW G ++ + +A+ + + + SA+ K + ++ +
Sbjct: 1378 IATAGADGNIQLWHSQDGSLLKTLPGN----KAIYGISFTPQGDLIASANADKTVKIWRV 1433
Query: 834 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 893
K + T + + F P D +A D++++++NV + K LKGH+ +
Sbjct: 1434 RDGKALKTLIGHDNEVNKVNFSP-DGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVF 1492
Query: 894 GLAFSHALNVLVSSGADSQLCVWSS 918
++FS ++ S+ AD + +W S
Sbjct: 1493 WVSFSPDGKIIASASADKTIRLWDS 1517
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 114/543 (20%), Positives = 205/543 (37%), Gaps = 69/543 (12%)
Query: 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 475
SP+G L + V+++ G + L H V + FS P+ ++ + +CG D
Sbjct: 651 SPEGQLLATCDTDCHVRVWEVKSGKLL---LICRGHSNWVRFVVFS-PDGEI-LASCGAD 705
Query: 476 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 535
+ +K+W +G GHE V+SV H + + + S + D IK W +
Sbjct: 706 ENVKLWSVRDGVCIKTLTGHEHEVFSVAFH--PDGETLASASGDKTIKLWDIQDGTCLQT 763
Query: 536 YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 595
W +A+S DG N ++ D +IK WD+ +
Sbjct: 764 LTGHTDWVRCVAFSPDG---------------------NTLASSAADHTIKLWDVSQGKC 802
Query: 596 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 655
L ++ + G S + F+ DG LA + D IKI G L+T+ + + S S
Sbjct: 803 LRTLKSHTGWVRS--VAFSADGQTLASGSGDRTIKIWNYHTG-ECLKTY--IGHTNSVYS 857
Query: 656 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA---DVKPRITEESNDK 712
P + + + + ++ G +V S+A D + +
Sbjct: 858 IAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQS 917
Query: 713 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL-LWKWQRTE 771
++W QC L T + + + ILA SN + LW WQ +
Sbjct: 918 VRLWN----CRTGQC----LKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGK 969
Query: 772 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE----EAVPCFA-LSKNDSYVMS---- 822
SS + + P + + TDS+ CF L ++ +V +
Sbjct: 970 YISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFH 1029
Query: 823 ------ASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI 873
A+G + L+N+ T + + T +A+ P D ++A D S+++
Sbjct: 1030 PQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP-DGQLLASASADQSVRL 1088
Query: 874 YNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT 933
++ L+GHS R+ FS ++ + D + + W+ Q+ + L+ T
Sbjct: 1089 WDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKI-----WDWQQGKCLKTLT 1143
Query: 934 GRT 936
G T
Sbjct: 1144 GHT 1146
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1101 | ||||||
| 24461849 | 1127 | CTV.2 [Citrus trifoliata] | 0.988 | 0.965 | 0.952 | 0.0 | |
| 224134436 | 1172 | predicted protein [Populus trichocarpa] | 0.995 | 0.935 | 0.839 | 0.0 | |
| 356550630 | 1132 | PREDICTED: topless-related protein 1-lik | 0.991 | 0.964 | 0.844 | 0.0 | |
| 225463556 | 1138 | PREDICTED: protein TOPLESS [Vitis vinife | 0.993 | 0.961 | 0.847 | 0.0 | |
| 449517721 | 1139 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.995 | 0.962 | 0.838 | 0.0 | |
| 449468952 | 1139 | PREDICTED: protein TOPLESS-like [Cucumis | 0.995 | 0.962 | 0.838 | 0.0 | |
| 356526242 | 1133 | PREDICTED: protein TOPLESS-like [Glycine | 0.991 | 0.963 | 0.846 | 0.0 | |
| 255553317 | 1115 | WD-repeat protein, putative [Ricinus com | 0.975 | 0.963 | 0.841 | 0.0 | |
| 357458875 | 1138 | WD repeat-containing protein, putative [ | 0.993 | 0.961 | 0.831 | 0.0 | |
| 356554802 | 1136 | PREDICTED: topless-related protein 1-lik | 0.995 | 0.964 | 0.830 | 0.0 |
| >gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 2201 bits (5702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1086/1140 (95%), Positives = 1086/1140 (95%), Gaps = 52/1140 (4%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS SLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ
Sbjct: 173 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 287
PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD
Sbjct: 233 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 292
Query: 288 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 347
SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHS QAFS PEDLPKTVTRTLNQGSS
Sbjct: 293 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHS----QAFSAPEDLPKTVTRTLNQGSS 348
Query: 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 407
PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG
Sbjct: 349 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 408
Query: 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 467
VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL
Sbjct: 409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 468
Query: 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527
CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY
Sbjct: 469 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 528
Query: 528 DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 561
DNLGSRVDYEAPGRWCTTMAYSADGTR TYQGFRK
Sbjct: 529 DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFRK 588
Query: 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 621
RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA
Sbjct: 589 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 648
Query: 622 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 681
VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR
Sbjct: 649 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 708
Query: 682 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741
AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI
Sbjct: 709 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 768
Query: 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801
SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD
Sbjct: 769 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 828
Query: 802 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 861
SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI
Sbjct: 829 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 888
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921
IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW SDGW
Sbjct: 889 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWGSDGW 948
Query: 922 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 981
EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES
Sbjct: 949 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 1008
Query: 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1041
SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV SSNVHPLVIA
Sbjct: 1009 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV-SSNVHPLVIA 1067
Query: 1042 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1101
AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Sbjct: 1068 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1127
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134436|ref|XP_002327405.1| predicted protein [Populus trichocarpa] gi|222835959|gb|EEE74380.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2013 bits (5216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 988/1177 (83%), Positives = 1041/1177 (88%), Gaps = 81/1177 (6%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCK PR NPDIKTLF DH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKTPRSNPDIKTLFFDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPA-------------------- 266
PTPAPVP PLAGWMSNPPTVTHPAVSGG AIGLG+PSI
Sbjct: 241 PTPAPVPAPLAGWMSNPPTVTHPAVSGGGAIGLGAPSISGSSFLLFAIDASANHHTEYVS 300
Query: 267 ----------------AALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNV 310
AALKHPRTPP+NPSVDYPSGD DH++KRTRP+GISDE+NLPVNV
Sbjct: 301 IHVSLFNNICILLPCVAALKHPRTPPSNPSVDYPSGDPDHVAKRTRPMGISDEVNLPVNV 360
Query: 311 LPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDI 370
LP+SF GH H H Q F+ P+DLPK V RTLNQGSSPMSMDFHPVQQT+LLVGTNVG+I
Sbjct: 361 LPMSFPGHGHGHG--QTFNAPDDLPKAVVRTLNQGSSPMSMDFHPVQQTILLVGTNVGEI 418
Query: 371 GLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 430
GLWEVGSRERLVLRNFKVWDL ACSMPLQAALVKDPGVSVNRVIWSPDG+LFGVAYSRHI
Sbjct: 419 GLWEVGSRERLVLRNFKVWDLNACSMPLQAALVKDPGVSVNRVIWSPDGNLFGVAYSRHI 478
Query: 431 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 490
VQIYSYHG D+VRQHLEIDAHVGGVND+AFS PNKQLCVITCGDDK IKVWDA GAKQY
Sbjct: 479 VQIYSYHGNDDVRQHLEIDAHVGGVNDLAFSTPNKQLCVITCGDDKIIKVWDAATGAKQY 538
Query: 491 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 550
FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA
Sbjct: 539 TFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 598
Query: 551 DGTR--------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 584
DGTR TY GFRK SLGVVQFDTTKNRFLAAGDDFS
Sbjct: 599 DGTRLFSCGTSKDGESYIVEWNESEGAVKRTYVGFRKHSLGVVQFDTTKNRFLAAGDDFS 658
Query: 585 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
IKFWDMDSVQLLT+IDADGGLPASPRIRFNK+G LLAVS NDNGIKILA SDGIRLLRTF
Sbjct: 659 IKFWDMDSVQLLTTIDADGGLPASPRIRFNKEGTLLAVSANDNGIKILANSDGIRLLRTF 718
Query: 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 704
ENL+YDASR SE+ PT++PISAAAAAAATS+GLADR AS+V++ GMNGD R+L DVKPR
Sbjct: 719 ENLSYDASRASES--PTVNPISAAAAAAATSSGLADRGASVVAVAGMNGDARNLGDVKPR 776
Query: 705 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 764
I EE NDKSK+WKLTE++EP+QCRSLRLPENLR TKISRLI+TNSGNAILALASNAIHLL
Sbjct: 777 IAEELNDKSKIWKLTEINEPSQCRSLRLPENLRVTKISRLIYTNSGNAILALASNAIHLL 836
Query: 765 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 824
WKWQR++RN+SGKATA V PQLWQP SGI+MTND+TDSNPEEAV CFALSKNDSYVMSAS
Sbjct: 837 WKWQRSDRNASGKATAGVPPQLWQPSSGILMTNDITDSNPEEAVACFALSKNDSYVMSAS 896
Query: 825 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884
GGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSK
Sbjct: 897 GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSK 956
Query: 885 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 944
LKGHSKRITGLAFSH L+VLVSSGAD+QLCVW+SDGWEKQK RFLQ+PTGRT TAQSDTR
Sbjct: 957 LKGHSKRITGLAFSHVLSVLVSSGADAQLCVWNSDGWEKQKTRFLQVPTGRTTTAQSDTR 1016
Query: 945 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1004
VQFHQDQIHFLVVHETQLAIFETTKLECVKQW+PRESSAPI+HA FSCDSQLVYA FLDA
Sbjct: 1017 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWLPRESSAPISHAVFSCDSQLVYASFLDA 1076
Query: 1005 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064
TVCVFSAANL+LRCRINPS+Y P V SSNVHPLVIAAHPQEPN+FALGLSDGGVHVFEP
Sbjct: 1077 TVCVFSAANLRLRCRINPSSYPPPNV-SSNVHPLVIAAHPQEPNQFALGLSDGGVHVFEP 1135
Query: 1065 LESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1101
LESEGKWGVPPP +NGS SS+ A P VG SGSDQAQR
Sbjct: 1136 LESEGKWGVPPPAENGSASSVAAIPSVGPSGSDQAQR 1172
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1986 bits (5144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 964/1141 (84%), Positives = 1037/1141 (90%), Gaps = 49/1141 (4%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 287
PTPAPVPTPLAGWMSNP TV HPAVSGGAIGLG+PSIPAA LKHPRTPPTNPSVDYPSGD
Sbjct: 241 PTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGD 299
Query: 288 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 347
SDH+SKRTRPIG+SDE+NLPVNVL +F GH H QAF+ P+DLPKT R+LNQGSS
Sbjct: 300 SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHG----QAFNAPDDLPKTAMRSLNQGSS 355
Query: 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 407
PMSMDFHPVQQTLLLVGTNVGDI LWEVGSRERL++RNFKVWDL ACSMP QAALVKDPG
Sbjct: 356 PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPG 415
Query: 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 467
VSVNRVIWSPDG+LFGVAYSRHIVQIYSYHGGD+V QHLEIDAHVGGVND+AFSHPNKQL
Sbjct: 416 VSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEIDAHVGGVNDLAFSHPNKQL 475
Query: 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527
CVITCGDDKTIKVWDA GAKQY FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 476 CVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 535
Query: 528 DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 561
DNLGSRVDYEAPGRWCTTMAYSADGTR TYQGFRK
Sbjct: 536 DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRK 595
Query: 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 621
RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD++QLLT++DADGGLPASPRIRFNKDG LLA
Sbjct: 596 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGALLA 655
Query: 622 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLAD 680
VS N+NGIKILA +DGIRLLRT EN YD SRTSE +KPTI+PISAAAAAA ++A LA+
Sbjct: 656 VSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKPTINPISAAAAAATSAA-LAE 714
Query: 681 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 740
RA+S+V+I MNGD R+L DVKPRI+EESNDKSK+WKLTE++EP+QCRSL+LPEN+R K
Sbjct: 715 RASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNK 774
Query: 741 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800
ISRLI+TNSGNAILALASNAIHLLWKWQR +RNS+GKATASV PQLWQP SGI+MTND+T
Sbjct: 775 ISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATASVQPQLWQPSSGILMTNDIT 834
Query: 801 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 860
D+N E+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNN
Sbjct: 835 DNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 894
Query: 861 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920
IIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++DG
Sbjct: 895 IIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDG 954
Query: 921 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE 980
WEKQK+RFLQ+P GRTP AQ+DTRVQFHQDQI FLVVHETQLAI+E TKLEC+KQW PR+
Sbjct: 955 WEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRD 1014
Query: 981 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1040
SSAPI+HATFSCDSQL+YA FLDATVCV S +NL+LRCRINPSAYL A V SSNV PLVI
Sbjct: 1015 SSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRINPSAYLSASV-SSNVQPLVI 1073
Query: 1041 AAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQ 1100
AAHPQEPN+FA+GLSDGGVHVFEP ESEGKWGVPPP++NGSTS+M AT G+ SD+AQ
Sbjct: 1074 AAHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIENGSTSNMAATSV--GASSDEAQ 1131
Query: 1101 R 1101
R
Sbjct: 1132 R 1132
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463556|ref|XP_002268265.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297743564|emb|CBI36431.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1985 bits (5143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 970/1145 (84%), Positives = 1040/1145 (90%), Gaps = 51/1145 (4%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 287
PTPAPVPTPL WMSNP TVTHPAVSGG IGLG+PSIPAA LKHPRTPPTNPSVDYPSGD
Sbjct: 241 PTPAPVPTPL--WMSNPSTVTHPAVSGGPIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGD 297
Query: 288 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 347
S+H++KR RP+GISDE+NLPVNVLPV+F GH HS QAF+ P+DLPKT+ R L QGSS
Sbjct: 298 SEHVAKRGRPMGISDEVNLPVNVLPVTFPGHGHS----QAFNAPDDLPKTLVRNLTQGSS 353
Query: 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 407
PMSMDFHPVQQTLLLVGTNVGDIGLWEVGS+++LV RNFKVWD+GACS+PLQAAL KDPG
Sbjct: 354 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSKQKLVSRNFKVWDIGACSVPLQAALAKDPG 413
Query: 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 467
VSVNR+IWSPDGSLFGVAYSRHIVQIYSYHGGD+VRQHLEIDAH GGVND+AFSHPNKQL
Sbjct: 414 VSVNRIIWSPDGSLFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHAGGVNDLAFSHPNKQL 473
Query: 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527
CVITCGDDKTIKVWDATNG KQY FEGHE VYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 474 CVITCGDDKTIKVWDATNGTKQYTFEGHEDAVYSVCPHYKENIQFIFSTALDGKIKAWLY 533
Query: 528 DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 561
DNLGSRVDY+APGRWCTTMAYSADGTR TYQGFRK
Sbjct: 534 DNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFRK 593
Query: 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGC 618
RSLGVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLT +DA+GGLP ASPRIRFNKDG
Sbjct: 594 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTILDAEGGLPGLPASPRIRFNKDGT 653
Query: 619 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSA- 676
LLAVS N+N IKILA SDG+RLLRTF+NL+YDASR SE+ +KP I+ ISAAAAAAA ++
Sbjct: 654 LLAVSANENSIKILANSDGLRLLRTFDNLSYDASRASESVTKPAINSISAAAAAAAATSA 713
Query: 677 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 736
GLADR AS+V+I GMNGD R++ DVKPR+ EE+NDKSK+WKLTE++E +QCRSLRL ENL
Sbjct: 714 GLADRGASVVAIAGMNGDARNMGDVKPRLAEETNDKSKIWKLTEINETSQCRSLRLQENL 773
Query: 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796
R TKISRLI+TNSGNAILALASNAIH LWKWQR +RNSSGKATA+V+PQLWQP SGI+MT
Sbjct: 774 RITKISRLIYTNSGNAILALASNAIHFLWKWQRNDRNSSGKATATVSPQLWQPTSGILMT 833
Query: 797 NDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 856
NDV D+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHP
Sbjct: 834 NDVADTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHP 893
Query: 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
QDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVW
Sbjct: 894 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVW 953
Query: 917 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW 976
SSDGWEKQK+RFLQ+P GRT T QSDTRVQFHQDQ HFLVVHETQLAI+E TKL+CVKQW
Sbjct: 954 SSDGWEKQKSRFLQVPAGRTSTGQSDTRVQFHQDQTHFLVVHETQLAIYEATKLDCVKQW 1013
Query: 977 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1036
V RE++API+HATFSCDS LVYA FLDATVCVFSAANL+LRCRINP+AYLPA VS+SNVH
Sbjct: 1014 VQREAAAPISHATFSCDSLLVYASFLDATVCVFSAANLRLRCRINPTAYLPASVSNSNVH 1073
Query: 1037 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGS 1096
PLVIAAHPQEPN+FALGLSDGGV VFEPLESEGKWGVPPPV+NGS SS+PATP VG SGS
Sbjct: 1074 PLVIAAHPQEPNQFALGLSDGGVCVFEPLESEGKWGVPPPVENGSASSVPATPSVGPSGS 1133
Query: 1097 DQAQR 1101
DQ QR
Sbjct: 1134 DQPQR 1138
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517721|ref|XP_004165893.1| PREDICTED: LOW QUALITY PROTEIN: protein TOPLESS-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1979 bits (5128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 959/1144 (83%), Positives = 1040/1144 (90%), Gaps = 48/1144 (4%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVF TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFXTFNEELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPK G FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 286
PT APVP PLAGWMSNP VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSV+YPS
Sbjct: 241 PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVEYPSA 299
Query: 287 DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 346
DSDH+SKR +P+G+SDE+NLPVNVLPVSFTGH H+ Q F+ P+DLPKTV RTLNQGS
Sbjct: 300 DSDHVSKRPKPMGMSDEVNLPVNVLPVSFTGHGHA----QTFNAPDDLPKTVMRTLNQGS 355
Query: 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 406
+PMSMDFHP+QQTLLLVGTNVG+IGLWEVGSRERLV +NFKVWDL ACSMPLQAALVK+P
Sbjct: 356 NPMSMDFHPIQQTLLLVGTNVGEIGLWEVGSRERLVSKNFKVWDLNACSMPLQAALVKEP 415
Query: 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 466
VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD++RQHLEIDAHVGGVND+AFS+PNKQ
Sbjct: 416 DVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQ 475
Query: 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 526
LCVITCGDDKTIKVWDA NGA+QYIFEGHEAPV+SVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 476 LCVITCGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWL 535
Query: 527 YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 560
YDN+GSRVDY+APGRWCTTMAYSADGTR TYQGFR
Sbjct: 536 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFR 595
Query: 561 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 620
KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 596 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 655
Query: 621 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAATSAGLA 679
AVS N+NGIKILA DGIRLLRTFENL+YDA+RTSE +KPTI+PISAAAA AA +A +
Sbjct: 656 AVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAAAAAAGS 715
Query: 680 --DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 737
DR AS+V++ G+ GD RSL DVKPRI E+SNDKSK+WKLTE++EP+QCRSLRLPEN+R
Sbjct: 716 AADRGASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLRLPENVR 775
Query: 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 797
KISRLI+TNSG+AILALASNAIHLLWKW R+ERNS+GKATA+V PQLWQP SGI+MTN
Sbjct: 776 VNKISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGKATANVLPQLWQPSSGILMTN 835
Query: 798 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 857
DV D++ EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 836 DVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
DNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVWS
Sbjct: 896 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWS 955
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 977
SD WEKQK RFLQ+P+GR P++QSDTRVQFHQDQ+HFLVVHETQ+AI+ETTKLECVKQW
Sbjct: 956 SDVWEKQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLECVKQWT 1015
Query: 978 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1037
PRES API+HATFSCDSQ++YA FLDATVCVF+ A+L+LRCRI+PSAYLPA VS+++V P
Sbjct: 1016 PRESGAPISHATFSCDSQMIYASFLDATVCVFTVASLRLRCRISPSAYLPASVSNASVQP 1075
Query: 1038 LVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSD 1097
LVIAAHPQE N+FALGLSDGGVHVFEPLESEGKWGVPPPV+NGS SS+P TP VG SGS+
Sbjct: 1076 LVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSASSVPTTPSVGASGSE 1135
Query: 1098 QAQR 1101
QA R
Sbjct: 1136 QAPR 1139
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468952|ref|XP_004152185.1| PREDICTED: protein TOPLESS-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1979 bits (5126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 959/1144 (83%), Positives = 1041/1144 (90%), Gaps = 48/1144 (4%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPK G FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 286
PT APVP PLAGWMSNP VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSV+YPS
Sbjct: 241 PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVEYPSA 299
Query: 287 DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 346
DSDH+SKR +P+G+SDE+NLPVNVLPVSFTGH H+ Q F+ P+DLPKTV RTLNQGS
Sbjct: 300 DSDHVSKRPKPMGMSDEVNLPVNVLPVSFTGHGHA----QNFNAPDDLPKTVMRTLNQGS 355
Query: 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 406
+PMSMDFHP+QQTLLLVGT+VG+IGLWEVGSRERLV +NFKVWDL ACSMPLQAALVK+P
Sbjct: 356 NPMSMDFHPIQQTLLLVGTDVGEIGLWEVGSRERLVSKNFKVWDLNACSMPLQAALVKEP 415
Query: 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 466
VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD++RQHLEIDAHVGGVND+AFS+PNKQ
Sbjct: 416 DVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQ 475
Query: 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 526
LCVITCGDDKTIKVWDA NGA+QYIFEGHEAPV+SVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 476 LCVITCGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWL 535
Query: 527 YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 560
YDN+GSRVDY+APGRWCTTMAYSADGTR TYQGFR
Sbjct: 536 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFR 595
Query: 561 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 620
KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 596 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 655
Query: 621 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAATSAGLA 679
AVS N+NGIKILA DGIRLLRTFENL+YDA+RTSE +KPTI+PISAAAA AA +A +
Sbjct: 656 AVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAAAAAAGS 715
Query: 680 --DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 737
DR AS+V++ G+ GD RSL DVKPRI E+SNDKSK+WKLTE++EP+QCRSLRLPEN+R
Sbjct: 716 AADRGASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLRLPENVR 775
Query: 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 797
KISRLI+TNSG+AILALASNAIHLLWKW R+ERNS+GKATA+V PQLWQP SGI+MTN
Sbjct: 776 VNKISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGKATANVLPQLWQPSSGILMTN 835
Query: 798 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 857
DV D++ EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 836 DVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
DNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVWS
Sbjct: 896 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWS 955
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 977
SD WEKQK RFLQ+P+GR P++QSDTRVQFHQDQ+HFLVVHETQ+AI+ETTKLECVKQW
Sbjct: 956 SDVWEKQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLECVKQWT 1015
Query: 978 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1037
PRES API+HATFSCDSQ++YA FLDATVCVF+ A+L+LRCRI+PSAYLPA VS+++V P
Sbjct: 1016 PRESGAPISHATFSCDSQMIYASFLDATVCVFTVASLRLRCRISPSAYLPASVSNASVQP 1075
Query: 1038 LVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSD 1097
LVIAAHPQE N+FALGLSDGGVHVFEPLESEGKWGVPPPV+NGS SS+P TP VG SGS+
Sbjct: 1076 LVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSASSVPTTPSVGASGSE 1135
Query: 1098 QAQR 1101
QA R
Sbjct: 1136 QAPR 1139
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1977 bits (5123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 967/1142 (84%), Positives = 1041/1142 (91%), Gaps = 50/1142 (4%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLG+LPKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPFQ 240
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 286
PTPAPVPTPLAGWMSNP TV H AVSGG AIGLG+PS+PAA LKHPRTPPTNPSVDYPSG
Sbjct: 241 PTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAA-LKHPRTPPTNPSVDYPSG 299
Query: 287 DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 346
DSDH++KRTRP+GISDE+NLPVNVL +F GH HSQAF+ P+D+PKTV RTLNQGS
Sbjct: 300 DSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQ---HSQAFNAPDDIPKTVVRTLNQGS 356
Query: 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 406
SPMSMDFHP+QQ+LLLVGT+VGDI LWEVGSRERLV RNFKVWDL ACSMP QAALVKDP
Sbjct: 357 SPMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDP 416
Query: 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 466
GVSVNRVIWSPDG+LFGVAYSRHIVQIYSYHGGDE+RQHLEIDAHVGGVND+AFSHPNKQ
Sbjct: 417 GVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAHVGGVNDLAFSHPNKQ 476
Query: 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 526
LCVITCGDDKTIKVWDA +GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 477 LCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536
Query: 527 YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 560
YDNLGSRVDYEAPGRWCTTMAYSADGTR TYQGFR
Sbjct: 537 YDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFR 596
Query: 561 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 620
KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 597 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 656
Query: 621 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLA 679
AVS N+NGIKILA DGIRLLRT EN Y+ASR SE +KPTI+PISAAAAAA ++A LA
Sbjct: 657 AVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTINPISAAAAAATSAA-LA 715
Query: 680 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739
+RA+S+V+I GMNGD R+L DVKPRI+EESNDKSK+WKLTE++E +QCRSL+LPEN+R T
Sbjct: 716 ERASSVVAIAGMNGDTRNLGDVKPRISEESNDKSKIWKLTEINEQSQCRSLKLPENVRVT 775
Query: 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799
KISRLI+TNSGNAILALASNAIHLLWKWQR ERNSSGKATA++ PQLWQP SGI+MTND+
Sbjct: 776 KISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGILMTNDI 835
Query: 800 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 859
DSNPE+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDN
Sbjct: 836 ADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 895
Query: 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919
NIIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++D
Sbjct: 896 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTD 955
Query: 920 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR 979
GWEKQK+RFLQ+P GRTP AQSDTRVQFHQDQI FLVVHETQLAI+E TKLE +KQW PR
Sbjct: 956 GWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPR 1015
Query: 980 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1039
+SSAPI++ATFSCDSQLV+A FLDAT+CVFSA+NL+LRCRINPS+YLPA V SSN+ PLV
Sbjct: 1016 DSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLRCRINPSSYLPASV-SSNIQPLV 1074
Query: 1040 IAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQA 1099
IAAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP++NGS S++ AT VG SDQA
Sbjct: 1075 IAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAAT-SVG--PSDQA 1131
Query: 1100 QR 1101
QR
Sbjct: 1132 QR 1133
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553317|ref|XP_002517701.1| WD-repeat protein, putative [Ricinus communis] gi|223543333|gb|EEF44865.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1965 bits (5091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 961/1142 (84%), Positives = 1021/1142 (89%), Gaps = 68/1142 (5%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFATFNEELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSAR+IML FPNLKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIML------------------FPNLKNSRLRTLINQSLN 162
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 163 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 222
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 286
PTPAPVP PLAGWMSNP VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSVDYPSG
Sbjct: 223 PTPAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVDYPSG 281
Query: 287 DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 346
DSDH++KRTRP+GISDE+NLPVNVLPVSF GH H Q F+ P+DLPKTV+RTLNQGS
Sbjct: 282 DSDHVAKRTRPMGISDEVNLPVNVLPVSFPGHGHG----QNFNAPDDLPKTVSRTLNQGS 337
Query: 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 406
SPMSMDFHP++QTLLLVGTNVGD+ LWEVGSRERL+LRNFKVWD+ CSMPLQAALVKDP
Sbjct: 338 SPMSMDFHPLEQTLLLVGTNVGDVALWEVGSRERLMLRNFKVWDISTCSMPLQAALVKDP 397
Query: 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 466
GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH GD+VRQHLEIDAHVGGVND+AFS PNKQ
Sbjct: 398 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHRGDDVRQHLEIDAHVGGVNDLAFSTPNKQ 457
Query: 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 526
LCVITCGDDKTIKVWDA G +QY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 458 LCVITCGDDKTIKVWDAATGTRQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 517
Query: 527 YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 560
YDNLGSRVDYEAPGRWCTTMAYSADGTR +YQGFR
Sbjct: 518 YDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESHIVEWNESEGNVKRSYQGFR 577
Query: 561 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 620
KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLTSIDADGGLPASPRIRFNKDG LL
Sbjct: 578 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNLQLLTSIDADGGLPASPRIRFNKDGSLL 637
Query: 621 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLA 679
AVS N+NGIKILA SDG RLLRTFENL+YDASR SE +KP I+PISAAAA +A A
Sbjct: 638 AVSANENGIKILANSDGHRLLRTFENLSYDASRASEAVTKPIINPISAAAATSAGLA--- 694
Query: 680 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739
DR AS+V+IPGMNGD R++ DVKPRITEESNDKSK+WKLTE++EP QCRSLRLP+NLR
Sbjct: 695 DRTASVVTIPGMNGDARNMGDVKPRITEESNDKSKIWKLTEINEPTQCRSLRLPDNLRVN 754
Query: 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799
KISRLI+TNSGNAILALASNAIHLLWKWQR+ERNS+GKATA+V+PQLWQP SGI+MTND+
Sbjct: 755 KISRLIYTNSGNAILALASNAIHLLWKWQRSERNSTGKATANVSPQLWQPSSGILMTNDI 814
Query: 800 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 859
TD+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDN
Sbjct: 815 TDTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 874
Query: 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919
NIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVW+SD
Sbjct: 875 NIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVWNSD 934
Query: 920 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR 979
GWEKQK RFLQ+P GRT T QSDTRVQFHQDQI FLVVHETQLAI+E TKLEC KQWV R
Sbjct: 935 GWEKQKTRFLQVPPGRTTTGQSDTRVQFHQDQIQFLVVHETQLAIYEATKLECTKQWVTR 994
Query: 980 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1039
ESSAPI+HATFSCDSQLVYA FLDATVCVFSA NL+LRCRINPS+YL A VSSS +HPLV
Sbjct: 995 ESSAPISHATFSCDSQLVYASFLDATVCVFSAQNLRLRCRINPSSYLSANVSSS-LHPLV 1053
Query: 1040 IAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQA 1099
IAAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP +NGS SS+PATP VG SGSDQA
Sbjct: 1054 IAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPAENGSASSVPATPSVGPSGSDQA 1113
Query: 1100 QR 1101
QR
Sbjct: 1114 QR 1115
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1943 bits (5034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 952/1145 (83%), Positives = 1025/1145 (89%), Gaps = 51/1145 (4%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPAN+PLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQ 240
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSG-GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 286
P PA VPT LAGWMSNP TV H AVSG GAIGLG+PS+P A LKHPRTPP NPSVDYPSG
Sbjct: 241 PNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGA-LKHPRTPPINPSVDYPSG 299
Query: 287 DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLP--KTVTRTLNQ 344
DSDH++KRTRP+GI+DE+NLPVNVL +F GH HS QAF+ P+DLP KTVTRTLNQ
Sbjct: 300 DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHS----QAFNAPDDLPLPKTVTRTLNQ 355
Query: 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK 404
GSSPMSMDFHPVQQ+LLLVGTNVG I LWEVGSRE+LV RNFKVWDL ACSMP QAALVK
Sbjct: 356 GSSPMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKVWDLSACSMPFQAALVK 415
Query: 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPN 464
DP VSVNRVIWSPDG+LFGVAYSRHIVQIYSYH GD+VRQHLEIDAHVGGVND+AFSHPN
Sbjct: 416 DPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEIDAHVGGVNDLAFSHPN 475
Query: 465 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 524
KQLCVITCGDDKTIKVWDA +GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKA
Sbjct: 476 KQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKA 535
Query: 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQG 558
WLYDNLGSRVDY+APGRWCTTMAYSADGTR TYQG
Sbjct: 536 WLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQG 595
Query: 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 618
FRKRS+GVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLT++DADGGLPASPRIRFNKDG
Sbjct: 596 FRKRSMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGT 655
Query: 619 LLAVSTNDNGIKILATSDGIRLLRTFENLA-YDASRTSENSKPTISPISAAAAAAATSAG 677
LLAVS NDNGIKI+A +DGIRLLRT EN + YDASR SE +KPTI+ S ++AAAATSA
Sbjct: 656 LLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASEMAKPTIN--SMSSAAAATSAA 713
Query: 678 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 737
LA+RA+S+ +I GMNGD RS+ DVKPRI+EE+NDKSK+WKLTE++EP+ CRSL+LPEN+R
Sbjct: 714 LAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTEINEPSHCRSLKLPENVR 773
Query: 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 797
KISRLI+TNSGNAILALASNAIHLLWKW R ERNSSGKA ASV QLWQP SGI+MTN
Sbjct: 774 VNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANASVPAQLWQPSSGILMTN 833
Query: 798 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 857
D+ DSNPE++VPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 834 DIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 893
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW+
Sbjct: 894 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWN 953
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 977
+DGWEKQK RFLQ+P GRTP+AQSDTRVQFHQDQI FLVVHETQLAIFE TKLEC+KQW
Sbjct: 954 TDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWA 1013
Query: 978 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS-SNVH 1036
PR+SSAPI+HATFSCDSQL+YA FLDATVCVF+A+NL+LRCRINP AYLPA VSS SNV
Sbjct: 1014 PRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPPAYLPASVSSNSNVQ 1073
Query: 1037 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGS 1096
PLVIAAHP E N+FA+GLSDGGVHVFEPLESEGKWGVPPP +NGS+S+ A G S
Sbjct: 1074 PLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNENGSSSNNVAVATSVGLSS 1133
Query: 1097 DQAQR 1101
DQAQR
Sbjct: 1134 DQAQR 1138
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1941 bits (5028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 948/1141 (83%), Positives = 1023/1141 (89%), Gaps = 45/1141 (3%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFE+ KQKYLEALDKHDR+KAVEILVKDLKVF+TFN+ELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKY DTKSAR+IMLVELKKLIEANPLF DKLQFPNLK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYCDTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 227
WQHQLCKNPRPNPDIKTLFVDH+CGQ NGA APSPANN LLGSLPKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPFQ 240
Query: 228 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 287
P+PAPVPTPLAGWMSNP TV HP VSGGAIGLG PSIPAA LKHPRTPPT PSVDYPSGD
Sbjct: 241 PSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAA-LKHPRTPPTYPSVDYPSGD 299
Query: 288 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 347
SDH+SKRTRP+G+SDE+NLPVNVL +F GH H H H QAF+ P+DLPKT RTLNQGSS
Sbjct: 300 SDHVSKRTRPMGMSDEVNLPVNVLSATFPGHGHGHGHGQAFNAPDDLPKTAMRTLNQGSS 359
Query: 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 407
PMSMDFHPVQQTLLLVGTNVGDI LWEVGSRERL++RNFKVWDL ACSMP QAALVKDPG
Sbjct: 360 PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPG 419
Query: 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 467
VSV RVIWSPDG+LFGVAYSRHIVQIYSYH GD+V+QHLEIDAHVGGVND+AFSHPNKQL
Sbjct: 420 VSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVNDLAFSHPNKQL 479
Query: 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527
CVITCGDDKTIKVWDA GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 480 CVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 539
Query: 528 DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 561
DNLGSRVDYEAPGRWCTTMAYSADGTR TYQGFRK
Sbjct: 540 DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGAVKRTYQGFRK 599
Query: 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 621
RSLG VQFDTTKNR+LAAGDDFSIKFWDMD++QLLT++DADGGLP SPRIRFNKDG LLA
Sbjct: 600 RSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSPRIRFNKDGALLA 659
Query: 622 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAATSAGLAD 680
VS +NGIKILA +DGIRLLRT EN YD SRTSE +KPTI+PISAAAAAA ++A L +
Sbjct: 660 VSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAAAAAATSAA-LGE 718
Query: 681 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 740
RA S+V I MNGD R+L DVKPRI+EESNDKSK+WKLTE++EP+QCRSL+LPEN+R K
Sbjct: 719 RALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNK 778
Query: 741 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800
ISRLI+TNSGNAILALASNAIHLLWKWQR +RNS+ KA+ASV PQLWQP SGI+MTND+T
Sbjct: 779 ISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQPSSGILMTNDIT 838
Query: 801 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 860
DSN E+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAA FLAFHPQDNN
Sbjct: 839 DSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAANFLAFHPQDNN 898
Query: 861 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920
IIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++DG
Sbjct: 899 IIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDG 958
Query: 921 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE 980
WEKQK+RFLQ+P GRTP AQ+DTRVQFHQDQI FLVVHETQLAI+E TKLEC+KQW PR+
Sbjct: 959 WEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRD 1018
Query: 981 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1040
SSAPI+HATFSCDSQL+YA FLDATVCVFS +NL+L+CRINPSAYL A V SSNV PLVI
Sbjct: 1019 SSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSASV-SSNVQPLVI 1077
Query: 1041 AAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQ 1100
AAHPQEPN+FA+GLSDGGVHVFEPLESEGKWGVPPP++NGSTS+M AT G+ SD+AQ
Sbjct: 1078 AAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSTSNMAATSV--GASSDEAQ 1135
Query: 1101 R 1101
R
Sbjct: 1136 R 1136
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1101 | ||||||
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.974 | 0.958 | 0.727 | 0.0 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.952 | 0.927 | 0.581 | 0.0 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.502 | 0.488 | 0.831 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.327 | 0.487 | 0.371 | 4e-84 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.144 | 0.474 | 0.282 | 2.6e-12 | |
| FB|FBgn0036354 | 391 | Poc1 "Proteome of centrioles 1 | 0.068 | 0.191 | 0.307 | 3.3e-10 | |
| ASPGD|ASPL0000006405 | 1878 | AN6960 [Emericella nidulans (t | 0.140 | 0.082 | 0.281 | 3.1e-05 | |
| ASPGD|ASPL0000006214 | 434 | AN6385 [Emericella nidulans (t | 0.195 | 0.495 | 0.273 | 5.9e-10 | |
| TAIR|locus:2159562 | 589 | AT5G08560 "AT5G08560" [Arabido | 0.153 | 0.286 | 0.247 | 8.1e-10 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.099 | 0.357 | 0.256 | 8.3e-10 |
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4127 (1457.8 bits), Expect = 0., P = 0.
Identities = 807/1109 (72%), Positives = 901/1109 (81%)
Query: 14 QLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALD 73
+LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALD
Sbjct: 27 KLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALD 86
Query: 74 KHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVE 133
+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IMLVE
Sbjct: 87 RHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVE 146
Query: 134 LKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQ 193
LKKLIEANPLFRDKLQFP L+ SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDH+C
Sbjct: 147 LKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCRL 206
Query: 194 PNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXXXXXXXXXXXLAGWMSNPPTVTHPAVS 253
PN ARAPSP NNPLLGSLPKA FPPLGAHG LAGWMS+P +V HPAVS
Sbjct: 207 PNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQPTPSPVPTPLAGWMSSPSSVPHPAVS 266
Query: 254 GGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPV 313
GG I LG+PSI AA LKHPRTPP+N +VDYPSGDSDH+SKRTRP+GISDE++L VN+LP+
Sbjct: 267 GGPIALGAPSIQAA-LKHPRTPPSNSAVDYPSGDSDHVSKRTRPMGISDEVSLGVNMLPM 325
Query: 314 SFTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 373
+F G Q F P+DLPKTV RTL+QGSSPMSMDFHP++QTLLLVGTNVGDIGLW
Sbjct: 326 TFPGQAHGHN--QTFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLW 383
Query: 374 EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 433
EVGSRERLV + FKVWDL CSMPLQAALVK+P VSVNRVIWSPDGSLFGVAYSRHIVQ+
Sbjct: 384 EVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQL 443
Query: 434 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 493
YSYHGG+++RQHLEIDAHVGGVNDIAFS PNKQLCV TCGDDKTIKVWDA G K+Y FE
Sbjct: 444 YSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFE 503
Query: 494 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 553
GHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLYDN+GSRVDYEAPGRWCTTMAYSADGT
Sbjct: 504 GHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGT 563
Query: 554 RTYQ-GFRKRSLG-VVQFDTTKNRFLAAGDDF---SIKFWDMDSVQ---LLTSIDADGGL 605
R + G K +V+++ ++ F S+ D+ + L D
Sbjct: 564 RLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKF 623
Query: 606 PASPRIRF----NKDGCLLA---VSTNDNGIKILATSDGIRLLRTFEN-----LAYDASR 653
I+ + DG L A + N G +LA S +++ N L +
Sbjct: 624 WDMDTIQLLTAIDADGGLQASPRIRFNKEG-SLLAVSANDNMIKVMANSDGLRLLHTVEN 682
Query: 654 -TSENSKPTISPIXXXXXXXXXXXXXXXXXXXMVSIPGMNGDVRSLADVKPRITEESNDK 712
+SE+SKP I+ I +VSIPGMNGD R++ DVKP ITEESNDK
Sbjct: 683 LSSESSKPAINSIPMVERPAS-----------VVSIPGMNGDSRNMVDVKPVITEESNDK 731
Query: 713 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER 772
SKVWKLTE+ EP+QCRSLRLPEN+R TKISRLIFTNSGNAILALASNAIHLLWKWQR +R
Sbjct: 732 SKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDR 791
Query: 773 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 832
N++GKATAS+ PQ WQP SGI+MTNDV ++NPEEAVPCFALSKNDSYVMSASGGKISLFN
Sbjct: 792 NATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFN 851
Query: 833 XXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 892
HPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRI
Sbjct: 852 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRI 911
Query: 893 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 952
TGLAFS+ LNVLVSSGAD+QLCVW++DGWEKQK++ LQIP GR+ ++ SDTRVQFHQDQ+
Sbjct: 912 TGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQV 971
Query: 953 HFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012
HFLVVHETQLAI+ETTKLEC+KQW RES+APITHATFSCDSQL+Y F+DAT+CVFS+A
Sbjct: 972 HFLVVHETQLAIYETTKLECMKQWPVRESAAPITHATFSCDSQLIYTSFMDATICVFSSA 1031
Query: 1013 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1072
NL+LRCR+NPSAYLPA +S+SNVHPLVIAAHPQE N FA+GLSDGGVH+FEPLESEGKWG
Sbjct: 1032 NLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWG 1091
Query: 1073 VPPPVDNGSTSSMPATPPVGGSGSDQAQR 1101
V PP +NGS S++ ATP VG S SDQ QR
Sbjct: 1092 VAPPPENGSASAVTATPSVGASASDQPQR 1120
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3233 (1143.1 bits), Expect = 0., P = 0.
Identities = 653/1123 (58%), Positives = 796/1123 (70%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFN+KYFE++ G WD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALD++DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSARSIM ELKKLIEANPLFR+KL FP+ K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 227
WQHQLCKNPRPNPDIKTLF+DH+C NGARA +P N P+ ++ + F PLG HG
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPV-AAVARPSNFVPLGVHGGPF 239
Query: 228 XXXXX---XXXXLAGWMSNP-PTVTHPAVSGGAIGLGSPSIPAAA--LKHPRTPPTNPSV 281
LAGWM+NP P+ + P SG P P+ LKHPR P + +
Sbjct: 240 QSNPAPAPNANALAGWMANPNPSSSVP--SGVVAASPFPMQPSQVNELKHPRAPSNSLGL 297
Query: 282 -DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTR 340
DY S D + L KR R S+E+ P + P + + +DLP+ V
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPA---------------SLDDLPRNVVS 342
Query: 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 400
T+ QGS +SMDFHP TLL VG + G++ LWEVGSRE++V FK+W++ ACS+ Q
Sbjct: 343 TIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQG 402
Query: 401 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 460
++VK+P +SV RV WSPDG+L GV++++H++ +Y+Y G D +RQHLEIDAHVG VND+AF
Sbjct: 403 SIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAF 461
Query: 461 SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 520
+HPNKQ+CV+TCGDDK IKVWD + G K + FEGHEAPVYS+CPH KENIQFIFSTALDG
Sbjct: 462 AHPNKQMCVVTCGDDKLIKVWDLS-GKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDG 520
Query: 521 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-------------------------- 554
KIKAWLYDN+GSRVDY+APG+WCTTM YSADG+R
Sbjct: 521 KIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKR 580
Query: 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 614
TY GFRK+S GVVQFDTT+NRFLA G+D IKFW+MD+ LLT ++A+GGLP PR+RFN
Sbjct: 581 TYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFN 640
Query: 615 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIXXXXXXXXX 674
KDG LLAV+T DNG KILA +DG+R LR FE +++AS+ S + K + S +
Sbjct: 641 KDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIG 700
Query: 675 XXXXXXXXXXMVSIPGMNG-DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 733
P NG + S KPR +S DKSK +LTE+ +P QCR + +P
Sbjct: 701 KIEHMDAGSPARPTPIPNGIEAMSRTMEKPR-NLDSVDKSKPLELTEIVDPTQCRQVTMP 759
Query: 734 ENLRA-TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 792
++ + +K++RL++TNSG +LAL SN + LWKW R E+N +GKATASV PQ WQP SG
Sbjct: 760 DSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG 819
Query: 793 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXX 852
++M NDV + NPE +VPC ALSKNDSYVMSA GGK+SLFN
Sbjct: 820 LLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFL 878
Query: 853 XXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 912
HPQDNNIIAIGM+DSSI IYNVRVDEVK+KLKGH K ITGLAFS ALN+LVSSGAD+Q
Sbjct: 879 AFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQ 938
Query: 913 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 972
L W++D WEK+K+ +Q+P G+ P DTRVQFH DQI LV HETQLAI++ +K+EC
Sbjct: 939 LFFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMEC 996
Query: 973 VKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV- 1030
+ +WVP+E+ S+PIT A++SC+SQLVYA F D + VF A +L+LRCRI PSAY+P
Sbjct: 997 IHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTP 1056
Query: 1031 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1073
+S+ + P VI AHPQEPN+ A+GLSDG V V EP E +WGV
Sbjct: 1057 NSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2495 (883.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 473/569 (83%), Positives = 506/569 (88%)
Query: 1 MSSLSRELVFLILQ-------------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47
MSSLSRELVFLILQ LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 48 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 107
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 108 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 167
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+NSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 168 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 227
WQHQLCKNPRPNPDIKTLFVDH+CG PNGARAPSP NNPLLG +PKAG FPPLGAHG
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 228 XXXXXXXXXLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 287
LAGWMS+P +V HPAVS GAI LG PSIPAA LKHPRTPPTN S+DYPS D
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPSAD 299
Query: 288 SDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSS 347
S+H+SKRTRP+GISDE+NL VN+LP+SF+G AF P+DLPKTV RTL+QGSS
Sbjct: 300 SEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHS--PAFKAPDDLPKTVARTLSQGSS 357
Query: 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 407
PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL CSMPLQAALVK+P
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 467
VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDI+FS PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527
CVITCGDDKTIKVWDA G K++ FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 528 DNLGSRVDYEAPGRWCTTMAYSADGTRTY 556
DN+GSRVDY+APGRWCTTMAYSADGTR +
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLF 566
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 4.0e-84, Sum P(2) = 4.0e-84
Identities = 139/374 (37%), Positives = 205/374 (54%)
Query: 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 776
K E+ +P+QC +L LP+ KI+RL ++ SG+ ILALA +A H LW W ++ N
Sbjct: 368 KPNEIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFC 426
Query: 777 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXX 836
K P+L QP SG M N++ S +++ CFA+ SY+ S SGGKI++F+
Sbjct: 427 KENVYPKPRLHQPQSGKTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNF 483
Query: 837 XXXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 896
P D ++A+G+DD SI I+ + +VK KL+GH ++IT LA
Sbjct: 484 EKVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLA 541
Query: 897 FSHALNVLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQS-DTRVQFHQDQIH 953
FS NVLVSS +D +LC+WS+ W K KN + + S T +QF QI
Sbjct: 542 FSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIE 601
Query: 954 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013
LVVH+ + ++E L+C QW+P S IT AT+S D +++Y F ++ + +
Sbjct: 602 LLVVHDGWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKT 661
Query: 1014 LKLRCRINPSAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1071
C+IN +++ S S V+P V+AAHP PN+ + GLS+G V V +PL S G W
Sbjct: 662 FMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-W 720
Query: 1072 GVPPPV-DNGSTSS 1084
G P+ DNG S+
Sbjct: 721 GEAAPLEDNGDYSN 734
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 48/170 (28%), Positives = 83/170 (48%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
S++ V +SPDG A + ++I+ + G R ++ H G++DIA+S +K +C
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
+ DDKTIK+WD +G +GH+ V+ V + + N+ I S + D ++ W
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159
Query: 529 NLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577
N G A T + ++ DGT G ++ + +DTT + L
Sbjct: 160 NTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRI--WDTTTGQLL 207
|
|
| FB|FBgn0036354 Poc1 "Proteome of centrioles 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 92 (37.4 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626
V FD+T + L A DD S K W + Q ++S S + F+ +G L+A +++D
Sbjct: 108 VDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAK--FSPNGKLVATASDD 165
Query: 627 NGIKILATSDGIRLLRTF 644
++I G +RTF
Sbjct: 166 KSVRIYDVDSG-ECVRTF 182
|
|
| ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 146 (56.5 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 47/167 (28%), Positives = 79/167 (47%)
Query: 384 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 443
R K+W A + LQ L + V V++S D L A V+I+ ++
Sbjct: 453 RTVKIWH--AATGSLQRTL-EGHNDWVRSVVFSHDSRLIASASDDMTVKIWDT-ATVPLQ 508
Query: 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503
+LE +H V + FSH ++ L + DD T+K+WD G+ + EGH+ V SV
Sbjct: 509 NNLE--SHDNWVRSVVFSHDSRLLA--SASDDMTVKIWDTATGSLENTLEGHDDRVNSVS 564
Query: 504 PHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYS 549
+ + + S + DG +K W Y G+ + ++ GR ++A+S
Sbjct: 565 --FSPDSRLLASASDDGTVKIW-YAATGTVQHTFDGSGRVAISLAFS 608
|
|
| ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 66/241 (27%), Positives = 116/241 (48%)
Query: 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 469
+ V +SPDG L + ++++ G ++Q LE H V +AFS PN QL +
Sbjct: 44 IETVTFSPDGRLLASGSNDTTIKLWDPASGG-LKQTLE--GHSSSVQSVAFS-PNGQL-L 98
Query: 470 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL--Y 527
+ D TIK+W++ + + ++ EGH V SV N Q +++ A+ G +K + +
Sbjct: 99 ASGSSDTTIKLWNSASDSLKHTMEGHSDRVESVA--FSPNGQ-LWNPAI-GSLKHTIEGH 154
Query: 528 DNLGSRVDYEAPGRWCTTMAYSADGT-RTYQGFR---KRSLG-----VVQFDTTKN-RFL 577
+ V + G+ + SA+ T + + K +LG V+ + + R L
Sbjct: 155 SDWVLSVAFSPDGQLLASG--SAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLL 212
Query: 578 AAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636
A+G +D +IK WD S L +++ S + F+ +G LLA ++D IK+ T+
Sbjct: 213 ASGSNDATIKLWDPPSGSLKHTLEGHSNKIES--LAFSPNGQLLASGSSDATIKLWDTAT 270
Query: 637 G 637
G
Sbjct: 271 G 271
|
|
| TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 8.1e-10, Sum P(4) = 8.1e-10
Identities = 45/182 (24%), Positives = 81/182 (44%)
Query: 15 LEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 71
LE+ESG + +K F +V +G WD K L D+ F + +QK+LE
Sbjct: 88 LEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFPDEKAVKAASFL-LLEQKFLEF 146
Query: 72 LDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIML 131
L A A+ L ++ + + + + L++ +F + + ++ ++RS +L
Sbjct: 147 LKVEKIADALRTLRNEMAPLRINTKRVHELASSLISPSSFISHTTSTPGKESVNSRSKVL 206
Query: 132 VELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTC 191
EL+ L+ A+ + +K RL L+ SL+ Q C +L+ DH C
Sbjct: 207 EELQTLLPASVIIPEK---------RLECLVENSLHIQRDSCVFHNTLDSDLSLYSDHQC 257
Query: 192 GQ 193
G+
Sbjct: 258 GK 259
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 30/117 (25%), Positives = 59/117 (50%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW 130
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WV90 | TPR1_ARATH | No assigned EC number | 0.8035 | 0.9818 | 0.9651 | no | no |
| Q94AI7 | TPL_ARATH | No assigned EC number | 0.8184 | 0.9918 | 0.9655 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1101 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-23 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-17 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 1e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-05 | |
| pfam10607 | 144 | pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif | 3e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.001 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 6e-24
Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 32/245 (13%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
V V +SPDG L ++++ G+ +R L+ H G V D+A S L
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-LK--GHTGPVRDVAASADGTYL- 66
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
+ DKTI++WD G GH + V SV + + + S++ D IK W +
Sbjct: 67 -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVE 123
Query: 529 NLGSRVDYEAPGRWCTTMAY----------SADGT------------RTYQGFRKRSLGV 566
W ++A+ S DGT T G
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS- 182
Query: 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626
V F + L++ D +IK WD+ + + L ++ S + F+ DG LLA + D
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLLASGSED 240
Query: 627 NGIKI 631
I++
Sbjct: 241 GTIRV 245
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-23
Identities = 64/325 (19%), Positives = 101/325 (31%), Gaps = 92/325 (28%)
Query: 349 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 408
+ F P + L GS + + KVWDL + +K
Sbjct: 13 TCVAFSPDGKLLA-------------TGSGDGTI----KVWDLETGELLRT---LKGHTG 52
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR---QHLE------------------ 447
V V S DG+ S ++++ G+ VR H
Sbjct: 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112
Query: 448 ------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 489
+ H VN +AFS V + D TIK+WD G
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF--VASSSQDGTIKLWDLRTGKCV 170
Query: 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 549
GH V SV + S++ DG IK W ++A+S
Sbjct: 171 ATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228
Query: 550 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDADGGLPAS 608
DG LA+G D +I+ WD+ + + + ++ +
Sbjct: 229 PDG----------------------YLLASGSEDGTIRVWDLRTGECVQTLSG----HTN 262
Query: 609 P--RIRFNKDGCLLAVSTNDNGIKI 631
+ ++ DG LA + D I+I
Sbjct: 263 SVTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 6e-21
Identities = 68/303 (22%), Positives = 105/303 (34%), Gaps = 68/303 (22%)
Query: 305 NLPVNVLPVSFTGHSH-------SHSHSQAFSTPEDLPKTV----------TRTLNQGSS 347
+L L + GH+ S + S D KT+ RTL +S
Sbjct: 37 DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD--KTIRLWDLETGECVRTLTGHTS 94
Query: 348 P-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 406
S+ F P +L + I +W+V + + C L+ D
Sbjct: 95 YVSSVAFSP-DGRILSSSSRDKTIKVWDVETGK--------------CLTTLRGH--TDW 137
Query: 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 466
VN V +SPDG+ + ++++ G V H G VN +AFS ++
Sbjct: 138 ---VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL---TGHTGEVNSVAFSPDGEK 191
Query: 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 526
L + D TIK+WD + G GHE V SV + + S + DG I+ W
Sbjct: 192 LL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL--LASGSEDGTIRVWD 247
Query: 527 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 586
T++A+S DG R + D +I+
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDG---------------------KRLASGSADGTIR 286
Query: 587 FWD 589
WD
Sbjct: 287 IWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.8 bits (216), Expect = 7e-18
Identities = 90/467 (19%), Positives = 170/467 (36%), Gaps = 55/467 (11%)
Query: 314 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGL 372
+ S + + LP + L S+ F P + LLL G++ G I L
Sbjct: 33 LGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKL 91
Query: 373 WEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLFGVAYSRHIV 431
W++ + E+L+ +L SV+++ SPDG+ +A S
Sbjct: 92 WDLDNGEKLI-----------------KSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134
Query: 432 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 491
+ + + ++ H V +AFS P+ +L D TIK+WD G
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLST 193
Query: 492 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 551
GH PV S+ + I S + DG I+ W G+ +
Sbjct: 194 LAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWDLST----------GKLLRS------ 236
Query: 552 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 611
T G + F + + D +I+ WD+ S L + +
Sbjct: 237 ---TLSGHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL-SV 290
Query: 612 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAA 671
F+ DG LLA ++D +++ G +LL + ++ +S + P S + + +
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 672 AATSAGLADRAASMVSIPGMNGDVRSLA--DVKPRITEESNDKS-KVWKLTELSEPNQCR 728
T R + + +V S++ ++ S D + ++W L+ S
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 729 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 775
++ L F+ G ++ + +S+ LW + + ++ S
Sbjct: 410 GHTSR-------VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-17
Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 32/203 (15%)
Query: 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV-- 502
+ H GGV +AF P+ +L + T D TIKVWD G +GH PV V
Sbjct: 2 RRTLKGHTGGVTCVAF-SPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 562
++ S + D I+ W D E RT G
Sbjct: 60 SADGT----YLASGSSDKTIRLW---------DLETGEC-----------VRTLTGHTSY 95
Query: 563 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 622
V F ++ D +IK WD+++ + LT++ S + F+ DG +A
Sbjct: 96 VSS-VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVAS 152
Query: 623 STNDNGIKILATSDGIRLLRTFE 645
S+ D IK+ G + + T
Sbjct: 153 SSQDGTIKLWDLRTG-KCVATLT 174
|
Length = 289 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-15
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 21 FFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAK 79
F K + + G+WD+ ++LS R S K+ FE+RKQK+LE + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 42/219 (19%), Positives = 84/219 (38%), Gaps = 29/219 (13%)
Query: 808 VPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 866
V C A S + + + SG G I ++++ T + + T +A D +A G
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70
Query: 867 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 926
D +I+++++ E L GH+ ++ +AFS +L SS D + VW
Sbjct: 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD--------- 121
Query: 927 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS---- 982
T + T ++ H D ++ + + +++ +K W R
Sbjct: 122 ---------VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172
Query: 983 -----APITHATFSCDSQLVYACFLDATVCVFSAANLKL 1016
+ FS D + + + D T+ ++ + K
Sbjct: 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.4 bits (176), Expect = 4e-13
Identities = 93/492 (18%), Positives = 169/492 (34%), Gaps = 102/492 (20%)
Query: 441 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAP 498
L + H + IAFS + L + D TIK+WD NG K + H++
Sbjct: 54 PDLSSLLLRGHEDSITSIAFSPDGELLL--SGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111
Query: 499 VYSVCPHHKE-NIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTY 556
V + + N + S++LDG +K W G + E T++A+S DG
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG---- 167
Query: 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 616
K + D +IK WD+ + + L+++
Sbjct: 168 ----------------KLLASGSSLDGTIKLWDLRTGKPLSTLAGH-----------TDP 200
Query: 617 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 676
LA S + + +SDG L S S +S +S S
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS---------- 250
Query: 677 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 736
+G + + S+ ++W L S + S
Sbjct: 251 --------------PDGSLL--------ASGSSDGTIRLWDLRSSSSLLRTLSGHS---- 284
Query: 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796
+ + + F+ G + + +S+ LW + S
Sbjct: 285 --SSVLSVAFSPDGKLLASGSSDGTVRLW-------DLETGKLLSS-------------- 321
Query: 797 NDVTDSNPEEAVPCFALSKNDSYVMSASG--GKISLFNMMTFKTMATFMPPPPAATFLAF 854
+T E V + S + S ++S G I L+++ T K + T ++F
Sbjct: 322 --LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSF 378
Query: 855 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 914
P D +++ G D +++++++ + L GH+ R+T L FS L S +D+ +
Sbjct: 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437
Query: 915 VWSSDGWEKQKN 926
+W K +
Sbjct: 438 LWDLKTSLKSVS 449
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-13
Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 14/170 (8%)
Query: 850 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 909
T +AF P D ++A G D +I+++++ E+ LKGH+ + +A S L S +
Sbjct: 13 TCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS 71
Query: 910 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET 967
D + +W + ++ TG T S V F D L + + +++
Sbjct: 72 DKTIRLWDL-----ETGECVRTLTGHTSYVSS---VAFSPDG-RILSSSSRDKTIKVWDV 122
Query: 968 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1017
+C+ R + + FS D V + D T+ ++ K
Sbjct: 123 ETGKCLT--TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 9e-13
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 805 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 863
V A S + ++S+S G I L+++ T K + T +AF P D ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235
Query: 864 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
G +D +I+++++R E L GH+ +T LA+S L S AD + +W
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 16/238 (6%)
Query: 785 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFM 843
++W +G ++ T V A S + +Y+ S S I L+++ T + + T
Sbjct: 34 KVWDLETGELLR---TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90
Query: 844 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV 903
+ +AF P D I++ D +I++++V + + L+GH+ + +AFS
Sbjct: 91 GHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149
Query: 904 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQL 962
+ SS D + +W + TG T S V F D L + +
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATL-----TGHTGEVNS---VAFSPDGEKLLSSSSDGTI 201
Query: 963 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1020
+++ + +C+ R + FS D L+ + D T+ V+ + +
Sbjct: 202 KLWDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.0 bits (167), Expect = 5e-12
Identities = 69/303 (22%), Positives = 106/303 (34%), Gaps = 54/303 (17%)
Query: 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW--EVGSRERLVLR-------- 384
K ++ S+ F P L+ G++ G I LW G R L
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247
Query: 385 ----------------NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 428
++WDL + S L+ + SV V +SPDG L S
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLR--TLSGHSSSVLSVAFSPDGKLLASGSSD 305
Query: 429 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488
V+++ G + L + H G V+ ++FS P+ L V DD TI++WD G
Sbjct: 306 GTVRLWDLETGKLLSS-LTLKGHEGPVSSLSFS-PDGSLLVSGGSDDGTIRLWDLRTGKP 363
Query: 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 548
EGH V SV + ST DG ++ W + + T++ +
Sbjct: 364 LKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420
Query: 549 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 608
S DG + D +I+ WD+ + S DG + AS
Sbjct: 421 SPDG---------------------KSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLAS 459
Query: 609 PRI 611
Sbjct: 460 KSS 462
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.2 bits (152), Expect = 4e-10
Identities = 56/318 (17%), Positives = 111/318 (34%), Gaps = 21/318 (6%)
Query: 786 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMT-FKTMAT 841
LW +G + + + S + + ++ AS G + L+++ T K + T
Sbjct: 91 LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150
Query: 842 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 901
+ T LAF P + + D +I+++++R + S L GH+ ++ LAFS
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210
Query: 902 N-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 960
++ S +D + +W K L + ++ F D
Sbjct: 211 GLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSVVSS-------FSPDGSLLASGSSD 262
Query: 961 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1020
+ S+ + FS D +L+ + D TV ++ KL +
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322
Query: 1021 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNG 1080
+ VSS ++ P + G DG + +++ + + +
Sbjct: 323 TLKGH-EGPVSS-------LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL 374
Query: 1081 STSSMPATPPVGGSGSDQ 1098
S S P V +D
Sbjct: 375 SVSFSPDGRVVSSGSTDG 392
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 11/134 (8%)
Query: 885 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 944
LKGH+ +T +AFS +L + D + VW + E R L+ TG
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLKGHTG------PVRD 56
Query: 945 VQFHQDQIHFLVVHE-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1003
V D + + +++ ECV+ S ++ FS D +++ + D
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFSPDGRILSSSSRD 114
Query: 1004 ATVCVFSAANLKLR 1017
T+ V+ K
Sbjct: 115 KTIKVWDVETGKCL 128
|
Length = 289 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-06
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482
+ H G V +AFS L + DD T++VWD
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
E+ LKGH+ +T +AFS L S D + +W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482
+ H G V +AFS K L + DD TIK+WD
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
++ LKGH+ +T +AFS N+L S D + VW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 22 FFNMKYFEDEVHNGNWDDVEKYL----SGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 77
F + + NG+ ++ ++ K++ N + FE+R Q+++E + +
Sbjct: 2 FKERNKIRESLLNGDLEEALEWCNENKPELLKINSN-----LEFELRLQQFIELIREGKI 56
Query: 78 AKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD 122
+A+E ++L F FNE+ KEI +L+ L F + S Y
Sbjct: 57 LEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDSSPYKS 99
|
RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 25/165 (15%)
Query: 328 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK 387
+ + S+ F P L+ G++ G I LW++ + + L
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG- 369
Query: 388 VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE 447
+V V +SPDG + + V+++ G +R
Sbjct: 370 -------------------HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR---N 407
Query: 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 492
+D H V + FS + + D TI++WD K F
Sbjct: 408 LDGHTSRVTSLDFS--PDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1101 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.98 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.87 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.86 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.84 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.8 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.79 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.79 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.78 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.78 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.76 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.76 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.75 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.75 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.73 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.7 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.7 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.7 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.67 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.66 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.65 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.65 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.65 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.63 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.63 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.63 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.62 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.6 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.6 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.6 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.6 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.59 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.58 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.51 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.5 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.48 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.47 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.46 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.45 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.44 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.44 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.43 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.43 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.42 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.42 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.42 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.42 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.41 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.4 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.4 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.4 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.4 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.39 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.39 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.39 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.36 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.35 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.34 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.33 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.31 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.31 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.3 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.25 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.24 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.22 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.22 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.21 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.21 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.19 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.16 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.15 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.14 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.14 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.11 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.1 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.07 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.07 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.04 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.01 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.93 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.89 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.87 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.84 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.82 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.81 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.81 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.81 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.8 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.79 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.78 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.77 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.76 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.76 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.72 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.72 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.72 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.71 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.68 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.65 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.62 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.61 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.6 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.58 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.55 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.54 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.53 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.52 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.52 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.52 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.5 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.5 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.46 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.44 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.38 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.35 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.35 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.33 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.32 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.3 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 98.23 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.23 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.22 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.16 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.14 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.13 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.09 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.08 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.06 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.05 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.05 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.04 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.02 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.01 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.0 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.0 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 97.99 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.97 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.96 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.94 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.9 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.9 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.85 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.81 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.8 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.8 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.8 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.77 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.76 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.75 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.71 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.62 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.55 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.54 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.54 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.53 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.44 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.39 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.36 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.35 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.34 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.3 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.29 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.28 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.25 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.18 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.16 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.1 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.08 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.07 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.05 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.04 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.95 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.95 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.87 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.82 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.76 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.65 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.63 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.63 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.61 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.59 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.52 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.49 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.44 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.43 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.43 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.41 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.41 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.4 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.39 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.37 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.34 | |
| PRK10115 | 686 | protease 2; Provisional | 96.31 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.24 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.2 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.08 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 96.04 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.95 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.95 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.84 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.8 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.79 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.78 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.73 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.58 | |
| PRK10115 | 686 | protease 2; Provisional | 95.51 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.46 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.39 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.16 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.12 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.02 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.98 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.85 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.83 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.58 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.52 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.4 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.27 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.22 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.2 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.13 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 93.97 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.82 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.82 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.75 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.53 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.41 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.32 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 93.05 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.02 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.89 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.75 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 92.74 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 92.66 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.53 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.48 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 92.47 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.25 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.22 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.18 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 91.88 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 91.72 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.5 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.43 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.43 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.38 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 91.23 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 91.21 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.81 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 90.17 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 90.08 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 90.04 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 90.02 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.86 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 89.76 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.45 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.27 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.05 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 88.89 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 88.66 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 88.58 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 87.9 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 87.7 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 87.06 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 85.99 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 85.74 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 85.62 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 85.61 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 84.69 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 84.5 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 84.27 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 84.23 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 84.23 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 83.76 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 83.3 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 83.11 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 82.93 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 82.81 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 82.69 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 82.45 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 82.28 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 82.16 | |
| PLN02193 | 470 | nitrile-specifier protein | 82.09 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 82.08 | |
| PLN02153 | 341 | epithiospecifier protein | 82.04 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 81.79 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 81.64 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 81.29 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 81.17 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 80.46 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 80.42 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 80.27 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=523.38 Aligned_cols=479 Identities=22% Similarity=0.338 Sum_probs=391.1
Q ss_pred hhHHHHHHHH-------------HhHhcCcccc---HHHHHHHhhcCChHHHHHHhcccccccCccccceehhhhHHhHH
Q 001318 5 SRELVFLILQ-------------LEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 68 (1101)
Q Consensus 5 ~~e~vrli~q-------------l~~esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 68 (1101)
+.|+|||+.| ||.|||+.+. ++.|.++||+|+|+.++..+..+. +++...+.++.||+.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 4599999999 9999999996 999999999999999999999984 4445556679999999999
Q ss_pred HHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCCchHHHHHHHHHHhhcccCCccccccc
Q 001318 69 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKL 148 (1101)
Q Consensus 69 lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~ 148 (1101)
||++..|....|+.+||+++.+|. ++.+++++|+.-|..++.....+...-......|.+|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 999999999999999999999988 59999999998887776553333222223578899999999999999999
Q ss_pred cCCCCChHHHHHHHHHhHHHHHHhccCCCCCCCCcccccccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q 001318 149 QFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQP 228 (1101)
Q Consensus 149 ~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~ 228 (1101)
+|++||++||+||++||+++|.||| ..+..|||+||+|++ .++|
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~---------------~qip---------------- 213 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR---------------LQIP---------------- 213 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc---------------ccCC----------------
Confidence 9999999999999999999999999 477799999999999 6666
Q ss_pred CCCCCCCCccccccCCCCCcCCCcccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCcccccccccCCCCcccccCCc
Q 001318 229 TPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPV 308 (1101)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 308 (1101)
.. + .
T Consensus 214 ~q----------------------------------------------------------------------t--~---- 217 (519)
T KOG0293|consen 214 SQ----------------------------------------------------------------------T--W---- 217 (519)
T ss_pred ch----------------------------------------------------------------------h--h----
Confidence 10 0 0
Q ss_pred ccccccccCCCCCCCcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeee
Q 001318 309 NVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV 388 (1101)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~ 388 (1101)
T Consensus 218 -------------------------------------------------------------------------------- 217 (519)
T KOG0293|consen 218 -------------------------------------------------------------------------------- 217 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEE
Q 001318 389 WDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468 (1101)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~ 468 (1101)
.++..|++.|+.+.||++|+|||+++.|.+..+|++.....++..+++.+|..+|..+.||||++ +
T Consensus 218 ------------qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--y 283 (519)
T KOG0293|consen 218 ------------QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--Y 283 (519)
T ss_pred ------------hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--e
Confidence 02455666666666666677777777777777776665555666678999999999999999999 7
Q ss_pred EEEecCCCcEEEEeCCCCceEEEec-CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEE
Q 001318 469 VITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 547 (1101)
Q Consensus 469 l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 547 (1101)
|++|+.|..+++||+.+|.+...+. +|...+.+++|. +||..+++|+.|++|..||++....
T Consensus 284 LlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~--pDg~~~V~Gs~dr~i~~wdlDgn~~--------------- 346 (519)
T KOG0293|consen 284 LLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWC--PDGFRFVTGSPDRTIIMWDLDGNIL--------------- 346 (519)
T ss_pred EEecCchHheeeccCCcchhhhhcccCcCCCcceeEEc--cCCceeEecCCCCcEEEecCCcchh---------------
Confidence 9999999999999999999988774 456788999985 5668899999999999999985331
Q ss_pred EccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001318 548 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 627 (1101)
Q Consensus 548 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 627 (1101)
..+.+.+...+..+++++||+++++.+.|..|++++.++......+..+. .+++.++|.|++++++.-.+.
T Consensus 347 ------~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 347 ------GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSISKDGKLALVNLQDQ 417 (519)
T ss_pred ------hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEcCCCcEEEEEcccC
Confidence 22333334456667777777889999999999999998877665554333 599999999999999999999
Q ss_pred cEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeec
Q 001318 628 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 707 (1101)
Q Consensus 628 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 707 (1101)
.+++||++.. ..++.+.||...
T Consensus 418 ei~LWDl~e~-~lv~kY~Ghkq~--------------------------------------------------------- 439 (519)
T KOG0293|consen 418 EIHLWDLEEN-KLVRKYFGHKQG--------------------------------------------------------- 439 (519)
T ss_pred eeEEeecchh-hHHHHhhccccc---------------------------------------------------------
Confidence 9999999865 556655554321
Q ss_pred cCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccc
Q 001318 708 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW 787 (1101)
Q Consensus 708 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw 787 (1101)
.+++
T Consensus 440 -------------------------------------------~fiI--------------------------------- 443 (519)
T KOG0293|consen 440 -------------------------------------------HFII--------------------------------- 443 (519)
T ss_pred -------------------------------------------ceEE---------------------------------
Confidence 1111
Q ss_pred cCCCccccccccCCCCCCCCeeEEEEe-cCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEE
Q 001318 788 QPPSGIMMTNDVTDSNPEEAVPCFALS-KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 865 (1101)
Q Consensus 788 ~~~~g~~~~~~~~~~~~~~~i~~~~~s-~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg 865 (1101)
.-||. .+..++++|+ |++|+||+..+++.+.++.||...|+|++|+|.+..++|+|
T Consensus 444 ----------------------rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 444 ----------------------RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASA 501 (519)
T ss_pred ----------------------EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhcc
Confidence 11111 2456899999 99999999999999999999999999999999999999999
Q ss_pred eccCeEEEEEeec
Q 001318 866 MDDSSIQIYNVRV 878 (1101)
Q Consensus 866 ~~dg~v~vwd~~~ 878 (1101)
++||+|+||....
T Consensus 502 sDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 502 SDDGTIRIWGPSD 514 (519)
T ss_pred CCCCeEEEecCCc
Confidence 9999999998653
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-57 Score=479.77 Aligned_cols=574 Identities=15% Similarity=0.237 Sum_probs=471.6
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCccee-EeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCC
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 429 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 429 (1101)
++|+++|+. |++... ..|.+-|+.+++.. .. .-......|++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~~-L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQH-LYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCE-EEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 899999995 666553 46889999998773 21 2344567899999999999999999999
Q ss_pred eEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecC
Q 001318 430 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 508 (1101)
Q Consensus 430 ~i~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 508 (1101)
.+++|++.+++.++ .++. |.+||.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.+++|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 4666 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEecCCcEEEEecCCCCc-eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEE
Q 001318 509 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 587 (1101)
Q Consensus 509 ~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 587 (1101)
+...|++|..|+++++||+..... ...+..|...|+++.+++|+. .++++|.|..+.+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV 218 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence 888899999999999999996544 667788888888888877764 6999999999999
Q ss_pred EECCCCceeEEEcCCCCCCCcCeEEEccC-----CCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcc
Q 001318 588 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 662 (1101)
Q Consensus 588 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1101)
||+...+...+++.... +-++.+-++ |.++++.+.+|.+++||.+++ .+.........+ .+
T Consensus 219 wd~~~~~~l~~lp~ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~-~~~~~~~~~~~~----------e~ 284 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESG-KCVYKQRQSDSE----------EI 284 (775)
T ss_pred eehhhhhhhheechhhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccc-hhhhhhccCCch----------hh
Confidence 99988887777765544 666777776 679999999999999999988 333322211100 00
Q ss_pred cccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceE
Q 001318 663 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 742 (1101)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 742 (1101)
. ..........++....|..+.++|.++.....++. +....|.
T Consensus 285 -----------------------------~-~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv-------G~ndEI~ 327 (775)
T KOG0319|consen 285 -----------------------------D-HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV-------GYNDEIL 327 (775)
T ss_pred -----------------------------h-cceeccccCceEEEEccceEEEEEccccEEehhhc-------CCchhhe
Confidence 0 11112233455566667889999877655444433 4678888
Q ss_pred EEEEc-CCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEE
Q 001318 743 RLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 821 (1101)
Q Consensus 743 ~l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la 821 (1101)
.+.|- |+.++++++++.+.+++|++.+.. .. .+. +|...|.++....+|-+|+
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~----------------------c~--ii~--GH~e~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSY----------------------CQ--IIP--GHTEAVLSLDVWSSGDLLA 381 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCc----------------------eE--EEe--CchhheeeeeecccCcEEE
Confidence 88874 577889999999999999763211 10 133 3999999999888889999
Q ss_pred EEe-CCeEEEEECCCC----ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce---------EeeeecC
Q 001318 822 SAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKG 887 (1101)
Q Consensus 822 ~~s-dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------~~~~l~~ 887 (1101)
+|+ |.++++|.++++ -++....+|.+.|.+++++.....+|++++.|+++++|++...+ +..+...
T Consensus 382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 999 999999988433 34556789999999999998666899999999999999997621 1123457
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEE
Q 001318 888 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 966 (1101)
Q Consensus 888 h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd 966 (1101)
|...|++|+.+|+.+++||||.|++.+||+++. .....++.||.. .|.++.|++..+.+|+ +.|++|+||.
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----~~l~~vLsGH~R---Gvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----LRLLGVLSGHTR---GVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccC-----ceEEEEeeCCcc---ceEEEEeccccceeEeccCCceEEEEE
Confidence 999999999999999999999999999999985 446778889886 8999999999999999 6999999999
Q ss_pred cCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 967 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 967 ~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
+.+..|++++. ||...|..+.|-.+|+.|++++.||.|++|++.++++++.+. .|.. .|+ +++-++ +
T Consensus 534 is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H~D-rvW--aL~~~~-~ 600 (775)
T KOG0319|consen 534 ISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AHND-RVW--ALSVSP-L 600 (775)
T ss_pred eccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hccc-eeE--EEeecC-c
Confidence 99999999997 999999999999999999999999999999999999999887 4433 488 777777 5
Q ss_pred CCEEEEEecCCcEEEEeccCCC
Q 001318 1047 PNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
..+++||+.||.|.+|.=.+.+
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cceeEecCCCeEEEEeecCcHH
Confidence 6799999999999999865544
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=443.92 Aligned_cols=477 Identities=20% Similarity=0.308 Sum_probs=391.9
Q ss_pred hhHHHHHHHH-------------HhHhcCcccc----HHHHHHHhhcCChHHHHHHhcccccccCccccceehhhhHHhH
Q 001318 5 SRELVFLILQ-------------LEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 67 (1101)
Q Consensus 5 ~~e~vrli~q-------------l~~esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 67 (1101)
+.||||||+| ||+|++++|| +..|-+.|-+|+||.+++.++.| ++|++ -+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHH
Confidence 4589999999 9999999998 99999999999999999999999 88877 578899999
Q ss_pred HHHHhcCCCHHHHHHHHHhc--cccccccCHHHHHHhhhhhcccCcchhhhhhccCC-chH-HHHHHHHHHhhcccCCcc
Q 001318 68 YLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-TKS-ARSIMLVELKKLIEANPL 143 (1101)
Q Consensus 68 ~lEll~~~~~~~Al~~L~~~--l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-~~~-~r~~l~~~l~~~i~~~~~ 143 (1101)
.|||+|.++...|..+||+. +.-|+..++++|-+|..||..+.++..+. |++ .++ .|..+.+.|...+..
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~Ea---Y~dssKEkrRa~IAQ~ls~EV~V--- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREA---YGDSSKEKRRAVIAQALSGEVHV--- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhh---cCcchHHHHHHHHHHHhcCceEE---
Confidence 99999999999999999984 77778889999999999999999998887 666 444 458888888887777
Q ss_pred ccccccCCCCChHHHHHHHHHhHHHHHHhccCCCCCCCCcccccccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 001318 144 FRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH 223 (1101)
Q Consensus 144 ~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~ 223 (1101)
+||.||..||.||++||+.+ |-+|++..+|
T Consensus 155 ---------VppSRLlaLlGQaLKWQqHQ------------------------------------GLLPPGt~iD----- 184 (508)
T KOG0275|consen 155 ---------VPPSRLLALLGQALKWQQHQ------------------------------------GLLPPGTTID----- 184 (508)
T ss_pred ---------cChHHHHHHHHHHhhhHhhc------------------------------------CCCCCCceee-----
Confidence 99999999999999999872 6788888888
Q ss_pred CCCCCCCCCCCCCccccccCCCCCcCCCcccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCcccccccccCCCCccc
Q 001318 224 GPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDE 303 (1101)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1101)
+|++..+.. ...+|
T Consensus 185 -LFRGkAA~K-----------------------------------------------------------------~~~Ee 198 (508)
T KOG0275|consen 185 -LFRGKAAMK-----------------------------------------------------------------DQEEE 198 (508)
T ss_pred -eccchhhhh-----------------------------------------------------------------hhHhh
Confidence 888775410 00111
Q ss_pred ccCCcccccccccCCCCCCCcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEe
Q 001318 304 INLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL 383 (1101)
Q Consensus 304 v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~ 383 (1101)
. |+..- .-...++.++.+.|..|||||+| |++|+.||.|.|||..+|+....
T Consensus 199 ~----------~Pt~l-----------------~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKD 250 (508)
T KOG0275|consen 199 R----------YPTQL-----------------ARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKD 250 (508)
T ss_pred h----------chHHh-----------------hhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhh
Confidence 1 00000 00114567788999999999997 99999999999999999987653
Q ss_pred eeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC
Q 001318 384 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 463 (1101)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d 463 (1101)
..++ ....+.-|..+|.|+.||.|...||+|+.||.|+||.+.+|.+++.+ -.+|...|+|+.||.|
T Consensus 251 LkYQ-----------Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF--drAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 251 LKYQ-----------AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF--DRAHTKGVTCLSFSRD 317 (508)
T ss_pred hhhh-----------hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh--hhhhccCeeEEEEccC
Confidence 2221 11246778999999999999999999999999999999999998853 2389999999999999
Q ss_pred CCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCC--C
Q 001318 464 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG--R 541 (1101)
Q Consensus 464 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~ 541 (1101)
+. .+++++.|.+++|.-+++|++++.|+||...|+...| .++|+.+++++.||+|++|+..+.++..++.... .
T Consensus 318 ~S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~ 393 (508)
T KOG0275|consen 318 NS--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDY 393 (508)
T ss_pred cc--hhhcccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcc
Confidence 99 5899999999999999999999999999999999987 5777999999999999999999999888776543 3
Q ss_pred ceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcC-CCCCCCcCeEEEccCCCEE
Q 001318 542 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDGCLL 620 (1101)
Q Consensus 542 ~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l 620 (1101)
.|.++..-|... ..++++...++|+|-++ .|+.+..+.. ....+...+++.+|.|.++
T Consensus 394 ~vnsv~~~PKnp--------------------eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewi 452 (508)
T KOG0275|consen 394 PVNSVILLPKNP--------------------EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWI 452 (508)
T ss_pred cceeEEEcCCCC--------------------ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEE
Confidence 455555555443 57888999999999998 5777777753 2233456788899999999
Q ss_pred EEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccC
Q 001318 621 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLAD 700 (1101)
Q Consensus 621 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1101)
.+.+.|+.++.+.+.+| .+.+.+.-|...+.. ...-|.
T Consensus 453 YcigED~vlYCF~~~sG-~LE~tl~VhEkdvIG-----------------------------------------l~HHPH 490 (508)
T KOG0275|consen 453 YCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIG-----------------------------------------LTHHPH 490 (508)
T ss_pred EEEccCcEEEEEEeecC-ceeeeeecccccccc-----------------------------------------cccCcc
Confidence 99999999999999998 666666655554332 222345
Q ss_pred ccceeeccCCCcceeee
Q 001318 701 VKPRITEESNDKSKVWK 717 (1101)
Q Consensus 701 ~~~l~~~~~d~~i~~w~ 717 (1101)
.+.+++.+.||.+++|.
T Consensus 491 qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cchhhhhcccchhhhcC
Confidence 67889999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=471.20 Aligned_cols=546 Identities=14% Similarity=0.196 Sum_probs=452.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccC-CCCCeEEEEEecCCCeE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l 422 (1101)
..+.+++++.+||+++ |++++....+++|++.+++.+.. .+. |+++|.-++|+|.|.+|
T Consensus 61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll 120 (775)
T KOG0319|consen 61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL 120 (775)
T ss_pred chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence 5678999999999995 88999999999999999977653 445 99999999999999999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce-EEEecCcccCeEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVYS 501 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~ 501 (1101)
|+|+.|+.|+|||+..+.+.. .|+||.+.|.++.|.|+-...+|++|+.|+++++||+.++.. +.++..|...|++
T Consensus 121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 999999999999999988666 799999999999999998766789999999999999996554 8888999999999
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
+.|. +|+..+++++.|..+.+||+...+....++.. ..+.++.+.+++. ...+.+++++|.
T Consensus 198 L~~~--~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~----------------~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 198 LAFS--EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREEL----------------GGKGEYIITAGG 258 (775)
T ss_pred eeec--cCCceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhc----------------CCcceEEEEecC
Confidence 9985 45678999999999999999665555444332 2344444444311 011468999999
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 582 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
+|.+++||.++++++....... ...+..+...+....++..+.|..+.++|.++. +..+.+.|....+. .
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~--------D 328 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEIL--------D 328 (775)
T ss_pred CceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhhe--------e
Confidence 9999999999998877665432 223666666666666777778899999998888 77888877777654 2
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
+...+ ++...+++++..+.+|++++.+.... .+ .+|...|
T Consensus 329 m~~lG--------------------------------~e~~~laVATNs~~lr~y~~~~~~c~----ii----~GH~e~v 368 (775)
T KOG0319|consen 329 MKFLG--------------------------------PEESHLAVATNSPELRLYTLPTSYCQ----II----PGHTEAV 368 (775)
T ss_pred eeecC--------------------------------CccceEEEEeCCCceEEEecCCCceE----EE----eCchhhe
Confidence 22222 56789999999999999987764332 22 5699999
Q ss_pred EEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC-CEE
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYV 820 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg-~~l 820 (1101)
.++....+|..|++++.|.++++|.++.... ..... ....+|.+.|.+++++..+ .+|
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~-------------------~~~~~--a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCS-------------------KSLCV--AQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcc-------------------hhhhh--hhhcccccccceeeecccCccEE
Confidence 9999888888999999999999998732111 00111 1223599999999998765 478
Q ss_pred EEEe-CCeEEEEECCCCc---------eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc
Q 001318 821 MSAS-GGKISLFNMMTFK---------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 821 a~~s-dg~i~vwd~~~~~---------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
++++ |.++++|++...+ +..+...|...|++++++| +.+++|+|+.|.+.+||+++......++.||..
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 8888 9999999987511 1123356899999999999 889999999999999999999999999999999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCC
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 969 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~ 969 (1101)
.|++|.|+|..+.|+|+|.|++|+||.+++ ..+++++.||.. .|..+.|-.+|+.|++ +.||-+++|++++
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 999999999999999999999999999998 558999999985 8999999999999999 6999999999999
Q ss_pred ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 970 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 970 ~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
++|+.++. +|.+.|++++.+|++.++++|+.||.|.+|.=.|
T Consensus 579 ~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 579 NECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999886 8999999999999999999999999999996443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=444.03 Aligned_cols=572 Identities=18% Similarity=0.294 Sum_probs=448.8
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
...+.+...|++++.||+|.. +++-...|.+.+-++.....+++++| ...|.|+.||||
T Consensus 49 Tl~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~~i~fSPn 107 (893)
T KOG0291|consen 49 TLPLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVGAIKFSPN 107 (893)
T ss_pred eEEeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee--------------------cCccceEEECCC
Confidence 334568999999999999995 66667889999999988888876554 458999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCce-----eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce--EEE
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYI 491 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~ 491 (1101)
|+++|+|.. +.+.||....... +....++.+|-..|.++.|+.|.+ +|++|+.|.++++|+++..+- .+.
T Consensus 108 g~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~ 184 (893)
T KOG0291|consen 108 GKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYA 184 (893)
T ss_pred CcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEe
Confidence 999998864 5699998765322 334456789999999999999999 899999999999999987665 567
Q ss_pred ecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee-----cC---------CCCceeEEEEccCCceEEe
Q 001318 492 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EA---------PGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 492 ~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-----~~---------~~~~v~~~~~s~~~~~~~~ 557 (1101)
+.+|.+.|.+.-| ..+...+++.+.||.+.+|..+.......- .+ ....+....|..-. +.+-
T Consensus 185 l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~-k~~l 261 (893)
T KOG0291|consen 185 LNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK-KHYL 261 (893)
T ss_pred ccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE-eeee
Confidence 8999999987666 445578999999999999987732111000 00 00011111111110 1122
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC-CcEEEEEecC
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSD 636 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~ 636 (1101)
......+.+.+|++..+.|++|-..|...+|++....+++.+....+ .|..++|+..|.+|+.|+.. |.+.+|+..+
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 22235788999999999999999999999999999999999986544 68999999999999999765 7899998765
Q ss_pred ccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee
Q 001318 637 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 716 (1101)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 716 (1101)
. ..+...
T Consensus 340 E-sYVlKQ------------------------------------------------------------------------ 346 (893)
T KOG0291|consen 340 E-SYVLKQ------------------------------------------------------------------------ 346 (893)
T ss_pred c-ceeeec------------------------------------------------------------------------
Confidence 5 221111
Q ss_pred eccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccc
Q 001318 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~ 796 (1101)
++|...+.+++++|||+++++++.||.|+|||.. +|.+..
T Consensus 347 ------------------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~----------------------SgfC~v 386 (893)
T KOG0291|consen 347 ------------------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ----------------------SGFCFV 386 (893)
T ss_pred ------------------cccccceeeEEECCCCcEEEeccCCCcEEEEecc----------------------CceEEE
Confidence 3488899999999999999999999999999873 344332
Q ss_pred cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEEEEEeccC-eEEE
Q 001318 797 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDS-SIQI 873 (1101)
Q Consensus 797 ~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg-~v~v 873 (1101)
. + ..|.+.|+.+.|+..|+.+++.+ ||+|+.||+...+..++|.... -...|++..| .|.++..|+.|. .|+|
T Consensus 387 T-F--teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 387 T-F--TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFV 462 (893)
T ss_pred E-e--ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEE
Confidence 2 2 23999999999999999999999 9999999999999999997654 3577899999 899999998876 8999
Q ss_pred EEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 874 YNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 874 wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
|++++|+++..+.||.++|.+++|+|+|..|+|+|+|++||+||+-.... ....+... ..+..++|+|||+.
T Consensus 463 WS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-~vEtl~i~-------sdvl~vsfrPdG~e 534 (893)
T KOG0291|consen 463 WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-TVETLEIR-------SDVLAVSFRPDGKE 534 (893)
T ss_pred EEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc-eeeeEeec-------cceeEEEEcCCCCe
Confidence 99999999999999999999999999999999999999999999876321 12223322 36799999999999
Q ss_pred EEE-EeCCeEEEEEcCCceeeeeccCC------------------CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 954 FLV-VHETQLAIFETTKLECVKQWVPR------------------ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 954 la~-~~d~~v~vwd~~~~~~~~~~~~~------------------~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
|++ .-||+|.+||.+.+.++..+... ......+.+++|+||.++++|+....|++|++.++
T Consensus 535 laVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 535 LAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 999 68999999999887766443321 12467899999999999999999999999999999
Q ss_pred eeeeecCCCccc--------------------------------------C--------CCCCCCCccceEEEEeCCCCC
Q 001318 1015 KLRCRINPSAYL--------------------------------------P--------AGVSSSNVHPLVIAAHPQEPN 1048 (1101)
Q Consensus 1015 ~~~~~~~~~~~~--------------------------------------~--------~~~~~~~v~~~~i~~~~~d~~ 1048 (1101)
.++++++.+... | ..+....|...++.|+| .|+
T Consensus 615 vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgr 693 (893)
T KOG0291|consen 615 VLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGR 693 (893)
T ss_pred heeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECC-CcC
Confidence 988877532210 0 01122246677999999 578
Q ss_pred EEEEEecCCcEEEEeccC
Q 001318 1049 EFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1049 ~l~s~~~dg~v~vW~~~~ 1066 (1101)
-+++++..| |.|+.+.+
T Consensus 694 aFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 694 AFAAATTEG-LLIYSLDT 710 (893)
T ss_pred eeeeecccc-eEEEecCC
Confidence 888888777 56777744
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=414.00 Aligned_cols=573 Identities=14% Similarity=0.148 Sum_probs=431.9
Q ss_pred EEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeE
Q 001318 352 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 431 (1101)
Q Consensus 352 ~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i 431 (1101)
.-.|.|+.++.+.+ ..|.+-+++...... ++..|...++-..|||.|-|+|+|...|+|
T Consensus 25 g~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~v 83 (603)
T KOG0318|consen 25 GGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGKV 83 (603)
T ss_pred ccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCcE
Confidence 34566666777655 678888887765543 588999999999999999999999999999
Q ss_pred EEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEe-cCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCc
Q 001318 432 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 510 (1101)
Q Consensus 432 ~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 510 (1101)
+|||....+.+ ...+++.-.++|..++|+.|+++ ++++| +.++..+++-.++|..+..+.||...|+++.|-++..
T Consensus 84 RIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP- 160 (603)
T KOG0318|consen 84 RIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP- 160 (603)
T ss_pred EEEeccCccee-eeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCc-
Confidence 99998874433 22356677899999999999996 33333 3444555555568889999999999999999866543
Q ss_pred cEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001318 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 590 (1101)
Q Consensus 511 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1101)
-.+++|+.|++|.+|+-..-+-...+..|...|.++.|+|| |+++++++.||.|.+||-
T Consensus 161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD---------------------G~~Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD---------------------GSRFATAGSDGKIYIYDG 219 (603)
T ss_pred eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC---------------------CCeEEEecCCccEEEEcC
Confidence 57999999999999965544444444555555555555555 468999999999999999
Q ss_pred CCCceeEEEc-CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhh
Q 001318 591 DSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAA 669 (1101)
Q Consensus 591 ~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1101)
.+|+.+..+. ...|.+.|.+++|+||++.+++.+.|.+++|||+.+. .+++++.-... +.
T Consensus 220 ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~-v~----------------- 280 (603)
T KOG0318|consen 220 KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGST-VE----------------- 280 (603)
T ss_pred CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCc-hh-----------------
Confidence 9999999997 3345568999999999999999999999999999988 66655532111 00
Q ss_pred hhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCC
Q 001318 670 AAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 749 (1101)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 749 (1101)
...+........|++.+.+|.+.+++.......... .+|...|++++.+++
T Consensus 281 ----------------------dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i-------~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 281 ----------------------DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI-------SGHNKSITALTVSPD 331 (603)
T ss_pred ----------------------ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee-------cccccceeEEEEcCC
Confidence 111112223678899999999999998875522211 579999999999999
Q ss_pred CceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEE
Q 001318 750 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKIS 829 (1101)
Q Consensus 750 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~ 829 (1101)
+++|++++.||.|.-|+...+ ..- .+.+..|...|.+++.+..+.++.++-|.+++
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g----------------------~~~--~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~ 387 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSG----------------------TSD--RLAGKGHTNQIKGMAASESGELFTIGWDDTLR 387 (603)
T ss_pred CCEEEeeccCceEEEEecCCc----------------------ccc--ccccccccceEEEEeecCCCcEEEEecCCeEE
Confidence 999999999999999987432 211 13334599999999999888888777799999
Q ss_pred EEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEE
Q 001318 830 LFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS 907 (1101)
Q Consensus 830 vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~ 907 (1101)
+.++........ ++ ......+++..+ ++.+++.++.++.+.+=|...-. .+. -.-...+++++|++..++.|
T Consensus 388 ~~~~~~~~~t~~~~~~-lg~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~~~---~~~-~~y~~s~vAv~~~~~~vaVG 461 (603)
T KOG0318|consen 388 VISLKDNGYTKSEVVK-LGSQPKGLAVLS-DGGTAVVACISDIVLLQDQTKVS---SIP-IGYESSAVAVSPDGSEVAVG 461 (603)
T ss_pred EEecccCcccccceee-cCCCceeEEEcC-CCCEEEEEecCcEEEEecCCcce---eec-cccccceEEEcCCCCEEEEe
Confidence 999875443322 12 123344888888 66677666666555554443222 111 12346789999999999999
Q ss_pred eCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCCee
Q 001318 908 GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPIT 986 (1101)
Q Consensus 908 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~ 986 (1101)
+.|+.|+||.+...+......... |. +.|+.++||||+.+||++ ..+.+.+||+.+.+.... .-.-|...|.
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~~~~---h~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~FHtakI~ 534 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAKLLE---HR---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAFHTAKIN 534 (603)
T ss_pred cccceEEEEEecCCcccceeeeec---cc---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc-eeeeeeeeEE
Confidence 999999999999866433222222 22 489999999999999997 778999999999887332 2224899999
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 987 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 987 ~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
+++|||+.+++|+||.|..|.||+++.....-.++ .-|..+ |+ .+.|.. ...+++.+.|.+|++|++.
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH~~g-Vn--~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAHLGG-VN--SVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEEccChhhheEec------cccccC-ce--eEEEec--CceEEeccCcceeEEeccc
Confidence 99999999999999999999999998765553433 223333 66 889984 6899999999999999984
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=425.24 Aligned_cols=376 Identities=20% Similarity=0.355 Sum_probs=303.6
Q ss_pred CCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCC
Q 001318 328 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 407 (1101)
Q Consensus 328 ~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 407 (1101)
.+......++....-+|.+.|.|++|+|+|++ ||+|+.|.++++||+.|...+. +.++|.
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~KgH~ 157 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKGHK 157 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecCCc
Confidence 44555555666667789999999999999996 9999999999999999987776 489999
Q ss_pred CCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-----CCCeEEEEEecCCCcEEEEe
Q 001318 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 408 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-----d~~~~~l~s~~~d~~i~iwd 482 (1101)
..|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd 233 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWD 233 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEE
Confidence 9999999999999999999999999999999987754 5889999999999965 455 799999999999999
Q ss_pred CCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccC
Q 001318 483 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 562 (1101)
Q Consensus 483 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 562 (1101)
+..+.++..+.||+.+|+|++|- ++ .++++|+.|++|++|+...+.....+.+|...|+.++.+.|--
T Consensus 234 ~~~~~~~~~lsgHT~~VTCvrwG--G~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~--------- 301 (480)
T KOG0271|consen 234 TKLGTCVRTLSGHTASVTCVRWG--GE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV--------- 301 (480)
T ss_pred ccCceEEEEeccCccceEEEEEc--CC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh---------
Confidence 99999999999999999999983 33 4999999999999999999889999999999999998876532
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccc
Q 001318 563 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 642 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 642 (1101)
+..=+|.|.++..-+.+ +. ..+.+..+ ....-..+..|++|++|.++.+|+....++++.
T Consensus 302 -LRtgaf~~t~~~~~~~s--------e~-~~~Al~rY----------~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~ 361 (480)
T KOG0271|consen 302 -LRTGAFDHTGRKPKSFS--------EE-QKKALERY----------EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT 361 (480)
T ss_pred -hhccccccccccCCChH--------HH-HHHHHHHH----------HHhhccCcceeEEecCCceEEEecccccccchh
Confidence 11111111111100000 00 00000000 011111235556666666666665332211111
Q ss_pred ccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccC
Q 001318 643 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 722 (1101)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~ 722 (1101)
.
T Consensus 362 r------------------------------------------------------------------------------- 362 (480)
T KOG0271|consen 362 R------------------------------------------------------------------------------- 362 (480)
T ss_pred h-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCC
Q 001318 723 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 802 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~ 802 (1101)
. .
T Consensus 363 ----------------------------------------------------------------------------m--t 364 (480)
T KOG0271|consen 363 ----------------------------------------------------------------------------M--T 364 (480)
T ss_pred ----------------------------------------------------------------------------h--h
Confidence 1 1
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE
Q 001318 803 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 881 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 881 (1101)
+|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.+++|||+++.++
T Consensus 365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeee
Confidence 2778889999999999999999 99999999999999999999999999999999 999999999999999999999999
Q ss_pred eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 882 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 444 ~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 444 KQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=397.20 Aligned_cols=538 Identities=17% Similarity=0.223 Sum_probs=423.0
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
...+|...++-..|||.|-| +|+|...|.|||||....+.+...+|++ -.++|..++|++|+
T Consensus 54 iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~v-----------------~aG~I~Di~Wd~ds 115 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQV-----------------LAGPIKDISWDFDS 115 (603)
T ss_pred eeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeeee-----------------cccccccceeCCCC
Confidence 34569999999999999996 9999999999999998866666555553 35699999999999
Q ss_pred CeEEEEEcC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 420 SLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 420 ~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
++|++.+.. |.+.+||. |..+. ++.||...|++++|-|.... .++||++|++|.+|+=.--+...++..|
T Consensus 116 ~RI~avGEGrerfg~~F~~DS--G~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 116 KRIAAVGEGRERFGHVFLWDS--GNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH 189 (603)
T ss_pred cEEEEEecCccceeEEEEecC--CCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence 999987653 34556654 44444 68899999999999998776 8999999999999985555666788889
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec---CCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
...|+++.| ++||.++++++.||.|.+||-.+++....+. .|.+.|.+++|+||+
T Consensus 190 skFV~~VRy--sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-------------------- 247 (603)
T KOG0318|consen 190 SKFVNCVRY--SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-------------------- 247 (603)
T ss_pred ccceeeEEE--CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC--------------------
Confidence 999999998 4667899999999999999999998888776 566666666666665
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC-CCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 651 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 651 (1101)
..+++++.|.+++|||+.+.+++.++...... .....+-|. ...|++.+.+|+|.+++...+ ...+.+.+|...+
T Consensus 248 -~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK~I 323 (603)
T KOG0318|consen 248 -TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-SVLKVISGHNKSI 323 (603)
T ss_pred -ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-Chhheecccccce
Confidence 47999999999999999999999998754331 122344454 668999999999999999999 4889999998765
Q ss_pred cccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccc
Q 001318 652 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 731 (1101)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 731 (1101)
.. ...++++.++++++.||.|.-|+.........
T Consensus 324 Ta-----------------------------------------Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~----- 357 (603)
T KOG0318|consen 324 TA-----------------------------------------LTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL----- 357 (603)
T ss_pred eE-----------------------------------------EEEcCCCCEEEeeccCceEEEEecCCcccccc-----
Confidence 42 23456789999999999999999987544322
Q ss_pred cCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 732 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 732 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
....|...|.+++.+..+. +++++-|.++++.++......... .. .......++
T Consensus 358 -~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~-----------------~~-------~lg~QP~~l 411 (603)
T KOG0318|consen 358 -AGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE-----------------VV-------KLGSQPKGL 411 (603)
T ss_pred -ccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc-----------------ee-------ecCCCceeE
Confidence 2245999999999998777 788888889988776332211100 00 023445589
Q ss_pred EEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe--eeecCcc
Q 001318 812 ALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHS 889 (1101)
Q Consensus 812 ~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~--~~l~~h~ 889 (1101)
+..+++.+++.+.++.|.+..-. ..+.+.. ..-...+++++| ++..+|+|+.||.|+||.+..+++. ..+..|.
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~--~~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQ--TKVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecC--Ccceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 99999988888887666666522 2222332 345688999999 9999999999999999999876533 3567799
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcC
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT 968 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~ 968 (1101)
++|++++||||+.+||++...+.+.+||+.+.+.... .... |. ..|.+++|+|+.+++|+ +-|..|.||+++
T Consensus 488 a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~F---Ht---akI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 488 AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAF---HT---AKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc-eeee---ee---eeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 9999999999999999999999999999999765222 2222 22 37899999999999999 589999999998
Q ss_pred CceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 969 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 969 ~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
.....- ....+|...|+.+.|- |...|++.+.|..|++|++.
T Consensus 561 kP~~~i-~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 561 KPAKHI-IIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred Chhhhe-EeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 765542 2334788889999998 55668888899999999874
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-49 Score=418.57 Aligned_cols=610 Identities=14% Similarity=0.210 Sum_probs=447.8
Q ss_pred CCcEEEEEe-cCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 346 SSPMSMDFH-PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 346 ~~v~~~~~s-pdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
..+..+..+ ..|+++ +++.-..|.+||+.+|+..... ....-...|+|++-+||.-+||+
T Consensus 22 aN~~~~~~~~~~Gr~v--a~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAV 82 (888)
T KOG0306|consen 22 ANINFVVKRSGKGRAV--AVSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAV 82 (888)
T ss_pred cceeEEEeecCCCcEE--EEeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEE
Confidence 334444333 357753 3334478999999999544320 12233468999999999999999
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEee
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 504 (1101)
|..||.|+||+..++.... ++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..++||...|+..-|
T Consensus 83 GYaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F 157 (888)
T KOG0306|consen 83 GYADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALF 157 (888)
T ss_pred EecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhc
Confidence 9999999999999875433 6999999999999999999 7999999999999999999999999999999998877
Q ss_pred eecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCc
Q 001318 505 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 584 (1101)
Q Consensus 505 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 584 (1101)
.. +..++++.+.|+.|++||+.+..+..+...|...+..+++.+ +.+++++.|+.
T Consensus 158 ~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----------------------~~lvt~~~dse 212 (888)
T KOG0306|consen 158 LN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----------------------KLLVTAGTDSE 212 (888)
T ss_pred cC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-----------------------ceEEEEecCCc
Confidence 43 347999999999999999999888777777777676666654 36899999999
Q ss_pred EEEEECCCCc------------eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccc----cc
Q 001318 585 IKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN----LA 648 (1101)
Q Consensus 585 i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~ 648 (1101)
+++|++.... ...++...+ ......++..++++++++-+.|..+.++.+.+..+..+.+.. ..
T Consensus 213 ~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~K 291 (888)
T KOG0306|consen 213 LKVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAK 291 (888)
T ss_pred eEEEEeecccccccccccceeeccceeeecc-CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhh
Confidence 9999982210 111111111 123445667778899999999999999999876443332221 00
Q ss_pred ccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCc-cceeeccCCCcceeeeccccC-C-Cc
Q 001318 649 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV-KPRITEESNDKSKVWKLTELS-E-PN 725 (1101)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~~-~-~~ 725 (1101)
.... .......+ ......-...-......+.+... ++...... ..++. -.++++..|.++... . +.
T Consensus 292 kka~--t~e~~~~v---~~sl~~~i~r~~~ir~~~kiks~-----dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~ 360 (888)
T KOG0306|consen 292 KKAE--TEENEDDV---EKSLSDEIKRLETIRTSAKIKSF-----DVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPE 360 (888)
T ss_pred hhcc--ccccccch---hhhHHHHHHHHHheechhheeEE-----EEEecCCcceeEEE-eecCceEEEEeccCCCCCcc
Confidence 0000 00000000 00000000000000000000000 11111111 23333 556788888877621 1 11
Q ss_pred cccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCC
Q 001318 726 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 805 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~ 805 (1101)
....-.+...+|...|.+++|+.+...++ .+.++.+++|+. .+.+.++.. ..
T Consensus 361 ~~~~~~i~~~GHR~dVRsl~vS~d~~~~~-Sga~~SikiWn~----------------------~t~kciRTi-----~~ 412 (888)
T KOG0306|consen 361 ADRTSNIEIGGHRSDVRSLCVSSDSILLA-SGAGESIKIWNR----------------------DTLKCIRTI-----TC 412 (888)
T ss_pred ccccceeeeccchhheeEEEeecCceeee-ecCCCcEEEEEc----------------------cCcceeEEe-----cc
Confidence 11222222356999999999999987444 445567888875 344444332 23
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-----c
Q 001318 806 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----D 879 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-----~ 879 (1101)
..+.+..|-|.++++++|. .|.+.+||+.+...+.+.+.|.+.|..++.+| |++.+++|+.|.+|++||..- +
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCc
Confidence 4788899999999999999 79999999999999999999999999999999 999999999999999999853 1
Q ss_pred eEeeeec-------CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCc
Q 001318 880 EVKSKLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 952 (1101)
Q Consensus 880 ~~~~~l~-------~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 952 (1101)
...+.+. .-...|.|+.+||||++||.+=-|.+|+||-+++ ..+.-.+.||.. +|.++.+|||++
T Consensus 492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-----lKFflsLYGHkL---PV~smDIS~DSk 563 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-----LKFFLSLYGHKL---PVLSMDISPDSK 563 (888)
T ss_pred ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-----eeeeeeeccccc---ceeEEeccCCcC
Confidence 1111111 1346799999999999999999999999999998 334556677775 999999999999
Q ss_pred EEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCC
Q 001318 953 HFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS 1031 (1101)
Q Consensus 953 ~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1031 (1101)
.+++ +.|+.|++|-++-|.|-+.+. +|.+.|.++.|-|+..++++++.|+.|+-||-...+.+..+. +|+
T Consensus 564 livTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~ 634 (888)
T KOG0306|consen 564 LIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHH 634 (888)
T ss_pred eEEeccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cch
Confidence 9999 699999999999999999987 899999999999999999999999999999999999998887 555
Q ss_pred CCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1032 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1032 ~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
.. |+ +++-+| +|.+++++|.|.+|++|.-.+
T Consensus 635 ~e-v~--cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 635 SE-VW--CLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred he-ee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 55 88 788888 789999999999999999766
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-47 Score=403.57 Aligned_cols=546 Identities=15% Similarity=0.234 Sum_probs=422.0
Q ss_pred EEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcC
Q 001318 349 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 428 (1101)
Q Consensus 349 ~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 428 (1101)
-.+.|++||..++.. ..+.|-++|+..++... ..-.+...|.+++.||+|.+|++...+
T Consensus 18 Gnl~ft~dG~sviSP--vGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNSVISP--VGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCEEEec--cCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 457899999864443 34789999998765432 233567799999999999999999999
Q ss_pred CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc--------eEEEecCcccCeE
Q 001318 429 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--------KQYIFEGHEAPVY 500 (1101)
Q Consensus 429 ~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h~~~v~ 500 (1101)
|...+-++.....+.. + ....+|.++.|||||+ +++.|. .+.+.||...... ..+++.+|...|.
T Consensus 77 g~~~lvs~~~r~Vlh~---f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLHR---F-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeEE---E-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 9999988876543432 1 2357899999999999 455444 5689999865322 2457789999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCc--eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
++.|+ .|.++|++|+.|-++++|.++..+. ...+.+|...|...-|.. +...+++
T Consensus 150 si~Ws--~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~---------------------~~~~l~t 206 (893)
T KOG0291|consen 150 SIDWS--DDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA---------------------NSLDLYT 206 (893)
T ss_pred EEEec--cCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc---------------------CcceEEE
Confidence 99995 5558999999999999999987665 334455555555544444 4456999
Q ss_pred EeCCCcEEEEECCCC-----------------------ce-----eE----EEcCCCCCCCcCeEEEccCCCEEEEEeCC
Q 001318 579 AGDDFSIKFWDMDSV-----------------------QL-----LT----SIDADGGLPASPRIRFNKDGCLLAVSTND 626 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~-----------------------~~-----~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 626 (1101)
.+.||.+.+|..... +. .. ..-.......|++.+|++..+.|++|-..
T Consensus 207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss 286 (893)
T KOG0291|consen 207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS 286 (893)
T ss_pred EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence 999999999987611 10 00 00011122467888888888888888888
Q ss_pred CcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceee
Q 001318 627 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 706 (1101)
Q Consensus 627 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 706 (1101)
|...+|++..- .+++.+.
T Consensus 287 G~f~LyelP~f-~lih~LS------------------------------------------------------------- 304 (893)
T KOG0291|consen 287 GEFGLYELPDF-NLIHSLS------------------------------------------------------------- 304 (893)
T ss_pred CeeEEEecCCc-eEEEEee-------------------------------------------------------------
Confidence 88888877544 3332221
Q ss_pred ccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC-ceEEeeeccccccCCCCceeeeecCc
Q 001318 707 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQ 785 (1101)
Q Consensus 707 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~ 785 (1101)
....+|..++|+..|..|+.++.. |.+.||+++.+.+
T Consensus 305 -----------------------------is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY------------- 342 (893)
T KOG0291|consen 305 -----------------------------ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY------------- 342 (893)
T ss_pred -----------------------------cccceeeEEEecccCCEEEEcCCccceEEEEEeeccce-------------
Confidence 134678999999999999998886 9999999854322
Q ss_pred cccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEE
Q 001318 786 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 864 (1101)
Q Consensus 786 lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las 864 (1101)
.++..+|...+.+++++|||+++|+|+ ||+|+|||..++-|..+|..|...|+++.|+. .++.+++
T Consensus 343 ------------VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~lls 409 (893)
T KOG0291|consen 343 ------------VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLS 409 (893)
T ss_pred ------------eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEE
Confidence 133345999999999999999999999 89999999999999999999999999999999 9999999
Q ss_pred EeccCeEEEEEeecceEeeeecCcc-cCeeEEEEcCCCCEEEEEeCCC-ceEEEeCCCcccccceeeecCCCCCCCCCCC
Q 001318 865 GMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 942 (1101)
Q Consensus 865 g~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 942 (1101)
.+-||+|+.||+..++..+++.... -...+++..|.|..++.|+.|. .|.||++++|+ .+.++.||.. +|
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHEg---PV 481 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHEG---PV 481 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCCC---cc
Confidence 9999999999999999999987543 2356788888899999998886 49999999976 5788889885 99
Q ss_pred eEEEEcCCCcEEEE-EeCCeEEEEEcCCc-eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeec
Q 001318 943 TRVQFHQDQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 943 ~~~~~s~dg~~la~-~~d~~v~vwd~~~~-~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1020 (1101)
.+++|+|+|..|++ +-|++|++||+-.. ..+.++ .+...++.++|+|||+-|++++.||.|.+||+..+..+..+
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 99999999999999 68999999998654 233333 34678999999999999999999999999999988877554
Q ss_pred CCCcccCCC----------CCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC--ccccCC
Q 001318 1021 NPSAYLPAG----------VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1074 (1101)
Q Consensus 1021 ~~~~~~~~~----------~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~--~~~~~~ 1074 (1101)
.....+..| +....-....++|++ ||..+++|+..+.|+++++.++- .+|++.
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhheeeeEEec
Confidence 422222222 112223345899999 79999999999999999998886 444443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-51 Score=401.11 Aligned_cols=364 Identities=18% Similarity=0.240 Sum_probs=299.0
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 588999999999999999999999999999999999976444 7899999999999999999 79999999999999
Q ss_pred eCCCCceE-EEecCcccCeEEEeeee---cCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEe
Q 001318 482 DATNGAKQ-YIFEGHEAPVYSVCPHH---KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 482 d~~~~~~~-~~~~~h~~~v~~v~~~~---~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
|.++|+++ ..|.+|...|++++|.+ .+...+|++++.||.|+|||+..+.++..+.+|...|+++.|..+|
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g----- 259 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG----- 259 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-----
Confidence 99999876 68999999999999865 3456799999999999999999999999999999999999997766
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++++|+.|++|++|+...|.+...+++|.+ .|+.++.+-|- .| ++|
T Consensus 260 -----------------liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsTdy-~L--------------Rtg 305 (480)
T KOG0271|consen 260 -----------------LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALSTDY-VL--------------RTG 305 (480)
T ss_pred -----------------eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccchh-hh--------------hcc
Confidence 599999999999999999999999998877 78888876431 11 112
Q ss_pred cccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeee
Q 001318 638 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 717 (1101)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 717 (1101)
+|.+.+ ...+
T Consensus 306 -----------------------af~~t~--------------------------------------------~~~~--- 315 (480)
T KOG0271|consen 306 -----------------------AFDHTG--------------------------------------------RKPK--- 315 (480)
T ss_pred -----------------------cccccc--------------------------------------------ccCC---
Confidence 111111 0000
Q ss_pred ccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc
Q 001318 718 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 797 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 797 (1101)
. ..+++.. .+.+
T Consensus 316 --~---~se~~~~--------------------------------------------------------------Al~r- 327 (480)
T KOG0271|consen 316 --S---FSEEQKK--------------------------------------------------------------ALER- 327 (480)
T ss_pred --C---hHHHHHH--------------------------------------------------------------HHHH-
Confidence 0 0000000 0000
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC-CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 798 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 798 ~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
+..+.-..++.+++|+ |.++.+|+-.. .+++....+|..-|+.+.||| |++++|+++-|..|++||
T Consensus 328 -----------Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 328 -----------YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWD 395 (480)
T ss_pred -----------HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeee
Confidence 0001112346788888 68899998754 457778899999999999999 999999999999999999
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
..+|+.+..|+||-++|..++||.|.++|++++.|.++++|++++.+. .
T Consensus 396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-----~-------------------------- 444 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-----K-------------------------- 444 (480)
T ss_pred CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-----c--------------------------
Confidence 999999999999999999999999999999999999999999988321 0
Q ss_pred EEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEE
Q 001318 956 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 956 ~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
....+|.+.|+++.|+|||+.+++|+.|..+++|.
T Consensus 445 --------------------~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 445 --------------------QDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------------ccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 11237889999999999999999999999999985
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-48 Score=411.13 Aligned_cols=548 Identities=13% Similarity=0.198 Sum_probs=418.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
..+..|+|++-+|+.- +||+|..||.|+||+..++..+. .+.||...|+++.|...|..|
T Consensus 63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngHK~AVt~l~fd~~G~rl 122 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGHKAAVTTLKFDKIGTRL 122 (888)
T ss_pred cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eecccccceEEEEEcccCceE
Confidence 3456899999999987 59999999999999999886655 388999999999999999999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v 502 (1101)
|+||.|+.|.+||+-...-+ ..+.||.+.|+.+-|..+.+ ++++.+.|+.|++||+++..|..+...|.+.++++
T Consensus 123 aSGskDt~IIvwDlV~E~Gl---~rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 123 ASGSKDTDIIVWDLVGEEGL---FRLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL 197 (888)
T ss_pred eecCCCccEEEEEeccceee---EEeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence 99999999999999875433 36899999999999998777 89999999999999999999999999999999999
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
++.. +.+++++.|+.+++|++...... ......+++..-|. +.....+ ..--+...++++++++-+.|
T Consensus 198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~------~~~~~~~s~~~~G~-~~rqsk~-R~i~l~~d~s~r~~~c~g~d 265 (888)
T KOG0306|consen 198 VLDE----KLLVTAGTDSELKVWELAFEDDE------KETNRYISTKLRGT-FIRQSKG-REINLVTDFSDRFLVCQGAD 265 (888)
T ss_pred EEec----ceEEEEecCCceEEEEeeccccc------ccccccceeeccce-eeeccCC-ceeEEeecCcccEEEEecch
Confidence 9854 58999999999999998332111 01112222222232 1111222 23334556677788888999
Q ss_pred CcEEEEECCCCceeEEE--------------------------------cCCCCCCCcCeEEEccCCC---EEEEEeCCC
Q 001318 583 FSIKFWDMDSVQLLTSI--------------------------------DADGGLPASPRIRFNKDGC---LLAVSTNDN 627 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~--------------------------------~~~~~~~~v~~~~~s~~~~---~l~~~~~dg 627 (1101)
..+.++.+.+.+.+... ..-.....+.++.+.|+++ .|+. ..++
T Consensus 266 ~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nN 344 (888)
T KOG0306|consen 266 KVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANN 344 (888)
T ss_pred hhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecC
Confidence 99999998753211000 0001123456777777543 3333 6678
Q ss_pred cEEEEEecCcccc-c-------cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCcccccc
Q 001318 628 GIKILATSDGIRL-L-------RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA 699 (1101)
Q Consensus 628 ~i~iw~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1101)
++.+|.++..... . -.+.+|...+. ...++.
T Consensus 345 tv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR-----------------------------------------sl~vS~ 383 (888)
T KOG0306|consen 345 TVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR-----------------------------------------SLCVSS 383 (888)
T ss_pred ceEEEEeccCCCCCccccccceeeeccchhhee-----------------------------------------EEEeec
Confidence 8888887652111 0 11222222211 112223
Q ss_pred CccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCcee
Q 001318 700 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT 779 (1101)
Q Consensus 700 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 779 (1101)
+ ..++..+..+.+++|+..+.+..... ....+.+..|-|.+++++.|..+|.+.+||+...
T Consensus 384 d-~~~~~Sga~~SikiWn~~t~kciRTi---------~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~--------- 444 (888)
T KOG0306|consen 384 D-SILLASGAGESIKIWNRDTLKCIRTI---------TCGYILASKFVPGDRYIVLGTKNGELQVFDLASA--------- 444 (888)
T ss_pred C-ceeeeecCCCcEEEEEccCcceeEEe---------ccccEEEEEecCCCceEEEeccCCceEEEEeehh---------
Confidence 3 34444445589999998865433322 3357889999999999999999999999997422
Q ss_pred eeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC-----Cceee--------EecCC
Q 001318 780 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-----FKTMA--------TFMPP 845 (1101)
Q Consensus 780 ~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~-----~~~~~--------~~~~~ 845 (1101)
.++.. .. .|.+.|..++.+||++.+++|+ |.+|++||..- +...+ +++ -
T Consensus 445 -------------~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l 507 (888)
T KOG0306|consen 445 -------------SLVET-IR--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-L 507 (888)
T ss_pred -------------hhhhh-hh--ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-c
Confidence 11111 11 3999999999999999999999 99999999741 22211 222 3
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 925 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~ 925 (1101)
...|.|+.+|| |+++||++--|.+|+||-+.+-+..-.+.||.-||.||..|||++.++|||.|++|+||-++-|..
T Consensus 508 ~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC-- 584 (888)
T KOG0306|consen 508 EDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-- 584 (888)
T ss_pred cccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh--
Confidence 56799999999 999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred ceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC
Q 001318 926 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1004 (1101)
Q Consensus 926 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg 1004 (1101)
.+.+-+|. .+|.++.|-|....+.+ +.|+.|+-||..+.++++.+. +|...|+|++.+|+|.+++++|.|.
T Consensus 585 ---HKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~ 656 (888)
T KOG0306|consen 585 ---HKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDK 656 (888)
T ss_pred ---hhhhhccc---CceeEEEEcccceeEEEecCcceEEeechhhhhhheeec--cchheeeeeEEcCCCCeEEeccCCc
Confidence 34444554 48999999999888887 799999999999999999886 8999999999999999999999999
Q ss_pred eEEEEEcCCcee
Q 001318 1005 TVCVFSAANLKL 1016 (1101)
Q Consensus 1005 ~v~vwd~~~~~~ 1016 (1101)
+|++|.-....+
T Consensus 657 sIRlwE~tde~~ 668 (888)
T KOG0306|consen 657 SIRLWERTDEIL 668 (888)
T ss_pred eeEeeeccCcce
Confidence 999999765433
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=397.58 Aligned_cols=637 Identities=15% Similarity=0.167 Sum_probs=434.9
Q ss_pred EEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE--E
Q 001318 349 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA--Y 426 (1101)
Q Consensus 349 ~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~--~ 426 (1101)
..++-+|..-.+..-++ ..|.+||+...++-+ ++..|..+++|+|||++|+|+|+| +
T Consensus 41 ~gLa~~p~Sgl~aYpAG--CvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSGLCAYPAG--CVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred CcccccccccceeeccC--cEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccC
Confidence 44555665442222222 578899988765544 577888899999999999999997 4
Q ss_pred cCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC--CCcEEEEeCCCCceEEEecCcccCeEEEee
Q 001318 427 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504 (1101)
Q Consensus 427 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 504 (1101)
....++||++.....+. +|..|.-.|+|++|+|.++ ++++.+. |-.|.+||++.......-+ -...|..++|
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~f 173 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAF 173 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEE
Confidence 67789999999876555 6888999999999999999 6776664 5568889887654443322 4456888887
Q ss_pred eecCCccEEEEEecCCcEEEEecCCCCceee---ecCCCC--------------------ceeEEEEccCCce-------
Q 001318 505 HHKENIQFIFSTALDGKIKAWLYDNLGSRVD---YEAPGR--------------------WCTTMAYSADGTR------- 554 (1101)
Q Consensus 505 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~--------------------~v~~~~~s~~~~~------- 554 (1101)
+.+|.|+++.+. ..|++|.++....... +.+... .-.+.+++..|..
T Consensus 174 --sEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRR 250 (1080)
T KOG1408|consen 174 --SEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRR 250 (1080)
T ss_pred --ccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhh
Confidence 567789998874 8899999886552210 111000 0122333333321
Q ss_pred ---EEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcC----------------------CCCCCCcC
Q 001318 555 ---TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA----------------------DGGLPASP 609 (1101)
Q Consensus 555 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~~~v~ 609 (1101)
.+...+.....|++++. +++++|+.+|.|++|+..+-..+.+++. ........
T Consensus 251 LLDKWVqcRTTnAnCIcVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~I 328 (1080)
T KOG1408|consen 251 LLDKWVQCRTTNANCICVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAI 328 (1080)
T ss_pred hhhhhhhhhccccceeeeec--ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCcee
Confidence 01112233444555554 6899999999999999877655544431 11122345
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEecCcccccc--ccccccccccccCCCCCCcccccchhhhhhhcccccccccccccc
Q 001318 610 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR--TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS 687 (1101)
Q Consensus 610 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1101)
.+.|++....|.+...|..+++||+++-.+.-+ .+--|..-+.. +..+.
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~-----Ve~~p------------------------ 379 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWD-----VENLP------------------------ 379 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeee-----ecccc------------------------
Confidence 688999999999999999999999987633222 12222221111 10000
Q ss_pred cCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEe-ee
Q 001318 688 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL-WK 766 (1101)
Q Consensus 688 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i-w~ 766 (1101)
...........+.+ -+++++.|++||+|++.........+. . .++.+-..++ ..|+...+ .|
T Consensus 380 ~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrR----------N----ils~~l~ki~--y~d~~~q~~~d 442 (1080)
T KOG1408|consen 380 CNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRR----------N----ILSANLSKIP--YEDSTQQIMHD 442 (1080)
T ss_pred ccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeec----------c----cchhhhhcCc--cccCchhhhhh
Confidence 01112222233333 388999999999999986322221110 0 0111110011 11111110 00
Q ss_pred ccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC
Q 001318 767 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 845 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~ 845 (1101)
. ..-++|-.... . ......++++++||+|++||+|. .|+++||++.+.+....+..|
T Consensus 443 ~---------------~~~~fdka~~s-----~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 443 A---------------SAGIFDKALVS-----T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH 500 (1080)
T ss_pred c---------------cCCcccccchh-----h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence 0 00011111100 1 11466799999999999999999 799999999999988999999
Q ss_pred CCCeEEEEEecC--CCcEEEEEeccCeEEEEEeec-ceEeeeecCcccCeeEEEEcCCC--CEEEEEeCCCceEEEeCCC
Q 001318 846 PPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHAL--NVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 846 ~~~i~~l~~sp~--d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~dg--~~l~s~s~D~~v~iwd~~~ 920 (1101)
+.+|.|+.||-. ..++||+++.|+.|.|||+.. ..+++++.+|+..|++|.|.-.| ..++++|.|+.|.+ +...
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~q 579 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQ 579 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhc
Confidence 999999999853 357999999999999999964 57789999999999999998877 78999999997654 3332
Q ss_pred cccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccC-CCCCCCeeEEEEcCCCCEEE
Q 001318 921 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVY 998 (1101)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~ 998 (1101)
... ...+.....+......+..++..|..+++++ +.|+.|+|||+.++++.+.|.. ++|.+....+...|.|-||+
T Consensus 580 k~~--~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 580 KAS--SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA 657 (1080)
T ss_pred ccc--CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence 110 0111111112222356789999999999999 7999999999999999999985 35678899999999999999
Q ss_pred EEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC-----ccccC
Q 001318 999 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-----GKWGV 1073 (1101)
Q Consensus 999 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~-----~~~~~ 1073 (1101)
+...|.++.++|+.+|+++.++. ||... |. .+.|.+ |.+.|++.+.||+|+||.++... .....
T Consensus 658 tScsdktl~~~Df~sgEcvA~m~-------GHsE~-VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~~mii~m~~r~~~ 726 (1080)
T KOG1408|consen 658 TSCSDKTLCFVDFVSGECVAQMT-------GHSEA-VT--GVKFLN-DCKHLISVSGDGCIFVWKLPLTMIIRMVNRNGR 726 (1080)
T ss_pred EeecCCceEEEEeccchhhhhhc-------Ccchh-ee--eeeecc-cchhheeecCCceEEEEECchhHhHHHHHHhhH
Confidence 99999999999999999999887 54333 55 899999 67899999999999999997743 22233
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcc
Q 001318 1074 PPPVDNGSTSSMPATPPVGGSGSDQA 1099 (1101)
Q Consensus 1074 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1099 (1101)
.+...+++....|.+|..++.+++++
T Consensus 727 lr~rq~~~~~~~pl~p~~p~d~~~~~ 752 (1080)
T KOG1408|consen 727 LRVRQLEKFIAVPLEPDNPNDASCSA 752 (1080)
T ss_pred HHHHhccCCcCCCCCCCCCCCCcccc
Confidence 44556667777788888877777653
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=354.44 Aligned_cols=553 Identities=13% Similarity=0.147 Sum_probs=375.6
Q ss_pred cCCCCcEEEEEecCCCeEEEEEe--cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
.|...++|++|||+|+| +|+|. ....++||++.....+. -+..|.-.|+|++|+|.++
T Consensus 76 ssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVA-------------------EfvdHKY~vtcvaFsp~~k 135 (1080)
T KOG1408|consen 76 SSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVA-------------------EFVDHKYNVTCVAFSPGNK 135 (1080)
T ss_pred ccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchh-------------------hhhhccccceeeeecCCCc
Confidence 47889999999999997 99987 45679999998876655 3788999999999999999
Q ss_pred eEEEEEc--CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE-------
Q 001318 421 LFGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI------- 491 (1101)
Q Consensus 421 ~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~------- 491 (1101)
|+++.+. |..|.+||+..+.... -+.-...|..++|+.||. |++|.+ ...|++|.++.++....
T Consensus 136 yvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gR 208 (1080)
T KOG1408|consen 136 YVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGR 208 (1080)
T ss_pred EEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccch
Confidence 9998764 5678899987654332 223456899999999999 788877 46899999876652110
Q ss_pred ------e------------------------cCc-----------------ccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 492 ------F------------------------EGH-----------------EAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 492 ------~------------------------~~h-----------------~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
+ .|| +..-+|+|. +.++|+.|+.+|.|++
T Consensus 209 s~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g~vrl 284 (1080)
T KOG1408|consen 209 SYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKGMVRL 284 (1080)
T ss_pred hhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccceeee
Confidence 0 011 011233443 2268999999999999
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEecccc---CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK---RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID- 600 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~- 600 (1101)
|+..+..-..++......-..++--.+-..+..+... .....+.|++....+.+...|..+++||++.-..+....
T Consensus 285 Fnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s 364 (1080)
T KOG1408|consen 285 FNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS 364 (1080)
T ss_pred cCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceee
Confidence 9887755544443221110111100001111221111 123357789999999999999999999998744322111
Q ss_pred CCCCCCCcCeEEEcc-----------CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhh
Q 001318 601 ADGGLPASPRIRFNK-----------DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAA 669 (1101)
Q Consensus 601 ~~~~~~~v~~~~~s~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1101)
...|...|+++.--| -...+++++.|++|++|++..+ .--..+.......
T Consensus 365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~c-tnn~vyrRNils~------------------ 425 (1080)
T KOG1408|consen 365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFC-TNNQVYRRNILSA------------------ 425 (1080)
T ss_pred eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccc-cccceeecccchh------------------
Confidence 111122333333222 0234889999999999998763 1111110000000
Q ss_pred hhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee-eccccCCCccccccccCccccccceEEEEEcC
Q 001318 670 AAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW-KLTELSEPNQCRSLRLPENLRATKISRLIFTN 748 (1101)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 748 (1101)
+...++ ..|++..+. |........... ........+.+++++|
T Consensus 426 ------------------------------~l~ki~--y~d~~~q~~~d~~~~~fdka~~----s~~d~r~G~R~~~vSp 469 (1080)
T KOG1408|consen 426 ------------------------------NLSKIP--YEDSTQQIMHDASAGIFDKALV----STCDSRFGFRALAVSP 469 (1080)
T ss_pred ------------------------------hhhcCc--cccCchhhhhhccCCcccccch----hhcCcccceEEEEECC
Confidence 000000 000111000 000000000000 0012557899999999
Q ss_pred CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec---CCCEEEEEe-
Q 001318 749 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS- 824 (1101)
Q Consensus 749 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~---dg~~la~~s- 824 (1101)
+|++|+++..-|.++||++..-.. . .....|+..|.|+.||. ..++||+++
T Consensus 470 ~gqhLAsGDr~GnlrVy~Lq~l~~---------------------~----~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 470 DGQHLASGDRGGNLRVYDLQELEY---------------------T----CFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CcceecccCccCceEEEEehhhhh---------------------h----hheecccceeEEEeecCchhhhHhhhhccC
Confidence 999999999999999999843211 0 11123999999999985 357899999
Q ss_pred CCeEEEEECC-CCceeeEecCCCCCeEEEEEecCCC--cEEEEEeccCeEEEEEeecceEeeeecCc-----ccCeeEEE
Q 001318 825 GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-----SKRITGLA 896 (1101)
Q Consensus 825 dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~--~~lasg~~dg~v~vwd~~~~~~~~~l~~h-----~~~V~~l~ 896 (1101)
|.-|+|||+. +...++++.+|...|+++.|.. .| ..+++++.|..|.+--.+...-...+..| ...+..|+
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~ 603 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA 603 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence 8899999997 4567788999999999999988 44 67778888987765433321111122111 24588999
Q ss_pred EcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeee
Q 001318 897 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQ 975 (1101)
Q Consensus 897 ~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~ 975 (1101)
..|..+++++++.|+.|+||+++.+++ .+.+.+.....+....+...|.|.|+|+ +.|+++.+||.-+++|+.+
T Consensus 604 Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred eCCCcceEEEEecccceEEEeccccce-----eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 999999999999999999999999875 3334444444467889999999999999 6999999999999999998
Q ss_pred ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 976 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 976 ~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
.. ||+..|+.+.|++|.+.|++++.||.|.||.+...
T Consensus 679 m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 679 MT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hc--CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 77 99999999999999999999999999999998754
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=337.94 Aligned_cols=586 Identities=14% Similarity=0.155 Sum_probs=430.5
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCe
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 430 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 430 (1101)
..|..-|..++++.+.+....+||.+.-..+.. -..+...|+|++=..+--|.|.| ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCceEEEecC---cE
Confidence 667777777899999999999999987766652 34678899999865544444433 34
Q ss_pred EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ce----EEEecCcccCeEEEeee
Q 001318 431 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AK----QYIFEGHEAPVYSVCPH 505 (1101)
Q Consensus 431 i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~----~~~~~~h~~~v~~v~~~ 505 (1101)
|.+|.. |+.++. .+.+|...|.-+.- -|. .++++..++.+.||+..++ .. +..++...+.|++++ +
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666654 333433 45677777777664 466 6889999999999998874 22 122233333488775 4
Q ss_pred ecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcE
Q 001318 506 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 585 (1101)
Q Consensus 506 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 585 (1101)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-= ..++.|..+|+|
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL---------------------DVVaiG~~~G~V 226 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL---------------------DVVAIGLENGTV 226 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc---------------------eEEEEeccCceE
Confidence 55444578999999999999999999999999888878777665533 368889999999
Q ss_pred EEEECCCCceeEEEcCCCCCCCcCeEEEccCCCE-EEEEeCCCcEEEEEecCccccccccc-cccccccccCCCCCCccc
Q 001318 586 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFE-NLAYDASRTSENSKPTIS 663 (1101)
Q Consensus 586 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 663 (1101)
.+++++.++.+.+++... +.|++++|.-||+. +++|+..|.+-+||++.. +++...+ .|...
T Consensus 227 iifNlK~dkil~sFk~d~--g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~s------------- 290 (910)
T KOG1539|consen 227 IIFNLKFDKILMSFKQDW--GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGS------------- 290 (910)
T ss_pred EEEEcccCcEEEEEEccc--cceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCC-------------
Confidence 999999999999998653 36999999999875 556666799999999887 3333332 33222
Q ss_pred ccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEE
Q 001318 664 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 743 (1101)
.....+.+....+++++.|+.+++|-.+......+.-.. ..+|..+..+
T Consensus 291 ----------------------------v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~---R~GHs~Pp~~ 339 (910)
T KOG1539|consen 291 ----------------------------VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRS---RGGHSAPPSC 339 (910)
T ss_pred ----------------------------cccceecCCCceEeeccCCCceeEEEeeCCCCcchheee---ccCCCCCchh
Confidence 112344556788899999999999977754433222211 2579999999
Q ss_pred EEEc-CCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC----C
Q 001318 744 LIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND----S 818 (1101)
Q Consensus 744 l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg----~ 818 (1101)
+.|. .+|..+++++.|++.+.+++..+.++..-... ........+...-...-.-.+|..+++...- .
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~-------~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL-------HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc-------ccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 9998 78999999999999999887655432211110 0001100000000000012346666655321 1
Q ss_pred EEEEEe--CCeEEEEECCCCce-eeEec-----CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee---cC
Q 001318 819 YVMSAS--GGKISLFNMMTFKT-MATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL---KG 887 (1101)
Q Consensus 819 ~la~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l---~~ 887 (1101)
-++++. +...+.|+..+... ..++. .....+++++.++ .|++.+.|...|.|-+|++++|-....+ ..
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 244444 57799999987554 23333 2346799999999 9999999999999999999999988888 58
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEE
Q 001318 888 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 966 (1101)
Q Consensus 888 h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd 966 (1101)
|.++|++++...-++.+++++.||.+++||........ ...-+ ..+..+..+-....+|+ ..|-.|+++|
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~----~l~l~-----~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK----SLRLG-----SSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcceee----eeccC-----CCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 99999999998888999999999999999998854211 11112 36788888888888888 6888999999
Q ss_pred cCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 967 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 967 ~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
+.+.+.++.+. +|.+.|++++|||||++|++++.|++|++||+.++.++..+. .. .-++++.|+| .
T Consensus 563 ~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd-------~~~~sls~SP-n 628 (910)
T KOG1539|consen 563 VVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VD-------SPCTSLSFSP-N 628 (910)
T ss_pred chhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cC-------CcceeeEECC-C
Confidence 99999999987 899999999999999999999999999999999999997765 11 2245799999 7
Q ss_pred CCEEEEEecC-CcEEEEeccC
Q 001318 1047 PNEFALGLSD-GGVHVFEPLE 1066 (1101)
Q Consensus 1047 ~~~l~s~~~d-g~v~vW~~~~ 1066 (1101)
|++|+|...| ..|++|-=..
T Consensus 629 gD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCEEEEEEecCceEEEEEchh
Confidence 8999999999 6899997533
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=335.35 Aligned_cols=285 Identities=18% Similarity=0.272 Sum_probs=257.4
Q ss_pred cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC
Q 001318 450 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 529 (1101)
Q Consensus 450 ~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~ 529 (1101)
|-..+|..+.||.|++ .|+||+.+|.++||+..+...+.+|.||...|.++.|+|..++..++||+.||++++|++++
T Consensus 173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 4578999999999999 89999999999999999999999999999999999999886567899999999999999999
Q ss_pred CCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcC
Q 001318 530 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 609 (1101)
Q Consensus 530 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 609 (1101)
...+..+.+|...|..++|.|+| ++|++++.|.+-++||+.++..+....+|. ..|.
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG---------------------~~L~TasfD~tWRlWD~~tk~ElL~QEGHs--~~v~ 307 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSG---------------------KFLGTASFDSTWRLWDLETKSELLLQEGHS--KGVF 307 (459)
T ss_pred CcchhhhhcchhhheeeeecCCC---------------------ceeeecccccchhhcccccchhhHhhcccc--cccc
Confidence 88888888888766666655555 589999999999999999998887777654 4899
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccC
Q 001318 610 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 689 (1101)
Q Consensus 610 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1101)
+++|.+||.++++|+.|..-+|||+++| .++..+.
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L~-------------------------------------------- 342 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFLA-------------------------------------------- 342 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccC-cEEEEec--------------------------------------------
Confidence 9999999999999999999999999988 2222111
Q ss_pred CCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccc
Q 001318 690 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 769 (1101)
Q Consensus 690 ~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 769 (1101)
T Consensus 343 -------------------------------------------------------------------------------- 342 (459)
T KOG0272|consen 343 -------------------------------------------------------------------------------- 342 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCC
Q 001318 770 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA 848 (1101)
Q Consensus 770 ~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~ 848 (1101)
+|...|.+++|+|+|..+|+|+ |++++|||++....+.++.+|.+-
T Consensus 343 ---------------------------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 343 ---------------------------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred ---------------------------------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 1677788888888888999988 899999999988889999999999
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
|+.|.|+|..|.+|++++.|++++||...++.+++.+.||.+.|.++..++|+.+++|++.|+++++|.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999998899999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=331.28 Aligned_cols=284 Identities=19% Similarity=0.311 Sum_probs=257.1
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC--C
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--G 419 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 419 (1101)
++...+|..+.||+|++ +||||+-+|.++||+..+...+. ++.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 45678999999999999 59999999999999999987666 48999999999999995 7
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
..||+|+.||+|++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||++++..+...+||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876665 6899999999999999999 89999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.+++|+ +||.+++||+.|..-++||++++.++..+.+|...|.++.|+|+|- .+++|
T Consensus 307 ~~iaf~--~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lATg 363 (459)
T KOG0272|consen 307 FSIAFQ--PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLATG 363 (459)
T ss_pred ceeEec--CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEeec
Confidence 999985 5668999999999999999999999999999998888887777774 79999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCC
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 658 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1101)
+.|++++|||++..+.+.++..|.. -|..|.|+| .|.+|++++.|+++++|...+. .+++.+.|
T Consensus 364 s~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaG------------ 428 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAG------------ 428 (459)
T ss_pred CCCCcEEEeeecccccceecccccc--hhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcC------------
Confidence 9999999999999999999987755 699999999 8999999999999999998777 55555533
Q ss_pred CCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccc
Q 001318 659 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
|.
T Consensus 429 ------------------------------------------------------------------------------He 430 (459)
T KOG0272|consen 429 ------------------------------------------------------------------------------HE 430 (459)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 77
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeee
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
+.|.++.+++|+..+++++-|.++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeecc
Confidence 8889999999999999999999999984
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=306.04 Aligned_cols=290 Identities=19% Similarity=0.299 Sum_probs=257.4
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+-+|..+|.++.|++|+++ ++++|.||.+.|||..|..+.+. +.-....|..+||+|.|+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPSGN 110 (343)
T ss_pred ecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCCCC
Confidence 4469999999999999996 99999999999999998877764 344577999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCc---eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc
Q 001318 421 LFGVAYSRHIVQIYSYHGGD---EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 497 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~---~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 497 (1101)
++|+|+-|....||++.+.+ ..+...++.+|.+.+.|+.|.+|+. |+|++.|.++.+||+++|+.+..|.||.+
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCCcc
Confidence 99999999999999998652 2344456899999999999999776 89999999999999999999999999999
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
.|.++.+.|+ +++.+++|+-|+..++||++.+...+.|.+|...|.++.|.|+|. -|+
T Consensus 188 DV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~---------------------afa 245 (343)
T KOG0286|consen 188 DVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD---------------------AFA 245 (343)
T ss_pred cEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC---------------------eee
Confidence 9999998764 678999999999999999999999999999998888777777664 699
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCC
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 657 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1101)
+|++|++.++||++..+.+..+.......+|++++||..|++|++|..|.++.+||.-.+ +....+
T Consensus 246 tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L------------- 311 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL------------- 311 (343)
T ss_pred ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe-------------
Confidence 999999999999999999999987777778999999999999999999999999998666 222222
Q ss_pred CCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccc
Q 001318 658 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 737 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 737 (1101)
.+|
T Consensus 312 -----------------------------------------------------------------------------~GH 314 (343)
T KOG0286|consen 312 -----------------------------------------------------------------------------AGH 314 (343)
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 238
Q ss_pred ccceEEEEEcCCCceEEeeecCceEEeee
Q 001318 738 ATKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
.++|+++..+|||..+++++-|..++||.
T Consensus 315 eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 315 ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 89999999999999999999999999994
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=324.34 Aligned_cols=588 Identities=15% Similarity=0.177 Sum_probs=399.9
Q ss_pred ceeecccCCCCcEEEEEecCCC---eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEE
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 413 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~---~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 413 (1101)
....+-+|...|+|+.|-|+.+ + +++|+.|+.|++|.+......... .+.+|... |+
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~g~~~~--~~ 105 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TIQGHCKE--CV 105 (764)
T ss_pred eEEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------eecCccee--EE
Confidence 3444456999999999999887 5 899999999999999844333211 24555544 44
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCCceeeeeee--eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC--ceE
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE--IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--AKQ 489 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~--l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~ 489 (1101)
+++.......+.+.|+++.+||.+..+ +..... +..-.---.|+++.++.+..+++.|+.+..|.++.-.++ +.+
T Consensus 106 cv~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v 184 (764)
T KOG1063|consen 106 CVVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARV 184 (764)
T ss_pred EEEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEE
Confidence 454444444444789999999995544 111111 221222345677778666557778888888888876544 345
Q ss_pred EEecCcccCeEEEeeeecCC-ccEEEEEecCCcEEEEecCCCCceeee------cC-CCCceeEE----EEccCCceEEe
Q 001318 490 YIFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVDY------EA-PGRWCTTM----AYSADGTRTYQ 557 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~------~~-~~~~v~~~----~~s~~~~~~~~ 557 (1101)
..+.||.+.|.+++|..... .-+|+|+|.|..||+|.+.-....... .. ....+..+ .+.-.-..++.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 68899999999999875544 468899999999999987543311100 00 00111110 00000012233
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeE--EEcCC-CCCCCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLT--SIDAD-GGLPASPRIRFNKDGCLLAVSTNDNGIKIL 632 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 632 (1101)
||.+ -+..+.|+|.+..|++++.|.++.+|...+.. -+. .+... +.........|+|+++.+++-+..|..++|
T Consensus 265 GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 265 GHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred Cccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 4444 67778888888889999999999999877652 222 22211 122347789999999999999999999999
Q ss_pred EecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCc
Q 001318 633 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 712 (1101)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 712 (1101)
...+..
T Consensus 344 kt~d~~-------------------------------------------------------------------------- 349 (764)
T KOG1063|consen 344 KTKDKT-------------------------------------------------------------------------- 349 (764)
T ss_pred eccCcc--------------------------------------------------------------------------
Confidence 732220
Q ss_pred ceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCc
Q 001318 713 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 792 (1101)
Q Consensus 713 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g 792 (1101)
.|... .-..+|...|+.++|+|.|.+|++.+.|.+-|+|--...+. -|.
T Consensus 350 --~w~~~------------~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~-------------~wH---- 398 (764)
T KOG1063|consen 350 --FWTQE------------PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ-------------EWH---- 398 (764)
T ss_pred --ceeec------------cccccccccceeeeecCCCCEEEEeccccceeeeccccccc-------------cee----
Confidence 01100 00045889999999999999999999999999875421000 011
Q ss_pred cccccccCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEECC-------------------------------------
Q 001318 793 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMM------------------------------------- 834 (1101)
Q Consensus 793 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sd-g~i~vwd~~------------------------------------- 834 (1101)
.+ -..+.|...++|++|-+....+++|.| ..+|+|+..
T Consensus 399 -Ei---aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 399 -EI---ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred -ee---cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 00 111237888888888876556666664 557888731
Q ss_pred ------CCc---------------------------------eeeEecCCCCCeEEEEEecCCCcEEEEEecc-----Ce
Q 001318 835 ------TFK---------------------------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SS 870 (1101)
Q Consensus 835 ------~~~---------------------------------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~ 870 (1101)
+|. .++.+.||..+|.+++.+| +++++|+++.. ..
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAV 553 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceE
Confidence 000 0112346777899999999 99999999854 47
Q ss_pred EEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 871 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 871 v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
|++|+..+......+.+|+-.|+.++|||||++|++++.|+++.+|+........... .....|. .-|..+.|+|+
T Consensus 554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f-a~~k~Ht---RIIWdcsW~pd 629 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF-ACLKAHT---RIIWDCSWSPD 629 (764)
T ss_pred EEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh-ccccccc---eEEEEcccCcc
Confidence 9999999998889999999999999999999999999999999999986654433332 2223333 36788999999
Q ss_pred CcEEEE-EeCCeEEEEEcCCc--eeeeeccCCCCCCCeeEEEEcC-----CCCEEEEEEcCCeEEEEEcC-------Cce
Q 001318 951 QIHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAA-------NLK 1015 (1101)
Q Consensus 951 g~~la~-~~d~~v~vwd~~~~--~~~~~~~~~~h~~~i~~l~~sp-----dg~~l~s~s~dg~v~vwd~~-------~~~ 1015 (1101)
++++++ +.|++|++|..... +.+..+....++..|+.++|.| .+..+++|-..|.|.+|... .+.
T Consensus 630 e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~ 709 (764)
T KOG1063|consen 630 EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGT 709 (764)
T ss_pred cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccccccee
Confidence 999999 69999999999888 6666555556789999999977 23378899999999999965 121
Q ss_pred eeeecCCCcccCCCCCCCCccceEEEEeCCC-------C--CEEEEEecCCcEEEEecc
Q 001318 1016 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQE-------P--NEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d-------~--~~l~s~~~dg~v~vW~~~ 1065 (1101)
.....+....++ |... |. .+.|.|.. . ..|++|++|.+++++++.
T Consensus 710 ~~~~~~l~~~~~--~~~a-V~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 710 FNLDTRLCATIG--PDSA-VN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeccccccccC--hHHh-hh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 111111122222 2222 44 68888641 1 236999999999999874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=317.60 Aligned_cols=460 Identities=17% Similarity=0.259 Sum_probs=346.3
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.+.+.|.|+.|+|...+ +.++-..|.|.|||.++...+.. +.-..-+|++..|-+--+++
T Consensus 11 ~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred ccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceE
Confidence 48899999999999998 66677889999999999888764 33345689999999999999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ceEEEecCcccCeEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYS 501 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~ 501 (1101)
++|++|..|+||++.+++.+. .+.+|.+.|.+++.+|... +++|+|+|-+|++||.+.+ .+.++|.||...|.+
T Consensus 71 v~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred EEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence 999999999999999988766 6889999999999999999 8999999999999999865 677899999999999
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
++|.|..+ +.+++++.|++|++|.+....+..++.+|...|.++.+-+.|. ..++++|+.
T Consensus 146 v~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsgaD 205 (794)
T KOG0276|consen 146 VAFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGAD 205 (794)
T ss_pred EEecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecCC
Confidence 99988654 7899999999999999999999999999999999998877664 258999999
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 582 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
|.+|+|||..+..+++++.+|.+ .|..+.|+|.-..+++|+.||+++||+..+- ++...+.-
T Consensus 206 D~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~--------------- 267 (794)
T KOG0276|consen 206 DLTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY--------------- 267 (794)
T ss_pred CceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhhc---------------
Confidence 99999999999999999997765 6999999999999999999999999987654 22221110
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
.-.++
T Consensus 268 ---------------------------------------------------------------------------gleRv 272 (794)
T KOG0276|consen 268 ---------------------------------------------------------------------------GLERV 272 (794)
T ss_pred ---------------------------------------------------------------------------CCceE
Confidence 12455
Q ss_pred EEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEE
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 821 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la 821 (1101)
.+++..+.+..++.|..+|.+.+= + ......+.+++.|+.+-
T Consensus 273 W~I~~~k~~~~i~vG~Deg~i~v~-l-------------------------------------greeP~vsMd~~gKIiw 314 (794)
T KOG0276|consen 273 WCIAAHKGDGKIAVGFDEGSVTVK-L-------------------------------------GREEPAVSMDSNGKIIW 314 (794)
T ss_pred EEEeecCCCCeEEEeccCCcEEEE-c-------------------------------------cCCCCceeecCCccEEE
Confidence 566666666667777777766541 1 11122344445554443
Q ss_pred EEeC--CeEEEE------ECCCCceee----EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcc
Q 001318 822 SASG--GKISLF------NMMTFKTMA----TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 889 (1101)
Q Consensus 822 ~~sd--g~i~vw------d~~~~~~~~----~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~ 889 (1101)
+... -.+.+- ++..|+.+. .+-.-.-....++-+| +|++++++ .||.-.||..-..+ ..+.
T Consensus 315 a~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~R-----nK~f 387 (794)
T KOG0276|consen 315 AVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALALR-----NKAF 387 (794)
T ss_pred EcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeehh-----hccc
Confidence 3321 112222 222333221 1111112235678889 89888766 48888888643221 2244
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCC
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 969 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~ 969 (1101)
+.-....|++|....++--.++.|+++ +..+..+... .-....+--.|.+|.+..++.+++||..+
T Consensus 388 G~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~------------~~~~~e~i~gg~Llg~~ss~~~~fydW~~ 453 (794)
T KOG0276|consen 388 GSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIR------------PDMSAEGIFGGPLLGVRSSDFLCFYDWES 453 (794)
T ss_pred ccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccc------------cccceeeecCCceEEEEeCCeEEEEEccc
Confidence 566788999997788887778889988 4432211110 00112222346667778899999999999
Q ss_pred ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC
Q 001318 970 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1004 (1101)
Q Consensus 970 ~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg 1004 (1101)
++.++.+.. ....+.|+.+|.+++.++.|.
T Consensus 454 ~~lVrrI~v-----~~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 454 GELVRRIEV-----TSKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred ceEEEEEee-----ccceeEEecCCCEEEEEecCc
Confidence 999988753 457889999999998887664
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=319.11 Aligned_cols=547 Identities=13% Similarity=0.190 Sum_probs=407.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.+.+.|+|++=+-+-- .+++ ...|.+|-- ++.+.. ++..|...|.-+. +=|.+|
T Consensus 74 ~lp~~I~alas~~~~v---y~A~-g~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~--~fGe~l 127 (910)
T KOG1539|consen 74 PLPDKITALASDKDYV---YVAS-GNKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL--PFGEHL 127 (910)
T ss_pred CCCCceEEEEecCceE---EEec-CcEEEEEEc--cceEEE------------------EeccccceEEEEe--eecceE
Confidence 3778999988766543 2222 256666653 322221 3566776676655 448999
Q ss_pred EEEEcCCeEEEEEccCC-ceeee-eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE
Q 001318 423 GVAYSRHIVQIYSYHGG-DEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~-~~~~~-~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 500 (1101)
+++..++.+.||+..++ ..... ...++...+.|+++.- |..---.++.|+.+|.+.+|++++++.+++++++...|+
T Consensus 128 ia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT 206 (910)
T KOG1539|consen 128 IAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRIT 206 (910)
T ss_pred EEEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEeccccccee
Confidence 99999999999999884 22111 1112222233776654 332101488999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
++.- ++--+.++.|..+|+|.+++++..+.+..+....+.|++++|..||. ..+++|+
T Consensus 207 ~ieq--sPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~--------------------p~las~~ 264 (910)
T KOG1539|consen 207 AIEQ--SPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN--------------------PLLASGR 264 (910)
T ss_pred Eecc--CCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC--------------------eeEEecc
Confidence 9874 44446899999999999999999999999988888899999998887 4678888
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc---cccccccccccccccccCCC
Q 001318 581 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG---IRLLRTFENLAYDASRTSEN 657 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~ 657 (1101)
..|.+-+||++..+.+..+.. .+...+....|-|....+++.+.|+.+++|-..++ .+.++.-.||..+..
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~----- 338 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS----- 338 (910)
T ss_pred CCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch-----
Confidence 889999999999888777652 22446888999999999999999999999866543 244555566666533
Q ss_pred CCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccccc-----
Q 001318 658 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL----- 732 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~----- 732 (1101)
++..++ ..+..+.+++.|++.+.+++........+.....
T Consensus 339 ---~irfy~--------------------------------~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 339 ---CIRFYG--------------------------------SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred ---heeeec--------------------------------cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 222221 4567888999999999888764433222221000
Q ss_pred ------CccccccceEEEEEcCCC----ceEEeee-cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 733 ------PENLRATKISRLIFTNSG----NAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 733 ------~~~~~~~~i~~l~~s~~g----~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
...-.-.+|..+++.... ..++++. .+...+.|+++.... |+.....-..
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~-------------------G~~~L~~~~~ 444 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS-------------------GRHVLDPKRF 444 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc-------------------ccEEecCccc
Confidence 011133466777776532 1244444 457788888753211 1111000000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEe---cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
......+++++.++.|++.+.|+ .|.|-+|++++|-....+ ..|..+|+.++... -++.+++++.+|.+.+||..
T Consensus 445 ~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 445 KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred cccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecC
Confidence 11456789999999999999998 899999999999888888 57999999999998 78899999999999999999
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 956 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~- 956 (1101)
+..++..++- ...++++..+.....++.+..|-.|+++|+.+.+ ....+.||.. .|+.++|||||++|++
T Consensus 524 ~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR~f~gh~n---ritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 524 KKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVREFWGHGN---RITDMTFSPDGRWLISA 594 (910)
T ss_pred Ccceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhHHhhcccc---ceeeeEeCCCCcEEEEe
Confidence 9888877763 3457888888888899999999999999998843 4566777764 9999999999999999
Q ss_pred EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-CeEEEEEc
Q 001318 957 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSA 1011 (1101)
Q Consensus 957 ~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-g~v~vwd~ 1011 (1101)
+.|++|++||+.++.++..+.. ..+++++.|||+|.+||++..| .-|++|.=
T Consensus 595 smD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ecCCcEEEEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 6899999999999999988764 6799999999999999999998 56999963
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=308.61 Aligned_cols=354 Identities=19% Similarity=0.340 Sum_probs=279.1
Q ss_pred CCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCccee--EeeeeeeeecCCCCcccccccccCCCCCeE
Q 001318 334 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERL--VLRNFKVWDLGACSMPLQAALVKDPGVSVN 411 (1101)
Q Consensus 334 ~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 411 (1101)
.+....+.++|+.+|.+++|+|-..-++++|+.|-+.++|++...... ....+| .|....- .-..-+..|+
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-----h~~~~~~--~s~~~nkdVT 239 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-----HCIREGG--KSVPSNKDVT 239 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-----hhhhhhc--ccCCccCCcc
Confidence 356666778899999999999977767999999999999998751111 100000 0000000 0011235799
Q ss_pred EEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE
Q 001318 412 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 491 (1101)
Q Consensus 412 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 491 (1101)
+++|+.+|.+||+|+.||.++||+...+. +. +|..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+.
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEe
Confidence 99999999999999999999999988753 22 5888999999999999999 899999999999999999999888
Q ss_pred ecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcC
Q 001318 492 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 571 (1101)
Q Consensus 492 ~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 571 (1101)
+.-|..+-..+.|-. .
T Consensus 314 f~~~s~~~lDVdW~~-~--------------------------------------------------------------- 329 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQS-N--------------------------------------------------------------- 329 (524)
T ss_pred eeeccCCccceEEec-C---------------------------------------------------------------
Confidence 887776644444421 1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccc
Q 001318 572 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 651 (1101)
Q Consensus 572 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 651 (1101)
..|++.+.|+.|+++.+....++.++.+| ...|.++.|.|.|.+|+++++|++++||+.... .....+
T Consensus 330 --~~F~ts~td~~i~V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l------- 397 (524)
T KOG0273|consen 330 --DEFATSSTDGCIHVCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDL------- 397 (524)
T ss_pred --ceEeecCCCceEEEEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhh-------
Confidence 12666666777777777777788888865 447999999999999999999999999997655 222222
Q ss_pred cccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccc
Q 001318 652 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 731 (1101)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 731 (1101)
T Consensus 398 -------------------------------------------------------------------------------- 397 (524)
T KOG0273|consen 398 -------------------------------------------------------------------------------- 397 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 732 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 732 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
++|...|..+.|+|.|.. .|++
T Consensus 398 ---~~Hskei~t~~wsp~g~v---------------------------------~~n~---------------------- 419 (524)
T KOG0273|consen 398 ---QAHSKEIYTIKWSPTGPV---------------------------------TSNP---------------------- 419 (524)
T ss_pred ---hhhccceeeEeecCCCCc---------------------------------cCCC----------------------
Confidence 237778888899988750 0111
Q ss_pred EEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc
Q 001318 812 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 812 ~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
..+..+++++ |++|++||+..+.++.+|..|..+|.+++|+| +++++|+|+.||.|.+|+.+++++.+...+- +
T Consensus 420 ---~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~ 494 (524)
T KOG0273|consen 420 ---NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-G 494 (524)
T ss_pred ---cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-C
Confidence 1334566666 99999999999999999999999999999999 9999999999999999999999999888754 5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
.|..|+|+.+|..|..+-.|+.+++-|+.
T Consensus 495 ~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 495 GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 59999999999999999999999998874
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=304.09 Aligned_cols=531 Identities=19% Similarity=0.240 Sum_probs=379.3
Q ss_pred cccccCCcccccccccCCCCCCCcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCC--------cEEE
Q 001318 301 SDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--------DIGL 372 (1101)
Q Consensus 301 ~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg--------~i~i 372 (1101)
+.|+..+++...|.|+-..+ .....++|++.|.|++.+||.-. +++|...| .|+|
T Consensus 76 tgE~vyfvA~V~Vl~n~ee~----------------~Qr~y~GH~ddikc~~vHPdri~-vatGQ~ag~~g~~~~phvri 138 (626)
T KOG2106|consen 76 TGELVYFVAAVGVLYNWEER----------------SQRHYLGHNDDIKCMAVHPDRIR-VATGQGAGTSGRPLQPHVRI 138 (626)
T ss_pred CccEEEEeccEEEEEeehhh----------------hcccccCCCCceEEEeecCCcee-eccCcccccCCCcCCCeeee
Confidence 44444555555555555442 34456789999999999999874 88887666 4999
Q ss_pred EeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec--CCCeEEEE--EcCCeEEEEEccCCceeeeeeee
Q 001318 373 WEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHLEI 448 (1101)
Q Consensus 373 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~--~~d~~i~iwd~~~~~~~~~~~~l 448 (1101)
||..+-..+. ++..-...|.|++||+ .|.+|+.. +.+..+.+||+..+..... .
T Consensus 139 Wdsv~L~TL~-------------------V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---v 196 (626)
T KOG2106|consen 139 WDSVTLSTLH-------------------VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---V 196 (626)
T ss_pred cccccceeee-------------------eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc---c
Confidence 9988877665 3556677999999999 45566554 4567799999998776653 3
Q ss_pred ccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE---ecCc-ccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---FEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 449 ~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~h-~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
......|..+.|.|.+.. ++++++ .+.+.+|+.+.+...++ |+.+ ...|.|++|.++. -+++|..+|.|.+
T Consensus 197 k~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng---dviTgDS~G~i~I 271 (626)
T KOG2106|consen 197 KTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG---DVITGDSGGNILI 271 (626)
T ss_pred eeccceEEEEEeccCCCc-EEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC---CEEeecCCceEEE
Confidence 345678999999999987 566766 57899999998876653 4333 3568899986544 3899999999999
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 604 (1101)
|+..+.........|.+.|.+++...+|. |++|+.|+.|..|| ..-+.+...+....
T Consensus 272 w~~~~~~~~k~~~aH~ggv~~L~~lr~Gt----------------------llSGgKDRki~~Wd-~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDGGVFSLCMLRDGT----------------------LLSGGKDRKIILWD-DNYRKLRETELPEQ 328 (626)
T ss_pred EeCCCceEEeEeeecCCceEEEEEecCcc----------------------EeecCccceEEecc-ccccccccccCchh
Confidence 99977666655558888888888888886 88899999999999 45555555555555
Q ss_pred CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccc
Q 001318 605 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 684 (1101)
Q Consensus 605 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1101)
.+.++.++=...+ |++|+..+.|..=.++++..+..
T Consensus 329 ~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v------------------------------------------ 364 (626)
T KOG2106|consen 329 FGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTV------------------------------------------ 364 (626)
T ss_pred cCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEE------------------------------------------
Confidence 5667666543333 77777666655444433311100
Q ss_pred ccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEe
Q 001318 685 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 764 (1101)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 764 (1101)
.+|......++..|+...+++++.|+.+++
T Consensus 365 --------------------------------------------------~gh~delwgla~hps~~q~~T~gqdk~v~l 394 (626)
T KOG2106|consen 365 --------------------------------------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRL 394 (626)
T ss_pred --------------------------------------------------EecccceeeEEcCCChhheeeccCcceEEE
Confidence 236667788999999999999999999999
Q ss_pred eeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEec
Q 001318 765 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 843 (1101)
Q Consensus 765 w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 843 (1101)
|+-.. -+|... ...++.++.|+|.| .+|.|. .|...+.|.++...+. +.
T Consensus 395 W~~~k---------------~~wt~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~ 444 (626)
T KOG2106|consen 395 WNDHK---------------LEWTKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IH 444 (626)
T ss_pred ccCCc---------------eeEEEE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EE
Confidence 97211 022211 46678999999999 899998 8999999999855544 43
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeee-cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCc
Q 001318 844 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 844 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~ 921 (1101)
....++++++|+| +|.+||+|+.|+.|+||-+... ...... +.|..+|+.+.||+|+++|.+-+.|-.|..|.....
T Consensus 445 ~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~ 523 (626)
T KOG2106|consen 445 TDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSEC 523 (626)
T ss_pred ecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccC
Confidence 3478899999999 9999999999999999998753 322222 334489999999999999999999999999933221
Q ss_pred ccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE
Q 001318 922 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1001 (1101)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s 1001 (1101)
. .. .++..+.|....-.| | .......|...|..++-+.+.++|++|.
T Consensus 524 ~--~~-------------ts~kDvkW~t~~c~l---------------G---F~v~g~s~~t~i~a~~rs~~~~~lA~gd 570 (626)
T KOG2106|consen 524 K--QI-------------TSVKDVKWATYTCTL---------------G---FEVFGGSDGTDINAVARSHCEKLLASGD 570 (626)
T ss_pred c--cc-------------ceecceeeeeeEEEE---------------E---EEEecccCCchHHHhhhhhhhhhhhccc
Confidence 1 00 012233332111100 0 0001135577888889999999999999
Q ss_pred cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1002 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1002 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
+.|+|++|...--+..+.+. .-.+|.+. +. .++|.-.| ..+++.+.|.+|..|++
T Consensus 571 d~g~v~lf~yPc~s~rA~~h----e~~ghs~~-vt--~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 571 DFGKVHLFSYPCSSPRAPSH----EYGGHSSH-VT--NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCceEEEEccccCCCcccce----eeccccce-eE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 99999999987655443222 22234344 55 89999866 55666669999999997
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=291.26 Aligned_cols=257 Identities=20% Similarity=0.294 Sum_probs=219.0
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+-+|++.|+.++..+.+..++++++.|.++.+|++.......-.. ...+.||...|..++.++||+
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~--------------~r~~~GHsH~v~dv~~s~dg~ 76 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVP--------------VRRLTGHSHFVSDVVLSSDGN 76 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCce--------------eeeeeccceEecceEEccCCc
Confidence 335999999999999988899999999999999997653332111 225889999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc--ccC
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH--EAP 498 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h--~~~ 498 (1101)
+.++++.|+++++||+.+++..+ .|.||...|.+++|++|++ .+++|+.|++|++|++.. .+..++..+ .+.
T Consensus 77 ~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREW 150 (315)
T ss_pred eEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecCCCcCc
Confidence 99999999999999999997655 5889999999999999999 599999999999999654 445555433 789
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|.|++|+|..+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||. ..++
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------lcas 209 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------LCAS 209 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------EEec
Confidence 9999999988778999999999999999999888888888888777777777765 6888
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccc
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 643 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 643 (1101)
|+.||.+.+||++.++.+..+.+ ...|.+++|+|+...|+.+.. ..|+|||++++ ..+..
T Consensus 210 Ggkdg~~~LwdL~~~k~lysl~a---~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~~ 269 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGKNLYSLEA---FDIVNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVEE 269 (315)
T ss_pred CCCCceEEEEEccCCceeEeccC---CCeEeeEEecCCceeEeeccC-CceEEEeccch-hhhhh
Confidence 99999999999999999888864 346999999999887777764 56999999887 44433
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=287.40 Aligned_cols=287 Identities=16% Similarity=0.282 Sum_probs=245.1
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
...+|+||.+.|.++.|++|.+ .+++++.||.+.|||.-+...++.+.-....|..++|+ |.|+++++|+.|+...
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr--~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~s--PSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR--RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYS--PSGNFVACGGLDNKCS 122 (343)
T ss_pred eEEEecccccceeeeEecCCcC--eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEEC--CCCCeEEecCcCceeE
Confidence 3357999999999999999999 79999999999999999999999888888899988985 4558999999999999
Q ss_pred EEecCCCC------ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 001318 524 AWLYDNLG------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT 597 (1101)
Q Consensus 524 ~wd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 597 (1101)
+|++.+.+ ....+.+|.+.+.++.|..|+. |++++.|.+..+||+++++.+.
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~----------------------ilT~SGD~TCalWDie~g~~~~ 180 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH----------------------ILTGSGDMTCALWDIETGQQTQ 180 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCCc----------------------eEecCCCceEEEEEcccceEEE
Confidence 99998652 2345677777777777777654 9999999999999999999999
Q ss_pred EEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccc
Q 001318 598 SIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 676 (1101)
Q Consensus 598 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1101)
.+.+|. ..|.+++++| +++.+++|+-|+..++||++.+ ...+.|.+
T Consensus 181 ~f~GH~--gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~g------------------------------ 227 (343)
T KOG0286|consen 181 VFHGHT--GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEG------------------------------ 227 (343)
T ss_pred EecCCc--ccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecc------------------------------
Confidence 998664 4799999999 9999999999999999999887 44433322
Q ss_pred ccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEee
Q 001318 677 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 756 (1101)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 756 (1101)
T Consensus 228 -------------------------------------------------------------------------------- 227 (343)
T KOG0286|consen 228 -------------------------------------------------------------------------------- 227 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC
Q 001318 757 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 835 (1101)
Q Consensus 757 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~ 835 (1101)
|+..|.+++|.|+|.-+++|+ |++.++||++.
T Consensus 228 -----------------------------------------------hesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 228 -----------------------------------------------HESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred -----------------------------------------------cccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 555666666666666777777 57777777777
Q ss_pred CceeeEecC--CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCce
Q 001318 836 FKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 913 (1101)
Q Consensus 836 ~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v 913 (1101)
.+.+..+.. ...+|++++||. .|++|.+|..|.++.|||.-.++.+..|.+|.++|.++..+|||.-|+||+.|.++
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence 666666653 245799999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe
Q 001318 914 CVWS 917 (1101)
Q Consensus 914 ~iwd 917 (1101)
+||.
T Consensus 340 riW~ 343 (343)
T KOG0286|consen 340 RIWA 343 (343)
T ss_pred eecC
Confidence 9994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=284.37 Aligned_cols=296 Identities=16% Similarity=0.235 Sum_probs=249.4
Q ss_pred cccccceEEEEEcCC-CceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE
Q 001318 735 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 813 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~ 813 (1101)
.+|.+.|+.++..+. ...+++++.|..+.+|++... |.+.|..++. +.+ |+..|..++.
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~ 71 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL 71 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence 459999999999887 456788888999999998543 2234443332 444 9999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecC--ccc
Q 001318 814 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG--HSK 890 (1101)
Q Consensus 814 s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~--h~~ 890 (1101)
++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|++.. .+..++.. |.+
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHRE 149 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecc-cEEEEEecCCCcC
Confidence 99999999999 99999999999999999999999999999999 999999999999999999874 44444433 378
Q ss_pred CeeEEEEcCC--CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEc
Q 001318 891 RITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 967 (1101)
Q Consensus 891 ~V~~l~~s~d--g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~ 967 (1101)
-|+++.|+|+ ..+|+++|.|++|++||+++-+ ....+.||. +.+..+++||||..+++ +.|+.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 8999999998 7899999999999999999843 345555665 48999999999999999 69999999999
Q ss_pred CCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCC
Q 001318 968 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1047 (1101)
Q Consensus 968 ~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~ 1047 (1101)
+.++.+..+ +|...|.+++|+|+.-.|+.+ .+..|+|||++++..+..+++....+ +...+.+..++++|++ ||
T Consensus 222 ~~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 222 NEGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred cCCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence 999997776 568899999999997666655 56679999999999998887554444 2234457788999999 89
Q ss_pred CEEEEEecCCcEEEEeccC
Q 001318 1048 NEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1048 ~~l~s~~~dg~v~vW~~~~ 1066 (1101)
..|.+|-.|+.|++|.+..
T Consensus 296 ~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cEEEeeecCCcEEEEEeec
Confidence 9999999999999999853
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=303.84 Aligned_cols=470 Identities=17% Similarity=0.221 Sum_probs=345.7
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
+..|...|.++.|+|...+++++-.+|.|.|||.++...++. +.-..-+|.+..|-+--+ .+++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks---feV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS---FEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee---eeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 556899999999999999999999999999999999887774 555678999999998777 799999999999999
Q ss_pred CCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 483 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 483 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
..+++.++.|.+|.+.|.+++.+|.. .+++++|.|-+|++||++.. .+.+++.+|.+.|..++|.|...
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-------- 153 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-------- 153 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence 99999999999999999999998765 79999999999999999875 56778999999999999999876
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc--CCCEEEEEeCCCcEEEEEecCccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
+.+++++-|++|++|.+....+..++.+|. ..|+|+.|-+ |..+|++|++|.+++|||..+. .
T Consensus 154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~ 218 (794)
T KOG0276|consen 154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGHE--KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S 218 (794)
T ss_pred ------------cceeeeeccccEEEEEcCCCCCceeeeccc--cCcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence 679999999999999999999999998664 4799999988 4579999999999999999887 7
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
++++++|
T Consensus 219 CV~TLeG------------------------------------------------------------------------- 225 (794)
T KOG0276|consen 219 CVQTLEG------------------------------------------------------------------------- 225 (794)
T ss_pred HHHHhhc-------------------------------------------------------------------------
Confidence 7777765
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
|...|..+.|+|.-..+++++.||+++||+-.+-. +... +
T Consensus 226 -----------------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~----------------------lE~t-L 265 (794)
T KOG0276|consen 226 -----------------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK----------------------LEKT-L 265 (794)
T ss_pred -----------------ccccceEEEecCCCcEEEEecCCccEEEecCccee----------------------hhhh-h
Confidence 55667788899999999999999999999753211 1000 1
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEE----EeccCeEEEEE
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI----GMDDSSIQIYN 875 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las----g~~dg~v~vwd 875 (1101)
.- .-..+.|++-.+.+..+++|.|....+..+-..++...+.. ...+.|+. .+.+..+ .+.++ +
T Consensus 266 n~--gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~----~gKIiwa~-~~ei~~~~~ks~~~~~-----e 333 (794)
T KOG0276|consen 266 NY--GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDS----NGKIIWAV-HSEIQAVNLKSVGAQK-----E 333 (794)
T ss_pred hc--CCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecC----CccEEEEc-CceeeeeeceeccCcc-----c
Confidence 11 35678999999999999999976555555544443333321 11222332 1111110 11111 2
Q ss_pred eecceEee----eecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 876 VRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 876 ~~~~~~~~----~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
+..|+.+. .+-.-.---..++-||+|++++.++ ||.-.||..-..+ ... .+.-....|++|.
T Consensus 334 v~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~R-------nK~------fG~~~eFvw~~ds 399 (794)
T KOG0276|consen 334 VTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALR-------NKA------FGSGLEFVWAADS 399 (794)
T ss_pred ccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehh-------hcc------cccceeEEEcCCC
Confidence 33333221 1100000112467789998887766 7888888643311 011 1345778999997
Q ss_pred cEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCC
Q 001318 952 IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1030 (1101)
Q Consensus 952 ~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
...++ -+++.|+++ ++.+..+.+.+..+. ..+ -.|.+|. ...++.+++||.++++++.++.
T Consensus 400 ne~avRes~~~vki~--knfke~ksi~~~~~~-----e~i-~gg~Llg-~~ss~~~~fydW~~~~lVrrI~--------- 461 (794)
T KOG0276|consen 400 NEFAVRESNGNVKIF--KNFKEHKSIRPDMSA-----EGI-FGGPLLG-VRSSDFLCFYDWESGELVRRIE--------- 461 (794)
T ss_pred CeEEEEecCCceEEE--ecceeccccccccce-----eee-cCCceEE-EEeCCeEEEEEcccceEEEEEe---------
Confidence 77777 678999998 777777777643321 111 1344444 4457789999999999999998
Q ss_pred CCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1031 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1031 ~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
+.+-.+.|+. +|.+++.++ |-+.++..+.
T Consensus 462 ----v~~k~v~w~d-~g~lVai~~-d~Sfyil~~n 490 (794)
T KOG0276|consen 462 ----VTSKHVYWSD-NGELVAIAG-DDSFYILKFN 490 (794)
T ss_pred ----eccceeEEec-CCCEEEEEe-cCceeEEEec
Confidence 3344688886 566666666 5556666653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=308.57 Aligned_cols=546 Identities=17% Similarity=0.242 Sum_probs=382.8
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC---eEEEEEc
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYS 427 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~~ 427 (1101)
..|.|.+ ++|.|. ...|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3445655 355554 4799999987763333 4899999999999999888 8999999
Q ss_pred CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEe-cCCCcEEEEeCCCCc--eEEEecCcccCeEEEe-
Q 001318 428 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGA--KQYIFEGHEAPVYSVC- 503 (1101)
Q Consensus 428 d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~- 503 (1101)
|+.|++|.++.. .+.....+.+|...+.|+. ..-. +.++ ..|+++.+||.+..+ +...+.-..+.+..+|
T Consensus 78 D~~v~lW~l~~~-~~~~i~~~~g~~~~~~cv~--a~~~---~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 78 DGRVILWKLRDE-YLIKIYTIQGHCKECVCVV--ARSS---VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred CCcEEEEEEeeh-heEEEEeecCcceeEEEEE--eeee---EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 999999999943 3455667888766665554 2222 3333 789999999986555 3333332333343344
Q ss_pred -eeecCCccEEEEEecCCcEEEEecCCC--CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 504 -PHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 504 -~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
+.+.++.-+++.|+.+..|.++.-... .....+.+|..+|.+++|...+. +.-+++++|
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------~~~~laS~S 213 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------DDLLLASSS 213 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------------CcEEEEecC
Confidence 333333334556666777777755432 33457889999999999977664 224688899
Q ss_pred CCCcEEEEECCCCc---------------------eeEEEc--------CCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001318 581 DDFSIKFWDMDSVQ---------------------LLTSID--------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~---------------------~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 631 (1101)
.|..||||.+.-+. ....+. ..+|...|+++.|+|.+..|++++.|.++.+
T Consensus 214 QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmii 293 (764)
T KOG1063|consen 214 QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMII 293 (764)
T ss_pred CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEE
Confidence 99999999874322 010111 1245668899999999988999999999999
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 711 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 711 (1101)
|...+..-....
T Consensus 294 W~pd~~tGiWv~-------------------------------------------------------------------- 305 (764)
T KOG1063|consen 294 WKPDENTGIWVD-------------------------------------------------------------------- 305 (764)
T ss_pred EecCCccceEEE--------------------------------------------------------------------
Confidence 976543100000
Q ss_pred cceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCC
Q 001318 712 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 791 (1101)
Q Consensus 712 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~ 791 (1101)
.+|+=.+ .+....-.+..|+|+++.+++-+..|..++|.... ...|....
T Consensus 306 ~vRlGe~----------------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~~ 355 (764)
T KOG1063|consen 306 VVRLGEV----------------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQEP 355 (764)
T ss_pred EEEeecc----------------cccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeecc
Confidence 0000000 01334566788999999999999999999997211 12233221
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC----CceeeEecCCCCCeEEEEEecCCCcEEEEEe
Q 001318 792 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGM 866 (1101)
Q Consensus 792 g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 866 (1101)
. + .+|...|+.++|+|.|++|++.+ |-+-|+|-.-. ...+..-+-|...++|++|-+ ....+++|.
T Consensus 356 ~------i--SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgA 426 (764)
T KOG1063|consen 356 V------I--SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGA 426 (764)
T ss_pred c------c--ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecc
Confidence 1 2 35999999999999999999999 99999987641 122233345777899999998 677888888
Q ss_pred ccCeEEEEEeec-------------------------------------------ce-----------------------
Q 001318 867 DDSSIQIYNVRV-------------------------------------------DE----------------------- 880 (1101)
Q Consensus 867 ~dg~v~vwd~~~-------------------------------------------~~----------------------- 880 (1101)
+...+|+|+... |.
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 889999997410 00
Q ss_pred ----------EeeeecCcccCeeEEEEcCCCCEEEEEeCCC-----ceEEEeCCCcccccceeeecCCCCCCCCCCCeEE
Q 001318 881 ----------VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 945 (1101)
Q Consensus 881 ----------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 945 (1101)
.+.++.||.-.|.+++.+|+|+++||++... .|++|+..+..+ .+.+.+|.- .|+.+
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~HsL---TVT~l 578 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHSL---TVTRL 578 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccce---EEEEE
Confidence 1234568889999999999999999998654 489999988654 234556654 89999
Q ss_pred EEcCCCcEEEE-EeCCeEEEEEcCCceeeee--ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc--eeeeec
Q 001318 946 QFHQDQIHFLV-VHETQLAIFETTKLECVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--KLRCRI 1020 (1101)
Q Consensus 946 ~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~--~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~--~~~~~~ 1020 (1101)
+|||||++|++ +.|+++.+|.......... -....|..-|.+..|+||+.+++|+|.|.+|+||..... +.+.++
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence 99999999999 8999999999854322111 114579999999999999999999999999999999888 444443
Q ss_pred CCCcccCCCCCCCCccceEEEEeCCCCC----EEEEEecCCcEEEEecc
Q 001318 1021 NPSAYLPAGVSSSNVHPLVIAAHPQEPN----EFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1021 ~~~~~~~~~~~~~~v~~~~i~~~~~d~~----~l~s~~~dg~v~vW~~~ 1065 (1101)
. .++. +..|. +++|.|-+.. .++.|-..|.|.+|+..
T Consensus 659 a---~~~~---~~aVT--Av~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 659 A---CLKF---SLAVT--AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred c---hhcc---CCcee--eEEeeccccccccceEEEEecccEEEEEecc
Confidence 2 1222 22255 6777765544 78999999999999976
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=290.81 Aligned_cols=339 Identities=17% Similarity=0.251 Sum_probs=282.4
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.|..|++.|.+++.+|+.+++|||+.|....||++.+|.... .+.+|.+.|+++.|+.||. +|+||+.+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 488999999999999999999999999999999999998544 6889999999999999999 89999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
+..++.....+......+.=++|++. +++|+.|+.||.+-+|.+.+......+.+|+.++++-.|.|+|+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-------- 203 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-------- 203 (399)
T ss_pred EcccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--------
Confidence 99999999888766667777899874 47999999999999999998877888888888888777777765
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
+++++..||+|++||..+++++..+....+ ....++.++..+..++.|+.++.+++-+..++ +.+
T Consensus 204 -------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv 268 (399)
T KOG0296|consen 204 -------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVV 268 (399)
T ss_pred -------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEE
Confidence 699999999999999999999999975553 45788999999999999999999988876666 221
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
....+. .+
T Consensus 269 ~~~n~~-~~----------------------------------------------------------------------- 276 (399)
T KOG0296|consen 269 NCNNGT-VP----------------------------------------------------------------------- 276 (399)
T ss_pred EecCCC-Cc-----------------------------------------------------------------------
Confidence 111100 00
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
.+. ..+..
T Consensus 277 ----~l~------~~~e~-------------------------------------------------------------- 284 (399)
T KOG0296|consen 277 ----ELK------PSQEE-------------------------------------------------------------- 284 (399)
T ss_pred ----ccc------ccchh--------------------------------------------------------------
Confidence 000 00000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
....|.++.++..-.+.|+|+ ||+|.|||+...+..+.+ .|...|+.+.|-+ ..+|++++.||.|+.||.++|.
T Consensus 285 --~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 285 --LDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred --hhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence 122344455555666788888 999999999886655554 4888899999987 5789999999999999999999
Q ss_pred EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 881 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
++.++.||...|.+++++|+.++++|+|.|++.+|+++.
T Consensus 360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999999999999874
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=310.78 Aligned_cols=492 Identities=17% Similarity=0.265 Sum_probs=345.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
....|..++|+|...+ +.++-..|.|.+||..-+..+.. +..|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 4567899999999997 78888899999999999888774 889999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~ 503 (1101)
+|++|-.|+||++++.+++- ++.||-+.|..+.|++.-. .++|+|+|.+|+||++.+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999877654 7999999999999999888 799999999999999999999999999999999999
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeecCC-CCceeE------EEEccCC--ceEEeccccCceeEEEEcCCCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTT------MAYSADG--TRTYQGFRKRSLGVVQFDTTKN 574 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~------~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~ 574 (1101)
|+|.. ..++|+|.|.+||+||+...+....-.+. ...... +--.+|. +.++.||. ..++-++|+|.-.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-RGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-RGVNWAAFHPTLP 219 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-cccceEEecCCcc
Confidence 98876 58999999999999999754333222110 000000 0000111 14455554 4788899999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccccccc
Q 001318 575 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 654 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 654 (1101)
.+++|++|+.|++|.+...+.-..=...+|...|.++-|+|...++++.+.|++|++||+... ..++.++.
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr-------- 290 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR-------- 290 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec--------
Confidence 999999999999999977664443334456678999999999999999999999999999765 33333321
Q ss_pred CCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCc
Q 001318 655 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 734 (1101)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 734 (1101)
T Consensus 291 -------------------------------------------------------------------------------- 290 (1202)
T KOG0292|consen 291 -------------------------------------------------------------------------------- 290 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
...+-..++.+|..+ |++++.|+-+.+|.+.. +.+ +.+++
T Consensus 291 --endRFW~laahP~lN-LfAAgHDsGm~VFkleR-----------------------------------Erp--a~~v~ 330 (1202)
T KOG0292|consen 291 --ENDRFWILAAHPELN-LFAAGHDSGMIVFKLER-----------------------------------ERP--AYAVN 330 (1202)
T ss_pred --cCCeEEEEEecCCcc-eeeeecCCceEEEEEcc-----------------------------------cCc--eEEEc
Confidence 234556778888888 55566666666776521 222 23333
Q ss_pred cCCCEEEEEeCCeEEEEECCCCcee--eEecCC---CCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeecceEeee---e
Q 001318 815 KNDSYVMSASGGKISLFNMMTFKTM--ATFMPP---PPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSK---L 885 (1101)
Q Consensus 815 ~dg~~la~~sdg~i~vwd~~~~~~~--~~~~~~---~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~~~~~---l 885 (1101)
+..|...-|..|+-+|+.+.+.. ..++.. ..+..++.|+|..+-.|++.. ..|..-++.+.+...... -
T Consensus 331 --~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~ 408 (1202)
T KOG0292|consen 331 --GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKD 408 (1202)
T ss_pred --CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchh
Confidence 33444445889999999875433 334433 357889999995555555433 334555555543211000 0
Q ss_pred cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEE
Q 001318 886 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 965 (1101)
Q Consensus 886 ~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vw 965 (1101)
.-......++-.+.+ ++.+---.+..+.+-++..... +.+... .....+.+..+|.+|.. ....|.+|
T Consensus 409 ~~k~tG~~a~fvarN-rfavl~k~~~~v~ik~l~N~vt---kkl~~~-------~~~~~IF~ag~g~lll~-~~~~v~lf 476 (1202)
T KOG0292|consen 409 VKKGTGEGALFVARN-RFAVLDKSNEQVVIKNLKNKVT---KKLLLP-------ESTDDIFYAGTGNLLLR-SPDSVTLF 476 (1202)
T ss_pred hhcCCCCceEEEEec-ceEEEEecCcceEEecccchhh---hcccCc-------ccccceeeccCccEEEE-cCCeEEEE
Confidence 001112233333222 2333222355566666655221 111111 13455666666765554 55679999
Q ss_pred EcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001318 966 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 966 d~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
|+...+.+..+. ...+.-+.||+|..+++.-+ -.+|.|.+.
T Consensus 477 dvQq~~~~~si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~k 517 (1202)
T KOG0292|consen 477 DVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLS-KHTITIADK 517 (1202)
T ss_pred EeecceEEEEEe----cCceeEEEEcCccchhhhcc-cceEEEEec
Confidence 999998888876 56899999999998876554 345666653
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=292.85 Aligned_cols=273 Identities=17% Similarity=0.280 Sum_probs=238.2
Q ss_pred eeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 338 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 338 ~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
..++.+|...|+.+-|+|+-. ++++++.|++|++||..+++... .+.||.+.|..++|+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a 160 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA 160 (406)
T ss_pred hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence 344667999999999999988 69999999999999999998865 4899999999999999
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 497 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 497 (1101)
.|++||+++.|-.+++||.++. .++...+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|.++++|.+|..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence 9999999999999999999873 333446789999999999999998 899999999999999999999999999999
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
.|..+.. ..||.++++++.|.+|++|-+.++++...+..|...|.+++|.|.....-.....+. ...+.++.
T Consensus 237 wvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~------~~~~~~l~ 308 (406)
T KOG0295|consen 237 WVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS------TNGGQVLG 308 (406)
T ss_pred hEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC------CCCccEEE
Confidence 9998885 678899999999999999999999999999999999999999887641100000000 01346899
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccc
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
+++.|++|++||+.++.++.++.+|.. .|..++|+|.|+||+++.+|+++++||+.+. ++.+.+.
T Consensus 309 s~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ 373 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLE 373 (406)
T ss_pred eecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccC
Confidence 999999999999999999999997765 8999999999999999999999999999988 5555443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=280.74 Aligned_cols=333 Identities=16% Similarity=0.201 Sum_probs=264.9
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.+.....|++.|.+++.+|+.+ ++|||+.|..-.||+..+++... .+.+|++.|+|+.||
T Consensus 56 S~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~-------------------eltgHKDSVt~~~Fs 115 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAG-------------------ELTGHKDSVTCCSFS 115 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCccee-------------------EecCCCCceEEEEEc
Confidence 3445567999999999999776 69999999999999999998665 389999999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
.||.+||||+.+|.|+||+..++..... +......|.-+.|+|-+. +|+.|+.||.+.+|.+.++...+.+.||.
T Consensus 116 hdgtlLATGdmsG~v~v~~~stg~~~~~---~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~ 190 (399)
T KOG0296|consen 116 HDGTLLATGDMSGKVLVFKVSTGGEQWK---LDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHN 190 (399)
T ss_pred cCceEEEecCCCccEEEEEcccCceEEE---eecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCC
Confidence 9999999999999999999999886653 445567888999999888 89999999999999999988889999999
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
.++++=.|. ++|+.++++..||+|++|+..++.+...+.... .....++.++..+..+
T Consensus 191 ~~ct~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--------------------~~~~~~~~~~~~~~~~ 248 (399)
T KOG0296|consen 191 SPCTCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--------------------GLELPCISLNLAGSTL 248 (399)
T ss_pred CCccccccc--CCCceEEEEecCceEEEEecCCCceeEEecccc--------------------cCcCCcccccccccee
Confidence 999999985 558999999999999999999987776654322 1234445555566678
Q ss_pred EEEeCCCcEEEEECCCCceeEEEcCC------CCC---CCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccc
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSIDAD------GGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 647 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 647 (1101)
+.|+.++.+++-+..+|+.+...... .+. ..|-++.++..-.+.|+|+-||+|.|||.... .+ |
T Consensus 249 ~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~~-R----- 321 (399)
T KOG0296|consen 249 TKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS-TL-R----- 321 (399)
T ss_pred EeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-hh-h-----
Confidence 88899999999988888877666521 011 11222333334445555555666666654322 00 0
Q ss_pred cccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccc
Q 001318 648 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 727 (1101)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 727 (1101)
T Consensus 322 -------------------------------------------------------------------------------- 321 (399)
T KOG0296|consen 322 -------------------------------------------------------------------------------- 321 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCC
Q 001318 728 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 807 (1101)
Q Consensus 728 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~ 807 (1101)
. . -.|...
T Consensus 322 --------------------------------------------------------------------~--~--c~he~~ 329 (399)
T KOG0296|consen 322 --------------------------------------------------------------------H--I--CEHEDG 329 (399)
T ss_pred --------------------------------------------------------------------e--e--ccCCCc
Confidence 0 0 016677
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 808 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
|..+.|-+ ..+|++++ +|.|+.||.++|+++.++.+|...|.+++++| +.+++++++.|++.+||+..
T Consensus 330 V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 330 VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 88888877 56777776 99999999999999999999999999999999 99999999999999999864
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=265.00 Aligned_cols=295 Identities=14% Similarity=0.265 Sum_probs=240.6
Q ss_pred EEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCc--eeeecCCCCcee
Q 001318 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCT 544 (1101)
Q Consensus 467 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~v~ 544 (1101)
.+|+|+|.|.+|++|...+|.|.+++....+.|+.+.+. +++..|++++. ..||+||+++... +.++.+|...|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiT--pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEIT--PDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEc--CCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 389999999999999999999999999778899999974 55567777764 7899999998654 556666666555
Q ss_pred EEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEe
Q 001318 545 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 624 (1101)
Q Consensus 545 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 624 (1101)
.+.|..+ |+++++|++||+++|||++...+.+.++.. .+|+++..+|+...|++|.
T Consensus 88 aVgF~~d---------------------grWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 88 AVGFQCD---------------------GRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGD 143 (311)
T ss_pred EEEEeec---------------------CeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeec
Confidence 5555544 468999999999999999997766666533 5799999999999999999
Q ss_pred CCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccce
Q 001318 625 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 704 (1101)
Q Consensus 625 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 704 (1101)
.+|.|++||+.+. .+...+
T Consensus 144 qsg~irvWDl~~~-~c~~~l------------------------------------------------------------ 162 (311)
T KOG0315|consen 144 QSGNIRVWDLGEN-SCTHEL------------------------------------------------------------ 162 (311)
T ss_pred CCCcEEEEEccCC-cccccc------------------------------------------------------------
Confidence 9999999999765 221111
Q ss_pred eeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecC
Q 001318 705 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 784 (1101)
Q Consensus 705 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 784 (1101)
+|+ ....|.++++.|||.+++++...|..++|++......
T Consensus 163 ---------------------------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~----------- 202 (311)
T KOG0315|consen 163 ---------------------------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA----------- 202 (311)
T ss_pred ---------------------------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------
Confidence 111 3467899999999999999999999999998542211
Q ss_pred ccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCC-ceeeEecCCCCCeEEEEEecCCCcEE
Q 001318 785 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNII 862 (1101)
Q Consensus 785 ~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~l 862 (1101)
+.......++ .|+..+..+.+|||+++||+++ |.+++||+.++. +.-..+++|...+..++||. |++||
T Consensus 203 ------s~l~P~~k~~--ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~Yl 273 (311)
T KOG0315|consen 203 ------SELEPVHKFQ--AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYL 273 (311)
T ss_pred ------ccceEhhhee--cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEE
Confidence 1111111122 3899999999999999999998 999999999987 55677899999999999999 99999
Q ss_pred EEEeccCeEEEEEeecceEeeeecCcccCeeEEEEc
Q 001318 863 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 863 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 898 (1101)
++|+.|+.+++||+..++.++...+|.....|++..
T Consensus 274 vTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999999999999988888764
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=319.41 Aligned_cols=275 Identities=18% Similarity=0.277 Sum_probs=231.6
Q ss_pred CCCCcceeeccc-CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEe---eeeee---------eecCCCCccc
Q 001318 332 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---RNFKV---------WDLGACSMPL 398 (1101)
Q Consensus 332 ~~~~~~~~~~~~-h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~---~~~~~---------~~~~~~~~~~ 398 (1101)
..++..+..++. -...++|+.||+|++ ++|.|-.|-.|++|.+...+.... ..+.- -++.......
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 334555566665 457899999999999 699999999999999985431110 00000 1112222233
Q ss_pred ccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 399 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 399 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
....+.||.++|+.+.|+||.++|++++.|++|++|.+.+..++. .+.||..+|+++.|+|-|- +++|+|.|++.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tA 517 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTA 517 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCcee
Confidence 344689999999999999999999999999999999999987665 5789999999999999998 89999999999
Q ss_pred EEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec
Q 001318 479 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 479 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
++|......+++.+.+|.+.|.|+.|+|+. .++++||.|.+||+||+.++..+..|.+|...|.+++|+|+|
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G------ 589 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG------ 589 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC------
Confidence 999999999999999999999999997655 799999999999999999999888888887777777666666
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.+|++|+.||.|.+||+.+++.+..+.+| ...|.++.|+.+|..||+|+.|++|++||+...
T Consensus 590 ---------------r~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 590 ---------------RYLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ---------------ceEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 48999999999999999999999999877 557999999999999999999999999998754
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=275.16 Aligned_cols=296 Identities=20% Similarity=0.327 Sum_probs=242.2
Q ss_pred cccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEE
Q 001318 400 AALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 400 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 479 (1101)
...+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... ....++++|++.|..+.|.+|+. .+++++.|++|+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVR 115 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEE
Confidence 34688999999999999999999999999999999976532 34446889999999999999999 799999999999
Q ss_pred EEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecc
Q 001318 480 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 559 (1101)
Q Consensus 480 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 559 (1101)
.||+++|++++.+++|...|++++.. .-+-.++.+++.||++++||++..+...++... .
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k-y------------------ 175 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK-Y------------------ 175 (338)
T ss_pred EEecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccccc-e------------------
Confidence 99999999999999999999998832 334467888999999999999987766655322 2
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
++..+.|..++..+++|+-|+.|++||++.+.....+.+|.. .|+.+..+++|.++.+.+.|.++++||++.-..
T Consensus 176 ---qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 176 ---QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred ---eEEEEEecccccceeeccccCceeeeccccCcceEEeecccC--ceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 344555555566799999999999999999999999987755 799999999999999999999999999853210
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
.. ..+.++.
T Consensus 251 ~~---------------------------------------------------------------------R~v~if~-- 259 (338)
T KOG0265|consen 251 SQ---------------------------------------------------------------------RCVKIFQ-- 259 (338)
T ss_pred CC---------------------------------------------------------------------ceEEEee--
Confidence 00 0011100
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
+..
T Consensus 260 -------------------------------------g~~---------------------------------------- 262 (338)
T KOG0265|consen 260 -------------------------------------GHI---------------------------------------- 262 (338)
T ss_pred -------------------------------------cch----------------------------------------
Confidence 000
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
.+.......++|+|+++.+..|+ |..+++||..+...+..+.||.+.|++++|+| ...+|.+++.|.+|++=.
T Consensus 263 --hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 263 --HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred --hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 00122234578899999999998 89999999999999999999999999999999 889999999999998743
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=286.99 Aligned_cols=301 Identities=22% Similarity=0.325 Sum_probs=266.2
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
-+.+|..+|+.+-|.|+-...++++.|++|++||..+++..+ .++||.+.|.+++|+..|+ ++++++.|-.+++|
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW 177 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence 377899999999999999999999999999999999998755 7999999999999999999 89999999999999
Q ss_pred eCCC-CceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccc
Q 001318 482 DATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 560 (1101)
Q Consensus 482 d~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 560 (1101)
|..+ -++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++-++.++.+|..+|..+..+.||.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt------- 248 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT------- 248 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-------
Confidence 9887 67888899999999999997765 7999999999999999999999999999999888888777775
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccc
Q 001318 561 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 561 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
.+++++.|.+|++|-+.++++...+..|.+ .|.+++|.|...+ ....
T Consensus 249 --------------i~As~s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~~i~--------------- 295 (406)
T KOG0295|consen 249 --------------IIASCSNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--PSIS--------------- 295 (406)
T ss_pred --------------EEEecCCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--cchh---------------
Confidence 789999999999999999988888887766 6788888775321 0000
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
T Consensus 296 -------------------------------------------------------------------------------- 295 (406)
T KOG0295|consen 296 -------------------------------------------------------------------------------- 295 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
-+++
T Consensus 296 --------------------------------~at~-------------------------------------------- 299 (406)
T KOG0295|consen 296 --------------------------------EATG-------------------------------------------- 299 (406)
T ss_pred --------------------------------hccC--------------------------------------------
Confidence 0000
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
... .++++.+++ |++|++||+.++.++.++.+|.+.|..++|+| +|+||+++.+|+++++||++++
T Consensus 300 ---~~~---------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 300 ---STN---------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred ---CCC---------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccc
Confidence 000 345778888 99999999999999999999999999999999 9999999999999999999999
Q ss_pred eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
++...+..|..-|+++.|..+-.+++||+-|.++++|.-
T Consensus 367 ~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999963
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=264.84 Aligned_cols=281 Identities=14% Similarity=0.278 Sum_probs=231.4
Q ss_pred cEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001318 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 590 (1101)
Q Consensus 511 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1101)
-+|++++.|.+||+|...++.+..++......|..+.+.|+++ .|++++ ...||+||+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~---------------------~LAaa~-~qhvRlyD~ 68 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKK---------------------DLAAAG-NQHVRLYDL 68 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcc---------------------hhhhcc-CCeeEEEEc
Confidence 5799999999999999999999988888888787777777765 455554 568999999
Q ss_pred CCCce--eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchh
Q 001318 591 DSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAA 668 (1101)
Q Consensus 591 ~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1101)
.++.+ +.++.++ ...|.++.|..+|+++++|++||+++|||++.. .+.+.++
T Consensus 69 ~S~np~Pv~t~e~h--~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~~----------------------- 122 (311)
T KOG0315|consen 69 NSNNPNPVATFEGH--TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNYQ----------------------- 122 (311)
T ss_pred cCCCCCceeEEecc--CCceEEEEEeecCeEEEecCCCceEEEEeccCc-ccchhcc-----------------------
Confidence 98765 6667655 446999999999999999999999999999874 3222221
Q ss_pred hhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcC
Q 001318 669 AAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN 748 (1101)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 748 (1101)
+..+|+++..+|
T Consensus 123 --------------------------------------------------------------------~~spVn~vvlhp 134 (311)
T KOG0315|consen 123 --------------------------------------------------------------------HNSPVNTVVLHP 134 (311)
T ss_pred --------------------------------------------------------------------CCCCcceEEecC
Confidence 557899999999
Q ss_pred CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001318 749 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK 827 (1101)
Q Consensus 749 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~ 827 (1101)
+...|+++..+|.|++||+..... +..+ .+. ....|.++.+.|||++++.+. .|.
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c------------------~~~l----iPe--~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSC------------------THEL----IPE--DDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCcc------------------cccc----CCC--CCcceeeEEEcCCCcEEEEecCCcc
Confidence 999999999999999999843211 1111 111 456799999999999999998 699
Q ss_pred EEEEECCCC------ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeeecCcccCeeEEEEcCC
Q 001318 828 ISLFNMMTF------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFSHA 900 (1101)
Q Consensus 828 i~vwd~~~~------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~s~d 900 (1101)
.++|++-+. +.+..++.|.+.+..+.+|| |+++||+++.|.+++||+.++. +.-..+++|..-++..+||.|
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d 269 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD 269 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccC
Confidence 999998653 34556888999999999999 9999999999999999999887 666788999999999999999
Q ss_pred CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCC
Q 001318 901 LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 937 (1101)
Q Consensus 901 g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 937 (1101)
|+||+||+.|+++++|++..++. .....+|..
T Consensus 270 g~YlvTassd~~~rlW~~~~~k~-----v~qy~gh~K 301 (311)
T KOG0315|consen 270 GEYLVTASSDHTARLWDLSAGKE-----VRQYQGHHK 301 (311)
T ss_pred ccEEEecCCCCceeecccccCce-----eeecCCccc
Confidence 99999999999999999998763 344455543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=294.22 Aligned_cols=546 Identities=15% Similarity=0.210 Sum_probs=363.5
Q ss_pred CCcccccccccCCCCCCCcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeee
Q 001318 306 LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRN 385 (1101)
Q Consensus 306 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~ 385 (1101)
.|.+.|.+.--..+ .+.+|.+. +..-+.+..+|.++|..++|+|++. |+++|+.|..|+||++.+.+++.
T Consensus 18 HP~rPwILtslHsG-----~IQlWDYR-M~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrclf--- 87 (1202)
T KOG0292|consen 18 HPKRPWILTSLHSG-----VIQLWDYR-MGTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRCLF--- 87 (1202)
T ss_pred CCCCCEEEEeecCc-----eeeeehhh-hhhHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEecccceehh---
Confidence 45556766555545 56666653 2233444556999999999999999 69999999999999999999887
Q ss_pred eeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCC
Q 001318 386 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK 465 (1101)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~ 465 (1101)
.+.||-+.|..+.|++.-.+++++|+|.+|+||++.+++++. .+.||...|.|..|.|...
T Consensus 88 ----------------tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia---vltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 88 ----------------TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA---VLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred ----------------hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE---EEecCceEEEeeccCCccc
Confidence 489999999999999999999999999999999999999887 7999999999999999888
Q ss_pred eEEEEEecCCCcEEEEeCCC--------C-------------------c--eEEEecCcccCeEEEeeeecCCccEEEEE
Q 001318 466 QLCVITCGDDKTIKVWDATN--------G-------------------A--KQYIFEGHEAPVYSVCPHHKENIQFIFST 516 (1101)
Q Consensus 466 ~~~l~s~~~d~~i~iwd~~~--------~-------------------~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~ 516 (1101)
+++|+|-|.+|+|||+.. + . ..+.+.||...|+-++|++.- .+++||
T Consensus 149 --lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl--pliVSG 224 (1202)
T KOG0292|consen 149 --LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL--PLIVSG 224 (1202)
T ss_pred --eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc--ceEEec
Confidence 799999999999999852 1 0 124678999999999998755 699999
Q ss_pred ecCCcEEEEecCCCCc--eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001318 517 ALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 594 (1101)
Q Consensus 517 ~~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 594 (1101)
+.|..|++|.+...+. .-+..+|.. .+.++-|+|..+.+++.|+|++|++||+...+
T Consensus 225 ~DDRqVKlWrmnetKaWEvDtcrgH~n---------------------nVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETKAWEVDTCRGHYN---------------------NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred CCcceeeEEEeccccceeehhhhcccC---------------------CcceEEecCccceeEecCCCccEEEEeccccc
Confidence 9999999998875332 223344444 44555566666789999999999999999999
Q ss_pred eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhc
Q 001318 595 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT 674 (1101)
Q Consensus 595 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1101)
.++++..... ....++-+|..+++++|.+ +-+.+|.++.. ++...+
T Consensus 284 ~v~tfrrend--RFW~laahP~lNLfAAgHD-sGm~VFkleRE-rpa~~v------------------------------ 329 (1202)
T KOG0292|consen 284 SVQTFRREND--RFWILAAHPELNLFAAGHD-SGMIVFKLERE-RPAYAV------------------------------ 329 (1202)
T ss_pred ceeeeeccCC--eEEEEEecCCcceeeeecC-CceEEEEEccc-CceEEE------------------------------
Confidence 9999975544 6788999999999888764 55566766533 111111
Q ss_pred ccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEE
Q 001318 675 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL 754 (1101)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 754 (1101)
.+..+...- |..|+.+|+.+.+.... ..+..+.. ...+..++.++|....++
T Consensus 330 -------------------------~~n~LfYvk-d~~i~~~d~~t~~d~~v-~~lr~~g~-~~~~~~smsYNpae~~vl 381 (1202)
T KOG0292|consen 330 -------------------------NGNGLFYVK-DRFIRSYDLRTQKDTAV-ASLRRPGT-LWQPPRSLSYNPAENAVL 381 (1202)
T ss_pred -------------------------cCCEEEEEc-cceEEeeecccccccee-EeccCCCc-ccCCcceeeeccccCeEE
Confidence 122222222 67888888887333222 22221111 236778999999877666
Q ss_pred eeec--CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEE
Q 001318 755 ALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 832 (1101)
Q Consensus 755 ~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd 832 (1101)
.+++ ++...++.+..... +.. .+... . ......++-+..++-.+..-++..+.+=+
T Consensus 382 ics~~~n~~y~L~~ipk~~~---~~~------------~~~~~---~----k~tG~~a~fvarNrfavl~k~~~~v~ik~ 439 (1202)
T KOG0292|consen 382 ICSNLDNGEYELVQIPKDSD---GVS------------DGKDV---K----KGTGEGALFVARNRFAVLDKSNEQVVIKN 439 (1202)
T ss_pred EEeccCCCeEEEEEecCccc---ccC------------Cchhh---h----cCCCCceEEEEecceEEEEecCcceEEec
Confidence 5543 46666665532210 000 00000 0 11222233232222111112244555555
Q ss_pred CCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCc
Q 001318 833 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 912 (1101)
Q Consensus 833 ~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~ 912 (1101)
+.+ +..+.+... ..+..+-+.. .|.+|+. ....|.+||++..+.+..+. ...|.-+.||+|+.+++--+. .+
T Consensus 440 l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~K-h~ 511 (1202)
T KOG0292|consen 440 LKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSK-HT 511 (1202)
T ss_pred ccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhccc-ce
Confidence 543 233333321 2344555555 6666654 35679999999888877775 467899999999998887764 46
Q ss_pred eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCc--eeeeeccCCCCCCCeeEEEE
Q 001318 913 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL--ECVKQWVPRESSAPITHATF 990 (1101)
Q Consensus 913 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~--~~~~~~~~~~h~~~i~~l~~ 990 (1101)
|.|.+.+-. .+...... -.|.+-+|..+|-++.+..+- |+ |-+.+| -.++++ ..+|+-.+.
T Consensus 512 i~i~~kkL~------l~~sihEt----iriksgawde~gVfiYtT~nH-ik-Yal~~GD~GIikTL-----d~~iyitkv 574 (1202)
T KOG0292|consen 512 ITIADKKLE------LLCSIHET----IRIKSGAWDEDGVFIYTTLNH-IK-YALENGDSGIIKTL-----DKPIYITKV 574 (1202)
T ss_pred EEEEecchh------heecchhe----eEeeeceeccCceEEEEehhh-hh-hhhccCCcceEEec-----ccceEEEEe
Confidence 888875431 11111111 256777888888777764321 11 111211 122332 223443443
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 991 SCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 991 spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
.|+.+++-..|+.+.+.+++.-+.
T Consensus 575 --~gn~V~cl~rd~~~~~~~IDptEy 598 (1202)
T KOG0292|consen 575 --KGNKVFCLNRDGEIECLTIDPTEY 598 (1202)
T ss_pred --eCCEEEEEecCCCeEEEeechHHH
Confidence 477888888888888888875443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=290.10 Aligned_cols=255 Identities=19% Similarity=0.303 Sum_probs=225.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
.+..|++++|+.+|. +||+|+.||.++||+...+ .+. .+..|.++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~-------------------tl~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIS-------------------TLGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhh-------------------hhhccCCceEEEEEcCCCCEEE
Confidence 347899999999999 5999999999999997654 333 4889999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~ 503 (1101)
+++.|+++.+||..+|.... .+.-|..+-..+.|-.+.. +++++.|+.|+|+.+....++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987655 3455788878899987775 89999999999999999999999999999999999
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcC-CCCEEEEEeCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT-TKNRFLAAGDD 582 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d 582 (1101)
|. +.|.+|++++.|+++++|..........+..|...|+.+.|+|.|. +..+| .+..+++++.|
T Consensus 367 ~n--~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~-------------v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 367 WN--PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP-------------VTSNPNMNLMLASASFD 431 (524)
T ss_pred EC--CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC-------------ccCCCcCCceEEEeecC
Confidence 84 5568999999999999999999899999999999999999999986 22333 34568889999
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccc
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 643 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 643 (1101)
++|++||+..+.++..+..|. .+|.+++|+|+|+++++|+.||.|.+|++.++ ++++.
T Consensus 432 stV~lwdv~~gv~i~~f~kH~--~pVysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s 489 (524)
T KOG0273|consen 432 STVKLWDVESGVPIHTLMKHQ--EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKS 489 (524)
T ss_pred CeEEEEEccCCceeEeeccCC--CceEEEEecCCCcEEEecCCCCeeEeccccch-heeEe
Confidence 999999999999999997554 47999999999999999999999999999888 44443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=277.73 Aligned_cols=245 Identities=18% Similarity=0.295 Sum_probs=216.9
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+.+|.+.|.|+++.|-+++ +++|+.|++|.|||+.+|+...+ +.||...|..+++|+--.
T Consensus 147 i~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~vavS~rHp 206 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVAVSKRHP 206 (460)
T ss_pred hhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeeeecccCc
Confidence 4469999999999999986 99999999999999999998774 899999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 500 (1101)
||++++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. +|+||+.|.+++|||+++...+.++.||..+|.
T Consensus 207 YlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 207 YLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVA 281 (460)
T ss_pred eEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCCCCcce
Confidence 99999999999999999998777 5789999999999999988 899999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
.+.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++. +|....|++++
T Consensus 282 ~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~l---------------------hP~e~~fASas 338 (460)
T KOG0285|consen 282 SVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCL---------------------HPKENLFASAS 338 (460)
T ss_pred eEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEec---------------------CCchhhhhccC
Confidence 99875433 57999999999999999998888777777665555554 45555688887
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 581 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.| .|+-|++..|..+..+.++.. -+++++...|+ ++++|+++|.+.+||.+++
T Consensus 339 ~d-nik~w~~p~g~f~~nlsgh~~--iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 339 PD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-cceeccCCccchhhccccccc--eeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 76 699999999999988776544 68888888776 7788999999999999988
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=267.94 Aligned_cols=254 Identities=18% Similarity=0.233 Sum_probs=216.6
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
....+.+|++.|..+.|+|+|.. +|+|+.|..|.+|++.....-. .++++|.++|..+.|.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~-~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSC-FASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGM 99 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCe-EeecCCcceEEEEeccccccce------------------eeeccccceeEeeeec
Confidence 34446789999999999999994 9999999999999976433211 1578999999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
+|+..|++++.|.+|+.||+++|++++ .+++|.+.|+.+.-+.-|.. ++.|++.|+++++||+++...++++. ..
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~k 174 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NK 174 (338)
T ss_pred cCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cc
Confidence 999999999999999999999999877 57889999999997666776 78999999999999999999998886 45
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
..+++++|. ..+..+++|+-|+.|++||++.......+.+|...|+.+..+++|. ++
T Consensus 175 yqltAv~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs---------------------~l 231 (338)
T KOG0265|consen 175 YQLTAVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS---------------------FL 231 (338)
T ss_pred eeEEEEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC---------------------cc
Confidence 678889984 4456899999999999999999888888888888888888777775 78
Q ss_pred EEEeCCCcEEEEECCCC----ceeEEEcCCCCCCC--cCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 577 LAAGDDFSIKFWDMDSV----QLLTSIDADGGLPA--SPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++-+.|.++++||++-. +++..+.++.+... ...++|+|+++.+.+|+.|..+++||....
T Consensus 232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 89999999999998753 45777776655333 457899999999999999999999997654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=273.19 Aligned_cols=436 Identities=18% Similarity=0.249 Sum_probs=322.8
Q ss_pred CCcceeeccc-CCCCcEEEEEecC--CCeEEEEE-ecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCC
Q 001318 334 LPKTVTRTLN-QGSSPMSMDFHPV--QQTLLLVG-TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 409 (1101)
Q Consensus 334 ~~~~~~~~~~-h~~~v~~~~~spd--g~~llatg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 409 (1101)
..-...+.++ ....|+|++||+- |.+|++.- +.+..+-|||+..+..... .+.-+..
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~ 202 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEV 202 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccce
Confidence 3444555565 6778999999983 55444433 3345688999987766542 3445678
Q ss_pred eEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeecccc-CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 410 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
|...+|.|.+.-|......+.+.+|+.+++...+....++++. ..|.|++|.++|. ++||..+|.|.||+..+.+.
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~ 279 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRI 279 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceE
Confidence 9999999976666666667899999999998887766676554 5799999999998 89999999999999888777
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceee--ecCCCCceeEEEEccC---------------
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYSAD--------------- 551 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~--------------- 551 (1101)
.+....|.+.|.++|.. .+| .|++|+.|..|..|| ..-+.+.. ++...+.+..++-...
T Consensus 280 ~k~~~aH~ggv~~L~~l--r~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt 355 (626)
T KOG2106|consen 280 SKQVHAHDGGVFSLCML--RDG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT 355 (626)
T ss_pred EeEeeecCCceEEEEEe--cCc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence 77767999999999975 444 577799999999999 33333322 2222334443332111
Q ss_pred ----CceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001318 552 ----GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 627 (1101)
Q Consensus 552 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 627 (1101)
-..+..+|.+ ..+.++.+|+.+.+++++.|+.+++|+ ..+++.+..... ++.|+.|+|.| .++.|+..|
T Consensus 356 ~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d---~~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 356 LENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED---PAECADFHPSG-VVAVGTATG 428 (626)
T ss_pred ecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC---ceeEeeccCcc-eEEEeeccc
Confidence 1133344544 778899999999999999999999999 555555554332 47889999999 999999999
Q ss_pred cEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeec
Q 001318 628 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 707 (1101)
Q Consensus 628 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 707 (1101)
...+.|.++. ..+...
T Consensus 429 ~w~V~d~e~~-~lv~~~--------------------------------------------------------------- 444 (626)
T KOG2106|consen 429 RWFVLDTETQ-DLVTIH--------------------------------------------------------------- 444 (626)
T ss_pred eEEEEecccc-eeEEEE---------------------------------------------------------------
Confidence 9999998764 222111
Q ss_pred cCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccc
Q 001318 708 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW 787 (1101)
Q Consensus 708 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw 787 (1101)
....+++.++|+|+|.+|+.++.|+.|+||.++..
T Consensus 445 ----------------------------~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~----------------- 479 (626)
T KOG2106|consen 445 ----------------------------TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN----------------- 479 (626)
T ss_pred ----------------------------ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC-----------------
Confidence 02468899999999999999999999999988532
Q ss_pred cCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeE-----------------e-cCCCCC
Q 001318 788 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT-----------------F-MPPPPA 848 (1101)
Q Consensus 788 ~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~-----------------~-~~~~~~ 848 (1101)
|+.....-.. +..+|+.+.||+|++++.+-+ |-.|..|.......+.. + -.+...
T Consensus 480 ----g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~ 553 (626)
T KOG2106|consen 480 ----GRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTD 553 (626)
T ss_pred ----CcEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCch
Confidence 2222211112 458899999999999999998 88899995432221111 1 123445
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeecc---eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
|.+++-+. +.+++|+|.+.|+|++|...-- .....+.+|++.|++++|..+...|++.+.|..|..|++
T Consensus 554 i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 554 INAVARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred HHHhhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 77777777 8899999999999999987533 234566889999999999998889998889999999986
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=309.35 Aligned_cols=274 Identities=15% Similarity=0.219 Sum_probs=235.0
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
....+++..|++|+.+++.+..|..|++|.+..... .. ++ +...+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl----------------------~~--lk---~~~~l-------- 421 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL----------------------KK--LK---DASDL-------- 421 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhh----------------------cc--cc---chhhh--------
Confidence 456789999999999999999999999998742111 00 00 01100
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEE
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 895 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 895 (1101)
..+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++-..+||..+|+.+
T Consensus 422 -~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 422 -SNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred -ccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 1111222 33366677777777788999999999999999 99999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeee
Q 001318 896 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 974 (1101)
Q Consensus 896 ~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~ 974 (1101)
.|+|-|-++||+|.|++.++|..+. ..++.++.||.. .|.++.|+|+..|+++ +.|.++++||+.+|..++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~-----~~PlRifaghls---DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDH-----NKPLRIFAGHLS---DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred EecCCceEEEecCCCceeeeeeccc-----CCchhhhccccc---ccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence 9999999999999999999999887 346778888875 8999999999999999 589999999999999999
Q ss_pred eccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001318 975 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 975 ~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
.|. ||.++|++++|||+|++|++|+.||.|.+||+.+|+++..+. +| .+.++ ++.|+. ||..||+|+
T Consensus 572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~H-t~ti~--SlsFS~-dg~vLasgg 638 (707)
T KOG0263|consen 572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GH-TGTIY--SLSFSR-DGNVLASGG 638 (707)
T ss_pred Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cc-cCcee--EEEEec-CCCEEEecC
Confidence 997 899999999999999999999999999999999999999888 55 44477 899999 799999999
Q ss_pred cCCcEEEEeccCCC
Q 001318 1055 SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1055 ~dg~v~vW~~~~~~ 1068 (1101)
.|++|++||+....
T Consensus 639 ~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 639 ADNSVRLWDLTKVI 652 (707)
T ss_pred CCCeEEEEEchhhc
Confidence 99999999997766
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=257.39 Aligned_cols=246 Identities=20% Similarity=0.343 Sum_probs=197.8
Q ss_pred ecccCCCCcEEEEEecC-CCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 340 RTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spd-g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
.+-+|++.|+.++|+|- |. +||+|+.|+.|+||+...+....- ...+-.+|+..|+.+||+|.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCC
Confidence 45569999999999998 77 799999999999999985322211 11134689999999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC---ceEEEecCc
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGH 495 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h 495 (1101)
|++||+||.|.++.||.-..++ +....+++||...|.|++|+++|. +|++|+.|++|.||.+..+ +++..++.|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred CcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 9999999999999999887654 556778999999999999999999 8999999999999998854 467789999
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC---CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
...|..+.|+|.. .+|++++.|.+|++|+-... .+..++.+|.. .+.+++|++.
T Consensus 150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~---------------------TVW~~~F~~~ 206 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN---------------------TVWSLAFDNI 206 (312)
T ss_pred cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccc---------------------eEEEEEecCC
Confidence 9999999999877 59999999999999976531 23444444444 4555566666
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
|..|++++.|++++||...+. +. ..+...+..++|. ...|++++.|+.|++|...
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred CceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 668999999999999986532 11 1223457778887 5579999999999999654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-29 Score=268.63 Aligned_cols=545 Identities=14% Similarity=0.158 Sum_probs=376.0
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCC-CCCeEEEEEecCCCeEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~la 423 (1101)
...|+|+|||.+.+. ||.+-.||.|.||++..+-... .++.++ ...|..++|+ +|..|.
T Consensus 25 Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RLF 84 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRLF 84 (691)
T ss_pred ccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeEE
Confidence 467999999999885 9999999999999998753322 234444 5689999999 677888
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE--EecCcccCeEE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYS 501 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~ 501 (1101)
+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+...+...++... .|...++.|.+
T Consensus 85 S~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred eecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 99999999999999987655 5667788999999999998 78999999988888888877654 45556788999
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC--------CCCceeEEEEccCCceEEeccccCceeEEEEcCCC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1101)
+.|+ +++..+++|+.||.|++||...+........ ....|.++.+-.++
T Consensus 160 lsw~--~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--------------------- 216 (691)
T KOG2048|consen 160 LSWN--PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--------------------- 216 (691)
T ss_pred EEec--CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC---------------------
Confidence 9985 5557899999999999999998766552111 11233444444333
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccc
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 653 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 653 (1101)
.+++|..-|+|.+||...+.+++.+..+.. .|.+++..+++.++++++.|+.|.-|...+....
T Consensus 217 -tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------- 280 (691)
T KOG2048|consen 217 -TIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------- 280 (691)
T ss_pred -cEEEecCCceEEEEcccCcchhhhhhhhhc--ceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------
Confidence 499999999999999999999999887654 6999999999999999999999988876655221
Q ss_pred cCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccC
Q 001318 654 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 733 (1101)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 733 (1101)
|-... .
T Consensus 281 --------------------------------------------------------------wv~~~------------~ 286 (691)
T KOG2048|consen 281 --------------------------------------------------------------WVINS------------R 286 (691)
T ss_pred --------------------------------------------------------------eeeec------------c
Confidence 00000 0
Q ss_pred ccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCee-EEE
Q 001318 734 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CFA 812 (1101)
Q Consensus 734 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~-~~~ 812 (1101)
...|...|.+++..++ .+++++.|..+.+-....... .+ ..+.. ...-. -+.
T Consensus 287 r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~---h~~~~--------~~p~~~~v~ 339 (691)
T KOG2048|consen 287 RDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD---HRQKN--------LFPASDRVS 339 (691)
T ss_pred ccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---hhccc--------cccccceee
Confidence 0237778888888877 688899998887754321000 00 00000 00011 133
Q ss_pred EecCCCEEEEEeCCeEEEEECCCCce---------eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe-
Q 001318 813 LSKNDSYVMSASGGKISLFNMMTFKT---------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK- 882 (1101)
Q Consensus 813 ~s~dg~~la~~sdg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~- 882 (1101)
..+..++++.-.+..+.+|.+.+... .+-.......|.+.+.|| +|++||.+.- ..++||.++....+
T Consensus 340 ~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk 417 (691)
T KOG2048|consen 340 VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVK 417 (691)
T ss_pred cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCccee
Confidence 34444444444578888888865411 122223455699999999 9999998864 46788888752222
Q ss_pred ----eeecCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-
Q 001318 883 ----SKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 956 (1101)
Q Consensus 883 ----~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~- 956 (1101)
.......-.+..+.|+-|+..++.++ .+..+.+.++++.........+.. .....|..++.|++|.++|+
T Consensus 418 ~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~ 493 (691)
T KOG2048|consen 418 VINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAI 493 (691)
T ss_pred EEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEE
Confidence 12222344578889999998888887 677888888877543322222111 22358999999999999999
Q ss_pred EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeeeecCC--CcccCCCCCCC
Q 001318 957 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINP--SAYLPAGVSSS 1033 (1101)
Q Consensus 957 ~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp-dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~ 1033 (1101)
+..+.|.+|++++++...... .-...|+.++|+| +-..|+.+..|+.|.-||++..++ .+... ...+|.....-
T Consensus 494 ~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l-~~ws~~nt~nlpk~~~~l 570 (691)
T KOG2048|consen 494 STRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNL-TRWSKNNTRNLPKEPKTL 570 (691)
T ss_pred eccceEEEEEcccceeecchh--ccCcceeeeeccccccCcEEEEecCCeEEEEecchhhh-hhhhhccccccccChhhc
Confidence 799999999999987654442 1247899999995 556788899999999999954432 11110 01112111111
Q ss_pred CccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1034 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1034 ~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
.-....+.|+|.+...++. -+.+-+.+.|.
T Consensus 571 ~~~~~gisfd~~n~s~~~~-~~a~w~~~id~ 600 (691)
T KOG2048|consen 571 IPGIPGISFDPKNSSRFIV-YDAHWSCLIDF 600 (691)
T ss_pred CCCCceEEeCCCCccEEEE-EcCcEEEEEec
Confidence 1112378888765444433 33455566554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-30 Score=271.71 Aligned_cols=504 Identities=13% Similarity=0.162 Sum_probs=348.5
Q ss_pred CCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccc-cCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
..+|+++|||.+.+.||.+-.||.|.||++..+=.... ++.++ ...|.+++|++.++ |.+.+.+|+|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 56899999999999999999999999999998643332 35554 45899999996665 88999999999999999
Q ss_pred CceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 486 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 486 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
++.+..+....+.|++++.++.. ..++.|+.||.+..++...+........ ....+.+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l-------------------~rq~sRvL 158 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSL-------------------MRQKSRVL 158 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeec-------------------ccccceEE
Confidence 99999999999999999987655 6899999999777776655433322111 11123566
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-----CCC-CCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
+++|+|++..+++|+.||.|++||...+..+.... ... ...-|.++.|-.+ ..|++|...|+|.+||...+ .
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g-T 236 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG-T 236 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc-c
Confidence 67777777789999999999999999998777322 111 2223455555544 46788888888888887776 3
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
+++.+.
T Consensus 237 LiqS~~-------------------------------------------------------------------------- 242 (691)
T KOG2048|consen 237 LIQSHS-------------------------------------------------------------------------- 242 (691)
T ss_pred hhhhhh--------------------------------------------------------------------------
Confidence 333221
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
.|...|.+++.++++.++++++-|+.+..|...+... -|-....
T Consensus 243 ----------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-------------~wv~~~~------- 286 (691)
T KOG2048|consen 243 ----------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-------------EWVINSR------- 286 (691)
T ss_pred ----------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-------------ceeeecc-------
Confidence 2677899999999999999999999888876533211 0211111
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeE-EEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
...|...+.++++.++ .+++|+ |..+.+-.....+...........-. -+...+ .++|..--.+..+.+|.+.
T Consensus 287 -r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlG 361 (691)
T KOG2048|consen 287 -RDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLG 361 (691)
T ss_pred -ccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceecc
Confidence 1238889999999888 677777 88877766544221111110001111 122333 3344444456677888776
Q ss_pred cce---------Eeee-ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEE
Q 001318 878 VDE---------VKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 947 (1101)
Q Consensus 878 ~~~---------~~~~-l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 947 (1101)
+.. +++- ++.+ ..|.+.+.||||++|+.+.- ..++||.++............... ..-....+.|
T Consensus 362 S~~~~g~~~~~~Llkl~~k~~-~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~---~~~~a~~i~f 436 (691)
T KOG2048|consen 362 SVILQGEYNYIHLLKLFTKEK-ENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPL---ALLDASAISF 436 (691)
T ss_pred CcccccccChhhheeeecCCc-cceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchh---hhccceeeEE
Confidence 541 1111 2333 45899999999999998764 348888887643222222211111 1125678899
Q ss_pred cCCCcEEEE-E-eCCeEEEEEcCCceee--eeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCC
Q 001318 948 HQDQIHFLV-V-HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1023 (1101)
Q Consensus 948 s~dg~~la~-~-~d~~v~vwd~~~~~~~--~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1023 (1101)
+-|+..++. + ....+.++++.+.... ..+...+-...|..+..||||++||+.+.+|.|.+|++++++.......
T Consensus 437 tid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r- 515 (691)
T KOG2048|consen 437 TIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR- 515 (691)
T ss_pred EecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhc-
Confidence 998887777 4 6778888888765433 3333333467899999999999999999999999999999987654420
Q ss_pred cccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1024 AYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1024 ~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
++ ....+.+|+|.+-+.|+....|+.++-+|++..+
T Consensus 516 --ln-------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 516 --LN-------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred --cC-------cceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 11 2233788887777889999999999999995444
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=283.85 Aligned_cols=284 Identities=20% Similarity=0.329 Sum_probs=243.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
-+..|..+.|.|+|+. |++|+..|.+.+|+..+ .+|+ .++..|..+|+++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCCCEEE
Confidence 4578999999999997 99999999999999743 2221 25889999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v 502 (1101)
+|+.+|.|++|+..-.. ++ .+.+ |...|++++|+|++. .+++|++|++|+|||....+.-..+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999987543 22 2444 448999999999888 79999999999999999999888999999999999
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
.|++.. .++++++.|..|++||.+++.++.++..|...|..+.|++++ ++|+++|.|
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~---------------------N~Llt~skD 285 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG---------------------NWLLTGSKD 285 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC---------------------CeeEEccCC
Confidence 999876 589999999999999999999999988888877777666655 689999999
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
..++++|+++.+.+.++++|.. .|+++.|+| ...+|.+|+.||.|..|.+... +.+..
T Consensus 286 ~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~~------------------ 344 (464)
T KOG0284|consen 286 QSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLGE------------------ 344 (464)
T ss_pred ceEEEEehhHhHHHHHhhcchh--hheeeccccccccceeeccCCCceEEEecccc-ccccC------------------
Confidence 9999999999999999987655 799999999 7789999999999999987522 11100
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
...+|...|
T Consensus 345 -----------------------------------------------------------------------i~~AHd~~i 353 (464)
T KOG0284|consen 345 -----------------------------------------------------------------------IPPAHDGEI 353 (464)
T ss_pred -----------------------------------------------------------------------CCcccccce
Confidence 013488899
Q ss_pred EEEEEcCCCceEEeeecCceEEeeecc
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQ 768 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~ 768 (1101)
.+++|+|=|..|++++.|.++++|.-.
T Consensus 354 wsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 354 WSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeeeccccceeEeecCCCcceeeeccC
Confidence 999999999999999999999999754
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=266.89 Aligned_cols=293 Identities=16% Similarity=0.317 Sum_probs=244.1
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
++.+|.+.|.|+++.|..+++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 689999999999999999999999999999999999998554 7899999999999999888 89999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
|++..+.++.+.||-..|.++..+|.- +.|++|+.|.++++||+++...+..+.+|...|.++.+.|-.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d--------- 289 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD--------- 289 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC---------
Confidence 999999999999999999999998766 589999999999999999999999999998888877765533
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
..+++|+.|++|++||+..|+...++..|.. .|.+++.+|....+++++.| .|+-|++..+ ..+
T Consensus 290 ------------pqvit~S~D~tvrlWDl~agkt~~tlt~hkk--svral~lhP~e~~fASas~d-nik~w~~p~g-~f~ 353 (460)
T KOG0285|consen 290 ------------PQVITGSHDSTVRLWDLRAGKTMITLTHHKK--SVRALCLHPKENLFASASPD-NIKQWKLPEG-EFL 353 (460)
T ss_pred ------------CceEEecCCceEEEeeeccCceeEeeecccc--eeeEEecCCchhhhhccCCc-cceeccCCcc-chh
Confidence 3599999999999999999999988886654 79999999999999999876 6788888776 332
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..+
T Consensus 354 ~nl----------------------------------------------------------------------------- 356 (460)
T KOG0285|consen 354 QNL----------------------------------------------------------------------------- 356 (460)
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 222
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
.+|...|.+++.+.||- +++++.+|.+..||+..+-.-..++... ..|.
T Consensus 357 -------------sgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~~t~v---------qpGS-------- 405 (460)
T KOG0285|consen 357 -------------SGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRGQTIV---------QPGS-------- 405 (460)
T ss_pred -------------ccccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccccccc---------cCCc--------
Confidence 22667778888877774 7888888999999985432111110000 0111
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECC
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM 834 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~ 834 (1101)
...+..|.+.+|...|..|++|. |.+|++|.-.
T Consensus 406 l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 11466799999999999999998 9999999754
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=251.31 Aligned_cols=293 Identities=16% Similarity=0.202 Sum_probs=235.9
Q ss_pred cccccceEEEEEcCC-CceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE
Q 001318 735 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 813 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~ 813 (1101)
.+|.+++..++|+|- |..|++++.|..|++|+..... +-.+.. ....+|...|++++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-------------------s~~ck~--vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-------------------SWTCKT--VLDDGHKRSVRSVAW 69 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-------------------cEEEEE--eccccchheeeeeee
Confidence 358889999999998 8899999999999999874210 000111 112359999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEECC--CCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec---ceEeeeecC
Q 001318 814 SKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKG 887 (1101)
Q Consensus 814 s~dg~~la~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~ 887 (1101)
+|.|++||+++ |.++.||.-. +.+++.+++||+.+|.+++|++ +|++||++++|..|-||.+.. .++...++.
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999865 4578899999999999999999 999999999999999999874 468899999
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEE
Q 001318 888 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 966 (1101)
Q Consensus 888 h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd 966 (1101)
|...|..+.|+|...+|+|+|.|.+|++|+-..+ ....+.+.+.+|.. .|.+++|++.|..|++ +.|++++||-
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence 9999999999999999999999999999987742 23567788888874 8999999999999888 5889999998
Q ss_pred cCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 967 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 967 ~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
.-+. + ...|+..++.+.|. ...|++++.|+.|++|....+-.--.++.......-|.. .|. ++.|.|..
T Consensus 224 ~~~~-----~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVN--sV~w~p~~ 292 (312)
T KOG0645|consen 224 LYTD-----L-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVN--SVQWNPKV 292 (312)
T ss_pred eccC-----c-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc-ccc--eEEEcCCC
Confidence 6521 1 23578999999998 567999999999999987643111111111111112223 466 99999965
Q ss_pred CCEEEEEecCCcEEEEecc
Q 001318 1047 PNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~ 1065 (1101)
+++|++|++||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999875
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=282.07 Aligned_cols=290 Identities=19% Similarity=0.307 Sum_probs=248.0
Q ss_pred cccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccC-CceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEE
Q 001318 402 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 479 (1101)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.||..+|.+++|+++|. .++|+|.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 5889999999999999 999999999999999999987 55555 7999999999999999999 699999999999
Q ss_pred EEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecc
Q 001318 480 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 559 (1101)
Q Consensus 480 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 559 (1101)
+||+++|+++..|. ....++++.|++++ .+.+++|+.|+.|+.||+++++.+.++..|-+.+..+.|-++|+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~------ 355 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR------ 355 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc------
Confidence 99999999999986 45567889998766 37899999999999999999999999988888888888877775
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
++++.++|++++||+.+....+..+... ......++..+|+++++++-+.|+.|.++.+....+
T Consensus 356 ---------------rFissSDdks~riWe~~~~v~ik~i~~~-~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 356 ---------------RFISSSDDKSVRIWENRIPVPIKNIADP-EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred ---------------eEeeeccCccEEEEEcCCCccchhhcch-hhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 6999999999999999988776555322 223577899999999999999999999998643311
Q ss_pred c--ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeee
Q 001318 640 L--LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 717 (1101)
Q Consensus 640 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 717 (1101)
. .+.+++|
T Consensus 420 ~nkkK~feGh---------------------------------------------------------------------- 429 (503)
T KOG0282|consen 420 LNKKKRFEGH---------------------------------------------------------------------- 429 (503)
T ss_pred cCHhhhhcce----------------------------------------------------------------------
Confidence 1 0111110
Q ss_pred ccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc
Q 001318 718 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 797 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 797 (1101)
T Consensus 430 -------------------------------------------------------------------------------- 429 (503)
T KOG0282|consen 430 -------------------------------------------------------------------------------- 429 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 798 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 798 ~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
.-.+--..+.|||||.+|++|+ ||.+.+||.++-+.+..++.|...+..+.|+|.....+|+++.||.|++||
T Consensus 430 -----~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 430 -----SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -----eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 0123345688999999999998 999999999999999999999999999999998889999999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=270.21 Aligned_cols=288 Identities=19% Similarity=0.344 Sum_probs=232.8
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc---eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEE
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
.+..|.+.|+.+.||++|+ +|||++.|.+..||++.... ..+++.+|..+|..+.|+| |.++|++|+.|..+.
T Consensus 219 il~~htdEVWfl~FS~nGk--yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP--DdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGK--YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP--DDRYLLACGFDEVLS 294 (519)
T ss_pred hHhhCCCcEEEEEEcCCCe--eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC--CCCeEEecCchHhee
Confidence 5788999999999999999 89999999999999987544 3678999999999999965 447999999999999
Q ss_pred EEecCCCCceeeecCC-CCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC
Q 001318 524 AWLYDNLGSRVDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 602 (1101)
Q Consensus 524 ~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 602 (1101)
+||..++.....+... ... +.+++|.|||..+++|+.|+++..||++. ..+...++.
T Consensus 295 lwDv~tgd~~~~y~~~~~~S---------------------~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gv 352 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFS---------------------VSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGV 352 (519)
T ss_pred eccCCcchhhhhcccCcCCC---------------------cceeEEccCCceeEecCCCCcEEEecCCc-chhhccccc
Confidence 9999998877655433 333 44455555556899999999999999864 444444433
Q ss_pred CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 603 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 603 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
. ...|.+++.++||+++++.+.|..|++++.++.... .
T Consensus 353 r-~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr-~---------------------------------------- 390 (519)
T KOG0293|consen 353 R-DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR-G---------------------------------------- 390 (519)
T ss_pred c-cceeEEEEEcCCCcEEEEEecccceeeechhhhhhh-c----------------------------------------
Confidence 2 245889999999999999999999998876543000 0
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceE
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 762 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 762 (1101)
+
T Consensus 391 ----------------------------------------------------------------------l--------- 391 (519)
T KOG0293|consen 391 ----------------------------------------------------------------------L--------- 391 (519)
T ss_pred ----------------------------------------------------------------------c---------
Confidence 0
Q ss_pred EeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeE
Q 001318 763 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT 841 (1101)
Q Consensus 763 ~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~ 841 (1101)
.....+|+++..|.|++++.+.- +..+++||++....++.
T Consensus 392 ---------------------------------------ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 392 ---------------------------------------ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred ---------------------------------------ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 00345677778888888777765 78899999999999999
Q ss_pred ecCCCCC--eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCC-CCEEEEEeCCCceEEEeC
Q 001318 842 FMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 842 ~~~~~~~--i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~D~~v~iwd~ 918 (1101)
+.||... +..-+|--.+..++|+|++|+.|+||+..+++++..+.||...|++|+|+|. -.++||||.||+||||..
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 9998654 5556677646689999999999999999999999999999999999999995 467899999999999987
Q ss_pred CC
Q 001318 919 DG 920 (1101)
Q Consensus 919 ~~ 920 (1101)
..
T Consensus 513 ~~ 514 (519)
T KOG0293|consen 513 SD 514 (519)
T ss_pred Cc
Confidence 64
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=301.64 Aligned_cols=289 Identities=27% Similarity=0.423 Sum_probs=246.2
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
+...|.++.|+++|+.+++++.++.+++|+..... + .....+ .+|...|..++|+|+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l--~~h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLREL--SGHTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhccc--cccccceeeeEECCC
Confidence 46788999999999999999999999999872211 0 011112 249999999999999
Q ss_pred CCEEEEEe-CCeEEEEEC-CCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE
Q 001318 817 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
++++++++ |++|++||+ ..+..++++++|...|++++|+| +++++++|+.|++|+|||+++++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999999 899999999 56689999999999999999999 7799999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceee
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV 973 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~ 973 (1101)
++|++|+.+|++++.|+.|+|||+.++... +.....++.... .+..+.|+|++++++++ .|+.+++||+..+.+.
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 999999999999999999999999997643 445555655533 68999999999999995 7779999999999999
Q ss_pred eeccCCCCCC---CeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001318 974 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1050 (1101)
Q Consensus 974 ~~~~~~~h~~---~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l 1050 (1101)
..+. +|.. .+.+..++++++++++|+.|+.|++||+.++..++++. +|....+. .++++| ..+++
T Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~ 437 (456)
T KOG0266|consen 370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLI 437 (456)
T ss_pred eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCee
Confidence 8887 4443 55566778899999999999999999999999998887 33222233 788888 56889
Q ss_pred EEEe--cCCcEEEEecc
Q 001318 1051 ALGL--SDGGVHVFEPL 1065 (1101)
Q Consensus 1051 ~s~~--~dg~v~vW~~~ 1065 (1101)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 9888 79999999864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=300.75 Aligned_cols=257 Identities=21% Similarity=0.372 Sum_probs=216.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcc--eeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
|...|.|+.|||+|++ +++++.|+.+++|+..+.+ .+. .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 4889999999999997 9999999999999997766 322 36899999999999999999
Q ss_pred EEEEEcCCeEEEEEcc-CCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE
Q 001318 422 FGVAYSRHIVQIYSYH-GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500 (1101)
Q Consensus 422 las~~~d~~i~iwd~~-~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 500 (1101)
+++++.|++|+|||+. .+..++ ++.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 445444 7889999999999999996 899999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCc--eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
+++| .+++++|++++.|+.|++||+.++.. ...+..+... . .+..+.|+|++.++++
T Consensus 293 ~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------------------~-~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 293 GLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------------------A-PVTSVQFSPNGKYLLS 351 (456)
T ss_pred EEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------------------C-ceeEEEECCCCcEEEE
Confidence 9998 56678999999999999999998763 2333222211 1 4566667777779999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCC-CCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccc
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 647 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 647 (1101)
++.|+.+++||+..+..+..+..+... ..+.+..+++.+.++++|+.|+.|++|+..++ ..+..+.+|
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h 420 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGH 420 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCC
Confidence 999999999999999999998877653 23445556789999999999999999999886 555444443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=272.70 Aligned_cols=285 Identities=16% Similarity=0.249 Sum_probs=241.3
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
-...|..+.|.|+|+.|++++..|.+.+|+...-.+ + ..+ ..|++.|+++.|+++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-----------------E------til--QaHDs~Vr~m~ws~~ 149 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-----------------E------TIL--QAHDSPVRTMKWSHN 149 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH-----------------H------HHh--hhhcccceeEEEccC
Confidence 346789999999999999999999999998522111 1 111 239999999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
|.++++|+ +|.|++|+..- ..++.+..|. ..|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus 150 g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 99999999 89999999864 4455555554 8899999999 6667889999999999999988888889999999999
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceee
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 973 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~ 973 (1101)
+.|+|...+||++|.|..|++||.+++. ++....+|.. .|..+.|++++.+|++ +.|..+++||+.+.+.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 9999999999999999999999999965 5666667764 8999999999999999 79999999999988887
Q ss_pred eeccCCCCCCCeeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 974 KQWVPRESSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 974 ~~~~~~~h~~~i~~l~~spd-g~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
..+. +|...|++++|+|- ..+|.+|+.||.|..|.+...+.+..+. ..|... |+ +++|+| -|.+|++
T Consensus 300 ~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~------~AHd~~-iw--sl~~hP-lGhil~t 367 (464)
T KOG0284|consen 300 FTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP------PAHDGE-IW--SLAYHP-LGHILAT 367 (464)
T ss_pred HHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccCCC------cccccc-ee--eeeccc-cceeEee
Confidence 7765 89999999999994 5578899999999999998666654443 344344 78 999999 6899999
Q ss_pred EecCCcEEEEeccCCC
Q 001318 1053 GLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1053 ~~~dg~v~vW~~~~~~ 1068 (1101)
|+.|.++++|.-....
T Consensus 368 gsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 368 GSNDRTVRFWTRNRPG 383 (464)
T ss_pred cCCCcceeeeccCCCC
Confidence 9999999999875544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=245.84 Aligned_cols=246 Identities=17% Similarity=0.209 Sum_probs=217.5
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.+-.|++.|.++.|+-||+| .++++.|.+|++||...+..+++ +.+|...|..++.+.|.
T Consensus 12 ~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~~~s~Dn 71 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDAALSSDN 71 (307)
T ss_pred eecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceeeeccccccc
Confidence 34459999999999999997 88888999999999999999884 88999999999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC--CceEEEecCccc
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQYIFEGHEA 497 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~h~~ 497 (1101)
..+++|+.|+.|.+||+++|+.++ .+.+|.+.|+.++|+.+.. ++++|+.|.++++||.++ -++++.+.....
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred cccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 999999999999999999999877 6899999999999999988 899999999999999886 467888888888
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
.|.++... ++.+++|+.||++|.||++.+.....+- ..++++++|+++++..+
T Consensus 147 ~V~Si~v~----~heIvaGS~DGtvRtydiR~G~l~sDy~-----------------------g~pit~vs~s~d~nc~L 199 (307)
T KOG0316|consen 147 GVSSIDVA----EHEIVAGSVDGTVRTYDIRKGTLSSDYF-----------------------GHPITSVSFSKDGNCSL 199 (307)
T ss_pred ceeEEEec----ccEEEeeccCCcEEEEEeecceeehhhc-----------------------CCcceeEEecCCCCEEE
Confidence 99998753 2689999999999999999765433222 23667777777778999
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+++.|+++++.|-.+|+.+..+++|.....=..++++.....+++|++||.|++||+.+.
T Consensus 200 a~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 200 ASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred EeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 999999999999999999999998887665667888888899999999999999999877
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=267.70 Aligned_cols=232 Identities=20% Similarity=0.357 Sum_probs=203.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
....|.|+.+..+ .+++|..|++|.|||..+.+++. ++.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeecc--ceEEE
Confidence 4568999988643 39999999999999999887776 599999999999985 56999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce---EEEecCcccCeE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY 500 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~ 500 (1101)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. +++|++.|.+|.|||+.+... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 68899999999999743 799999999999999987654 356789999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
.+.|. . +++++++.|.+|++|++.+.+.+.++.+|...|.++.+ .++++++|+
T Consensus 325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY-----------------------r~rlvVSGS 377 (499)
T KOG0281|consen 325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY-----------------------RDRLVVSGS 377 (499)
T ss_pred eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc-----------------------cCeEEEecC
Confidence 99873 2 59999999999999999999999888888877666654 235789999
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 581 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.|.+|++||+..|.++..+++|.. -|.|+.| |.+.+++|..||+|++||+..+
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHH--hhhheee--cCceeeeccccceEEEEecccc
Confidence 999999999999999999998766 6889999 5688999999999999999876
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-30 Score=266.74 Aligned_cols=623 Identities=15% Similarity=0.176 Sum_probs=340.1
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 414 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 414 (1101)
.+.+..+-.|.+.|+.+.|+|-...|||||+.|..|+||.+..+-... ..-....+.+..-.|-|+.
T Consensus 69 ~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~ 135 (1012)
T KOG1445|consen 69 TRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLR 135 (1012)
T ss_pred ccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEee
Confidence 444555556999999999999887799999999999999998442211 0111223455566899999
Q ss_pred EecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC-CceEEEec
Q 001318 415 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFE 493 (1101)
Q Consensus 415 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~ 493 (1101)
|+|...-|...+..|+++|||+.+++.+. ++.+|.+.|.++.|+.||+ +|++.+.|+.|+|||.+. ++.++..+
T Consensus 136 fHpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te 210 (1012)
T KOG1445|consen 136 FHPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTE 210 (1012)
T ss_pred cccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccc
Confidence 99966666667778999999999988655 6899999999999999999 899999999999999874 67888888
Q ss_pred CcccCeE-EEeeeecCCccEEEEEecC----CcEEEEecCCCCc-eeeecCCC-CceeEEEEccCCceE-EeccccCcee
Q 001318 494 GHEAPVY-SVCPHHKENIQFIFSTALD----GKIKAWLYDNLGS-RVDYEAPG-RWCTTMAYSADGTRT-YQGFRKRSLG 565 (1101)
Q Consensus 494 ~h~~~v~-~v~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~-~~~~~~~~-~~v~~~~~s~~~~~~-~~~~~~~~~~ 565 (1101)
+|.+.-. .+.| -++-+.|++.+.+ ..|++||.+.-.. ..++.... ..|.---|.||.+.+ +.|.....+.
T Consensus 211 ~H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~ 288 (1012)
T KOG1445|consen 211 GHGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLF 288 (1012)
T ss_pred ccccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEE
Confidence 8876522 2444 3444577777765 5689999876432 22221111 112122234444322 2233333444
Q ss_pred EEEEcCCCCEEEEEe---------------------CCCc-EEEEECCCCceeEE--------E-cCC------------
Q 001318 566 VVQFDTTKNRFLAAG---------------------DDFS-IKFWDMDSVQLLTS--------I-DAD------------ 602 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~---------------------~dg~-i~iwd~~~~~~~~~--------~-~~~------------ 602 (1101)
++.+.+...+|.-+- .|+. .+++.+.....+-. + ..|
T Consensus 289 ~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p 368 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEP 368 (1012)
T ss_pred EEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCcc
Confidence 444333222111000 0000 01111111100000 0 000
Q ss_pred ---------CCCCCcCeEEEccCCC-------------EEE-EEeCCCcEEEE--------------------EecCc--
Q 001318 603 ---------GGLPASPRIRFNKDGC-------------LLA-VSTNDNGIKIL--------------------ATSDG-- 637 (1101)
Q Consensus 603 ---------~~~~~v~~~~~s~~~~-------------~l~-~~~~dg~i~iw--------------------~~~~~-- 637 (1101)
+....+..+++.|..+ ..+ +++ .+.+. |....
T Consensus 369 ~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~s---f~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpa 445 (1012)
T KOG1445|consen 369 GCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPS---FVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPA 445 (1012)
T ss_pred CcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCC---CccccCCCCCCCccccccccccCCCccccCCC
Confidence 0000111222221100 000 000 00000 00000
Q ss_pred ---ccccccc---------------------ccccccccccCCCCCCcccccchhh----hhh-hccccccccccccccc
Q 001318 638 ---IRLLRTF---------------------ENLAYDASRTSENSKPTISPISAAA----AAA-ATSAGLADRAASMVSI 688 (1101)
Q Consensus 638 ---~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~ 688 (1101)
+...+.+ ++.+..+......+.....+....+ +.. .+.+. ..+..|....
T Consensus 446 V~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~-~~ksvPe~~~ 524 (1012)
T KOG1445|consen 446 VPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPA-FGKSVPEQPP 524 (1012)
T ss_pred cCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCcc-ccccCCCCCC
Confidence 0000000 0000000000000000000000000 000 00000 0000000000
Q ss_pred CCCCCccccccCccceeeccC------CCcceeeeccccCCC------ccccccccCccccccceEEEEEcCCCceEE--
Q 001318 689 PGMNGDVRSLADVKPRITEES------NDKSKVWKLTELSEP------NQCRSLRLPENLRATKISRLIFTNSGNAIL-- 754 (1101)
Q Consensus 689 ~~~~~~~~~~~~~~~l~~~~~------d~~i~~w~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-- 754 (1101)
..+ ....+.......+.+. -|.+.-|.--..... ..++.+... -.+.-.. |+.+..+++
T Consensus 525 ~~~--g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~---~PgEsnG--fcan~~rvAVP 597 (1012)
T KOG1445|consen 525 VNF--GKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTR---LPGESNG--FCANNKRVAVP 597 (1012)
T ss_pred ccc--CCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhccccc---CCCccCc--eeeccceEEEE
Confidence 000 0000000000000000 011111111100000 001110000 0011111 233333333
Q ss_pred eeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEE
Q 001318 755 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFN 832 (1101)
Q Consensus 755 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd 832 (1101)
..+..|.|-||+++....-+++.. .+......|+.+.|.| |.+.||+++ ||.|++|.
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~---------------------p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr 656 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVM---------------------PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWR 656 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCcccc---------------------cccccCceeeecccCCCChHHeeecccCceEEEEE
Confidence 355679999999976554444432 2222566789999998 667888888 89999999
Q ss_pred CCCCc-------eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE
Q 001318 833 MMTFK-------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 905 (1101)
Q Consensus 833 ~~~~~-------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~ 905 (1101)
+..+. .-..+..|...|+++.|+|--...||+++.|-+|++||+.+++....+.+|.+.|.+++|||||+.+|
T Consensus 657 ~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~A 736 (1012)
T KOG1445|consen 657 LTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIA 736 (1012)
T ss_pred eccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCccee
Confidence 87543 33557889999999999997788999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeC----CeEEEEEcCCcee--eeeccC
Q 001318 906 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLEC--VKQWVP 978 (1101)
Q Consensus 906 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d----~~v~vwd~~~~~~--~~~~~~ 978 (1101)
|.+.||+|+||+...++. .+..-.+.. ...-..+.|.-||+++++ +.| ++|.+||..+... +.+...
T Consensus 737 tVcKDg~~rVy~Prs~e~----pv~Eg~gpv--gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l 810 (1012)
T KOG1445|consen 737 TVCKDGTLRVYEPRSREQ----PVYEGKGPV--GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL 810 (1012)
T ss_pred eeecCceEEEeCCCCCCC----ccccCCCCc--cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee
Confidence 999999999999887653 222222222 134467899999999988 544 5799999876542 211111
Q ss_pred CCCCCCeeEEEEcCCCC-EEEEEEcCCeEEEEEcCCcee
Q 001318 979 RESSAPITHATFSCDSQ-LVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 979 ~~h~~~i~~l~~spdg~-~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
+- .-.+.--.+.+|.. ++++|-.|..|.+|.+...+.
T Consensus 811 Dv-aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 811 DV-APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred cc-cCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 10 11222223455655 467888999999999865543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=274.61 Aligned_cols=264 Identities=17% Similarity=0.243 Sum_probs=215.7
Q ss_pred Ccceeecc-cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCC-cceeEeeeeeeeecCCCCcccccccccCCCCCeEE
Q 001318 335 PKTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 412 (1101)
Q Consensus 335 ~~~~~~~~-~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 412 (1101)
|++..+++ +|+..|+++.|.|-.-+||++|+.|+.|+||++.. +++++ ++.+|..+|..
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr-------------------tf~gH~k~Vrd 263 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR-------------------TFKGHRKPVRD 263 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh-------------------hhhcchhhhhh
Confidence 44444444 59999999999995445899999999999999987 55555 58999999999
Q ss_pred EEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe
Q 001318 413 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 492 (1101)
Q Consensus 413 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 492 (1101)
++|+++|..+++++.|+.|++||+++|+++..+. ....++|+.|.||+.+ .+++|+.|+.|+.||+++++.++.+
T Consensus 264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred hhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHHH
Confidence 9999999999999999999999999999876432 2467899999999955 7899999999999999999999999
Q ss_pred cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 493 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
..|.+.|..+.|. ++|..+++.+.|+++++|+.+..-.+..... .......++..+|+
T Consensus 339 d~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~--------------------~~~hsmP~~~~~P~ 396 (503)
T KOG0282|consen 339 DRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIAD--------------------PEMHTMPCLTLHPN 396 (503)
T ss_pred HhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcc--------------------hhhccCcceecCCC
Confidence 9999999999984 5668999999999999999987544432211 11124556777888
Q ss_pred CCEEEEEeCCCcEEEEECCCC---ceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
++++++-+.|+.|.++.+... .....+.+|.-.+.-..+.|||||.+|++|+.||.+.+||..+- +.+..+.
T Consensus 397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lk 471 (503)
T KOG0282|consen 397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLK 471 (503)
T ss_pred CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccc
Confidence 889999999999999986543 22344556655556678999999999999999999999999876 4444443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-30 Score=239.30 Aligned_cols=286 Identities=17% Similarity=0.267 Sum_probs=231.3
Q ss_pred ccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 401 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 401 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
.++.+|.++|.++.|+-||+|.++++.|++|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|+.|.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3688999999999999999999999999999999999998777 7899999999999999998 6999999999999
Q ss_pred EeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC--CceeeecCCCCceeEEEEccCCceEEec
Q 001318 481 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 481 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
||+.+|+.++.|.+|.+.|+.+.|+. +...+++|+.|.++++||.+.. ++++.+......|.++.++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--------- 154 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--------- 154 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---------
Confidence 99999999999999999999999854 4479999999999999999874 3444444444445444432
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
+..+++|+.||+++.||++.|+....+-++ +|+|++|++|++..++++.|+++++.|-.+|
T Consensus 155 --------------~heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tG- 215 (307)
T KOG0316|consen 155 --------------EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETG- 215 (307)
T ss_pred --------------ccEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchh-
Confidence 346999999999999999999876665433 6999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
++++...+|...-.
T Consensus 216 klL~sYkGhkn~ey------------------------------------------------------------------ 229 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEY------------------------------------------------------------------ 229 (307)
T ss_pred HHHHHhccccccee------------------------------------------------------------------
Confidence 78887777654311
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
-...+++.....++++++||.+++||+... ..+..
T Consensus 230 ----------------------kldc~l~qsdthV~sgSEDG~Vy~wdLvd~----------------------~~~sk- 264 (307)
T KOG0316|consen 230 ----------------------KLDCCLNQSDTHVFSGSEDGKVYFWDLVDE----------------------TQISK- 264 (307)
T ss_pred ----------------------eeeeeecccceeEEeccCCceEEEEEeccc----------------------eeeee-
Confidence 123455556667888888999998887321 11111
Q ss_pred cCCCCCCCC-eeEEEEecCCCEEEEEeCCeEEEEECC
Q 001318 799 VTDSNPEEA-VPCFALSKNDSYVMSASGGKISLFNMM 834 (1101)
Q Consensus 799 ~~~~~~~~~-i~~~~~s~dg~~la~~sdg~i~vwd~~ 834 (1101)
+.. +... +..+.+.|.-..++++.++.+..|.-+
T Consensus 265 ~~~--~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~~ 299 (307)
T KOG0316|consen 265 LSV--VSTVIVTDLSCHPTMDDFITATGHGDLFWYQE 299 (307)
T ss_pred ecc--CCceeEEeeecccCccceeEecCCceeceeeh
Confidence 111 3333 788999999888999888888888643
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-32 Score=262.85 Aligned_cols=272 Identities=21% Similarity=0.334 Sum_probs=227.4
Q ss_pred ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC
Q 001318 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 530 (1101)
Q Consensus 451 h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~ 530 (1101)
....|+|+.+. |+ .+++|..|++|+|||..+-.+++.+.||++.|.|+.| +. ..+++|+.|.+|++||++++
T Consensus 196 ~skgVYClQYD-D~---kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~--rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD-DE---KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DE--RVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEec-ch---hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cc--eEEEecCCCceEEEEeccCC
Confidence 45789999984 33 4899999999999999999999999999999998876 22 59999999999999999999
Q ss_pred CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEEcCCCCCCC
Q 001318 531 GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPA 607 (1101)
Q Consensus 531 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~ 607 (1101)
+.+.++-.|...|..+.|+. +++++++.|.++.+||+.....+ ..+. +|...
T Consensus 268 e~l~tlihHceaVLhlrf~n-----------------------g~mvtcSkDrsiaVWdm~sps~it~rrVLv--GHrAa 322 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN-----------------------GYMVTCSKDRSIAVWDMASPTDITLRRVLV--GHRAA 322 (499)
T ss_pred chhhHHhhhcceeEEEEEeC-----------------------CEEEEecCCceeEEEeccCchHHHHHHHHh--hhhhh
Confidence 99999988888888887754 47999999999999999876532 2333 33456
Q ss_pred cCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccc
Q 001318 608 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS 687 (1101)
Q Consensus 608 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1101)
|+.+.|+ .+++++++.|.+|++|++.++ +.++.+.+
T Consensus 323 VNvVdfd--~kyIVsASgDRTikvW~~st~-efvRtl~g----------------------------------------- 358 (499)
T KOG0281|consen 323 VNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVRTLNG----------------------------------------- 358 (499)
T ss_pred eeeeccc--cceEEEecCCceEEEEeccce-eeehhhhc-----------------------------------------
Confidence 8888884 569999999999999999888 55555543
Q ss_pred cCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeec
Q 001318 688 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 767 (1101)
Q Consensus 688 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 767 (1101)
T Consensus 359 -------------------------------------------------------------------------------- 358 (499)
T KOG0281|consen 359 -------------------------------------------------------------------------------- 358 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCC
Q 001318 768 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP 846 (1101)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~ 846 (1101)
|...|.|+.+ .|+++++|+ |.+|++||++.|.+++.++||+
T Consensus 359 ------------------------------------HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 359 ------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred ------------------------------------ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 3333333332 677888998 8999999999999999999999
Q ss_pred CCeEEEEEecCCCcEEEEEeccCeEEEEEeecce---------EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 847 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
.-|.|+.|. .+.+++|..||+|+|||+.++. |+.++..|++.|..+.| |...+++++.|.+|.|||
T Consensus 401 eLvRciRFd---~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 401 ELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred Hhhhheeec---CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 999999995 4789999999999999998753 45666789999999999 778999999999999999
Q ss_pred CCCcc
Q 001318 918 SDGWE 922 (1101)
Q Consensus 918 ~~~~~ 922 (1101)
...+.
T Consensus 476 Fl~~~ 480 (499)
T KOG0281|consen 476 FLNGP 480 (499)
T ss_pred cCCCC
Confidence 98754
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=305.97 Aligned_cols=310 Identities=15% Similarity=0.218 Sum_probs=224.2
Q ss_pred CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCC----cee
Q 001318 367 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEV 442 (1101)
Q Consensus 367 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~ 442 (1101)
+|.+++|+..+.+..... ....+..|.+.|.+++|+|+|++||+|+.|+.|+|||..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 678889988765543210 11125569999999999999999999999999999998642 111
Q ss_pred e-eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCc
Q 001318 443 R-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 521 (1101)
Q Consensus 443 ~-~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~ 521 (1101)
. ....+. +...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 3468999999986433 7999999999999999999999999999999999998642 4467888888888
Q ss_pred EEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 001318 522 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 522 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
|++||+.+. ..+..+..
T Consensus 600 v~iWd~~~~---------------------------------------------------------------~~~~~~~~ 616 (793)
T PLN00181 600 VKLWSINQG---------------------------------------------------------------VSIGTIKT 616 (793)
T ss_pred EEEEECCCC---------------------------------------------------------------cEEEEEec
Confidence 887776542 22222221
Q ss_pred CCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccc
Q 001318 602 DGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 680 (1101)
Q Consensus 602 ~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1101)
+ ..+.++.|+ +++.+|++|+.||.|++||+.++......+
T Consensus 617 ~---~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------------------------------------ 657 (793)
T PLN00181 617 K---ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------------------------------------ 657 (793)
T ss_pred C---CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------------------------------------
Confidence 1 136778885 579999999999999999986541111100
Q ss_pred ccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCc
Q 001318 681 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 760 (1101)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 760 (1101)
.+
T Consensus 658 ------------------------------------------------------~~------------------------ 659 (793)
T PLN00181 658 ------------------------------------------------------IG------------------------ 659 (793)
T ss_pred ------------------------------------------------------cC------------------------
Confidence 01
Q ss_pred eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC----
Q 001318 761 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT---- 835 (1101)
Q Consensus 761 ~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~---- 835 (1101)
|...|.++.|. ++.++++++ |++|++||+..
T Consensus 660 -------------------------------------------h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 660 -------------------------------------------HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred -------------------------------------------CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 33344444443 344445544 55555555542
Q ss_pred --CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee-------------ecCcccCeeEEEEcCC
Q 001318 836 --FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-------------LKGHSKRITGLAFSHA 900 (1101)
Q Consensus 836 --~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-------------l~~h~~~V~~l~~s~d 900 (1101)
...+..+.+|...+.+++|++ ++.+||+|+.||.|++|+......+.. ...|...|.+++|+++
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 345678889999999999999 889999999999999999765432211 2345667999999999
Q ss_pred CCEEEEEeCCCceEEEeC
Q 001318 901 LNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 901 g~~l~s~s~D~~v~iwd~ 918 (1101)
+..|++|+.||+|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=243.96 Aligned_cols=288 Identities=17% Similarity=0.291 Sum_probs=243.7
Q ss_pred cccCCCCCeEEEEEec---CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 402 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
+..||+.+|..++||| +|-+|++++.|+.=.+-+-++|.-+. ++.||.+.|+......+.. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 4679999999999997 89999999999999888889998777 7999999999999988877 68999999999
Q ss_pred EEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec
Q 001318 479 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 479 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
+|||.-+|..+++|. |..-|.+++|+ .|.++|++|+.++.+|+||++..+..
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~--~ds~~lltgg~ekllrvfdln~p~Ap------------------------- 135 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFS--QDSNYLLTGGQEKLLRVFDLNRPKAP------------------------- 135 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEec--ccchhhhccchHHHhhhhhccCCCCC-------------------------
Confidence 999999999999997 88889999984 45578888888888888877653321
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
...+. ++...|..+.|....+.+++.+.|++||+||.+++
T Consensus 136 -------------------------------------p~E~~--ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg- 175 (334)
T KOG0278|consen 136 -------------------------------------PKEIS--GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG- 175 (334)
T ss_pred -------------------------------------chhhc--CCCCcceeEEEeccCceEEeeccCCceEEEEeccC-
Confidence 12222 23446788888888888898899999999999887
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
..++.+.
T Consensus 176 t~v~sL~------------------------------------------------------------------------- 182 (334)
T KOG0278|consen 176 TEVQSLE------------------------------------------------------------------------- 182 (334)
T ss_pred cEEEEEe-------------------------------------------------------------------------
Confidence 2211110
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
T Consensus 183 -------------------------------------------------------------------------------- 182 (334)
T KOG0278|consen 183 -------------------------------------------------------------------------------- 182 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 799 VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 799 ~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
....|+++.++++|++|.++..+.|.+||..+...++.++ -...|.+..++| +..+++.|++|+.++.||..+
T Consensus 183 -----~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 183 -----FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred -----cCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEeccC
Confidence 3456788889999999988888999999999999888876 345699999999 778999999999999999999
Q ss_pred ceEeeee-cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcc
Q 001318 879 DEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 922 (1101)
Q Consensus 879 ~~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~ 922 (1101)
++.+..+ ++|.++|.||.|+|||...++|+.||+|++|.+..++
T Consensus 256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999886 9999999999999999999999999999999887654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=268.71 Aligned_cols=246 Identities=25% Similarity=0.412 Sum_probs=208.6
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
.+|.+.|++++|+|++++ +++|+.||.|.+|++.+++... .+..|...+.++.|+|++++
T Consensus 6 ~~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~ 65 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTY 65 (289)
T ss_pred cccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCE
Confidence 369999999999999995 8899999999999999876544 36788899999999999999
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEE
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 501 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 501 (1101)
|++++.|+.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++.+..+..|...+.+
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 140 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS 140 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence 9999999999999999876554 4668888999999999977 7888888999999999999999999999999999
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
++|++. +.++++++.|+.|++||++..+....+..+...+.++.| +|+++.+++++.
T Consensus 141 ~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~---------------------~~~~~~l~~~~~ 197 (289)
T cd00200 141 VAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF---------------------SPDGEKLLSSSS 197 (289)
T ss_pred EEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEE---------------------CCCcCEEEEecC
Confidence 998654 578888888999999999876666666555544555554 455557888888
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 582 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++.|++||+.+++.+..+..+. ..+.++.|++++.++++++.+|.|++|++.++
T Consensus 198 ~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CCcEEEEECCCCceecchhhcC--CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 9999999999988888875443 36899999999999998888999999998765
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=268.29 Aligned_cols=285 Identities=28% Similarity=0.472 Sum_probs=239.2
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEe
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 526 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd 526 (1101)
++.+|.++|.+++|+|+++ ++++++.|+.|++|++.+++....+..|...+..+.|.+ +++++++++.||.|++||
T Consensus 4 ~~~~h~~~i~~~~~~~~~~--~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA--DGTYLASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcCCCC--EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC--CCCEEEEEcCCCeEEEEE
Confidence 4678999999999999988 799999999999999999988888999999998888854 447899999999999999
Q ss_pred cCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 001318 527 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 606 (1101)
Q Consensus 527 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 606 (1101)
+...+....+..+...+.++.|+++ ++++++++.++.|++||+.+++....+..+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~---------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~ 136 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD---------------------GRILSSSSRDKTIKVWDVETGKCLTTLRGH--TD 136 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC---------------------CCEEEEecCCCeEEEEECCCcEEEEEeccC--CC
Confidence 9987666666655555555555544 456777777999999999988888888744 34
Q ss_pred CcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccccc
Q 001318 607 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 686 (1101)
Q Consensus 607 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1101)
.+.++.|+|++.++++++.++.|++||+.++ +....+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~----------------------------------------- 174 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLT----------------------------------------- 174 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccceeEe-----------------------------------------
Confidence 6899999999999999888999999997644 1110000
Q ss_pred ccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeee
Q 001318 687 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 687 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
T Consensus 175 -------------------------------------------------------------------------------- 174 (289)
T cd00200 175 -------------------------------------------------------------------------------- 174 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC
Q 001318 767 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 845 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~ 845 (1101)
.|...+.+++|+|+++.+++++ ++.|++||+.+++.+..+..|
T Consensus 175 ------------------------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 218 (289)
T cd00200 175 ------------------------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218 (289)
T ss_pred ------------------------------------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc
Confidence 0445677788888887777777 888999999888888888788
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
...+.+++|++ ++.++++++.||.|++||+.+++....+..|...|.+++|++++.+|++++.|+.+++|+
T Consensus 219 ~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 219 ENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88999999999 788999888899999999999999999999999999999999999999999999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=238.98 Aligned_cols=295 Identities=19% Similarity=0.288 Sum_probs=229.3
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.||+.+++.+.++.+|.+|.+++.|.++.||-..+|+.+. ++.||.+.|+|+....+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999998998776 7999999999999999999 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC-----CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEE
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
|+++|+++..++ ...+|..+.|++.. ++++....+ +.|.++|++....
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~------------------------ 132 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSS------------------------ 132 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChh------------------------
Confidence 999999999998 56788888886543 444443321 2344444332100
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
++...++...+..+. ..++.+-|+|-+++|++|..||.|.+||+++
T Consensus 133 --------------------------------~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 133 --------------------------------DIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred --------------------------------hhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 111344455555443 3688899999999999999999999999988
Q ss_pred ccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee
Q 001318 637 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 716 (1101)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 716 (1101)
+.+.+...+
T Consensus 179 g~~~v~s~~----------------------------------------------------------------------- 187 (327)
T KOG0643|consen 179 GKELVDSDE----------------------------------------------------------------------- 187 (327)
T ss_pred Cceeeechh-----------------------------------------------------------------------
Confidence 843322110
Q ss_pred eccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccc
Q 001318 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~ 796 (1101)
T Consensus 188 -------------------------------------------------------------------------------- 187 (327)
T KOG0643|consen 188 -------------------------------------------------------------------------------- 187 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC------
Q 001318 797 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------ 869 (1101)
Q Consensus 797 ~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------ 869 (1101)
.|...|+.+.+++|..++++++ |.+-++||+.+.++++++. ...++++.+++|.....+..|+.+.
T Consensus 188 ------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT 260 (327)
T KOG0643|consen 188 ------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTT 260 (327)
T ss_pred ------hhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeee
Confidence 1566778888888888888888 8889999999999999887 4667999999994444444444332
Q ss_pred -------eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 870 -------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 870 -------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
.-++|++...+.+..+++|-++|++|+|+|||+..+||+.||.|++.-.+.
T Consensus 261 ~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 261 STRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 123334334456778899999999999999999999999999999987654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=239.61 Aligned_cols=270 Identities=14% Similarity=0.184 Sum_probs=202.8
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcc---cccccccCCCCCeEEEEE
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP---LQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~l~~ 415 (1101)
..+..|++.+.+.+|||||. |+|||+.|..|+|.|++..-... +.-++..+... -...++..|.+.|+++.|
T Consensus 106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks----~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS----KPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc----chhhhccCCcccCCceEeehhhccCcccceee
Confidence 34566999999999999999 69999999999999997311000 00011111111 112368899999999999
Q ss_pred ecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe---
Q 001318 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--- 492 (1101)
Q Consensus 416 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--- 492 (1101)
+|....|++|+.|++|+++|+..-...+-+..+. ...+|.++.|.|.|. +|+.|.+-.++++||+.+-++...-
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcc
Confidence 9999999999999999999998654333332333 457899999999999 7899999999999999998886543
Q ss_pred cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 493 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
..|.+.|+++.+ ++.+.+.++++.||.|++||--+.+++.++.. .|.+..+....|..+
T Consensus 258 ~qht~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~-------------------AH~gsevcSa~Ftkn 316 (430)
T KOG0640|consen 258 DQHTGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN-------------------AHGGSEVCSAVFTKN 316 (430)
T ss_pred cccccceeEEEe--cCCccEEEEeccCCcEEeeccccHHHHHHHHh-------------------hcCCceeeeEEEccC
Confidence 469999999986 56668999999999999999887777655432 223345666667777
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCC---cCeEEEccCCCEEEEEeC-CCcEEEEEecCc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDGCLLAVSTN-DNGIKILATSDG 637 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~ 637 (1101)
++++++.|.|..+++|.+.+++++..+.+.+..+. -+...|+....+++.-.+ .+.+.-||.+++
T Consensus 317 ~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 317 GKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred CeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 77999999999999999999999999876533221 234556666666665433 467888887776
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=302.14 Aligned_cols=321 Identities=12% Similarity=0.154 Sum_probs=240.8
Q ss_pred CCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccC
Q 001318 710 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 789 (1101)
Q Consensus 710 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~ 789 (1101)
+|-+++|+............-.+ ..|...|.+++|+|+|+++++++.|+.|+||++...... +.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~--~~------------ 520 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDL--LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD--GR------------ 520 (793)
T ss_pred hhhhhhhcccceEEEEeeccccc--cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc--cc------------
Confidence 35566666654332221111111 237889999999999999999999999999997431100 00
Q ss_pred CCccccccccCCCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec
Q 001318 790 PSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 867 (1101)
Q Consensus 790 ~~g~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 867 (1101)
........+ .+...+.+++|++ ++.+|++++ ||+|++||+.+++.+..+.+|...|.+++|+|.++.+|++|+.
T Consensus 521 -~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 521 -DIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred -ccccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence 000000001 1346788999987 478899998 9999999999999999999999999999999757899999999
Q ss_pred cCeEEEEEeecceEeeeecCcccCeeEEEEc-CCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE
Q 001318 868 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 868 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s-~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
||.|++||+.++..+..+..| ..|.++.|+ ++|.+|++|+.|++|++||+..... ......+|. ..|..+.
T Consensus 597 Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v~ 668 (793)
T PLN00181 597 DGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYVR 668 (793)
T ss_pred CCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEEE
Confidence 999999999999888888765 679999995 5799999999999999999987432 223334554 3789999
Q ss_pred EcCCCcEEEE-EeCCeEEEEEcCCc------eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeee
Q 001318 947 FHQDQIHFLV-VHETQLAIFETTKL------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 947 ~s~dg~~la~-~~d~~v~vwd~~~~------~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~ 1019 (1101)
|. ++.++++ +.|+.|++||+..+ ..+..+. +|...+.+++|+|++.+|++|+.|+.|++|+......+..
T Consensus 669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS 745 (793)
T ss_pred Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE
Confidence 97 6667777 68999999999753 4455554 7899999999999999999999999999999877655433
Q ss_pred cCCCcc--cC---CCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1020 INPSAY--LP---AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1020 ~~~~~~--~~---~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
+..... .. ..+....|. +++|+| ++.+|++|+.||+|+||++
T Consensus 746 ~~~~~~~~~~~~~~~~~~~~V~--~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 746 YKFKTIDPVSGLEVDDASQFIS--SVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EecccCCcccccccCCCCcEEE--EEEEcC-CCCeEEEecCCCcEEEEec
Confidence 221110 00 011122244 899999 7899999999999999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=248.25 Aligned_cols=291 Identities=19% Similarity=0.295 Sum_probs=237.5
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
....+.+..|+|||++|++++-||.|.+|++.++....+-+..+. +..+ -++..|.|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~fM--------Mmd~aVlci~FSRD 274 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DNFM--------MMDDAVLCISFSRD 274 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------ccee--------ecccceEEEeeccc
Confidence 456788999999999999999999999999866554333222211 1111 16889999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEec-CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
..++|+|+ ||+|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.+++|--+++|+++..++||++-|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999997 8999999999999 8888999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC-CcEEEE-EeCCeEEEEEcCCcee
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFETTKLEC 972 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~-~~d~~v~vwd~~~~~~ 972 (1101)
..|++||.++++++.||+|++|+.++++. +.++.... ...+|..+..-|- -..+++ ...+++.|.++. |+.
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC-----~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv 426 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTEC-----LSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV 426 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhh-----hhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE
Confidence 99999999999999999999999998664 33322111 1245667766664 345555 467889998886 677
Q ss_pred eeeccCCC-CCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001318 973 VKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1051 (1101)
Q Consensus 973 ~~~~~~~~-h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~ 1051 (1101)
++.+.... -.+...+.++||.|.++.+.++|+.++.|.+.+|.+...+..+. --++.++.+| ..++++
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE----------kdvIGl~HHP-HqNllA 495 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE----------KDVIGLTHHP-HQNLLA 495 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc----------ccccccccCc-ccchhh
Confidence 77765322 25567788999999999999999999999999999988877322 2244699999 468999
Q ss_pred EEecCCcEEEEe
Q 001318 1052 LGLSDGGVHVFE 1063 (1101)
Q Consensus 1052 s~~~dg~v~vW~ 1063 (1101)
+-++||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=219.00 Aligned_cols=276 Identities=17% Similarity=0.246 Sum_probs=212.4
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
..+.++.....|.+++|+|.|. |.|+|+..++.+|.....-..+... .+..........+.-+.|.+.|+|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEec
Confidence 3556778899999999999999 6999999999998866432222100 0000000111122356799999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEcc--CCceeeeeeeeccccCCeeEEEEcCC---CCeEEEEEec-CCCcEEEEeCCCCceEE
Q 001318 417 PDGSLFGVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAKQY 490 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~V~~~~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~~~ 490 (1101)
|+|++||+|+.|++|++.-.+ +........++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+..+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence 999999999999999987554 43334444568889999999999654 333 566654 68889999999999999
Q ss_pred EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEc
Q 001318 491 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570 (1101)
Q Consensus 491 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 570 (1101)
.+.||++.|.++- +-++-.+++|+.|.+|++||++-..++..+... +.-.|.....+..+++.
T Consensus 178 a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~vd 240 (350)
T KOG0641|consen 178 ALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVAVD 240 (350)
T ss_pred eecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEEEC
Confidence 9999999998874 345579999999999999999876665544321 11112233467788889
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 571 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 571 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
|.|++|++|-.|....+||++.++.++.+..| ...|.|+.|+|...|+++++.|..|++-|+...
T Consensus 241 psgrll~sg~~dssc~lydirg~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 99999999999999999999999999999755 447999999999999999999999999987644
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=235.78 Aligned_cols=297 Identities=17% Similarity=0.276 Sum_probs=250.3
Q ss_pred cccccceEEEEEcC---CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 735 NLRATKISRLIFTN---SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
.+|..+|..++|+| +|-.|++++.|+.-.+ .+-++|..+.. + .+|.+.|.+.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pml----------------------r~g~tgdwigt-f--eghkgavw~~ 65 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPML----------------------RNGDTGDWIGT-F--EGHKGAVWSA 65 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchh----------------------ccCCCCCcEEe-e--eccCcceeee
Confidence 56999999999975 8989999999976543 23355554443 2 2499999999
Q ss_pred EEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeeecCcc
Q 001318 812 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS 889 (1101)
Q Consensus 812 ~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~ 889 (1101)
++..+....|+++ |-+-++||.-+|..+..|. |..-|.+++|+. |.++|++|+.+..+||||++.. .....+.+|.
T Consensus 66 ~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 66 TLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred ecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence 9999999999988 8899999999999999987 888899999999 9999999999999999999874 3567789999
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCC
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 969 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~ 969 (1101)
+.|..+.|....+.++|++.|++||+||..++...... ... ..|.++.+++||++|.++..+.|..||..+
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL--~~~-------s~VtSlEvs~dG~ilTia~gssV~Fwdaks 214 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL--EFN-------SPVTSLEVSQDGRILTIAYGSSVKFWDAKS 214 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE--ecC-------CCCcceeeccCCCEEEEecCceeEEecccc
Confidence 99999999998899999999999999999997643322 221 478999999999999999999999999999
Q ss_pred ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCE
Q 001318 970 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1049 (1101)
Q Consensus 970 ~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~ 1049 (1101)
...++.+.. ...|.+..++|+...+++|++|..++.||..+|+.+..+.. ||.+. |. ++.|+| ||..
T Consensus 215 f~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk------gh~gp-Vh--cVrFSP-dGE~ 281 (334)
T KOG0278|consen 215 FGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK------GHFGP-VH--CVRFSP-DGEL 281 (334)
T ss_pred ccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc------CCCCc-eE--EEEECC-CCce
Confidence 999988765 56899999999999999999999999999999999877532 33233 55 999999 7999
Q ss_pred EEEEecCCcEEEEeccCCC--ccccCCCCCCCC
Q 001318 1050 FALGLSDGGVHVFEPLESE--GKWGVPPPVDNG 1080 (1101)
Q Consensus 1050 l~s~~~dg~v~vW~~~~~~--~~~~~~~~~~~~ 1080 (1101)
.++||.||+|++|....++ +.|.-..|-+.|
T Consensus 282 yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ 314 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDG 314 (334)
T ss_pred eeccCCCceEEEEEecCCCchhhccccChhhhc
Confidence 9999999999999998877 455555554443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=240.19 Aligned_cols=306 Identities=17% Similarity=0.295 Sum_probs=231.5
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCC-eEEEEEecCCCcEEEE
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVW 481 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~-~~~l~s~~~d~~i~iw 481 (1101)
-..|.+.|.++... ++++++|+.||.+++||..... .. .+.||.++|.+++|.-.+. .-.+++++.|.++++|
T Consensus 101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cccchhhhhhhccc--CceEEEeecCCeeEEEecCCce-EE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 34689999999988 8999999999999999998643 32 5889999999888853332 1159999999999999
Q ss_pred eCCCCceE----EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCc------eeEEEEccC
Q 001318 482 DATNGAKQ----YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW------CTTMAYSAD 551 (1101)
Q Consensus 482 d~~~~~~~----~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~------v~~~~~s~~ 551 (1101)
-++.++.. +...||...|.++.. .++|..+++|+-|.+|.+|+..+ ...-.++..... -..-.-...
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVET-DEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCC-CccccccccchhhhhhhhhhhcccccC
Confidence 99877543 344599999999986 56678999999999999999322 111111000000 000000000
Q ss_pred CceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001318 552 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 631 (1101)
...++.||+. ++..+.|++ ...+++++.|.+|+.||+.++..+..+.... .++|+.++|..++|++|+.|..+++
T Consensus 252 P~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 252 PLVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred ceEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceee
Confidence 0022334433 555566665 4569999999999999999999988887544 4889999999999999999999999
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 711 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 711 (1101)
||.+++.
T Consensus 327 ~DPR~~~------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 327 WDPRTGD------------------------------------------------------------------------- 333 (423)
T ss_pred cCCCCCC-------------------------------------------------------------------------
Confidence 9876550
Q ss_pred cceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCC
Q 001318 712 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 791 (1101)
Q Consensus 712 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~ 791 (1101)
|
T Consensus 334 --------------------------------------g----------------------------------------- 334 (423)
T KOG0313|consen 334 --------------------------------------G----------------------------------------- 334 (423)
T ss_pred --------------------------------------C-----------------------------------------
Confidence 0
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeE
Q 001318 792 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSI 871 (1101)
Q Consensus 792 g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v 871 (1101)
.-...+|.+|.+.|.++.|+|.+..+|++|+.|+++
T Consensus 335 --------------------------------------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~ 370 (423)
T KOG0313|consen 335 --------------------------------------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTV 370 (423)
T ss_pred --------------------------------------------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeE
Confidence 001235667888899999999888899999999999
Q ss_pred EEEEeecce-EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 872 QIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 872 ~vwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
++||+++.+ .+..+.+|.+.|.++.|+ ++..|+|||.|.+|+|+.-.
T Consensus 371 klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 371 KLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999876 899999999999999997 56799999999999998654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=245.67 Aligned_cols=286 Identities=17% Similarity=0.270 Sum_probs=236.7
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
..+.|.+++|+|...+=++.+..-.+.||+.... ..... +. .....+++++|-.|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~-~s--rFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKT-FS--RFKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhh-HH--hhccceeEEEeecC
Confidence 4578999999997776555555566777765321 11110 11 15678999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEE
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 895 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 895 (1101)
|+++|+|. .|.|+|||+++...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.+.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999999 79999999888788899999999999999999999999999999999999999988877899999999999
Q ss_pred EEcCCC-CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeee
Q 001318 896 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 974 (1101)
Q Consensus 896 ~~s~dg-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~ 974 (1101)
+|+|-. ..++|||.||+|++||+.... ........| .+|..+.|-|.|..+|++....|+|||+.+|....
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence 999864 588999999999999998743 233344434 37899999999999999999999999999766554
Q ss_pred eccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001318 975 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 975 ~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
.... .|...|+|+++..|++.|++|+.|+.|+|||+.+.+.+..+. .+.. |. +++-+| |+..++.|.
T Consensus 232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~p-----vL--siavs~-dd~t~viGm 298 (487)
T KOG0310|consen 232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGP-----VL--SIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccc-----ee--eEEecC-CCceEEEec
Confidence 4432 489999999999999999999999999999999999998887 4443 44 888888 568999999
Q ss_pred cCCcEEEEeccCCC
Q 001318 1055 SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1055 ~dg~v~vW~~~~~~ 1068 (1101)
.||.+.+=+....+
T Consensus 299 snGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 299 SNGLVSIRRREVKK 312 (487)
T ss_pred ccceeeeehhhccc
Confidence 99999887655444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=222.89 Aligned_cols=277 Identities=16% Similarity=0.235 Sum_probs=230.7
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE--ecCcccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
.+.+|...|.+++|+-+|. .|++|+.|+++.+|++..++.... ..+|.+.|..++|++... ..+++++.|.+|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 4678999999999999999 799999999999999998866654 468999999999987654 68999999999999
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 604 (1101)
||.+..++.......... ..+.|+|+|+++++++.|..|.+.|.++.+.....+...
T Consensus 92 wd~r~~k~~~~i~~~~en----------------------i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~- 148 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGEN----------------------INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF- 148 (313)
T ss_pred EEeccCcEEEEeeccCcc----------------------eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-
Confidence 999998877655443332 235677777899999999999999999988777665432
Q ss_pred CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccc
Q 001318 605 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 684 (1101)
Q Consensus 605 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1101)
.++-++|+-++.+++.....|.|.|...... +.+..+
T Consensus 149 --e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si---------------------------------------- 185 (313)
T KOG1407|consen 149 --EVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSI---------------------------------------- 185 (313)
T ss_pred --eeeeeeecCCCCEEEEecCCceEEEEecccc-cccccc----------------------------------------
Confidence 4677899888888777777788887764322 111100
Q ss_pred ccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEe
Q 001318 685 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 764 (1101)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 764 (1101)
T Consensus 186 -------------------------------------------------------------------------------- 185 (313)
T KOG1407|consen 186 -------------------------------------------------------------------------------- 185 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEec
Q 001318 765 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 843 (1101)
Q Consensus 765 w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 843 (1101)
..|.....|+.|+|+|+++|+|+ |..+.+||+...-|.+.+.
T Consensus 186 -------------------------------------~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 186 -------------------------------------KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred -------------------------------------ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec
Confidence 01677788899999999999999 8999999999999999999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC
Q 001318 844 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 911 (1101)
Q Consensus 844 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~ 911 (1101)
.+.-+|+.+.||. ||++||+|++|..|-|=++++|..+..++ +.++-..|+|+|...+||-++.|.
T Consensus 229 RldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 229 RLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC
Confidence 9999999999999 99999999999999999999999888877 788999999999999999888763
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=236.14 Aligned_cols=258 Identities=16% Similarity=0.287 Sum_probs=205.8
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 414 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 414 (1101)
+......+-|.+.|.++... +++ +.+|+.||.++|||... +... .+.||.++|..++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~G-k~~~-------------------~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLKG-KSIK-------------------TIVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecCC-ceEE-------------------EEecCCcceeeeE
Confidence 44455677899999999998 554 99999999999999874 4433 3889999999888
Q ss_pred EecCC---CeEEEEEcCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC-----
Q 001318 415 WSPDG---SLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----- 485 (1101)
Q Consensus 415 ~spdg---~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~----- 485 (1101)
|--.. ..+++++.|.++++|.++.++.. .....-.||...|-+++..++|. .+++|+.|.+|+||+..+
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence 86533 35999999999999999877643 22223459999999999999999 799999999999999321
Q ss_pred --------------------CceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeE
Q 001318 486 --------------------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 545 (1101)
Q Consensus 486 --------------------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 545 (1101)
+.++-++.||..+|.++.|.. ...+++++-|.+|+.||+.+++....+...
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ 300 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------ 300 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC------
Confidence 234567889999999999954 358999999999999999997766544332
Q ss_pred EEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEcCCCCCCCcCeEEEcc-CCCEEE
Q 001318 546 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNK-DGCLLA 621 (1101)
Q Consensus 546 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 621 (1101)
..+.++.++|..++|++|+.|..|++||.+++. ..+.+.+| ...|.++.|+| +..+|+
T Consensus 301 ----------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~ 362 (423)
T KOG0313|consen 301 ----------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLV 362 (423)
T ss_pred ----------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEE
Confidence 256677778888899999999999999998764 33445444 55899999999 667889
Q ss_pred EEeCCCcEEEEEecCcccccccc
Q 001318 622 VSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 622 ~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+|+.|+++++||+++.+..+..+
T Consensus 363 S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 363 SGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred EEecCCeEEEEEeccCCCcceee
Confidence 99999999999998774344333
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=245.77 Aligned_cols=261 Identities=18% Similarity=0.279 Sum_probs=213.5
Q ss_pred CCCCCcceeeccc-CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCC
Q 001318 331 PEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 409 (1101)
Q Consensus 331 ~~~~~~~~~~~~~-h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 409 (1101)
.+.+|......+. |.+.|..+.|-++... |++|+.|..|.+|++..++... ..++.|-.+.
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~ 221 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGN 221 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCC
Confidence 3344555555555 9999999999999764 9999999999999998776221 1157888899
Q ss_pred eEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE
Q 001318 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 489 (1101)
Q Consensus 410 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 489 (1101)
|+.+.|.++++++++++.|+.+++|++...+... +|.||.+.|+++.|..... .+++|+.|.+|++||+..+.|.
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhee
Confidence 9999999999999999999999999999876554 7999999999999998776 5999999999999999999998
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
+++- ....+..|+.. ...+++|-.|+.|++||.++.........++ .|+++..+.+|
T Consensus 297 kt~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g----------------- 353 (459)
T KOG0288|consen 297 KTVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDG----------------- 353 (459)
T ss_pred cccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCC-----------------
Confidence 8765 23445555542 2578999999999999999988777766654 56666655555
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC--CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 642 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 642 (1101)
..+++++.|.++.+.|+++.+....+...+. ....+.+.|||++.|+++|+.||.|+||++.++ ++..
T Consensus 354 ----~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~ 423 (459)
T KOG0288|consen 354 ----LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEK 423 (459)
T ss_pred ----eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEE
Confidence 4688889999999999999998888865432 234788999999999999999999999999988 4443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=240.32 Aligned_cols=268 Identities=18% Similarity=0.255 Sum_probs=213.0
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeee-cCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.-.|.-.|+||+++||+++ ..+++.|++|.=|++.+++.... .++--+ +.....+.+... .+|...|.+++.|+||
T Consensus 138 ~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~-i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY-IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDG 214 (479)
T ss_pred eccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc-ccccchhhhhccCCCCccc-ccccceeEEEEEcCCC
Confidence 4459999999999999997 99999999999999999986521 000000 011122222222 4899999999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++-||.+.|
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred cEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 999999999999999999988666 5899999999999987666 58999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.++.... -...+-.|+.|+++++|++.. +....+.++...+.+++|-.+. .|++|
T Consensus 290 ~~IdaL~--reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~----------------------HfvsG 344 (479)
T KOG0299|consen 290 LGIDALS--RERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE----------------------HFVSG 344 (479)
T ss_pred eeechhc--ccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc----------------------ceeec
Confidence 9987532 224555556999999999943 4445556666666666665544 49999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCC----------CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGG----------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
+.+|.|.+|++...+++.+.....+ ...|++++..|...++++|+.+|.|++|.+..+.+.+
T Consensus 345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 9999999999999998877753211 1267899999999999999999999999998885443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=219.95 Aligned_cols=235 Identities=12% Similarity=0.106 Sum_probs=197.4
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
+.+.+|+.+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||++.|+|++.+.+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 44668999999999999999 699999999999999999999884 8999999999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEe-----cCCCcEEEEeCC-------CC
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-----GDDKTIKVWDAT-------NG 486 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-----~~d~~i~iwd~~-------~~ 486 (1101)
.++|++|+.|.++++||+++|+++... .-..+|..+.|+.+|.. ++.+ +..+.|.++|++ ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 999999999999999999999988743 24678999999999993 3333 234679999998 45
Q ss_pred ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCcee-eecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 487 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 487 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
++...+..+...++.+.|.+. +++|++|..||.|..||++++.... ....|...|+.+.+++|.
T Consensus 138 ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~------------- 202 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR------------- 202 (327)
T ss_pred CceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-------------
Confidence 567777778899999998654 4799999999999999999875543 335566666666666655
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 625 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 625 (1101)
.++++++.|.+-++||..+.+.+.++.... +|++.+++|-...++.|+.
T Consensus 203 --------T~FiT~s~Dttakl~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 203 --------TYFITGSKDTTAKLVDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGGG 251 (327)
T ss_pred --------ceEEecccCccceeeeccceeeEEEeeecc---cccceecccccceEEecCC
Confidence 589999999999999999999999987543 5999999998877777764
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=219.34 Aligned_cols=278 Identities=17% Similarity=0.210 Sum_probs=226.1
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
-+.+|...|.+++|+.||..||+|+.|+++.+|+++..+.. ......+|.+.|-.++|.|.... .+++++.|++|++|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~w 92 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIW 92 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEE
Confidence 47789999999999999999999999999999999987433 33457799999999999998777 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
|+++++++.......+.+. ++| +++|.+++.++.|..|.+.|.++.+.....+.. ..+..
T Consensus 93 d~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~e~ne---------------- 152 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-FEVNE---------------- 152 (313)
T ss_pred EeccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhccc-ceeee----------------
Confidence 9999999998876666666 555 566789999999999999999876554432221 12333
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
++|+.++++++.....|.|.|.....-+++..++.|. ..+.|+.|+|+|+++|+|+.|-.+.+||+... -+.
T Consensus 153 -----~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~ 224 (313)
T KOG1407|consen 153 -----ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICE 224 (313)
T ss_pred -----eeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHh-hhh
Confidence 3444455677777778999999999999999998775 46889999999999999999999999998643 222
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
+.+.
T Consensus 225 R~is---------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 225 RCIS---------------------------------------------------------------------------- 228 (313)
T ss_pred eeec----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
T Consensus 229 -------------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 229 -------------------------------------------------------------------------------- 228 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD 868 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 868 (1101)
.++-+|+.+.||.||++||+|+ |..|-|=++++|..+..++ +.++...++|+| ...+||.++.|
T Consensus 229 -RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 229 -RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred -cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 0566788888888888888888 7888888999999988887 788899999999 88999998865
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=222.26 Aligned_cols=287 Identities=18% Similarity=0.261 Sum_probs=225.5
Q ss_pred EEEEEec--CCCeEEEEEec-----CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCC
Q 001318 349 MSMDFHP--VQQTLLLVGTN-----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 420 (1101)
Q Consensus 349 ~~~~~sp--dg~~llatg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 420 (1101)
.++.||| +++..+|+++. .|.+.|-++..++.+. +++.++ -.+.+..++||+ ...
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~--e~~s~d---------------~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ--ECQSYD---------------TEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeE--EEEeee---------------cccceeEeeecCCCcc
Confidence 5678888 45533444433 5789999987555443 233232 256899999999 466
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 500 (1101)
.+++++.||+++|||..- .-.++..++.|...|.++.|++-.++ .++++|-|++|++|+...++.+++|.||..-|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 788899999999999543 33455578999999999999998877 677779999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
...|+|... +++++++.|+++++||++.......+..|...+.++.|+.-.. +.+++|+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~ 210 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG 210 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence 999987644 6999999999999999998877777888887777777766554 6789999
Q ss_pred CCCcEEEEECCCC-ceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCC
Q 001318 581 DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 658 (1101)
Q Consensus 581 ~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1101)
.|+.|++||++.- .++..+.+| .-.|+.+.||| ....|++++.|-+++|||...+...+.....|+.-+...
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~---- 284 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL---- 284 (311)
T ss_pred CCceEEEEehhhccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc----
Confidence 9999999999875 456666555 44799999999 567899999999999999987766777766665432211
Q ss_pred CCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 659 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
+.. ..+...+++.+.|..+.+|+-
T Consensus 285 -----------------------------------Dws-~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 285 -----------------------------------DWS-LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----------------------------------ccc-cccCceeeecccccceeeecc
Confidence 111 125788999999999999973
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=261.97 Aligned_cols=272 Identities=14% Similarity=0.177 Sum_probs=205.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEe------------------------------ee-------
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL------------------------------RN------- 385 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~------------------------------~~------- 385 (1101)
.|.+.|+++.||+||+| ||+|+.|+.|+||.+...+.... ..
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 59999999999999996 99999999999999876111000 00
Q ss_pred ----eeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEc
Q 001318 386 ----FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 461 (1101)
Q Consensus 386 ----~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s 461 (1101)
..+.+..-.-.+.+...+.||.+.|..|+||.++ +|++++.|.+|++|++...++++ ...|.+-|+||+|+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFN 418 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee----EEecCCeeEEEEec
Confidence 0000000001122234588999999999999755 88999999999999999998887 33599999999999
Q ss_pred CCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCC
Q 001318 462 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR 541 (1101)
Q Consensus 462 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 541 (1101)
|-+.+ ++++|+-|+.|+||++...+.+.-...+ .-|+++||. +||+..+.|+.+|.+++|+....+....+..+
T Consensus 419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~--PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-- 492 (712)
T KOG0283|consen 419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYS--PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-- 492 (712)
T ss_pred ccCCC-cEeecccccceEEeecCcCeeEeehhhh-hhheeEEec--cCCceEEEEEeccEEEEEEccCCeEEEeeeEe--
Confidence 97776 8999999999999999888776655534 789999985 56799999999999999998875544332211
Q ss_pred ceeEEEEccCCceEEeccccCceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEE
Q 001318 542 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 620 (1101)
Q Consensus 542 ~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 620 (1101)
-.+.+.. ....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+++......-....|+.||++|
T Consensus 493 --------~~~~Kk~---~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 493 --------LHNKKKK---QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred --------eccCccc---cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence 0000000 01134444444322 35888899999999999999999999877666666788999999999
Q ss_pred EEEeCCCcEEEEEecCc
Q 001318 621 AVSTNDNGIKILATSDG 637 (1101)
Q Consensus 621 ~~~~~dg~i~iw~~~~~ 637 (1101)
+++++|..|++|+....
T Consensus 562 Vs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEeecCceEEEEeCCCC
Confidence 99999999999997543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-25 Score=236.72 Aligned_cols=510 Identities=17% Similarity=0.205 Sum_probs=333.0
Q ss_pred eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 488 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 488 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
.+..+.+|...|+.+.|++-.| .+|++|+.|..|++|.+..+ ....+... .+..|+.+..+.++
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D-~LLAT~S~D~~VKiW~lp~g-~~q~LSap--------------e~~~g~~~~~vE~l 134 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFAD-ELLATCSRDEPVKIWKLPRG-HSQKLSAP--------------EIDVGGGNVIVECL 134 (1012)
T ss_pred ccceeecccceeeccCccccch-hhhhcccCCCeeEEEecCCC-cccccCCc--------------ceeecCCceEEEEe
Confidence 4556788999999999988776 58999999999999988732 22222111 23344455578888
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccc
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 647 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 647 (1101)
.|+|...-++..+..|++++||+.+++.+..+.+|.. .|.++.|+.||.+|++.+.|..|+|||.+...+.++..++|
T Consensus 135 ~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d--~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 135 RFHPTADGILASGAHGSVYITDISTQKTAVELSGHTD--KVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred ecccCcCceEEeccCceEEEEEcccCceeecccCCch--hhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 8999888888888999999999999999998886654 79999999999999999999999999999876788887877
Q ss_pred cccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCC----CcceeeeccccCC
Q 001318 648 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN----DKSKVWKLTELSE 723 (1101)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~~w~~~~~~~ 723 (1101)
...... .+.+.-+-..|++.+.+ ..+++||......
T Consensus 213 ~~~rds----------------------------------------Rv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~ 252 (1012)
T KOG1445|consen 213 GGMRDS----------------------------------------RVLWAGNWERLISTGFTTKRIREVRAYDTRKFGA 252 (1012)
T ss_pred ccchhh----------------------------------------eeeeccchhhhhhcccchhhheeeeeeeccccCC
Confidence 654110 11111122344433333 4678888876444
Q ss_pred CccccccccCccccccceEEEEEcCCCceEEeeec-CceEEeeeccccc-------------------------------
Q 001318 724 PNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTE------------------------------- 771 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~------------------------------- 771 (1101)
...-..+. ....|.--.|.||.++|+.++. +..+..+++...+
T Consensus 253 p~~tleld-----~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~ 327 (1012)
T KOG1445|consen 253 PVHTLELD-----SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDG 327 (1012)
T ss_pred cceeEEee-----cccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcch
Confidence 33322221 2334555567888877666554 5667766654320
Q ss_pred ------------------------------------------------------------cC--------------C---
Q 001318 772 ------------------------------------------------------------RN--------------S--- 774 (1101)
Q Consensus 772 ------------------------------------------------------------~~--------------~--- 774 (1101)
.. +
T Consensus 328 EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~ 407 (1012)
T KOG1445|consen 328 EVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPK 407 (1012)
T ss_pred hhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcc
Confidence 00 0
Q ss_pred -------------------------C--Ccee--eeecC-----------------------------------------
Q 001318 775 -------------------------S--GKAT--ASVAP----------------------------------------- 784 (1101)
Q Consensus 775 -------------------------~--~~~~--~~~~~----------------------------------------- 784 (1101)
. .... ....+
T Consensus 408 ~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~ 487 (1012)
T KOG1445|consen 408 VAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTIS 487 (1012)
T ss_pred cccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccC
Confidence 0 0000 00000
Q ss_pred ---------------------ccccCCCccccc------------------------------------cccC-CCCCCC
Q 001318 785 ---------------------QLWQPPSGIMMT------------------------------------NDVT-DSNPEE 806 (1101)
Q Consensus 785 ---------------------~lw~~~~g~~~~------------------------------------~~~~-~~~~~~ 806 (1101)
.+..+.-|+.+. .... ..+|.+
T Consensus 488 ~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks 567 (1012)
T KOG1445|consen 488 PEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKS 567 (1012)
T ss_pred CCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccch
Confidence 000000000000 0000 000110
Q ss_pred -------------CeeEEEEecCCCEEEE---EeCCeEEEEECCCCcee-e-EecC--CCCCeEEEEEecCCCcEEEEEe
Q 001318 807 -------------AVPCFALSKNDSYVMS---ASGGKISLFNMMTFKTM-A-TFMP--PPPAATFLAFHPQDNNIIAIGM 866 (1101)
Q Consensus 807 -------------~i~~~~~s~dg~~la~---~sdg~i~vwd~~~~~~~-~-~~~~--~~~~i~~l~~sp~d~~~lasg~ 866 (1101)
+-.+=-|..+.+++|+ |+.|.|-||++.....+ - .+.+ ....|+.+.|.|.|...||+++
T Consensus 568 ~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ 647 (1012)
T KOG1445|consen 568 AHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT 647 (1012)
T ss_pred hhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc
Confidence 0011123345556665 33689999999753222 1 1211 2456999999999999999999
Q ss_pred ccCeEEEEEeecce-------EeeeecCcccCeeEEEEcCC-CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCC
Q 001318 867 DDSSIQIYNVRVDE-------VKSKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 938 (1101)
Q Consensus 867 ~dg~v~vwd~~~~~-------~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
+||.|++|.+..+. .-..+.+|...|+++.|+|- ...|++++.|.+|++||+.++.. ...+.+|..
T Consensus 648 ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHtd- 721 (1012)
T KOG1445|consen 648 DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-----YSRLVGHTD- 721 (1012)
T ss_pred cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----hheeccCcC-
Confidence 99999999997643 33567889999999999985 57899999999999999998653 444567764
Q ss_pred CCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC----eEEEEEcCC
Q 001318 939 AQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAAN 1013 (1101)
Q Consensus 939 ~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg----~v~vwd~~~ 1013 (1101)
.|..++|||||+.+|+ +.|++|++|+..+++..-.-....-...-..+.|.-||+++++.+.|. .|.+||..+
T Consensus 722 --qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 722 --QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred --ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 8999999999999999 899999999998876532211101123345677888999988877665 489999876
Q ss_pred cee--eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccccCCCCC
Q 001318 1014 LKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPV 1077 (1101)
Q Consensus 1014 ~~~--~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~~~~~~~ 1077 (1101)
-.. +.+.. .... -.++--.|.++.+-++++|-.|..|+++.+......+....+|
T Consensus 800 l~~~pl~t~~--lDva-------ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f 856 (1012)
T KOG1445|consen 800 LDLRPLYTQV--LDVA-------PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPF 856 (1012)
T ss_pred ccCCcceeee--eccc-------CccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccc
Confidence 442 22211 0000 1122334556455678999999999999998877555544444
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=228.67 Aligned_cols=247 Identities=13% Similarity=0.213 Sum_probs=201.2
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
|...|+.+.|+|....|++++.|+++++||+........ ++.......|.++.|+|.
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA-----------------------~K~~qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA-----------------------FKVFQDTEPVRSISFHPS 227 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH-----------------------HHHhhccceeeeEeecCC
Confidence 889999999999999999999999999999854321100 000114678999999999
Q ss_pred CCEEEEEeC-CeEEEEECCCCceeeEe---cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-cCccc-
Q 001318 817 DSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSK- 890 (1101)
Q Consensus 817 g~~la~~sd-g~i~vwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~- 890 (1101)
|.+|++|.| .++++||+.+.++...- .+|.+.|+++.+++ .+++.++|+.||.|++||--+++|+.++ .+|.+
T Consensus 228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence 999999996 68999999998886553 45788999999999 8999999999999999999999999888 45654
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcC
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT 968 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~ 968 (1101)
.|.+..|..+|+++++.|.|.++++|++.++.....-.-.-..|.+ .--+...|.....+++.- ..+.++-||..
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq---~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ---KHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch---hhhhhhhhcCccceEEccccccCceeecccc
Confidence 6899999999999999999999999999997643322111111211 123456788888887773 45689999999
Q ss_pred CceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001318 969 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 969 ~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
++..+..+.. +|.+.+..+.-||.+.-+++++.|..+++|--
T Consensus 384 tadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 384 TADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred chhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 9988877765 89999999999999999999999999999964
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=265.10 Aligned_cols=304 Identities=18% Similarity=0.250 Sum_probs=240.1
Q ss_pred cccceEEEEEcCCCceEEeee--cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 737 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
+...|.++..+|+|..+++++ .|+.++||+...-.. ....++..-...+ .....|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l---~~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHL---CTMDDHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhh---eeeccccCceeEEEEC
Confidence 456689999999999999999 789999998743210 0111222111111 1112389999999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCC------------------CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 815 KNDSYVMSAS-GGKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
+||++||+|+ |+.|.||+... ++++..+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 67899999762 236677899999999999999 999999999999999999
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
..+.+++.++.+|.+.|..+.|.|-|++|||-+.|++|+||++......+ .+..+.++.........+.|||||.+|+
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCeec
Confidence 99999999999999999999999999999999999999999976643222 2222223333334678999999999999
Q ss_pred E--EeC---CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC-----CCC------------EEEEEEcCCeEEEEEcCC
Q 001318 956 V--VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSC-----DSQ------------LVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 956 ~--~~d---~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp-----dg~------------~l~s~s~dg~v~vwd~~~ 1013 (1101)
+ +.+ ..+.|.+-.+-+.-..+. ||.+++.+++|+| ..+ .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 8 333 368888888777766666 8999999999998 111 578999999999999988
Q ss_pred ceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1014 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
.+++..+. .+. + -..+.++|+| ||-.|.++|.||+|.+..++..+
T Consensus 314 ~RPl~vi~---~lf----~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIH---NLF----N--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhh---hhh----c--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 87775443 111 1 2345999999 78999999999999999998876
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=259.89 Aligned_cols=243 Identities=19% Similarity=0.334 Sum_probs=212.8
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.+...+.|..|+ ++. +.+|+.|.+|++||..++..+.. .+.||.+.|++++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~~--~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DGF--FKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cCe--EEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 467889999999 443 99999999999999999988763 388999999999999989999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v 502 (1101)
++|+.|.++++||..+|++.. ++.+|.+.|.++...+. ++++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999887 68899999999998643 68899999999999999999999999999999999
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
..+ +.++++|+.|++|++||+.+.+++..+.+|...|+++.+... +.+++|+.|
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~----------------------~~~~Sgs~D 391 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE----------------------NRLLSGSLD 391 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc----------------------ceEEeeeec
Confidence 864 469999999999999999999999999999999998876543 359999999
Q ss_pred CcEEEEECCCC-ceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccc
Q 001318 583 FSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 583 g~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
++|++||+++. +++.++.+|.. .+.+ +...+++|++++.|++|++||..++ ++.+.+
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~--~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~ 449 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTS--LVSS--LLLRDNFLVSSSADGTIKLWDAEEG-ECLRTL 449 (537)
T ss_pred cceEeecCCchhhhhhhhcCCcc--cccc--cccccceeEeccccccEEEeecccC-ceeeee
Confidence 99999999999 99999987765 3433 3446789999999999999998887 444443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-27 Score=257.92 Aligned_cols=273 Identities=15% Similarity=0.241 Sum_probs=213.5
Q ss_pred ccccceEEEEEcCCCceEEeeecCceEEeeecccccc---------------CCCCc---------eee-----------
Q 001318 736 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER---------------NSSGK---------ATA----------- 780 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~---------------~~~~~---------~~~----------- 780 (1101)
.|.+.|.++.||+||++|+++|.|+.|+||.+..... ...+. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876210 00000 000
Q ss_pred eecCccccCCCcc---ccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEec
Q 001318 781 SVAPQLWQPPSGI---MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP 856 (1101)
Q Consensus 781 ~~~~~lw~~~~g~---~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 856 (1101)
... .+.+..... .....+ .+|...|..+.||.++ +|++++ |.+|+||++...+|++.|. |..-|+|++|+|
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef--~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEF--KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred Ccc-ccCCCccccccccchhhh--hccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 000 011111110 011122 3599999999999876 666777 9999999999999999998 999999999999
Q ss_pred CCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCC
Q 001318 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 936 (1101)
Q Consensus 857 ~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 936 (1101)
.|.+|+++|+-||.||||++...+.+.-.+.+ .-|++++|+|||++.+.|+.+|.+++|+....+......+....+..
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999999887765544444 78999999999999999999999999999987766655555555554
Q ss_pred CCCCCCeEEEEcCCC--cEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 937 PTAQSDTRVQFHQDQ--IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg--~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
.....|+.+.|.|.. +.|+++.|.+|+|||..+...+..+..-.....-....|+.||++|+++++|..|+||+....
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 444579999998754 377789999999999988888877774333455677899999999999999999999998543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=240.36 Aligned_cols=286 Identities=19% Similarity=0.319 Sum_probs=234.3
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.++|+.+.|.++++ .+++.+.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 478899999999999999999999999999999998876 334447888899999999999999 78999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
++.+.+...+|.||++.|+++.|.... ..+++|+.|.+|+.||+....+..+.-. ...+..+..+
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~------------ 311 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS------------ 311 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec------------
Confidence 999999999999999999999885443 3499999999999999988555443221 1222222221
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
...+++|-.|+.|++||+++..+......++ .|+++..+++|..|.+.+.|.++.+.|+.+. +..
T Consensus 312 -----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~ 376 (459)
T KOG0288|consen 312 -----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIR 376 (459)
T ss_pred -----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEE
Confidence 2347788899999999999999999988665 4999999999999999999999999998765 221
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..+
T Consensus 377 ~~~----------------------------------------------------------------------------- 379 (459)
T KOG0288|consen 377 QTF----------------------------------------------------------------------------- 379 (459)
T ss_pred EEe-----------------------------------------------------------------------------
Confidence 111
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
+..|. .
T Consensus 380 -------------------------sA~g~-----------------------------------------------k-- 385 (459)
T KOG0288|consen 380 -------------------------SAEGF-----------------------------------------------K-- 385 (459)
T ss_pred -------------------------ecccc-----------------------------------------------c--
Confidence 10110 0
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCC--CeEEEEEecCCCcEEEEEeccCeEEEE
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY 874 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~v~vw 874 (1101)
.....+.+.|||++.|+++|+ ||.|+||++.++++...+..... .|++++|+| .|..|++++.++.+.+|
T Consensus 386 --~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 386 --CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred --cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 122367789999999999999 99999999999999888876544 599999999 89999999999999999
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=220.50 Aligned_cols=253 Identities=13% Similarity=0.255 Sum_probs=212.0
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.....+.-.+.+..++|++.....+++++.||.++|||...... +...++.|..+|.++.|+
T Consensus 52 ~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 52 QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWN 113 (311)
T ss_pred EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccc
Confidence 34445557789999999999888899999999999999543321 122588999999999999
Q ss_pred c-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 417 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 417 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
+ +++.++++|.|++|++|+...+..+. ++.||...|...+|+|.... +++++|.|+++++||++.......+..|
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah 189 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAH 189 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEec
Confidence 9 77788889999999999998877665 79999999999999998777 8999999999999999875555558899
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCC
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 574 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1101)
...+.++.|+. .+...+++|+.|+.|+.||++..+ ++..+.+|+-.|..+.|||... .
T Consensus 190 ~~Eil~cdw~k-y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~ 248 (311)
T KOG0277|consen 190 NSEILCCDWSK-YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------S 248 (311)
T ss_pred cceeEeecccc-cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------h
Confidence 99999999975 455799999999999999999854 4567888888899999888765 5
Q ss_pred EEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEe
Q 001318 575 RFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 634 (1101)
.|++++.|-+++|||...+ ..+.+...|.. .+..+.|++ ++.++|+.+.|+.++||+.
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccceeeecc
Confidence 6899999999999999854 34555555544 688899998 7889999999999999984
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=236.73 Aligned_cols=247 Identities=21% Similarity=0.260 Sum_probs=197.8
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
...+.|++++|||...+=+|+.+. -.|.||+..+..... .+......|+++.|-.||++|
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Ll 83 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLL 83 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEE
Confidence 356789999999976554444332 689999988776554 244556789999999999999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v 502 (1101)
|+|...|.|+|+|+++...++ .+.+|..+|..+.|+|+++. .+++|++|+.+++||+.+...+..+.+|++.|.+.
T Consensus 84 aaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 84 AAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred EccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 999999999999977644344 58899999999999999887 89999999999999999999877999999999999
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
+|++. ++++++||+.||.|++||++.......--.|+.+|..+.+-|.|. .+++++ .
T Consensus 160 ~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs---------------------~iasAg-G 216 (487)
T KOG0310|consen 160 DISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS---------------------LIASAG-G 216 (487)
T ss_pred ccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC---------------------EEEEcC-C
Confidence 99764 448999999999999999998754443344566666666666654 566665 4
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..|++||+.+|........ .|...|+|+.+..++..|++++-|+.+++||+.+-
T Consensus 217 n~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 5899999986654433332 23457999999999999999999999999996543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=216.52 Aligned_cols=289 Identities=15% Similarity=0.187 Sum_probs=228.5
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
....|.++.|+.+|..+++++.|..+++||... |..+... .. +...+..++|...
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------g~~~~ti-~s--kkyG~~~~~Fth~ 67 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------GKQVKTI-NS--KKYGVDLACFTHH 67 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------CceeeEe-ec--ccccccEEEEecC
Confidence 457899999999999999999999999998743 2222111 11 4556788888877
Q ss_pred CCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCee
Q 001318 817 DSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 893 (1101)
Q Consensus 817 g~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 893 (1101)
...+..++ |.+|+..++.+.+.++.|.||...|+.++.+| .+..+++++.|++|++||++..++...+.....+
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-- 144 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence 77666665 68899999999999999999999999999999 7789999999999999999988887777544443
Q ss_pred EEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCcee
Q 001318 894 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 972 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~ 972 (1101)
.++|.|.|-++|++.....|++||++.-.+..........+. ......+.|||||+++..+ ..+.+.+.|.-+|..
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~---~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND---EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC---ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 479999999999998888999999988655444444443322 2478999999999999985 778899999999998
Q ss_pred eeeccCCCCCC-CeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001318 973 VKQWVPRESSA-PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1051 (1101)
Q Consensus 973 ~~~~~~~~h~~-~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~ 1051 (1101)
+.++....... --.+.+|+||++++++|+.||+|.+|++++|+.+.+++. +. ...+. .+.|.| ++..
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~----~~---~~~~~--~~~fnP---~~~m 289 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG----PN---GGPVS--CVRFNP---RYAM 289 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC----CC---CCCcc--ccccCC---ceee
Confidence 88877433222 236788999999999999999999999999999998882 21 22244 678988 4555
Q ss_pred EEecCCcEEEEeccCCC
Q 001318 1052 LGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1052 s~~~dg~v~vW~~~~~~ 1068 (1101)
-++.+..+.+|-....+
T Consensus 290 f~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 290 FVSASSNLVFWLPDEDA 306 (311)
T ss_pred eeecCceEEEEeccccc
Confidence 55567889999887654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=260.87 Aligned_cols=280 Identities=20% Similarity=0.307 Sum_probs=225.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEe--cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
++..|.++..+|||.. +|||+ .||.++||+.+.--... .-++.. .+........|.+.|.|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 4567999999999996 99999 89999999975421100 000100 12222346789999999999999999
Q ss_pred EEEEEcCCeEEEEEccC----------C-----ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC
Q 001318 422 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 486 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~----------~-----~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 486 (1101)
||+|++|+.|.||.... | +..+....+.+|...|..++|+|++. +|++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999872 1 11235567899999999999999999 8999999999999999999
Q ss_pred ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCC------CCceeEEEEccCCc-------
Q 001318 487 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGT------- 553 (1101)
Q Consensus 487 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~------- 553 (1101)
+.+.++.+|.+.|..+.| ++-|++|++-+.|++|++|+..+-+....+..+ ...+..+.|+|||.
T Consensus 162 ~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 999999999999999998 566799999999999999997775555555443 33678899999998
Q ss_pred -------------------eEEeccccCceeEEEEcCC-------------CC----EEEEEeCCCcEEEEECCCCceeE
Q 001318 554 -------------------RTYQGFRKRSLGVVQFDTT-------------KN----RFLAAGDDFSIKFWDMDSVQLLT 597 (1101)
Q Consensus 554 -------------------~~~~~~~~~~~~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~ 597 (1101)
..+.||.. ++.++.|+|. .+ .+++|+.|++|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 33456666 8899999872 11 57779999999999998888776
Q ss_pred EEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 598 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 598 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.+..-. ...|.+++|+|||..|++++.||+|.++..+..
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 654222 236899999999999999999999999988754
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=251.72 Aligned_cols=265 Identities=15% Similarity=0.205 Sum_probs=202.6
Q ss_pred ccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec-C
Q 001318 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-N 816 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~-d 816 (1101)
-..|....+++++..+++++.+.....|+...+. ..++..+.|+.........+|.+.|.+++|+| +
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 3455566677787778888888888888753221 11233344443321111234999999999999 8
Q ss_pred CCEEEEEe-CCeEEEEECCCC-------ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCc
Q 001318 817 DSYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 888 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 888 (1101)
+++|++++ |++|++||+.++ ..+..+.+|...|.+++|+|.++++|++|+.|+.|+|||+.+++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 89999999 999999999764 3467789999999999999944579999999999999999999999999999
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E----eCCeEE
Q 001318 889 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLA 963 (1101)
Q Consensus 889 ~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~----~d~~v~ 963 (1101)
...|.+++|+|+|.+|++++.|++|++||+.+++. +....+|.. .....+.|.+++..+++ + .|+.|+
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIM 240 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence 99999999999999999999999999999998653 222333432 23456788998888776 3 368999
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+||+.+...........+...+....|++|+.+|++++ .|+.|++||+.+++++....
T Consensus 241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 99998765322221112345666778999999999887 59999999999998876544
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=254.22 Aligned_cols=287 Identities=18% Similarity=0.271 Sum_probs=238.4
Q ss_pred CCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 484 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 484 (1101)
.|...|.+..|. +.++++++.|++|++||..++..+.. .+.||.+.|.+++|..-+. ++++|+.|.+++|||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 467789999998 77899999999999999999876652 3889999999999987555 79999999999999999
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
+|.+.+++.+|...|.++... ..++++|+.|.+|++|++.++.....+.+|...|.++.+.
T Consensus 280 sg~C~~~l~gh~stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--------------- 340 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--------------- 340 (537)
T ss_pred CCcEEEEecCCCceEEEEEcc----CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---------------
Confidence 999999999999999988742 2578899999999999999988888888888888877765
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccc
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+.++++|+.|++|++||+.+++++..+.+|.+ .|.++.+... .++++|+.|++|++||+.+..+++..+
T Consensus 341 --------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 341 --------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred --------CCEEEEEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 25799999999999999999999999997654 8989877665 899999999999999998774344333
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCC
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 724 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 724 (1101)
.+|..
T Consensus 410 ~~h~~--------------------------------------------------------------------------- 414 (537)
T KOG0274|consen 410 QGHTS--------------------------------------------------------------------------- 414 (537)
T ss_pred cCCcc---------------------------------------------------------------------------
Confidence 32221
Q ss_pred ccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCC
Q 001318 725 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 804 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~ 804 (1101)
T Consensus 415 -------------------------------------------------------------------------------- 414 (537)
T KOG0274|consen 415 -------------------------------------------------------------------------------- 414 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
-+..+ ...+++|++++ |++|++||..++++++++.+ |...|.++++. ...+++++.||.+++||+.++++.
T Consensus 415 --~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 415 --LVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred --ccccc--ccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchh
Confidence 11111 12445778887 99999999999999999998 67888888876 247888999999999999999988
Q ss_pred eeecCcc
Q 001318 883 SKLKGHS 889 (1101)
Q Consensus 883 ~~l~~h~ 889 (1101)
+.+-.+.
T Consensus 488 ~~l~~~~ 494 (537)
T KOG0274|consen 488 RTLLSTD 494 (537)
T ss_pred hhhhhcc
Confidence 8774443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=216.63 Aligned_cols=247 Identities=15% Similarity=0.258 Sum_probs=206.8
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec--cCeEEEEEeecce
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDE 880 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~ 880 (1101)
....|.++.|+++|.++++++ |..++|||..+++.++++..+.-.+..++|.. ....+..++. |.+|+.-++.+.+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCc
Confidence 467899999999999999988 78999999999999999998888899999988 5555555655 8899999999999
Q ss_pred EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC
Q 001318 881 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 960 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 960 (1101)
.++.+.||...|++++.+|-+..++|++.|++|++||++..+.+... ... .-..++|+|+|-++|++.++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--~~~--------~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--NLS--------GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--ecC--------CCcceeECCCCcEEEEecCC
Confidence 99999999999999999999999999999999999999975433222 111 22568999999999996444
Q ss_pred -eEEEEEcCCc--eeeeeccCC-CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCcc
Q 001318 961 -QLAIFETTKL--ECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1036 (1101)
Q Consensus 961 -~v~vwd~~~~--~~~~~~~~~-~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1036 (1101)
.|++||++.. ....++... +-....+.|.|||||++|+.+...+.+++.|.-+|..+..+. ++.+..-.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-------~~~~~~~~ 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-------GYPNAGNL 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-------eccCCCCc
Confidence 9999999764 223333332 346789999999999999999999999999999999988877 22233344
Q ss_pred ceEEEEeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 1037 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1037 ~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
++..+|+| |++++++|+.||+|.+|++.+++.
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcE
Confidence 57899999 799999999999999999999983
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-27 Score=247.45 Aligned_cols=253 Identities=19% Similarity=0.258 Sum_probs=206.8
Q ss_pred CCCCcE---EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 344 QGSSPM---SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 344 h~~~v~---~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
|...|. .+..++.+...|.||+.||.|++|++........ .++ ...+..|.+.|..++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~~-~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TPY-IASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cch-hhhhhhhHhHHhhHHhhcCCC
Confidence 344444 4555544443599999999999999876543211 111 124788999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEE-cCCCCeEEEEEecCCCcEEEEeCCCC--ceEEE------
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNG--AKQYI------ 491 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~-s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~~~------ 491 (1101)
.|+++|.|-+|++|+...+. .....++..|.+.|.|++. .++.. ++++||-|+.|.+||+.+| +.+.+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998774 2233468889999999999 66665 8999999999999999988 23332
Q ss_pred --ec-CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 492 --FE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 492 --~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
+. |+...|++++. .++|..+++|+..+.+++||.++.+.+..+.+|...|..+..+.||+
T Consensus 164 ~sl~sG~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--------------- 226 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--------------- 226 (735)
T ss_pred ccCCCCCccceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------
Confidence 23 78889999986 45567999999999999999999999988888888777777666664
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.+++++.||+|++||+...+++.++..|.. .|.++..+|+-.++++|+.||.|..=|+.+.
T Consensus 227 ------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 227 ------RLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ------eEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 799999999999999999999999987766 5999999999999999999999999888775
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-26 Score=217.78 Aligned_cols=248 Identities=18% Similarity=0.217 Sum_probs=196.8
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
..+.|.+++|||....++++||-||+||+|+++...... .+....|.++|.+++|+.||..++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-----------------~ka~~~~~~PvL~v~WsddgskVf 88 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-----------------PKAQQSHDGPVLDVCWSDDGSKVF 88 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc-----------------chhhhccCCCeEEEEEccCCceEE
Confidence 568899999999777788899999999999998742221 124678999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~ 503 (1101)
+|+.|+.+++||+.+++... +..|.++|.++.|-+...+..|+|||.|++|+.||.+...++.++. -.+.++++.
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~~~----v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D 163 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQVSQ----VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD 163 (347)
T ss_pred eeccCCceEEEEccCCCeee----eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence 99999999999999996443 6789999999999887665589999999999999999999998887 566788775
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 583 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 583 (1101)
.- ..+++.+..++.|.+|+++++....... .. .-+..+++++...+....+.|+-+|
T Consensus 164 v~----~pm~vVata~r~i~vynL~n~~te~k~~--~S-----------------pLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 164 VL----YPMAVVATAERHIAVYNLENPPTEFKRI--ES-----------------PLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred cc----CceeEEEecCCcEEEEEcCCCcchhhhh--cC-----------------cccceeeEEEEEecCCceEeeeecc
Confidence 42 1478888899999999997654332211 10 0112556666666666789999999
Q ss_pred cEEEEECCCC--ceeEEEcCCCC-------CCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 584 SIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 584 ~i~iwd~~~~--~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
.+-+..++.+ +.-.+++.|.. .-.|++++|+|.-..|++.+.||++.+||-..
T Consensus 221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 9999999886 44445555542 23578899999888999999999999999643
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=234.82 Aligned_cols=297 Identities=16% Similarity=0.231 Sum_probs=226.0
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
.+|...|.++++.|.|.++++|+-|..|++||++.-..+. +..+..... ....|.++.|+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------~~fr~l~P~--E~h~i~sl~ys 223 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------------RSFRQLQPC--ETHQINSLQYS 223 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------------hhhhccCcc--cccccceeeec
Confidence 4478899999999999999999999999999986432110 001111111 45679999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCceeeE------------ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce-
Q 001318 815 KNDSYVMSAS-GGKISLFNMMTFKTMAT------------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE- 880 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~~~~~~~------------~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~- 880 (1101)
+.|..|++.+ ....+|+|....+.... -+||...++|.+|+|.....+.+++.||++||||+..-+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888887 68899999765444332 357888999999999878899999999999999997643
Q ss_pred Eeeee-----cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 881 VKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 881 ~~~~l-----~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
.+..+ .+..-+++.++|++||+++|.|..||.|.+|+........ .+.+...|.. ...|+++.||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence 22222 2344578999999999999999999999999985533322 2333333332 24799999999999999
Q ss_pred E-EeCCeEEEEEcCCce-eeeeccCCCCCCCeeEEEEcCCCCEEEEEEc------CCeEEEEEcCCceeeeecCCCcccC
Q 001318 956 V-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVFSAANLKLRCRINPSAYLP 1027 (1101)
Q Consensus 956 ~-~~d~~v~vwd~~~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~ 1027 (1101)
+ +.|+++++||+...+ ++..+..-....+-+.++||||.++|++|+. -|++++||..+.+.+.++.+.
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 9 999999999998754 4444432223556788999999999999873 578999999999999988733
Q ss_pred CCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1028 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1028 ~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
+ ...+.+.|+| .=+.|.+|+.||+++|+--+
T Consensus 457 -~-----aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 457 -T-----ASVVRCLWHP-KLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred -C-----ceEEEEeecc-hhhheeeecCCCceEEEECc
Confidence 1 3344799999 45778888889999986543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=214.80 Aligned_cols=305 Identities=17% Similarity=0.238 Sum_probs=223.7
Q ss_pred CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 603 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 603 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
+|...|++++|+.||++|++.+.|++|++|++.+-.. +.|...
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-----~eHr~~-------------------------------- 126 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-----KEHRCI-------------------------------- 126 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh-----hhhhHh--------------------------------
Confidence 3445799999999999999999999999999876311 111110
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeec-Cce
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAI 761 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~ 761 (1101)
...+ ..+..+.++|+||-+.++.... ...
T Consensus 127 ----------------------------------------------R~nv----e~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 127 ----------------------------------------------RQNV----EYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred ----------------------------------------------hccc----cCCCceEEEECCCcceEEEEEccCCE
Confidence 0000 1235577899999876665554 578
Q ss_pred EEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceee
Q 001318 762 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA 840 (1101)
Q Consensus 762 i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~ 840 (1101)
+++|.+...+- |...-. ..-||-. .. . ..|.-.+..+-...++++|++++ |.+|.+|+++ |+.+.
T Consensus 157 l~vyk~~K~~d---G~~~~~--~v~~D~~--~f----~--~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~ 222 (420)
T KOG2096|consen 157 LCVYKLVKKTD---GSGSHH--FVHIDNL--EF----E--RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ 222 (420)
T ss_pred EEEEEeeeccc---CCCCcc--ccccccc--cc----c--hhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee
Confidence 89988754321 111110 0112200 00 0 12667788888889999999999 8899999998 88888
Q ss_pred EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec---c-----eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCc
Q 001318 841 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---D-----EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 912 (1101)
Q Consensus 841 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~-----~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~ 912 (1101)
.+......-...+.|| +|++||+++-.--|+||.+-- | ..+..++||...|..++||++.+.++|++.||+
T Consensus 223 ~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~ 301 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK 301 (420)
T ss_pred eeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc
Confidence 8887777778899999 999999999888999998742 2 234567999999999999999999999999999
Q ss_pred eEEEeCCCcccccc--eeeecCCCC-CCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEE
Q 001318 913 LCVWSSDGWEKQKN--RFLQIPTGR-TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT 989 (1101)
Q Consensus 913 v~iwd~~~~~~~~~--~~~~~~~~~-~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~ 989 (1101)
++|||++-.-.... ..++..... ....+....+.++|.|+.||++....+++|..++++....+. +.|...|++++
T Consensus 302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~Is~is 380 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTTISSIS 380 (420)
T ss_pred EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCceeeEE
Confidence 99999864321111 112211100 011134458999999999999999999999999998877765 47899999999
Q ss_pred EcCCCCEEEEEEcCCeEEEEEc
Q 001318 990 FSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 990 ~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
|++||+++++++ |..++|+.-
T Consensus 381 ~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 381 YSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ecCCCcEEeeec-ceeeeeecC
Confidence 999999999986 788888763
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-25 Score=248.70 Aligned_cols=263 Identities=13% Similarity=0.129 Sum_probs=198.3
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 422 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 422 (1101)
+-..|....+++|+.. +++++.+..+..|+...+..+.. .-..+........+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4467778888899775 77778888888998766543211 1011111111235789999999999999 89999
Q ss_pred EEEEcCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 423 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1234468899999999999998644 7999999999999999999999999999999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|.+++|++ ++.+|++++.|++|++||++++.....+..|... ....+.|.+++..+++
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~--------------------~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA--------------------KSQRCLWAKRKDLIIT 228 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC--------------------cceEEEEcCCCCeEEE
Confidence 99999964 5689999999999999999987766655555432 1222334455556666
Q ss_pred Ee----CCCcEEEEECCCCc-eeEEEcCCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCc
Q 001318 579 AG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 637 (1101)
Q Consensus 579 ~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 637 (1101)
++ .|+.|++||+++.. ++.....+ ....+....|++++++|++++ .|+.|++||+.++
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 54 47999999998754 33333322 222355567899999999887 5999999999887
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=216.73 Aligned_cols=248 Identities=16% Similarity=0.320 Sum_probs=212.2
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
..+|++.|+.++-..... ++.+++.|.+.+||.++++.++.. +.||.+.|.++.|++.+.
T Consensus 144 ~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikfh~s~~ 203 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKFHNSGL 203 (481)
T ss_pred hcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEeccccc
Confidence 446999999999887776 799999999999999999999984 899999999999999999
Q ss_pred eEEEEEcCCeEEEEEc------cC------------------------------Ccee-eeeeeeccccCCeeEEEEcCC
Q 001318 421 LFGVAYSRHIVQIYSY------HG------------------------------GDEV-RQHLEIDAHVGGVNDIAFSHP 463 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~------~~------------------------------~~~~-~~~~~l~~h~~~V~~~~~s~d 463 (1101)
++++++.|++..||.. .. +..+ .+...|.+|.+.|.++.|...
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence 9999999999999961 11 0011 134568899999999999999
Q ss_pred CCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC-CceeeecCCCCc
Q 001318 464 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRW 542 (1101)
Q Consensus 464 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~ 542 (1101)
|+ -+++++.|.+..+||+++|+.+..+.||....+.++-++. .+++++.+.|.+.++||++.. ..+..|.+|...
T Consensus 284 g~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 284 GQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred cc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 99 5899999999999999999999999999999998887654 478999999999999999853 334578888888
Q ss_pred eeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCCcCeEEEccCCCEEE
Q 001318 543 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLA 621 (1101)
Q Consensus 543 v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~ 621 (1101)
|++..|..+.+ +++|+.|.+|++||+++.+ ++.++.... .++.++.+..+..++
T Consensus 360 VTS~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 360 VTSVVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPIIA 414 (481)
T ss_pred eeEEEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceEE
Confidence 88888887775 9999999999999998754 566666443 488899999999999
Q ss_pred EEeCCCcEEEEEecCc
Q 001318 622 VSTNDNGIKILATSDG 637 (1101)
Q Consensus 622 ~~~~dg~i~iw~~~~~ 637 (1101)
.--++..|++||+...
T Consensus 415 iPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 415 IPHDNRQVRLFDLNGN 430 (481)
T ss_pred eccCCceEEEEecCCC
Confidence 9999999999998654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=211.83 Aligned_cols=314 Identities=16% Similarity=0.211 Sum_probs=213.0
Q ss_pred ccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCc-----eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC
Q 001318 401 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 475 (1101)
Q Consensus 401 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d 475 (1101)
.++++|.+.|++++||.||++||+++.|++|+||+++... +++... .-+.-+.++|+||-+. +++++-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~dhpT~V~FapDc~s-~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYDHPTRVVFAPDCKS-VVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCCCceEEEECCCcce-EEEEEccC
Confidence 3699999999999999999999999999999999998632 122111 1234678999999886 56666667
Q ss_pred CcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceE
Q 001318 476 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 555 (1101)
.++++|.+...+. | ..+...+- ||--.-. ..|...+..
T Consensus 155 ~~l~vyk~~K~~d-----G-~~~~~~v~---------------------~D~~~f~-----~kh~v~~i~---------- 192 (420)
T KOG2096|consen 155 NKLCVYKLVKKTD-----G-SGSHHFVH---------------------IDNLEFE-----RKHQVDIIN---------- 192 (420)
T ss_pred CEEEEEEeeeccc-----C-CCCccccc---------------------ccccccc-----hhcccceEE----------
Confidence 7788887543221 0 00111111 1100000 000111111
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
+-+..++.++++++.|..|.+|+++ |+.+..+..... .-+..+.||+|+++++++..-.|++|.+-
T Consensus 193 -----------iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n~~aavSP~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 193 -----------IGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SNYDAAVSPDGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred -----------EeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cccceeeCCCCcEEEEecCCCCceEEEEE
Confidence 1222233578889999999999997 888888764432 35668999999999999999999999763
Q ss_pred CccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCccee
Q 001318 636 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 715 (1101)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 715 (1101)
-++ .|.-. ...++
T Consensus 259 f~k------dG~fq-------------------------------------------------------------ev~rv 271 (420)
T KOG2096|consen 259 FTK------DGTFQ-------------------------------------------------------------EVKRV 271 (420)
T ss_pred ecc------Ccchh-------------------------------------------------------------hhhhh
Confidence 221 00000 11122
Q ss_pred eeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeecccc-ccCCCCceeeeecCccccCCCccc
Q 001318 716 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT-ERNSSGKATASVAPQLWQPPSGIM 794 (1101)
Q Consensus 716 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~lw~~~~g~~ 794 (1101)
+.+ .+|...|..++|+++.+++++.+.||.++|||.+-. ....+.+.+.. |.
T Consensus 272 f~L----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~----------g~- 324 (420)
T KOG2096|consen 272 FSL----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE----------GS- 324 (420)
T ss_pred hee----------------ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhc----------CC-
Confidence 222 349999999999999999999999999999998532 11111111111 11
Q ss_pred cccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEec-CCCCCeEEEEEecCCCcEEEEEeccCeEEE
Q 001318 795 MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQI 873 (1101)
Q Consensus 795 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~v 873 (1101)
..+. ...+....++++|.|+.||......+++|..++++...+++ .|...|.+++|++ +|+++|+++ |..+++
T Consensus 325 --~pl~--aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 325 --APLH--AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRV 398 (420)
T ss_pred --cchh--hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeee
Confidence 0111 13344558999999999999999999999999988776664 5788999999999 999999886 678888
Q ss_pred EE
Q 001318 874 YN 875 (1101)
Q Consensus 874 wd 875 (1101)
+.
T Consensus 399 ~~ 400 (420)
T KOG2096|consen 399 IR 400 (420)
T ss_pred ec
Confidence 75
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=242.70 Aligned_cols=373 Identities=16% Similarity=0.189 Sum_probs=270.0
Q ss_pred CCCCeE---EEEEec-CCCeEEEEEcCCeEEEEEccCCcee---eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 406 PGVSVN---RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 406 h~~~V~---~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
|...|. .+..+. .++||.+||.||.|++|++...... .....++.|.+.|+.++...+++ .|+++|.|.+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence 444444 444444 7788999999999999998754321 12346888999999999999998 69999999999
Q ss_pred EEEeCCCC--ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEE
Q 001318 479 KVWDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 479 ~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
++|+...+ -++.++..|.+.|.|+++. ..+..++++|+.|+.|.+||+.++.....
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~--------------------- 155 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLV--------------------- 155 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhh---------------------
Confidence 99999887 6778899999999999973 45558999999999999999987532100
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
++. ..+..=++.. +....|++++..+.|..+++|+.++.+++||.++
T Consensus 156 ----------------------~s~-n~~t~~sl~s----------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 156 ----------------------ASF-NNVTVNSLGS----------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred ----------------------hhc-cccccccCCC----------CCccceeeeecCCcceEEEecCcccceEEecccc
Confidence 000 0000001100 2334688999999999999999999999999887
Q ss_pred ccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee
Q 001318 637 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 716 (1101)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 716 (1101)
.++.++ +
T Consensus 203 ~~kimk-L------------------------------------------------------------------------ 209 (735)
T KOG0308|consen 203 CKKIMK-L------------------------------------------------------------------------ 209 (735)
T ss_pred ccceee-e------------------------------------------------------------------------
Confidence 732211 1
Q ss_pred eccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccc
Q 001318 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~ 796 (1101)
T Consensus 210 -------------------------------------------------------------------------------- 209 (735)
T KOG0308|consen 210 -------------------------------------------------------------------------------- 209 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 797 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 797 ~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
. +|...|..+..++||..+++++ ||+|++||+...+|+.++..|...|.++..+| +-..+.+|+.||.|+.=|
T Consensus 210 ---r--GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 210 ---R--GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred ---e--ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecc
Confidence 1 1666677777778888888887 88899999998999999999999999999999 899999999999999999
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
+.+......+-....+|..+..+.+.+-+=+++.|+.|+-|.... ...+++.|.+..
T Consensus 284 l~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~-----------------------~~~l~~s~~~~~ 340 (735)
T KOG0308|consen 284 LRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP-----------------------DIALSVSGDLDF 340 (735)
T ss_pred cCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc-----------------------ccccccCCCCCc
Confidence 988432222223445677777764444445667899999997654 124455555555
Q ss_pred EEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 956 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 956 ~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.+.+....+++... ...... +| ...|..-++-.|.+.+++-...|.+.+||+-.++.+..+.
T Consensus 341 ~~T~~~~~~~~~~~-tp~~vi--~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 341 FSTDSNNHSCDLTN-TPDSVI--PG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred ccccCCCccccccC-CCceec--cC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 44555445554322 111111 12 4466666777899999999999999999998777665443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=238.33 Aligned_cols=273 Identities=19% Similarity=0.270 Sum_probs=227.7
Q ss_pred EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCC
Q 001318 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 429 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 429 (1101)
-+.|+..+ ++|+|. ...|++|+..+++.... ...+...|+++.|+++|.+||+|..+|
T Consensus 182 lldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~g 239 (484)
T KOG0305|consen 182 LLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSDG 239 (484)
T ss_pred HhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecCC
Confidence 35677444 366665 25899999999885542 333478999999999999999999999
Q ss_pred eEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE-ecCcccCeEEEeeeec
Q 001318 430 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHK 507 (1101)
Q Consensus 430 ~i~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~ 507 (1101)
.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 240 ~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-- 310 (484)
T KOG0305|consen 240 TVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-- 310 (484)
T ss_pred eEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC--
Confidence 99999999887666 5667 99999999998 34 689999999999999998877655 88999999999984
Q ss_pred CCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe--CCCcE
Q 001318 508 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSI 585 (1101)
Q Consensus 508 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i 585 (1101)
.++.++++|+.|+.+.+||....+....+..|...|..++|+|-.. ..|++|+ .|+.|
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADRCI 370 (484)
T ss_pred CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCcccEE
Confidence 5668999999999999999988899999999999999999988765 5688854 79999
Q ss_pred EEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE--eCCCcEEEEEecCccccccccccccccccccCCCCCCccc
Q 001318 586 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 663 (1101)
Q Consensus 586 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1101)
++||..+++.+..+.... .|.++.|++..+-|+++ ..++.|.||+..+. ..+..+
T Consensus 371 ~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l------------------- 427 (484)
T KOG0305|consen 371 KFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL------------------- 427 (484)
T ss_pred EEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee-------------------
Confidence 999999999998887544 49999999988777764 45678899987653 222222
Q ss_pred ccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEE
Q 001318 664 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 743 (1101)
.+|..+|..
T Consensus 428 -----------------------------------------------------------------------~gH~~RVl~ 436 (484)
T KOG0305|consen 428 -----------------------------------------------------------------------LGHTSRVLY 436 (484)
T ss_pred -----------------------------------------------------------------------cCCcceeEE
Confidence 238889999
Q ss_pred EEEcCCCceEEeeecCceEEeeec
Q 001318 744 LIFTNSGNAILALASNAIHLLWKW 767 (1101)
Q Consensus 744 l~~s~~g~~l~~~~~dg~i~iw~~ 767 (1101)
++++|||..+++++.|.++++|++
T Consensus 437 la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 437 LALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred EEECCCCCEEEEecccCcEEeccc
Confidence 999999999999999999999986
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=225.68 Aligned_cols=293 Identities=16% Similarity=0.199 Sum_probs=224.4
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeee--------------eee-ccccCCeeEEEEcCCCCe
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--------------LEI-DAHVGGVNDIAFSHPNKQ 466 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~--------------~~l-~~h~~~V~~~~~s~d~~~ 466 (1101)
....|.-+|.|++++||+++.++++.|++|.=|++.+++..+.+ ..- .+|...|.+++.|+||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 47789999999999999999999999999999999988743110 011 37889999999999999
Q ss_pred EEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEE
Q 001318 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 546 (1101)
Q Consensus 467 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 546 (1101)
+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-... ..+++++.|++|++|+++....+.++-+|...|..+
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 89999999999999999999999999999999999995444 579999999999999999988888888888888877
Q ss_pred EEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC
Q 001318 547 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626 (1101)
Q Consensus 547 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 626 (1101)
....-++ .+-+|+.|+++++|++..... ..+.++. ..+-|++|-.+ ..+++|+++
T Consensus 293 daL~reR---------------------~vtVGgrDrT~rlwKi~eesq-lifrg~~--~sidcv~~In~-~HfvsGSdn 347 (479)
T KOG0299|consen 293 DALSRER---------------------CVTVGGRDRTVRLWKIPEESQ-LIFRGGE--GSIDCVAFIND-EHFVSGSDN 347 (479)
T ss_pred chhcccc---------------------eEEeccccceeEEEeccccce-eeeeCCC--CCeeeEEEecc-cceeeccCC
Confidence 7665554 344456999999999954433 3344333 35778888754 578999999
Q ss_pred CcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceee
Q 001318 627 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 706 (1101)
Q Consensus 627 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 706 (1101)
|.|.+|++...+.+...-..|.....
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~~------------------------------------------------------ 373 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIPE------------------------------------------------------ 373 (479)
T ss_pred ceEEEeeecccCceeEeeccccccCC------------------------------------------------------
Confidence 99999999776333222222211000
Q ss_pred ccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCcc
Q 001318 707 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 786 (1101)
Q Consensus 707 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~l 786 (1101)
. +...+...|++++..|...++++++.+|.+++|.+..
T Consensus 374 --------------------~-----~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~----------------- 411 (479)
T KOG0299|consen 374 --------------------L-----DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED----------------- 411 (479)
T ss_pred --------------------c-----cccccccceeeeEecccCceEEecCCCCceEEEEecC-----------------
Confidence 0 0011346899999999999999999999999998743
Q ss_pred ccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001318 787 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 824 (1101)
Q Consensus 787 w~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s 824 (1101)
|......+....-.+.|.+++|+++|+++++|-
T Consensus 412 -----g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 412 -----GLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred -----CccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 211111111222567899999999999888775
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=229.28 Aligned_cols=305 Identities=13% Similarity=0.216 Sum_probs=229.3
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
-.+++|+..|.++++ ++.|..|++|+.|.+|++||+......... -+.+.....+.+.++.|
T Consensus 161 i~l~hgtk~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------------fr~l~P~E~h~i~sl~y 222 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMRS----------------FRQLQPCETHQINSLQY 222 (641)
T ss_pred EeccCCceEEEEeee--cCCCceeeeccccceEEEEecccccccchh----------------hhccCcccccccceeee
Confidence 457788999999987 667789999999999999999764332110 02233334456777778
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEcC----------CCCCCCcCeEEEccC-CCEEEEEeCCCcEEEEEecCcc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA----------DGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
++.|+.|++.+.....+++|-+..+.....++ .+|...++|.+|+|+ ...+++++.||++|+|++.+.+
T Consensus 223 s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 223 SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence 88888899999899999999766655554442 356677899999994 5678899999999999998775
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
...+.+.....
T Consensus 303 ~q~qVik~k~~--------------------------------------------------------------------- 313 (641)
T KOG0772|consen 303 SQLQVIKTKPA--------------------------------------------------------------------- 313 (641)
T ss_pred hheeEEeeccC---------------------------------------------------------------------
Confidence 44433321100
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
.+..-.++.++|++||+.+++++.||.|.+|+.......+. ..+.
T Consensus 314 ----------------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~-----------------~~vk-- 358 (641)
T KOG0772|consen 314 ----------------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV-----------------MKVK-- 358 (641)
T ss_pred ----------------CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc-----------------eEee--
Confidence 11345678999999999999999999999999732211111 1111
Q ss_pred cCCCCCCC--CeeEEEEecCCCEEEEEe-CCeEEEEECCCCc-eeeEecCC--CCCeEEEEEecCCCcEEEEEe------
Q 001318 799 VTDSNPEE--AVPCFALSKNDSYVMSAS-GGKISLFNMMTFK-TMATFMPP--PPAATFLAFHPQDNNIIAIGM------ 866 (1101)
Q Consensus 799 ~~~~~~~~--~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~-~~~~~~~~--~~~i~~l~~sp~d~~~lasg~------ 866 (1101)
..|.. .|+++.||+||++|++-+ |+++++||+...+ ++.+..+. .-.-+.++||| +.++|++|+
T Consensus 359 ---~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 359 ---DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGM 434 (641)
T ss_pred ---eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCC
Confidence 12555 899999999999999988 9999999998643 44444433 23467899999 899999986
Q ss_pred ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 867 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 867 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
..|.+++||..+...+.++.-....|..+.|+|-=+.|..++.||+++||=-.+
T Consensus 435 ~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 435 TAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred CCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 357899999999999999887788899999999888888889999999884433
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=225.60 Aligned_cols=284 Identities=17% Similarity=0.225 Sum_probs=219.4
Q ss_pred ccCCCCCeEEEEEecCC-CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 403 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
+.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....++. ++..|.+.|..|++.. + .+++++.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc-c---ceEEecCCcceeee
Confidence 68999999999999976 889999999999999999877666 6889999999999987 3 48999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
.+.. ..++++.+ ...+..+.-+. .+..++|++. .|-+||.....++..+.-....+.++.|+|-..
T Consensus 135 k~~~-~p~~tilg-~s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-------- 200 (433)
T KOG0268|consen 135 KIDG-PPLHTILG-KSVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET-------- 200 (433)
T ss_pred eccC-Ccceeeec-ccccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence 9665 46677654 33455554322 2357888875 588899988777777766666667777766655
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
..|++++.|+.|.+||++.+.++..+..... -+.++|+|.+-.++++++|..++.+|++.....+
T Consensus 201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 201 ------------SILASCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred ------------hheeeeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccc
Confidence 4577777999999999999999887764433 5679999988899999999999999987552222
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
....
T Consensus 266 ~v~~---------------------------------------------------------------------------- 269 (433)
T KOG0268|consen 266 NVHK---------------------------------------------------------------------------- 269 (433)
T ss_pred hhhc----------------------------------------------------------------------------
Confidence 1111
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
T Consensus 270 -------------------------------------------------------------------------------- 269 (433)
T KOG0268|consen 270 -------------------------------------------------------------------------------- 269 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
+|.+.|.+++|||.|+-+++|+ |.+|+||.+..+.....+.. ....|.|+.||. |.+++++|++|+.|++|.....
T Consensus 270 -dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 270 -DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred -ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchh
Confidence 1666677777888888888888 88888888776544332211 235799999999 9999999999999999987654
Q ss_pred e
Q 001318 880 E 880 (1101)
Q Consensus 880 ~ 880 (1101)
+
T Consensus 348 e 348 (433)
T KOG0268|consen 348 E 348 (433)
T ss_pred h
Confidence 4
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=239.92 Aligned_cols=257 Identities=16% Similarity=0.268 Sum_probs=214.6
Q ss_pred CCCCCCcceeeccc-CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccC-CC
Q 001318 330 TPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PG 407 (1101)
Q Consensus 330 ~~~~~~~~~~~~~~-h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~ 407 (1101)
-.+.....+..+.. +...|+++.|+++|++ ||+|..+|.|.|||..+.+.+.. +.+ |.
T Consensus 201 lW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~ 260 (484)
T KOG0305|consen 201 LWSASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHA 260 (484)
T ss_pred EEecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCcC
Confidence 33444444555554 3899999999999996 99999999999999998877663 555 99
Q ss_pred CCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc
Q 001318 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 487 (1101)
Q Consensus 408 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 487 (1101)
..|.+++|+ +..+.+|+.|+.|..+|+...+.... ++.+|...|..++|++|+. ++++|+.|+.+.|||.....
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCcc
Confidence 999999999 78899999999999999998775543 4889999999999999999 79999999999999998889
Q ss_pred eEEEecCcccCeEEEeeeecCCccEEEEEe--cCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 488 KQYIFEGHEAPVYSVCPHHKENIQFIFSTA--LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 488 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
.+..+..|.+.|.+++|.|-.. .+|++|+ .|++|++||..++..+.... ....|.++.|++..+
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k------------ 400 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK------------ 400 (484)
T ss_pred ccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC------------
Confidence 9999999999999999998766 4788875 49999999999766554433 234466666666554
Q ss_pred EEEEcCCCCEEEE--EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 566 VVQFDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 566 ~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.+++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 401 ---------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ---------ELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---------EEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4444 45678999999999999999887655 7999999999999999999999999998664
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=219.66 Aligned_cols=279 Identities=17% Similarity=0.292 Sum_probs=227.0
Q ss_pred CcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccccc
Q 001318 607 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 686 (1101)
Q Consensus 607 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1101)
.+.++...+....+++|+.|..+.++|...+ +.+..+.|
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~G---------------------------------------- 259 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKG---------------------------------------- 259 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccC----------------------------------------
Confidence 4667777777788999999999999998777 55555443
Q ss_pred ccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeee
Q 001318 687 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 687 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
|...|..+.|+++...+++++.|..|+||.
T Consensus 260 --------------------------------------------------h~kki~~v~~~~~~~~v~~aSad~~i~vws 289 (506)
T KOG0289|consen 260 --------------------------------------------------HTKKITSVKFHKDLDTVITASADEIIRVWS 289 (506)
T ss_pred --------------------------------------------------cceEEEEEEeccchhheeecCCcceEEeec
Confidence 667889999999999999999999999998
Q ss_pred ccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC-
Q 001318 767 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP- 844 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~- 844 (1101)
..... .... . ..|..+|+.+..+|.|.||++++ |+++.+.|++++.++.....
T Consensus 290 ~~~~s-------------------~~~~----~--~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 290 VPLSS-------------------EPTS----S--RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred ccccc-------------------Cccc----c--ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 63211 0001 1 12899999999999999999999 89999999999988876653
Q ss_pred -CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccc
Q 001318 845 -PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 923 (1101)
Q Consensus 845 -~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~ 923 (1101)
..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|..++|+.+|-+||+++.|+.|++||++.-+.
T Consensus 345 ~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 345 TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred cccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc
Confidence 234689999999 999999999999999999999999999999999999999999999999999999999999987442
Q ss_pred ccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCC--ceeeeeccCCCCCCCeeEEEEcCCCCEEEEE
Q 001318 924 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYAC 1000 (1101)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~--~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~ 1000 (1101)
.+ .+..... .++.++.|.+.|++|+.+ .+=+|++++-.+ ..++..+ ..|.+..+++.|..+.++++++
T Consensus 424 ~k--t~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~--~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 424 FK--TIQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL--ADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred cc--eeecccc-----ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh--hhcccccceeeecccceEEeec
Confidence 22 2222222 258999999999999995 555666666444 3444444 3678899999999999999999
Q ss_pred EcCCeEEEEEc
Q 001318 1001 FLDATVCVFSA 1011 (1101)
Q Consensus 1001 s~dg~v~vwd~ 1011 (1101)
+.|..++++.+
T Consensus 495 smd~~l~~~a~ 505 (506)
T KOG0289|consen 495 SMDAILRLYAL 505 (506)
T ss_pred cchhheEEeec
Confidence 99999888764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=236.39 Aligned_cols=238 Identities=17% Similarity=0.287 Sum_probs=204.2
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE-EEEec-C
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIWSP-D 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~sp-d 418 (1101)
+.+|.+.|..+++.+... ++++|.||++++|+-..++.+.. ..+.+|.+.|.+ +++-+ |
T Consensus 10 l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICYAESD 70 (745)
T ss_pred eccCccchheeEecCCeE--EeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccceecccc
Confidence 446999999999988874 89999999999999766655432 246788888888 88886 6
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
+..|++|+.|.+|.+|...+...+. +|.||...|++++...++. ++|||.|.+++||- .+++...+.+|+..
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~gH~as 142 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQGHTAS 142 (745)
T ss_pred CcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCCcchh
Confidence 6679999999999999999987655 7999999999999887775 89999999999995 56777889999999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|+++...+. +.++|||.|++|++|.- ++...++.+|...|..+++-+++. |++
T Consensus 143 VWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~----------------------flS 195 (745)
T KOG0301|consen 143 VWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH----------------------FLS 195 (745)
T ss_pred eeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC----------------------eEe
Confidence 999987543 38999999999999954 677888999999999999988875 999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
++.||.|++|++ +|+.+..+.+| ...+.+++...++..++++++|++++||+..
T Consensus 196 csNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 196 CSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999999999999 77788777655 4479999988899999999999999999865
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=210.45 Aligned_cols=241 Identities=21% Similarity=0.228 Sum_probs=202.3
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCc--EEEEEeccCeEEEEEeec
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~lasg~~dg~v~vwd~~~ 878 (1101)
..|.+.|+++|+ ++.|+|+|+ |.+|+|||+.+...+..+-.|.+.|+++.|.+ ... .|.+|++||.|.+|+..+
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 349999999998 678999999 99999999999999999999999999999998 543 899999999999999999
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 958 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 958 (1101)
.+++..+++|.+.|+.++.+|.|++-++.+.|+.++.||+-+|+......+.. ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999877533322221 235699999999999998
Q ss_pred CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccce
Q 001318 959 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1038 (1101)
Q Consensus 959 d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1038 (1101)
...|-+|.+.+......+.. ...+.|+.|- ++..|++|.+|+.|.+||.+++...+.+. +|... |-
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~R-VK-- 253 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENR-VK-- 253 (362)
T ss_pred ccEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhh-ee--
Confidence 89999999998887766642 3567777776 67788999999999999999988877766 22222 33
Q ss_pred EEE-EeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1039 VIA-AHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1039 ~i~-~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
++. |...++.+|+++|.||.|+|||+....
T Consensus 254 ~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 343 333367899999999999999998773
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=242.69 Aligned_cols=235 Identities=14% Similarity=0.195 Sum_probs=181.2
Q ss_pred EecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC-CCeEEEEEcCCeEEEEEccCCce-
Q 001318 364 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE- 441 (1101)
Q Consensus 364 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~- 441 (1101)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556677777765543322 47899999999999996 89999999999999999986432
Q ss_pred e----eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEe
Q 001318 442 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 517 (1101)
Q Consensus 442 ~----~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~ 517 (1101)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|+ ++|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws--pdG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN--IKGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC--CCCCEEEEEe
Confidence 1 122357899999999999999875 56899999999999999999888776 66789999985 5568999999
Q ss_pred cCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC----cEEEEECCC-
Q 001318 518 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS- 592 (1101)
Q Consensus 518 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~- 592 (1101)
.|+.|++||++++.....+..|.+.+.... +....|+++++++++++.|+ .|++||++.
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~----------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKN----------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEE----------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 999999999999877777776665443322 22234567778899988664 799999985
Q ss_pred CceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 593 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 593 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++++..+..+.....+......++|.++++|+.|+.|++|++..+
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 566766655444333333444557899999999999999999765
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=209.16 Aligned_cols=207 Identities=18% Similarity=0.206 Sum_probs=161.7
Q ss_pred ccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 403 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 403 ~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
-....+.|.+|+||| ...+++++|.|++||+|+++....+.. .....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 345678999999999 666677899999999999987422222 34667999999999999998 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
|+.+++ +..+..|.++|..+.|....+-..|++||-|++|++||.+...++.++..+.. ++++..
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv------------- 164 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADV------------- 164 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhc-------------
Confidence 999995 56677799999999998777667899999999999999998777776665542 222211
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
-...++++..++.|.+|+++.+..........-.-.++|++..+|....+.|+-+|.+-+..+..+
T Consensus 165 ----------~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 165 ----------LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred ----------cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 113577888999999999987654332221112235789999998888899999999998887664
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=227.69 Aligned_cols=270 Identities=14% Similarity=0.225 Sum_probs=220.6
Q ss_pred cceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEE
Q 001318 336 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 336 ~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 415 (1101)
-++...+.|.+.|+.+.+-|....++|+++..+.|.|||+.+..-.... .+.-.+...+.+|...=+.|+|
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsW 185 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSW 185 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccc
Confidence 3455567899999999999999999999999999999999765433210 0011223368899998899999
Q ss_pred ec-CCCeEEEEEcCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC--CCce
Q 001318 416 SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAK 488 (1101)
Q Consensus 416 sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~ 488 (1101)
++ ..-+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.+.
T Consensus 186 n~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 186 NRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred ccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCC
Confidence 99 566899999999999999986433 5556678999999999999998877 79999999999999999 5666
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
.+...+|.+.|+|+.|++.. +.+|++|+.|++|.+||+++.. ....+..|...|..+.|+|...
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e-------------- 329 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE-------------- 329 (422)
T ss_pred cccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC--------------
Confidence 67888999999999998765 4799999999999999999864 5668889999999999999876
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCc------------eeEEEcCCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEe
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILAT 634 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~ 634 (1101)
..|++++.|+.+.+||+..-. +...|...+|...|..+.|+|+.. .+++.++|+.++||.+
T Consensus 330 ------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 330 ------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 568999999999999986422 222344556677899999999665 5667789999999987
Q ss_pred cC
Q 001318 635 SD 636 (1101)
Q Consensus 635 ~~ 636 (1101)
..
T Consensus 404 s~ 405 (422)
T KOG0264|consen 404 AE 405 (422)
T ss_pred cc
Confidence 63
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-23 Score=225.40 Aligned_cols=518 Identities=15% Similarity=0.199 Sum_probs=325.4
Q ss_pred EEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCe-EEEEEecCCCcEEEEeCCCCceE
Q 001318 411 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWDATNGAKQ 489 (1101)
Q Consensus 411 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~-~~l~s~~~d~~i~iwd~~~~~~~ 489 (1101)
..-.||+|+++++... +..|.||...++.++. .+.+|..++..+.+.|.... .++++++.||.|++||...+..+
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 3456899999998776 4679999999999887 68899999999999887663 47889999999999999999999
Q ss_pred EEecCcccCeEEEeeeec-CCccEEE-EEecCCcEE-EEecCCCCceeeecCCCCceeEEEE-ccCCceEEeccccCcee
Q 001318 490 YIFEGHEAPVYSVCPHHK-ENIQFIF-STALDGKIK-AWLYDNLGSRVDYEAPGRWCTTMAY-SADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~-~~~~~l~-s~~~dg~i~-~wd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~~~~~~~~~~~~ 565 (1101)
+++..+. ++.++.+.+. .+...++ ....|..+. ....+..+....+ .-..+ +..+ .....+. .-.
T Consensus 96 kt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~-------~~~t~~~~~~-d~~~~~~--~~~ 164 (792)
T KOG1963|consen 96 KTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRF-------VLATFDSAKG-DFLKEHQ--EPK 164 (792)
T ss_pred EEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeee-------Eeeeccccch-hhhhhhc--CCc
Confidence 9887443 3333332110 0000111 111111110 0000000000000 00000 0000 0000010 123
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc---CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccc
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 642 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 642 (1101)
++.+++.|++... ..+..+.+|+..++. ..... ...|...+++.+++|+++++++|..||.|.+|.--...
T Consensus 165 ~I~~~~~ge~~~i-~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~---- 238 (792)
T KOG1963|consen 165 SIVDNNSGEFKGI-VHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS---- 238 (792)
T ss_pred cEEEcCCceEEEE-EEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc----
Confidence 4555666554444 445678899887755 11111 11233347899999999999999999999999632210
Q ss_pred ccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccC
Q 001318 643 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 722 (1101)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~ 722 (1101)
..+-+..+|
T Consensus 239 -----------------------------------------------------------------~~~~t~t~l------ 247 (792)
T KOG1963|consen 239 -----------------------------------------------------------------DDSETCTLL------ 247 (792)
T ss_pred -----------------------------------------------------------------cccccceEE------
Confidence 000111111
Q ss_pred CCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCC
Q 001318 723 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 802 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~ 802 (1101)
+=|...|.+++|+++|.+|++||..+.+.+|.+. ++. ...++.
T Consensus 248 ------------HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~----------------------T~~--kqfLPR- 290 (792)
T KOG1963|consen 248 ------------HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE----------------------TGK--KQFLPR- 290 (792)
T ss_pred ------------EecccccceeEEecCCceEeecccceEEEEEeec----------------------CCC--cccccc-
Confidence 1177899999999999999999999999999873 332 112222
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC-----------CCCeEEEEEecCCCcEEEEEeccCe
Q 001318 803 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-----------PPAATFLAFHPQDNNIIAIGMDDSS 870 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~l~~sp~d~~~lasg~~dg~ 870 (1101)
-.+.|..+.+|||+.+.+... |+.|.+..+.+.....++.+. .+-.+.++++| ..+.++..+..|.
T Consensus 291 -Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~ 368 (792)
T KOG1963|consen 291 -LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGH 368 (792)
T ss_pred -cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCce
Confidence 578899999999999888876 999999988776665554432 23357788999 6778888899999
Q ss_pred EEEEEeecceEeeeec-----------CcccCeeEEEEcCCCCEEEEEeC--------CC--ceEEEeCCCcccccceee
Q 001318 871 IQIYNVRVDEVKSKLK-----------GHSKRITGLAFSHALNVLVSSGA--------DS--QLCVWSSDGWEKQKNRFL 929 (1101)
Q Consensus 871 v~vwd~~~~~~~~~l~-----------~h~~~V~~l~~s~dg~~l~s~s~--------D~--~v~iwd~~~~~~~~~~~~ 929 (1101)
|.+||+.+.+.+..+. .+.-.+++++.+-.|.+++|+-. || .+++|-.....+......
T Consensus 369 vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T 448 (792)
T KOG1963|consen 369 VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT 448 (792)
T ss_pred EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE
Confidence 9999998877665542 13345788888888999998742 33 478997766443222222
Q ss_pred ecCCCCCCCCCCCeEEEEcCCCc-EEEE-EeCCeEEEEEcCCceeeee--------ccCCCCCCCeeEEEEcCCCCEEEE
Q 001318 930 QIPTGRTPTAQSDTRVQFHQDQI-HFLV-VHETQLAIFETTKLECVKQ--------WVPRESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 930 ~~~~~~~~~~~~v~~~~~s~dg~-~la~-~~d~~v~vwd~~~~~~~~~--------~~~~~h~~~i~~l~~spdg~~l~s 999 (1101)
.+..-|.. ..+..+.+++... .+++ +.|+.+++|-....+.+.. ....-|..++++++||.||..|++
T Consensus 449 ~I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~ 526 (792)
T KOG1963|consen 449 KINNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV 526 (792)
T ss_pred EEecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE
Confidence 22222222 2233333444333 5555 6999999998844322111 111236889999999999977665
Q ss_pred EEcCCeEEEEEcCC-ceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccc
Q 001318 1000 CFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1071 (1101)
Q Consensus 1000 ~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~ 1071 (1101)
+.|++|.+||..+ .++.+...... .+.. + .. ..+-.+.+ ..+.....+.+.+|++.+..-.|
T Consensus 527 -s~~~~Itiwd~~~~~~l~~~~~~~~-~~~~---~-~~--~~~~~~~~--~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 527 -SFDDTITIWDYDTKNELLCTEGSRN-WPIA---E-LL--FTAQTQND--GALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred -ecCCEEEEecCCChhhhhccccccc-cchH---h-Hh--hhcccccc--cceeeccCceEehHhhhhhheec
Confidence 5788999999999 56665554222 2211 1 11 11111213 34455567899999999888666
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=215.55 Aligned_cols=282 Identities=20% Similarity=0.274 Sum_probs=230.1
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCc
Q 001318 453 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS 532 (1101)
Q Consensus 453 ~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~ 532 (1101)
..+.++...+... .+++|+.|..+.++|..+++.+.+++||...|+.+.+++.. ..+++++.|..|++|.......
T Consensus 220 pgi~ald~~~s~~--~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSSS--KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCCC--cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccC
Confidence 4678888888744 69999999999999999999999999999999999987655 5899999999999998887666
Q ss_pred eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEE
Q 001318 533 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 612 (1101)
Q Consensus 533 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 612 (1101)
......|..+|+. +..+|.|.||++++.|++..+.|++++..+...........+++.+
T Consensus 296 ~~~~~~h~~~V~~---------------------ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 296 PTSSRPHEEPVTG---------------------LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred cccccccccccee---------------------eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 5555556555544 4555566799999999999999999999888877544445688999
Q ss_pred EccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCC
Q 001318 613 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 692 (1101)
Q Consensus 613 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1101)
|+|||..+.+|..||.|+|||+.++. ....
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~-~~a~------------------------------------------------- 384 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQT-NVAK------------------------------------------------- 384 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCcc-cccc-------------------------------------------------
Confidence 99999999999999999999987651 1100
Q ss_pred CccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeecccccc
Q 001318 693 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER 772 (1101)
Q Consensus 693 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 772 (1101)
T Consensus 385 -------------------------------------------------------------------------------- 384 (506)
T KOG0289|consen 385 -------------------------------------------------------------------------------- 384 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC-CCCeE
Q 001318 773 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAAT 850 (1101)
Q Consensus 773 ~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~-~~~i~ 850 (1101)
+. +|.++|.+++|+.+|-|||++. |+.|++||++..+...++... ..++.
T Consensus 385 --------------------------Fp--ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 385 --------------------------FP--GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN 436 (506)
T ss_pred --------------------------CC--CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence 11 2777788888888888888887 677888888877777776543 23699
Q ss_pred EEEEecCCCcEEEEEeccCeEEEEEee--cceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 851 FLAFHPQDNNIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 851 ~l~~sp~d~~~lasg~~dg~v~vwd~~--~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
++.|.+ .|.+|++++.|=+|++++-. ++.++..+..|.+..+++.|..+.++++++|.|..++++.+
T Consensus 437 s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 437 SLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999999 89999999888666666633 57788889999999999999999999999999999888754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=236.67 Aligned_cols=224 Identities=17% Similarity=0.235 Sum_probs=177.7
Q ss_pred CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce--------EeeeecCcccCeeEEE
Q 001318 825 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------VKSKLKGHSKRITGLA 896 (1101)
Q Consensus 825 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~--------~~~~l~~h~~~V~~l~ 896 (1101)
++.|++|+......+..+.+|...|.+++|+|+++.+||+|+.||.|+|||+.++. .+..+.+|...|.+++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 57799999988788889999999999999999558899999999999999997642 3456789999999999
Q ss_pred EcCCCCE-EEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeee
Q 001318 897 FSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 974 (1101)
Q Consensus 897 ~s~dg~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~ 974 (1101)
|+|++.. |++++.|++|+|||+.+++... .. . +. ..|.+++|+|+|.+|++ +.|+.|+|||+.+++.+.
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~----~i-~-~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAF----QI-N-MP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEEE----EE-e-cC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 9999875 5799999999999999865321 11 1 11 36899999999999998 579999999999999888
Q ss_pred eccCCCCCCCee-----EEEEcCCCCEEEEEEcCC----eEEEEEcCC-ceeeeecCCCcccCCCCCCCCccceEEEEeC
Q 001318 975 QWVPRESSAPIT-----HATFSCDSQLVYACFLDA----TVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1044 (1101)
Q Consensus 975 ~~~~~~h~~~i~-----~l~~spdg~~l~s~s~dg----~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~ 1044 (1101)
.+. +|.+.+. ...|++|+.+|++++.|+ +|+|||+.+ ++.+..+. +..+ ..++...|.+
T Consensus 204 tl~--gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~----ld~~-----~~~L~p~~D~ 272 (568)
T PTZ00420 204 SFH--IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS----IDNA-----SAPLIPHYDE 272 (568)
T ss_pred EEe--cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE----ecCC-----ccceEEeeeC
Confidence 775 6665543 334678999999988774 799999985 55565443 1111 2222345666
Q ss_pred CCCCEEEEEecCCcEEEEeccCCC
Q 001318 1045 QEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1045 ~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+++.++++|+.|++|++|++..+.
T Consensus 273 ~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 273 STGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCCEEEEEECCCeEEEEEccCCc
Confidence 678899999999999999998764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=215.17 Aligned_cols=255 Identities=15% Similarity=0.216 Sum_probs=201.6
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
+..+++.|..-|.++.+|...++ +.||+. |.|+|||+....... +....-.....+.|+.+..+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEec
Confidence 34567889999999999999997 888886 899999997542211 11111123346789999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
|||+.|++|+.-.++.|||+..... +...++..-.-..++++.+||.+ +.++|..||.|.|||+.+...++.|+||+
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987543 22223444445678899999999 89999999999999999999999999999
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
+.+.|+.+ +.+|..|.+|+.|.+||.||++++.+...... ...|..+.++|++.++
T Consensus 552 DGascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhdF----------------------~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 552 DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF----------------------SSQIFSLGYCPTGDWL 607 (705)
T ss_pred CCceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhhh----------------------hhhheecccCCCccce
Confidence 99999987 56778999999999999999998765543221 1245566777888899
Q ss_pred EEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++|-+++.+.+...... ....+ +.+...|.++.|.+.|+++++.+.|+.+..|...-|
T Consensus 608 avGMens~vevlh~skp-~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSKP-EKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eeecccCcEEEEecCCc-cceee--cccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 99999999988886443 33333 334457999999999999999999999999987666
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=208.25 Aligned_cols=329 Identities=15% Similarity=0.233 Sum_probs=244.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccccccc
Q 001318 575 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 654 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 654 (1101)
.+++...++++.. +.+..+.+| ...|..++.......+.+++.|.+-+||.++++ .++..+.
T Consensus 126 rivssFk~~t~~~------~lvre~~GH--kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-~CL~~Y~--------- 187 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF------RLVRELEGH--KDGIWHVAADSTQPICGTASADHTARIWSLESG-ACLATYT--------- 187 (481)
T ss_pred hheeeecCCceeE------eehhhhccc--ccceeeehhhcCCcceeecccccceeEEeeccc-cceeeec---------
Confidence 3566666665332 234444444 447888888777778889999999999999988 4444332
Q ss_pred CCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCc
Q 001318 655 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 734 (1101)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 734 (1101)
T Consensus 188 -------------------------------------------------------------------------------- 187 (481)
T KOG0300|consen 188 -------------------------------------------------------------------------------- 187 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCC----------Ccee-eeecCcccc---CCCcccc---cc
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS----------GKAT-ASVAPQLWQ---PPSGIMM---TN 797 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~----------~~~~-~~~~~~lw~---~~~g~~~---~~ 797 (1101)
+|.+.|.++.|++.+.++++++.|++..||.....-..|. .... ......--| -.+|..+ ..
T Consensus 188 -GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~ 266 (481)
T KOG0300|consen 188 -GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLM 266 (481)
T ss_pred -ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeee
Confidence 3777888999999999999999999999987422100000 0000 000000000 0111111 12
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 798 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 798 ~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
.++ +|...|.+..|-..|+.+++++ |.+-.+||+++++.+..+.+|..+.+.++-+| ..+++++.+.|-+.++||+
T Consensus 267 ~lt--gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDF 343 (481)
T KOG0300|consen 267 RLT--GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDF 343 (481)
T ss_pred eee--ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccc
Confidence 233 4999999999999999999999 99999999999999999999999999999999 8999999999999999999
Q ss_pred ecc-eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 877 RVD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 877 ~~~-~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
... ..+..|+||...|+++.|.-| ..+++|+.|.+|+|||+.+... .+..... ..++..++.+..+..+|
T Consensus 344 ReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIRt----dS~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 344 REAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIRT----DSPANRVAVSKGHPIIA 414 (481)
T ss_pred hhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeeec----CCccceeEeecCCceEE
Confidence 743 456889999999999999876 5789999999999999988442 1222211 14678999999999999
Q ss_pred E-EeCCeEEEEEcCCceeeeec--cCCCCCCCeeEEEEcCCCC--EEEEEEcCCeEEEEEcCCc
Q 001318 956 V-VHETQLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 956 ~-~~d~~v~vwd~~~~~~~~~~--~~~~h~~~i~~l~~spdg~--~l~s~s~dg~v~vwd~~~~ 1014 (1101)
. -.+++|++||++..+..+.. ...+|...|+|++|+.+.- -|++++.|..+.=|.+.+.
T Consensus 415 iPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 415 IPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 8 47789999999877665443 3458999999999987653 4888999999999998653
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=219.07 Aligned_cols=243 Identities=17% Similarity=0.237 Sum_probs=195.9
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.+-+|.+.|.|++-+|..-..+|+|+.||.|+|||+.+.+++. .+..|.+.|..|++..
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~-- 119 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ-- 119 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--
Confidence 3567999999999999984469999999999999999888776 4889999999999997
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
..+++++.|.+|+.|.++.. .++ ++.+ ...+..+.-+..+. .++|||. .|.|||.....++..+.--...|
T Consensus 120 ~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCce
Confidence 78899999999999998873 222 3332 34566777666666 6899986 58999999999999998888889
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.++.|++... ..|++|+.|+.|.+||++...++...... . ..+.++|+|.+-.|+++
T Consensus 191 ~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-m---------------------RTN~IswnPeafnF~~a 247 (433)
T KOG0268|consen 191 SSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-M---------------------RTNTICWNPEAFNFVAA 247 (433)
T ss_pred eEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-c---------------------cccceecCccccceeec
Confidence 9999987665 68889999999999999987766543211 1 12235555555568899
Q ss_pred eCCCcEEEEECCCCc-eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 580 GDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++|..++.||++..+ ++..... +...|.++.|||.|+-+++|+.|.+|+||.+..+
T Consensus 248 ~ED~nlY~~DmR~l~~p~~v~~d--hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 248 NEDHNLYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred cccccceehhhhhhcccchhhcc--cceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 999999999998753 4555553 4557999999999999999999999999998766
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=227.99 Aligned_cols=276 Identities=14% Similarity=0.237 Sum_probs=225.0
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeE-EEE
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-FAL 813 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~-~~~ 813 (1101)
.+|...|..+++.+.. .+++++.||++++|+-.... ......+ .+|.+.|.. +++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~---------------------~l~~~~~--~~~~g~i~~~i~y 66 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQ---------------------YLETHAF--EGPKGFIANSICY 66 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCcc---------------------cccceec--ccCcceeecccee
Confidence 4688889888877666 58999999999999752211 0111111 225565655 777
Q ss_pred ec-CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccC
Q 001318 814 SK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR 891 (1101)
Q Consensus 814 s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~ 891 (1101)
.+ ++-.+++|+ |.+|.+|.......+.++++|...|++++... ++. +++|+.|.+++||-. +++...+++|...
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as 142 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS 142 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchh
Confidence 75 444578888 99999999999999999999999999999877 665 999999999999975 5667779999999
Q ss_pred eeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCce
Q 001318 892 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 971 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~ 971 (1101)
|+++++-|++ .++|||.|++|++|.-.+ +++++.||.. .|+.+++-+++.++-++.||.|+.|++ +|+
T Consensus 143 VWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge 210 (745)
T KOG0301|consen 143 VWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DGE 210 (745)
T ss_pred eeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cCc
Confidence 9999999987 899999999999998644 6778888875 899999999999999999999999999 677
Q ss_pred eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001318 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1051 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~ 1051 (1101)
++.... +|..-|+++....+++.++++++|++++||+.. ++.+.+. +|. ..++ ++.+-+ +| -++
T Consensus 211 ~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPt----tsiW--sa~~L~-Ng-DIv 274 (745)
T KOG0301|consen 211 VLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPT----TSIW--SAKVLL-NG-DIV 274 (745)
T ss_pred eeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCc----cceE--EEEEee-CC-CEE
Confidence 776655 999999999999999999999999999999987 6666666 442 2266 666665 33 488
Q ss_pred EEecCCcEEEEeccC
Q 001318 1052 LGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1052 s~~~dg~v~vW~~~~ 1066 (1101)
+|++||.|+||-...
T Consensus 275 vg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVDK 289 (745)
T ss_pred EeccCceEEEEEecc
Confidence 888999999999863
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-22 Score=184.81 Aligned_cols=247 Identities=14% Similarity=0.139 Sum_probs=200.0
Q ss_pred ccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 736 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
.|.+.|.+.+|+|+|..+++++.|..|++..++.+.....|.. +...-|.+.|..++|-.
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~d--------------------le~nmhdgtirdl~fld 146 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHD--------------------LEFNMHDGTIRDLAFLD 146 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcc--------------------eeeeecCCceeeeEEec
Confidence 4889999999999999999999999999976644332222211 11122899999999964
Q ss_pred ----CCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecC--
Q 001318 816 ----NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-- 887 (1101)
Q Consensus 816 ----dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~-- 887 (1101)
.+..|++++ |.+|++-|...|+..+.+.+|.+.|.++- +- ++-++++|+.|.+|++||++-..++.++..
T Consensus 147 ~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~ 224 (350)
T KOG0641|consen 147 DPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF 224 (350)
T ss_pred CCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee-cCcEEEccCCCceEEEEeeeccceeeeccCcc
Confidence 356788876 67899999999999999999999998873 23 578999999999999999998888877642
Q ss_pred -----cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCe
Q 001318 888 -----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ 961 (1101)
Q Consensus 888 -----h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~ 961 (1101)
.++.|.+++..|.|++|++|-.|....+||+..+. .++.+..|. ..|.++.|||...|+.+ +.|..
T Consensus 225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-----~iq~f~phs---adir~vrfsp~a~yllt~syd~~ 296 (350)
T KOG0641|consen 225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-----MIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMK 296 (350)
T ss_pred cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-----eeeeeCCCc---cceeEEEeCCCceEEEEecccce
Confidence 23679999999999999999999999999999865 344444444 48999999999999999 69999
Q ss_pred EEEEEcCCc--eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 962 LAIFETTKL--ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 962 v~vwd~~~~--~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
|++-|+... ..+.......|...+..+.|.|..--+++.+.|.++.+|-+.
T Consensus 297 ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 297 IKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999998753 222333345789999999999999889999999999999764
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-23 Score=198.50 Aligned_cols=187 Identities=17% Similarity=0.264 Sum_probs=145.5
Q ss_pred EEEEEcCCeEEEEEccCCc---------eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe
Q 001318 422 FGVAYSRHIVQIYSYHGGD---------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 492 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~---------~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 492 (1101)
+++|+....|.=+++.-.. .+.+.+.+..|.++|+++|.+ +. ++++||.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence 4455555555555443211 133456678999999999995 66 8999999999999999999999999
Q ss_pred cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 493 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
-.|.+.|+++.|.+......|++|+.||.|.+|+...-.....+..|.+.|+.+++.|.|
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-------------------- 139 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-------------------- 139 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC--------------------
Confidence 999999999999766544589999999999999999887777777777766666555544
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+..++.+.|+.+++||+-+|+.-..+..... ...+.|+|.|.+++.+.. ..|-+|.+.+.
T Consensus 140 -KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A 199 (362)
T KOG0294|consen 140 -KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK---ATLVSWSPQGDHFVVSGR-NKIDIYQLDNA 199 (362)
T ss_pred -ceEEEEcCCceeeeehhhcCccceeeccCCc---ceeeEEcCCCCEEEEEec-cEEEEEecccH
Confidence 5788899999999999999987666654332 344999999998888876 46778876554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=201.70 Aligned_cols=258 Identities=18% Similarity=0.228 Sum_probs=207.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec--CCC
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 420 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 420 (1101)
.|++.|-.+...--|++ |||++.|++|+|+.+..+.... ....|.||.++|+.++|-. -|.
T Consensus 9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 48889999999889996 9999999999999998765421 1125899999999999987 899
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC---ceEEEecCccc
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEA 497 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~ 497 (1101)
+||+++.||.|.||.-++| ...+..+...|...|++++|.|.+-.++|++++.||.|.|.+.++. ...+....|.-
T Consensus 72 iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 9999999999999999988 4555667889999999999999988889999999999999988754 12245567999
Q ss_pred CeEEEeeeecCC-c-----------cEEEEEecCCcEEEEecCCCC--ceeeecCCCCceeEEEEccCCceEEeccccCc
Q 001318 498 PVYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563 (1101)
Q Consensus 498 ~v~~v~~~~~~~-~-----------~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 563 (1101)
.|++++|.|..- | ..|++|+.|..|++|+.+... ...++..|...|..+++.|.-..
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl--------- 221 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL--------- 221 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC---------
Confidence 999999987521 1 569999999999999998753 33457889999999999886421
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 564 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 564 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
-..++++++.||++.||..+.... ..++ .+.....+..++||..|+.|++++.|+.|.+|.-..
T Consensus 222 --------~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 222 --------PKSTIASCSQDGTVIIWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred --------CceeeEEecCCCcEEEEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 013699999999999998763211 1111 122334688999999999999999999999997543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=199.55 Aligned_cols=222 Identities=19% Similarity=0.270 Sum_probs=180.5
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC--CCCeEEEEEecCCCcEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~ 479 (1101)
+...|.+.|..+...-.|++|||++.|++|+|+.+..+.....+.+|.||.++|..++|.. .|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 5678999999999999999999999999999999998877677779999999999999987 677 899999999999
Q ss_pred EEeCCCCce--EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC---ceeeecCCCCceeEEEEccC---
Q 001318 480 VWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSAD--- 551 (1101)
Q Consensus 480 iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~--- 551 (1101)
||.-++|+- ...+..|...|++++|.|..-|-.|++++.||.|.+.+.+... .......|.-.|+++++.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999877743 4566789999999999999999999999999999999988752 22345667788999999886
Q ss_pred CceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC----CEEEEEeCCC
Q 001318 552 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN 627 (1101)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg 627 (1101)
|...-.+... .-+.|++|+.|..|+||+..+++-+..-...+|...|+.++|.|.- .+|++++.||
T Consensus 164 g~~~~~~~~~----------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 164 GSLVDQGPAA----------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred ccccccCccc----------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 3211111000 0246999999999999999887543322234556689999999953 5899999999
Q ss_pred cEEEEEec
Q 001318 628 GIKILATS 635 (1101)
Q Consensus 628 ~i~iw~~~ 635 (1101)
++.||...
T Consensus 234 ~viIwt~~ 241 (299)
T KOG1332|consen 234 TVIIWTKD 241 (299)
T ss_pred cEEEEEec
Confidence 99999765
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-20 Score=207.22 Aligned_cols=254 Identities=16% Similarity=0.232 Sum_probs=206.3
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
..|+..-+.++|.|+|.+ |.+++.||.|++|+.......-. .+.-+...|.+++.. +.+
T Consensus 10 yaht~G~t~i~~d~~gef-i~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~~--s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEF-ICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIACY--SNH 68 (933)
T ss_pred hhccCceEEEEEcCCCCE-EEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEeec--ccc
Confidence 358888999999999995 88999999999999876521110 122266777777654 569
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEE
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 501 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 501 (1101)
|++|+.+++|.+|....++.-.. +....-++.+++|+.+|+ +++.||.|-.|++-++.+......+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~i---L~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTI---LARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccce---eeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 99999999999999998764332 333467899999999999 8999999999999999999999999999999999
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
+.|+ +++.+|++.+-||.|++||+.++.....+..-...-.. .....+..++|+|++..++..+.
T Consensus 144 l~~~--p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~-------------~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 144 LSYD--PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF-------------ILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred eeEc--CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc-------------cccceeeeeeecCCCCeEEeecc
Confidence 9974 56689999999999999999987766655432110000 00224556788888888999999
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 582 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
|+.|++|+..+......+........+.+++|+|+|+|||+++.+|.|.|||+.+
T Consensus 209 d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 209 DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999988887665555588999999999999999999999999986
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=215.38 Aligned_cols=281 Identities=12% Similarity=0.170 Sum_probs=225.0
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeecccccc-CCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTER-NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
|..-|.+++++...+++++++. |.|+|||+..... .+.. .+........|+++.+.|
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pvs---------------------qLdcl~rdnyiRSckL~p 475 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVS---------------------QLDCLNRDNYIRSCKLLP 475 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccc---------------------cccccCcccceeeeEecC
Confidence 7788889999999988887764 6899999854311 1110 122223567899999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCcee--eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCe
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 892 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V 892 (1101)
||+.|++|+ -.++.|||+...... .++......+.+++.+| |.++.++++.||.|.|||+.+..+++.|+||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 999999999 688999999865433 33443345678899999 99999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCce
Q 001318 893 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLE 971 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~ 971 (1101)
.||.+++||..|-|||-|.+||.||+.++.+.... + -...|.++-.+|++.+|+++ .++.+.|......+
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqh-----d----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-----D----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhhhh-----h----hhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 99999999999999999999999999987642211 1 11478999999999999997 67788888876554
Q ss_pred eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001318 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1051 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~ 1051 (1101)
.. ..+-|...|.++.|++.|+++++.+.|..+-.|...-|..+...+ ....|. +|..+- |.++||
T Consensus 626 ky---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVl--sCDIS~-ddkyIV 690 (705)
T KOG0639|consen 626 KY---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVL--SCDISF-DDKYIV 690 (705)
T ss_pred ce---eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcce--eeeecc-CceEEE
Confidence 42 234678999999999999999999999999999999998886655 122244 666666 569999
Q ss_pred EEecCCcEEEEec
Q 001318 1052 LGLSDGGVHVFEP 1064 (1101)
Q Consensus 1052 s~~~dg~v~vW~~ 1064 (1101)
||+.|....|+.+
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 9999998888875
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-21 Score=212.60 Aligned_cols=517 Identities=12% Similarity=0.135 Sum_probs=319.4
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC---Ce
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SL 421 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~ 421 (1101)
...-..-.||+|+++++... +..|.||.+.|++++. .+.+|..++..+.+.|.. .+
T Consensus 16 n~~~~~avfSnD~k~l~~~~--~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~ 74 (792)
T KOG1963|consen 16 NGNKSPAVFSNDAKFLFLCT--GNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANY 74 (792)
T ss_pred cceecccccccCCcEEEEee--CCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceE
Confidence 33344557999999765543 4899999999999887 489999999999999854 47
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEc----CCCCeEEEEEecCCCc-EEEEeCCCCceE-------
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLCVITCGDDKT-IKVWDATNGAKQ------- 489 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s----~d~~~~~l~s~~~d~~-i~iwd~~~~~~~------- 489 (1101)
+.+++.||.|++||...+..++. +.. ..++..+.+. .... .+..+..|.. +.-...+..+..
T Consensus 75 ~~~~sl~G~I~vwd~~~~~Llkt---~~~-~~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t 148 (792)
T KOG1963|consen 75 LIVCSLDGTIRVWDWSDGELLKT---FDN-NLPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLAT 148 (792)
T ss_pred EEEEecCccEEEecCCCcEEEEE---Eec-CCceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeee
Confidence 78999999999999999987763 222 2233333332 1121 1111111111 111111111111
Q ss_pred ------EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCc
Q 001318 490 ------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563 (1101)
Q Consensus 490 ------~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 563 (1101)
..+.+|.. -.++.+ .+.|. +.....+..+.+|+..... ..... +-..-++...
T Consensus 149 ~~~~~~d~~~~~~~-~~~I~~--~~~ge-~~~i~~~~~~~~~~v~~~~--~~~~~---------------~~~~~~Htf~ 207 (792)
T KOG1963|consen 149 FDSAKGDFLKEHQE-PKSIVD--NNSGE-FKGIVHMCKIHIYFVPKHT--KHTSS---------------RDITVHHTFN 207 (792)
T ss_pred ccccchhhhhhhcC-CccEEE--cCCce-EEEEEEeeeEEEEEecccc--eeecc---------------chhhhhhccc
Confidence 11122322 123333 23333 3333445667888776643 11111 0111122224
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 564 LGVVQFDTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 564 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
+.+.+++|++++++++..||.|.+|.--. +.....-..|.|...|.+++|+++|.+|++|+.+|.+.+|.+.++++.+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf 287 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF 287 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc
Confidence 68889999999999999999999996433 2221111224555689999999999999999999999999999884322
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
+..-. ..--....++|+...+....|+.|.+-...++
T Consensus 288 --LPRLg-----------------------------------------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 288 --LPRLG-----------------------------------------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred --ccccC-----------------------------------------CeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 11111 11123456688888888888999999888766
Q ss_pred CCCccccccccC----ccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc
Q 001318 722 SEPNQCRSLRLP----ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 797 (1101)
Q Consensus 722 ~~~~~~~~~~~~----~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 797 (1101)
........+..+ ......-.+.++++|.-+.++..+..|.+++||+.+...-.. ..+...+...|..
T Consensus 325 ~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~------~~v~~~n~~~~~~--- 395 (792)
T KOG1963|consen 325 EIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK------LQVCDENYSDGDV--- 395 (792)
T ss_pred hhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeee------EEEEeecccCCcc---
Confidence 554444443333 123456678899999777789999999999999865432111 1111111122211
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe---------CC--eEEEEECCCCceee-----EecCCCCCeEEEEEecCCCc-
Q 001318 798 DVTDSNPEEAVPCFALSKNDSYVMSAS---------GG--KISLFNMMTFKTMA-----TFMPPPPAATFLAFHPQDNN- 860 (1101)
Q Consensus 798 ~~~~~~~~~~i~~~~~s~dg~~la~~s---------dg--~i~vwd~~~~~~~~-----~~~~~~~~i~~l~~sp~d~~- 860 (1101)
.+.-.+++++.+..|.++++.. || .+++|-......-. ...+|...+.+.+|.+.-..
T Consensus 396 -----n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~ 470 (792)
T KOG1963|consen 396 -----NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSV 470 (792)
T ss_pred -----eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccc
Confidence 1445678888888999999873 23 37889765433222 23567776666666543444
Q ss_pred EEEEEeccCeEEEEEeecc----------eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeee
Q 001318 861 IIAIGMDDSSIQIYNVRVD----------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 930 (1101)
Q Consensus 861 ~lasg~~dg~v~vwd~~~~----------~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 930 (1101)
..++++.||.++||-+.+. .|...-.-|..++++++|+.||..|+ ++.|++|.+||..+... ...
T Consensus 471 ~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~----l~~ 545 (792)
T KOG1963|consen 471 RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNE----LLC 545 (792)
T ss_pred eeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhh----hhc
Confidence 8999999999999998432 23333234888999999999996555 56788999999988311 111
Q ss_pred cCCCCCCCCCCCeEEEEcC---CCcEEEEEeCCeEEEEEcCCceeee
Q 001318 931 IPTGRTPTAQSDTRVQFHQ---DQIHFLVVHETQLAIFETTKLECVK 974 (1101)
Q Consensus 931 ~~~~~~~~~~~v~~~~~s~---dg~~la~~~d~~v~vwd~~~~~~~~ 974 (1101)
...-. ...+..+.|.. ....+.....+.+.+|++.++...-
T Consensus 546 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 546 TEGSR---NWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccccc---ccchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 11100 01333333333 2223333677889999998887765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=195.71 Aligned_cols=242 Identities=19% Similarity=0.206 Sum_probs=188.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
..+.|+.+.|+|.+.. |++++.||++++||+...+... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4678999999999997 5666799999999998874432 456889999999987 56788
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~ 503 (1101)
+|+.||.|+.+|+.++.... +..|..+|.||.+++... .+++||.|++|++||.+......++. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987654 778999999999998777 79999999999999998866666665 344788776
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 583 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 583 (1101)
. .++.|+.|+.|..+.+||+++........... -+-.++++++-|++.-+++++-||
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~-------------------lkyqtR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESS-------------------LKYQTRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhcccc-------------------ceeEEEEEEEecCCCceEEEeecc
Confidence 4 34689999999999999999876554222111 011445555555556688999999
Q ss_pred cEEEEECCCC----ceeEEEcCCCC-------CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 584 SIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 584 ~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.|.+=.++.. +....|+.|.. .-+|++++|+|--..|++|+.||.|.+||..+.
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 9888666554 33344443322 236899999999889999999999999998776
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=192.81 Aligned_cols=240 Identities=16% Similarity=0.247 Sum_probs=179.6
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCC
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 420 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 420 (1101)
-.|.+.|+++.+.|..-+++++|+.||.|.|||++.......-.+ +. ...|. .....-.+|.-.|..+.|-| |..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~-k~~c~--v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IA-KHKCI--VAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-ee-heeee--ccccCCccceeeeeeeEEeeecCc
Confidence 359999999999996444699999999999999987542110000 00 00011 11113568999999999999 888
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCC-eEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
.+.+++-|.+++|||..+-+... .|+ -.+.|+.-+|||-.. +-++++|..|-.|++.|+.+|.+.+++.||.+.|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred eeecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 99999999999999999866443 222 357788888988654 4367888889999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.++.|+++.+ -.|++|+.||.|++||++...
T Consensus 192 laV~Wsp~~e-~vLatgsaDg~irlWDiRras------------------------------------------------ 222 (397)
T KOG4283|consen 192 LAVEWSPSSE-WVLATGSADGAIRLWDIRRAS------------------------------------------------ 222 (397)
T ss_pred EEEEeccCce-eEEEecCCCceEEEEEeeccc------------------------------------------------
Confidence 9999988765 578999999999999997521
Q ss_pred eCCCcEEEEECCCCceeEEEc-CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 580 GDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
|..++.|...++....++ ...+...|+.++|+.++.++++.+.|..+++|+..+|...+
T Consensus 223 ---gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 223 ---GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ---ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 223333433332222222 22344579999999999999999999999999999884443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-23 Score=209.54 Aligned_cols=234 Identities=16% Similarity=0.166 Sum_probs=185.5
Q ss_pred eeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCe
Q 001318 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 466 (1101)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~ 466 (1101)
.+|.+..+....+..+ -.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||.
T Consensus 64 ~vw~i~k~~~~~q~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs- 136 (476)
T KOG0646|consen 64 HVWEILKKDQVVQYIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS- 136 (476)
T ss_pred cccccCchhhhhhhcc---cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc-
Confidence 4555544433332222 24589999999999999999999999999999999776 5789999999999999999
Q ss_pred EEEEEecCCCcEEEEeCC---------CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec
Q 001318 467 LCVITCGDDKTIKVWDAT---------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 537 (1101)
Q Consensus 467 ~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 537 (1101)
+|+|||.||.|.+|++. +-++++.|..|+-+|+.+...+.+...+++|+|.|.++++||+..+..+.++.
T Consensus 137 -~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 137 -HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred -EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 89999999999999864 34678899999999999988766566799999999999999999876555433
Q ss_pred CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------ceeEEEcC
Q 001318 538 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV----------------QLLTSIDA 601 (1101)
Q Consensus 538 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~ 601 (1101)
.+ ..+.+++++|-+..+++|+++|.|.+.++... ..+..+.+
T Consensus 216 fp----------------------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G 273 (476)
T KOG0646|consen 216 FP----------------------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG 273 (476)
T ss_pred cC----------------------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence 22 25556666777777888888888888776432 23445555
Q ss_pred CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccc
Q 001318 602 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 651 (1101)
Q Consensus 602 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 651 (1101)
|.....|+|++++-||.+|++|+.||.++|||+.+. ++++.+.....++
T Consensus 274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK-QCIRTLQTSKGPV 322 (476)
T ss_pred ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH-HHHHHHhhhcccc
Confidence 655558999999999999999999999999999887 7787776433333
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=222.03 Aligned_cols=251 Identities=16% Similarity=0.197 Sum_probs=203.4
Q ss_pred ccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 736 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
.|....+.++|.|+|..|++++.||.|++|+.......| ..+. .+...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P------------------~ti~------~~g~~v~~ia~-- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP------------------ETID------ISGELVSSIAC-- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC------------------chhh------ccCceeEEEee--
Confidence 488889999999999999999999999999864321110 0000 04555666665
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
++.+|++++ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|++|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 444888888 89999999988766545554567899999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceee
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 973 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~ 973 (1101)
|.|+|.+.+||+.+.||.|++|+++++....................+..++|+|+|..+++ +.|+.|.+|+..+....
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 99999999999999999999999998765443222111111111234578899999655555 89999999999999998
Q ss_pred eeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 974 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 974 ~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
..+....|...+.+++|||+|+|||+++.||.|.|||+++
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 8888777777799999999999999999999999999997
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-21 Score=212.31 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=149.3
Q ss_pred EEEEecCCCEEEEE-e-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC-eEEEEEeecceEeeeec
Q 001318 810 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 810 ~~~~s~dg~~la~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~ 886 (1101)
.++++|+++.++++ . ++.|++||+.+.+.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 45666777766544 3 67888999888777766653 23468899999 899998888765 57788998887765543
Q ss_pred CcccCeeEEEEcCCCCEEEEE-eCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE--EeCCeEE
Q 001318 887 GHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA 963 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~d~~v~ 963 (1101)
. .....+++|++||++|+.+ ..++.|++||+.+++............+ ........++|+|+|+++++ +.++.+.
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 2 2345789999999988544 4689999999998754322111111101 00113357899999998655 4577899
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+||+.+++.+..+. +...+.+++|+|+|++|++++ .++.|+|||+.+++.+.+++
T Consensus 233 v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99999988776543 245789999999999998764 68999999999999998887
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=190.14 Aligned_cols=283 Identities=15% Similarity=0.190 Sum_probs=210.3
Q ss_pred CCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 484 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 484 (1101)
...+.|+.+.|+|.+..|++++.||++++||+....... .-.|..++.+++|.++.. +++|+.||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 346789999999999999999999999999999875333 234899999999998665 8999999999999999
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
++.... +..|..+|.++...+.. ..+++|+-|++|++||.+.......+.... .|.++
T Consensus 84 ~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~------------------ 141 (323)
T KOG1036|consen 84 TGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM------------------ 141 (323)
T ss_pred CCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEE------------------
Confidence 888654 44599999999986444 479999999999999998743333332222 33333
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccc
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+-.++.|++|+.+..+.+||+++...........-.-.++|+++-|++.-.++++-||.|.+=.+... +.....
T Consensus 142 -----~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s-~~~~sk 215 (323)
T KOG1036|consen 142 -----DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS-EEAQSK 215 (323)
T ss_pred -----eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc-hHHhhh
Confidence 33456799999999999999998765543333333345789999998888999999999876444332 100000
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCC
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 724 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 724 (1101)
+ . +|++..
T Consensus 216 k---y-----------aFkCHr---------------------------------------------------------- 223 (323)
T KOG1036|consen 216 K---Y-----------AFKCHR---------------------------------------------------------- 223 (323)
T ss_pred c---e-----------eEEeee----------------------------------------------------------
Confidence 0 0 000000
Q ss_pred ccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCC
Q 001318 725 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 804 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~ 804 (1101)
-+.++. - .
T Consensus 224 ---------------------~~~~~~----------~-----------------------------------------~ 231 (323)
T KOG1036|consen 224 ---------------------LSEKDT----------E-----------------------------------------I 231 (323)
T ss_pred ---------------------cccCCc----------e-----------------------------------------E
Confidence 000000 0 1
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 867 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 867 (1101)
-.+|.+++|+|--..||+|+ ||.|.+||+.+.+.+..+..-...|..++|+. +|..||+|+.
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 23578899999988999998 99999999999999999988888899999999 9999999873
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=205.76 Aligned_cols=296 Identities=16% Similarity=0.260 Sum_probs=215.9
Q ss_pred EEecCC-CcEEEEeCCCCceEEEecCc-ccCeEEEeeeecCCccEEEEEec-CCcEEEEecCCCCceeeecCCCCceeEE
Q 001318 470 ITCGDD-KTIKVWDATNGAKQYIFEGH-EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTM 546 (1101)
Q Consensus 470 ~s~~~d-~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 546 (1101)
.+++.| .++.+||+++|....++++- ...-.++.. -++.+++++.. ...|.+|.+...........-.+
T Consensus 11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~---l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg----- 82 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA---LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG----- 82 (476)
T ss_pred eccCCCCcceeEEecCCCceeEEecCcccccchhhhh---hchhheeeecccCccccccccCchhhhhhhccccc-----
Confidence 334444 45999999999999888764 222122221 12246666654 45788998876544432222233
Q ss_pred EEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC
Q 001318 547 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626 (1101)
Q Consensus 547 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 626 (1101)
++.+++-+|.|.+++.|+..|.|++|.+.+|..+..+..| ...|+|+.|+.||.+|++|+.|
T Consensus 83 ----------------~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 83 ----------------PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred ----------------ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCC
Confidence 4455555666668888889999999999999999998655 4479999999999999999999
Q ss_pred CcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceee
Q 001318 627 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 706 (1101)
Q Consensus 627 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 706 (1101)
|.|.+|.+.+- +.....|.-
T Consensus 145 g~V~vW~l~~l---v~a~~~~~~--------------------------------------------------------- 164 (476)
T KOG0646|consen 145 GAVLVWLLTDL---VSADNDHSV--------------------------------------------------------- 164 (476)
T ss_pred ccEEEEEEEee---cccccCCCc---------------------------------------------------------
Confidence 99999987543 111110000
Q ss_pred ccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCC--CceEEeeecCceEEeeeccccccCCCCceeeeecC
Q 001318 707 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS--GNAILALASNAIHLLWKWQRTERNSSGKATASVAP 784 (1101)
Q Consensus 707 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~--g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 784 (1101)
.-++.| ..|.-.|+.+...+. ..++++++.|.++++||+..
T Consensus 165 ----~p~~~f------------------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~--------------- 207 (476)
T KOG0646|consen 165 ----KPLHIF------------------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL--------------- 207 (476)
T ss_pred ----cceeee------------------ccCcceeEEEEecCCCccceEEEecCCceEEEEEecc---------------
Confidence 011111 237778888877664 45799999999999999843
Q ss_pred ccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCC----------------ceeeEecCCCC
Q 001318 785 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF----------------KTMATFMPPPP 847 (1101)
Q Consensus 785 ~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~----------------~~~~~~~~~~~ 847 (1101)
|.++.... ....+.+++++|-++.+++|+ +|.|.+.++... ..+..+.+|.+
T Consensus 208 -------g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~ 276 (476)
T KOG0646|consen 208 -------GVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN 276 (476)
T ss_pred -------ceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC
Confidence 22222211 567899999999999999998 899998887532 23456788887
Q ss_pred --CeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCC
Q 001318 848 --AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA 900 (1101)
Q Consensus 848 --~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d 900 (1101)
.|+|++++- ||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|=
T Consensus 277 ~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 277 ESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred CcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 899999999 9999999999999999999999999999877899999999654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-22 Score=191.69 Aligned_cols=295 Identities=17% Similarity=0.223 Sum_probs=217.7
Q ss_pred eEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE
Q 001318 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 489 (1101)
Q Consensus 410 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 489 (1101)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999865333 5889999999999999999 7999999999999999999999
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
+.+. ...+|+.+.|++...+..+++- .+..-.+-++..+.. ..+...+++..-. .-....|
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h-----------~~Lp~d~d~dln~------sas~~~f 161 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKH-----------SVLPKDDDGDLNS------SASHGVF 161 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCce-----------eeccCCCcccccc------ccccccc
Confidence 9887 7889999999987765444443 333333333332111 1122222222111 1112258
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 649 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 649 (1101)
++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|+.|+..+.|..||.|++..-... +
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~-----~--- 232 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE-----G--- 232 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc-----C---
Confidence 8899999999999999999999999998887554 246888999999999999999999999987532000 0
Q ss_pred cccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccc
Q 001318 650 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 729 (1101)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 729 (1101)
.++.+. ..
T Consensus 233 -----------------------------------------------------------r~~e~e-----------~~-- 240 (405)
T KOG1273|consen 233 -----------------------------------------------------------RDGEVE-----------PE-- 240 (405)
T ss_pred -----------------------------------------------------------ccCCcC-----------hh--
Confidence 000000 00
Q ss_pred cccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCee
Q 001318 730 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 809 (1101)
Q Consensus 730 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~ 809 (1101)
| ++-|+ -....-.
T Consensus 241 -------~-----------------------------------------------K~qDv-------------VNk~~Wk 253 (405)
T KOG1273|consen 241 -------H-----------------------------------------------KLQDV-------------VNKLQWK 253 (405)
T ss_pred -------H-----------------------------------------------HHHHH-------------Hhhhhhh
Confidence 0 00000 0122234
Q ss_pred EEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 810 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
+++||.+|.|++.++ ...++||....|.+++.+.|.. .....+.|+| -...+++- ..|.|+||....
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence 688999999998887 4779999999999999999887 4577899999 66677766 789999998653
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=214.68 Aligned_cols=433 Identities=15% Similarity=0.158 Sum_probs=276.4
Q ss_pred EEEec---CCCeEEEEEcCCeEEEEEccCCcee---eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC
Q 001318 413 VIWSP---DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 486 (1101)
Q Consensus 413 l~~sp---dg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 486 (1101)
..|++ ....||.+..||.|.++|.....-- +++..+..|...|..+.|.| |+. .|++++.|.++++||++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeeccc
Confidence 56665 4567899999999999998764311 22345668999999999999 544 7999999999999999999
Q ss_pred ceEEE--ecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 487 AKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 487 ~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
+++.. +.||.+.|.++||.+.. ...|++|+.||.|.+||++...... +..... +++..|...+
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~-~e~~~~------------~~~~~~n~~p- 197 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDA-LEEFDN------------RIYGRHNTAP- 197 (720)
T ss_pred eeecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhh-HHHHhh------------hhhccccCCC-
Confidence 98876 89999999999998654 4689999999999999998643110 000000 0000000000
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCe---EEEccCCCEEEEEeC-CCcEEEEEecCcccc
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIRL 640 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~ 640 (1101)
.|. .. ....++-|-...+ .+.+ +.+..|...||+++. |+.|+|||++.....
T Consensus 198 -----tps--kp----~~kr~~k~kA~s~-------------ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 198 -----TPS--KP----LKKRIRKWKAASN-------------TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred -----CCC--ch----hhccccccccccC-------------ceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 000 00 0011222222111 2333 556678888998887 999999999876332
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
.+.-.....
T Consensus 254 ~r~ep~~~~----------------------------------------------------------------------- 262 (720)
T KOG0321|consen 254 YRQEPRGSD----------------------------------------------------------------------- 262 (720)
T ss_pred cccCCCccc-----------------------------------------------------------------------
Confidence 221100000
Q ss_pred cCCCccccccccCc-cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 721 LSEPNQCRSLRLPE-NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
.++. ....-.+.++.....|.+|++.+.|+.|++|++......+.+... |.+
T Consensus 263 ----------~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s------------g~~----- 315 (720)
T KOG0321|consen 263 ----------KYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS------------GKL----- 315 (720)
T ss_pred ----------CccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc------------Ccc-----
Confidence 0000 002346778888888999999999999999998665443332211 110
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce-eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
....-..-..+||+.++++|+ |...++|.+.+.+. ...+.+|.-+|++++|.|..-.-+|++++|-.++||++.
T Consensus 316 ----~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 316 ----NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ----cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 111222345789999999999 99999999987654 455788999999999999766778888999999999996
Q ss_pred cce--------------EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCe
Q 001318 878 VDE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 943 (1101)
Q Consensus 878 ~~~--------------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 943 (1101)
.+- ....+++|...+..+.++-.+.+.... .+..++|... .
T Consensus 392 ~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP-----------------------~ 446 (720)
T KOG0321|consen 392 NGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP-----------------------V 446 (720)
T ss_pred Cchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc-----------------------c
Confidence 542 223445666666666555443332221 3445555432 3
Q ss_pred EEEEcCCCcEEEEE---e--CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEc-----------CCeEE
Q 001318 944 RVQFHQDQIHFLVV---H--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATVC 1007 (1101)
Q Consensus 944 ~~~~s~dg~~la~~---~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~-----------dg~v~ 1007 (1101)
.++..|++.-...+ . .-.|...+....+........+|-..|....+++-+..+++.+. ++.+.
T Consensus 447 s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~ 526 (720)
T KOG0321|consen 447 SLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVN 526 (720)
T ss_pred chhcCcCCcccccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCccccc
Confidence 34444444444331 1 12344555544444433333456677777778777777888887 88888
Q ss_pred EEEcCC
Q 001318 1008 VFSAAN 1013 (1101)
Q Consensus 1008 vwd~~~ 1013 (1101)
+|....
T Consensus 527 s~~s~l 532 (720)
T KOG0321|consen 527 SPNSSL 532 (720)
T ss_pred cccccc
Confidence 887654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=199.48 Aligned_cols=249 Identities=13% Similarity=0.198 Sum_probs=195.0
Q ss_pred cccceEEEEEcCCCc-eEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 737 RATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
...+|.+.+|.|+|. .+++++....++.||+.+.+.. .......-....+....+|+
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~----------------------k~~~~~g~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT----------------------KLKPPYGVEEKSMERFEVSH 313 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccc----------------------cccCCCCcccchhheeEecC
Confidence 346889999999999 8888888899999988543221 11111111234577889999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc-Cee
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RIT 893 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~-~V~ 893 (1101)
++++|+..+ .|.|.+....+++.+..++ ..+.|..++|+. |++.|.+.+.+|.|++||+....++.++....+ .-+
T Consensus 314 d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt 391 (514)
T KOG2055|consen 314 DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT 391 (514)
T ss_pred CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence 999999998 8999999999999998887 567899999998 888888888999999999999999988864322 236
Q ss_pred EEEEcCCCCEEEEEeCCCceEEEeCCCcccc-cceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE---eCCeEEEEEcCC
Q 001318 894 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTK 969 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~---~d~~v~vwd~~~ 969 (1101)
++|.|++|.+||+|+..|.|.|||.++.... ..+++.....-. ..|+++.|++|+..||.+ ....+++-.+.+
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 7888899999999999999999997652211 111222222111 378999999999999983 567899999999
Q ss_pred ceeeeeccCCC-CCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 970 LECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 970 ~~~~~~~~~~~-h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
......|.... .-+.|+|++|||.|.+||.|..+|.|.+|.+.
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 98888886532 25679999999999999999999999999864
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=187.91 Aligned_cols=246 Identities=17% Similarity=0.248 Sum_probs=187.0
Q ss_pred cccccceEEEEEcCC-CceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE
Q 001318 735 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 813 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~ 813 (1101)
.+|.-.|.++.|-|- .-++.+++-|..+++||.++-+.. .. + ..++.|++-++
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a---------------------~~--F---~me~~VYsham 151 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA---------------------VD--F---KMEGKVYSHAM 151 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceee---------------------EE--e---ecCceeehhhc
Confidence 347888999998884 445667777999999997542110 00 1 14566777777
Q ss_pred ecCCC---EEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeee---
Q 001318 814 SKNDS---YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKL--- 885 (1101)
Q Consensus 814 s~dg~---~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l--- 885 (1101)
||-.. ++|+|. +-+|++-|+.+|...+++.+|.+.|.++.|+|...-.||+|+.||.|++||++.. .+...+
T Consensus 152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h 231 (397)
T KOG4283|consen 152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH 231 (397)
T ss_pred ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence 77543 667777 6789999999999999999999999999999976778899999999999999753 333333
Q ss_pred -----------cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEE
Q 001318 886 -----------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 954 (1101)
Q Consensus 886 -----------~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 954 (1101)
.+|.+.|++++|+.||.++++++.|..+++|+...|+........+...... ..-..+. +.+...+
T Consensus 232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~--~~~~~~~-~~~s~vf 308 (397)
T KOG4283|consen 232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT--SFAVHIQ-SMDSDVF 308 (397)
T ss_pred cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc--cceEEEe-ecccceE
Confidence 3577899999999999999999999999999999887544333222222111 1111233 3333333
Q ss_pred E-EEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001318 955 L-VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 955 a-~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
+ .-.++.+.++++-.+..++.+. .|...|.|.+|.|+=+.+.+|..|+.|..|-.
T Consensus 309 v~~p~~~~lall~~~sgs~ir~l~--~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 309 VLFPNDGSLALLNLLEGSFVRRLS--THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEecCCeEEEEEccCceEEEeee--cccceeeEEeecCchhhhhccccCCccccccc
Confidence 3 3467999999999999999987 67889999999999999999999999999986
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-21 Score=204.00 Aligned_cols=456 Identities=11% Similarity=0.152 Sum_probs=285.8
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 426 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 426 (1101)
.|..++|-|||..|+++++ ..+.|||+..|..+. .+++|.+.|+|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 7899999999998777655 789999999998887 4999999999999999999999999
Q ss_pred cCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeee
Q 001318 427 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 506 (1101)
Q Consensus 427 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~ 506 (1101)
.|..|.+|+-+-...++ + .|.+.|.|+.|+|-.. .|+||+-. ..-+|........+ .+ ....+.+.+|
T Consensus 73 aDK~VI~W~~klEG~Lk----Y-SH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK----Y-SHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee----e-ccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh-hh-hheeEEEeee--
Confidence 99999999976543332 2 5999999999999988 68888753 45688865544322 11 2234555555
Q ss_pred cCCccEEEEEecCCcEEEEecCCCCceeeec---CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC
Q 001318 507 KENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 583 (1101)
Q Consensus 507 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 583 (1101)
..||++++.|-.+|+|.+=+-.. +....+. +.+.+|.+++|+|... .| ....+++.....
T Consensus 141 tnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg---~G-------------~~di~aV~DW~q 203 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSG---EG-------------RNDILAVADWGQ 203 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCC---CC-------------ccceEEEEeccc
Confidence 68889999999999998875443 3333333 3556788888877653 01 113566777778
Q ss_pred cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCccc
Q 001318 584 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 663 (1101)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1101)
++.+|.+. |+.+..-+.-+ ....|+.+.++|.+++.|+.|+.+.+|.- .|.. +-++
T Consensus 204 TLSFy~Ls-G~~Igk~r~L~--FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~Gvr-LGTv------------------- 259 (1081)
T KOG1538|consen 204 TLSFYQLS-GKQIGKDRALN--FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVR-LGTV------------------- 259 (1081)
T ss_pred eeEEEEec-ceeecccccCC--CCchhheeccCCcEEEEccCCCceEEEee-cCeE-Eeec-------------------
Confidence 88888874 55444322221 13568999999999999999999999853 2201 0000
Q ss_pred ccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEE
Q 001318 664 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 743 (1101)
......|..
T Consensus 260 -----------------------------------------------------------------------g~~D~WIWt 268 (1081)
T KOG1538|consen 260 -----------------------------------------------------------------------GEQDSWIWT 268 (1081)
T ss_pred -----------------------------------------------------------------------cccceeEEE
Confidence 003457788
Q ss_pred EEEcCCCceEEeeecCceEEeeeccccccCC---------------------CCc---e---------------ee---e
Q 001318 744 LIFTNSGNAILALASNAIHLLWKWQRTERNS---------------------SGK---A---------------TA---S 781 (1101)
Q Consensus 744 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~---------------------~~~---~---------------~~---~ 781 (1101)
++..|+++.++.++.||+|..|++...+... .++ . ++ .
T Consensus 269 V~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp 348 (1081)
T KOG1538|consen 269 VQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP 348 (1081)
T ss_pred EEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc
Confidence 8888888888888888888888864321000 000 0 00 0
Q ss_pred ecCccccCCCccccccccCC--C-CCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEE--ec
Q 001318 782 VAPQLWQPPSGIMMTNDVTD--S-NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF--HP 856 (1101)
Q Consensus 782 ~~~~lw~~~~g~~~~~~~~~--~-~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~--sp 856 (1101)
..+.++...++.......+. . ...-...-+. -.+..++.+.+..+..+|...-. .+... -.+-|.-+.. -|
T Consensus 349 eki~iYel~se~~~~mhY~v~ekI~kkf~cSLlV--Vc~~HiVlCqekrLqClDF~Gvk-~ReW~-M~S~iRYikV~GGP 424 (1081)
T KOG1538|consen 349 EKILIYELYSEDLSDMHYRVKEKIIKKFECSLLV--VCANHIVLCQEKRLQCLDFSGVK-EREWQ-MESLIRYIKVIGGP 424 (1081)
T ss_pred ceEEEEeccccccccchhHHHHHHHhhccceEEE--EEcCeEEEEcccceeeecccchh-hhhhh-HHHHHHhhhhhcCC
Confidence 01223333222211100000 0 0000011111 12345566666677777764211 11100 0011111111 12
Q ss_pred CCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCC
Q 001318 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 936 (1101)
Q Consensus 857 ~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 936 (1101)
.+..-|+.|..||.|+-.=+.+.-.+- +......|.|+..+...+.||+....++..++|+.+++. +.+.+
T Consensus 425 ~gREgL~vGlknGqV~kiF~dN~~PiL-l~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp---- 495 (1081)
T KOG1538|consen 425 PGREGLLVGLKNGQVLKIFVDNLFPIL-LLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP---- 495 (1081)
T ss_pred CCcceeEEEecCCcEEEEEecCCchhh-eecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC----
Confidence 255678889888877544344332222 233456799999999999999999999999999999653 22222
Q ss_pred CCCCCCeEEEEcCCCcEEEE-EeCCeEEE
Q 001318 937 PTAQSDTRVQFHQDQIHFLV-VHETQLAI 964 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg~~la~-~~d~~v~v 964 (1101)
.+.+++|.....-+.+ +..|.+.|
T Consensus 496 ----g~nSV~wNT~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 496 ----GANSVAWNTQCEDMLCFTGGGYLNV 520 (1081)
T ss_pred ----CCceEEeeccccceEEEecCCceEE
Confidence 5688888876554444 44454433
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=205.60 Aligned_cols=294 Identities=12% Similarity=0.138 Sum_probs=205.1
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
+..+++++.|+.|++||+.+++.+. .+..| ..+.+++|+|+++. ++++++.++.|++||..+++.+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~-~~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVG-QRPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---EEECC-CCCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence 3578899999999999999987655 34444 34678999999984 346778899999999999998887765544
Q ss_pred eEEEeeeecCCccEEE-EEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 499 VYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
+..++|+ ++++.++ +++.|+.|++||+.+.+....+... . ....++++|++.+++
T Consensus 75 ~~~~~~~--~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~---------------------~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 75 PELFALH--PNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-V---------------------EPEGMAVSPDGKIVV 130 (300)
T ss_pred ccEEEEC--CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-C---------------------CcceEEECCCCCEEE
Confidence 4556664 4556554 4566899999999875544333211 1 223456666667788
Q ss_pred EEeCCC-cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCccccccccccccccccccC
Q 001318 578 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTS 655 (1101)
Q Consensus 578 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 655 (1101)
++..++ .+.+||..+++.+..+.... ...+++|++++++|++++ .++.|++||+.++ +..+.+..
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~--------- 197 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITF--------- 197 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeee---------
Confidence 877664 56778998887766554322 356799999999886554 5899999998776 22211100
Q ss_pred CCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcc
Q 001318 656 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 735 (1101)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 735 (1101)
T Consensus 198 -------------------------------------------------------------------------------- 197 (300)
T TIGR03866 198 -------------------------------------------------------------------------------- 197 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 736 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
...+. .. .......++|+|
T Consensus 198 -----------~~~~~------~~--------------------------------------------~~~~~~~i~~s~ 216 (300)
T TIGR03866 198 -----------EIPGV------HP--------------------------------------------EAVQPVGIKLTK 216 (300)
T ss_pred -----------ccccc------cc--------------------------------------------ccCCccceEECC
Confidence 00000 00 011123467788
Q ss_pred CCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEE-eccCeEEEEEeecceEeeeecCcccCe
Q 001318 816 NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRI 892 (1101)
Q Consensus 816 dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~V 892 (1101)
++++++++. ++.+.+||+.+++....+. +...+.+++|+| ++++|+++ ..+|.|++||+.+++++..+... ...
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~ 293 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP 293 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence 888755543 6779999998888776553 345789999999 88888776 56899999999999999998755 555
Q ss_pred eEEEEcC
Q 001318 893 TGLAFSH 899 (1101)
Q Consensus 893 ~~l~~s~ 899 (1101)
++++|+|
T Consensus 294 ~~~~~~~ 300 (300)
T TIGR03866 294 WGVVVRP 300 (300)
T ss_pred ceeEeCC
Confidence 8888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=197.86 Aligned_cols=285 Identities=16% Similarity=0.231 Sum_probs=215.5
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEecCcc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~ 638 (1101)
+.|+++.|+|....+++++.|+.++||.++.. ..++.+.... .++.+++|.|+|. .+++++....++.||+.+.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a- 290 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA- 290 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecCCCceEEEecccceEEEEeecccc-
Confidence 47888888999899999999999999988643 3455554433 3789999999999 8999999999999999776
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
+..+ +.+..
T Consensus 291 k~~k-------------------~~~~~---------------------------------------------------- 299 (514)
T KOG2055|consen 291 KVTK-------------------LKPPY---------------------------------------------------- 299 (514)
T ss_pred cccc-------------------ccCCC----------------------------------------------------
Confidence 2111 00000
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
......+..+.+++++++|+..|..|.|.+... .++..+...
T Consensus 300 ----------------g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha----------------------kT~eli~s~ 341 (514)
T KOG2055|consen 300 ----------------GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA----------------------KTKELITSF 341 (514)
T ss_pred ----------------CcccchhheeEecCCCCeEEEcccCceEEeehh----------------------hhhhhhhee
Confidence 002245667888999999999999999987644 333333221
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCC-CeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 799 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 799 ~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
.-.+.|..++|+.|++.|++.+ +|.|++||+....+++++....+ .-++++.|+ ++.|||+|+..|.|-|||.
T Consensus 342 ----KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 342 ----KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred ----eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEecc
Confidence 1467899999999999877766 89999999999999988864322 346788888 8999999999999999997
Q ss_pred ec------ceEeeeecCcccCeeEEEEcCCCCEEEEEeC--CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEc
Q 001318 877 RV------DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 948 (1101)
Q Consensus 877 ~~------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 948 (1101)
.+ .+++..+..-...|+++.|++|++.||.+|. +..+++-.+.+... ..-.......-+.|++++||
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-----FsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV-----FSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee-----eccCCCCCCcccceEEEEec
Confidence 64 3566666667788999999999999987774 56789888876332 11111112222578999999
Q ss_pred CCCcEEEEE-eCCeEEEEEcC
Q 001318 949 QDQIHFLVV-HETQLAIFETT 968 (1101)
Q Consensus 949 ~dg~~la~~-~d~~v~vwd~~ 968 (1101)
|.|.++|++ .+|++.+|.+.
T Consensus 492 P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCceEEeecCCCceeeEeec
Confidence 999999997 77899999874
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-21 Score=202.12 Aligned_cols=313 Identities=17% Similarity=0.209 Sum_probs=228.9
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
...+.||.+.|.+|...|.|. .|++|+.||+|+||.+.+|.|++++. ..+.|.|++|++.++...|+.+-. ..+.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~i 468 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLI 468 (733)
T ss_pred eeeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEE
Confidence 345789999999999999998 89999999999999999999999887 567899999999888655655544 44555
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE----eCCCcEEEEECCCCce-----
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----- 595 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~----- 595 (1101)
-+..-+..+.... ....|.++ ..++.+..|.-.....
T Consensus 469 vnp~~G~~~e~~~----------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v 514 (733)
T KOG0650|consen 469 VNPIFGDRLEVGP----------------------------------TKELLASAPNESEPDAAVVTWSRASLDELEKGV 514 (733)
T ss_pred eCccccchhhhcc----------------------------------hhhhhhcCCCccCCcccceeechhhhhhhccce
Confidence 5433221111000 00112222 2356777886542211
Q ss_pred eEEEcCCCCCCCcCeEEEccCCCEEEEEeCC---CcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhh
Q 001318 596 LTSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAA 672 (1101)
Q Consensus 596 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1101)
...+. +...|..+.|+..|.||++..-+ ..|.|.++... ..... |
T Consensus 515 ~~~I~---~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~-~sQ~P------------------F---------- 562 (733)
T KOG0650|consen 515 CIVIK---HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR-KSQSP------------------F---------- 562 (733)
T ss_pred EEEEe---cCCccceeeeecCCceEEEeccCCCcceEEEEecccc-cccCc------------------h----------
Confidence 12222 34469999999999999987654 44666655433 11000 0
Q ss_pred hcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCce
Q 001318 673 ATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 752 (1101)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 752 (1101)
....+.|.++.|+|...+
T Consensus 563 --------------------------------------------------------------~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 563 --------------------------------------------------------------RKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred --------------------------------------------------------------hhcCCceeEEEecCCCce
Confidence 114467889999999998
Q ss_pred EEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEE
Q 001318 753 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF 831 (1101)
Q Consensus 753 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vw 831 (1101)
+++++.. .|+|||+. .+.++...+. ....|..++++|.|..|+.++ |+.+..|
T Consensus 581 lfVaTq~-~vRiYdL~----------------------kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~Wf 634 (733)
T KOG0650|consen 581 LFVATQR-SVRIYDLS----------------------KQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWF 634 (733)
T ss_pred EEEEecc-ceEEEehh----------------------HHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEE
Confidence 8888776 67888763 3333333333 366789999999999999999 9999999
Q ss_pred ECCC-CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee------cc---eEeeeecCcccC----eeEEEE
Q 001318 832 NMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR------VD---EVKSKLKGHSKR----ITGLAF 897 (1101)
Q Consensus 832 d~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~------~~---~~~~~l~~h~~~----V~~l~~ 897 (1101)
|+.- .+..+++..|...+++|+|++ .-.++|+|+.||++.|+.-. .. -.+..+.+|... |..+.|
T Consensus 635 DldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w 713 (733)
T KOG0650|consen 635 DLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW 713 (733)
T ss_pred EcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecc
Confidence 9974 356788899999999999999 78899999999999998532 11 245778899876 999999
Q ss_pred cCCCCEEEEEeCCCceEEE
Q 001318 898 SHALNVLVSSGADSQLCVW 916 (1101)
Q Consensus 898 s~dg~~l~s~s~D~~v~iw 916 (1101)
+|...+|+++|.||+|++|
T Consensus 714 HP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 714 HPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCCCceEEecCCCceEEee
Confidence 9999999999999999998
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=200.11 Aligned_cols=210 Identities=19% Similarity=0.308 Sum_probs=172.4
Q ss_pred ccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccCCcee-------eeeeeeccccCCeeEEEEcCCCCeEEEEEecC
Q 001318 403 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV-------RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474 (1101)
Q Consensus 403 ~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~-------~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~ 474 (1101)
...|.+.|..+..-| +...+|+.+..+.|.|||+.+.... .+..+|.||.+.=+.++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 467999999999999 5566777888999999998754322 223368899998888999998776 7999999
Q ss_pred CCcEEEEeCCCCc-------eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecC--CCCceeeecCCCCceeE
Q 001318 475 DKTIKVWDATNGA-------KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEAPGRWCTT 545 (1101)
Q Consensus 475 d~~i~iwd~~~~~-------~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~v~~ 545 (1101)
|++|++||+.... ....+.+|...|..++|++... .++.+++.|+.+.+||++ +.+.......|...+.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999997543 2457889999999999988655 689999999999999999 45555666778888888
Q ss_pred EEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCCcCeEEEcc-CCCEEEEE
Q 001318 546 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVS 623 (1101)
Q Consensus 546 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~ 623 (1101)
++|+|-+. ..|++|+.|++|.+||+++. +++.++.+|. ..|.+|.|+| ....|+++
T Consensus 278 ~~fnp~~~--------------------~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~--dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 278 VAFNPFNE--------------------FILATGSADKTVALWDLRNLNKPLHTFEGHE--DEVFQVEWSPHNETVLASS 335 (422)
T ss_pred EEeCCCCC--------------------ceEEeccCCCcEEEeechhcccCceeccCCC--cceEEEEeCCCCCceeEec
Confidence 88877665 56888999999999999875 4567777554 4799999999 56789999
Q ss_pred eCCCcEEEEEecC
Q 001318 624 TNDNGIKILATSD 636 (1101)
Q Consensus 624 ~~dg~i~iw~~~~ 636 (1101)
+.|+.+.+||+..
T Consensus 336 g~D~rl~vWDls~ 348 (422)
T KOG0264|consen 336 GTDRRLNVWDLSR 348 (422)
T ss_pred ccCCcEEEEeccc
Confidence 9999999999864
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-19 Score=192.13 Aligned_cols=174 Identities=13% Similarity=0.214 Sum_probs=129.4
Q ss_pred CeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
.|..++|-|||..|+.+.. ..+.+||...|..+. ++++|.+.|+|++|+.||+ .+++|+.|+.|.+|..+-..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klEG- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLEG- 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccccc-
Confidence 8999999999999887754 459999999998776 7999999999999999999 79999999999999854322
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
+-.+ .|.+.|.|+.|+|-. +.|++++. ...-+|........ .......+.+++
T Consensus 87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsL-sdFglWS~~qK~V~-----------------------K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 87 ILKY-SHNDAIQCMSFNPIT--HQLASCSL-SDFGLWSPEQKSVS-----------------------KHKSSSRIICCS 139 (1081)
T ss_pred eeee-ccCCeeeEeecCchH--HHhhhcch-hhccccChhhhhHH-----------------------hhhhheeEEEee
Confidence 2233 399999999986654 68888876 34566755432111 111112455666
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-CCCCCCCcCeEEEccCC
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDG 617 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~ 617 (1101)
|..||.+++.|-.+|+|.+-+.. ++....+. ..+...+|.+++|+|..
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCC
Confidence 77777799999999999998754 44444443 33344678999999854
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-20 Score=180.04 Aligned_cols=268 Identities=19% Similarity=0.373 Sum_probs=188.4
Q ss_pred ccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC----ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 449 ~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
.+|.+-|.++.|.+-|+ .+++|+.|++|+|||..+. .+....+.|.+.|..+.|.+..-|+.+++++.|+++.+
T Consensus 10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 47999999999999999 6999999999999997543 35567789999999999998888999999999999999
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 604 (1101)
|.-.. ..+..+ =+-|.. ..++. ..
T Consensus 88 WEE~~----~~~~~~---------------------------------------------~~~Wv~-----~ttl~--Ds 111 (361)
T KOG2445|consen 88 WEEQE----KSEEAH---------------------------------------------GRRWVR-----RTTLV--DS 111 (361)
T ss_pred eeecc----cccccc---------------------------------------------cceeEE-----EEEee--cC
Confidence 95321 111111 011221 11221 22
Q ss_pred CCCcCeEEEcc--CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 605 LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 605 ~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
...|+++.|.| -|-.|++++.||.+|||+..+..
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-------------------------------------------- 147 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-------------------------------------------- 147 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------------------------------
Confidence 23588999999 57899999999999999875541
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceE
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 762 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 762 (1101)
.+.-|.+.. ++..+..|...
T Consensus 148 -----------------------------nLs~W~Lq~-----Ei~~~~~pp~~-------------------------- 167 (361)
T KOG2445|consen 148 -----------------------------NLSQWTLQH-----EIQNVIDPPGK-------------------------- 167 (361)
T ss_pred -----------------------------ccccchhhh-----hhhhccCCccc--------------------------
Confidence 112222221 00000000001
Q ss_pred EeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC---CCEEEEEeCC------eEEEEEC
Q 001318 763 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN---DSYVMSASGG------KISLFNM 833 (1101)
Q Consensus 763 ~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d---g~~la~~sdg------~i~vwd~ 833 (1101)
+.....|+.|++. ..+||+|+|. .+.||..
T Consensus 168 -----------------------------------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 168 -----------------------------------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred -----------------------------------------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 2222333333321 2356666643 6777776
Q ss_pred CCC----ceeeEecCCCCCeEEEEEecCCC---cEEEEEeccCeEEEEEeecc--------------------eEeeeec
Q 001318 834 MTF----KTMATFMPPPPAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVD--------------------EVKSKLK 886 (1101)
Q Consensus 834 ~~~----~~~~~~~~~~~~i~~l~~sp~d~---~~lasg~~dg~v~vwd~~~~--------------------~~~~~l~ 886 (1101)
..+ ..+.++.+|...|+.++|.|.-| .+||+++.|| |+||.+... +.+..+.
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 533 34556789999999999999644 5899999999 999998731 2456678
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
+|.+.|+.+.|.--|..|++.|.||.||+|...-
T Consensus 286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9999999999999999999999999999997654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-20 Score=180.65 Aligned_cols=274 Identities=12% Similarity=0.182 Sum_probs=207.0
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 414 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 414 (1101)
|..+..++.+.. -.|+.|++.|.+ ||+|..||.|.|||+.|...-. ++.+|..+|++++
T Consensus 14 PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl~ 72 (405)
T KOG1273|consen 14 PEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSLC 72 (405)
T ss_pred hHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeEEE
Confidence 555566777666 899999999995 9999999999999999865332 6899999999999
Q ss_pred EecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec-
Q 001318 415 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE- 493 (1101)
Q Consensus 415 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 493 (1101)
||+||+.|+|+|.|..|++||+..|.+++++ . ...+|+.+.|.|-..+..++ .-.+..-.+-++..++.. .+.
T Consensus 73 WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-r---f~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~-~Lp~ 146 (405)
T KOG1273|consen 73 WSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-R---FDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHS-VLPK 146 (405)
T ss_pred ecCCCCEeeeecCCceeEEEeccCCCceeEE-E---ccCccceeeeccccCCeEEE-EEecCCcEEEEecCCcee-eccC
Confidence 9999999999999999999999999877644 2 46899999999987763444 444444555555543221 111
Q ss_pred CcccCeE--EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCC-CceeEEEEccCCceEEeccccC--------
Q 001318 494 GHEAPVY--SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKR-------- 562 (1101)
Q Consensus 494 ~h~~~v~--~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~-------- 562 (1101)
...+..+ .-+-.++..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++....+.
T Consensus 147 d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 1111111 1111246777999999999999999999988887776665 7788888888887444333222
Q ss_pred ------------------------ceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC
Q 001318 563 ------------------------SLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 617 (1101)
Q Consensus 563 ------------------------~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 617 (1101)
....++|+.+|.++++++ .-..++||.-..|.+++.+.+..+. ....+.|+|-.
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~whp~r 305 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVNWHPVR 305 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecccccce
Confidence 233578999999998877 4567999999999999999876542 46778999988
Q ss_pred CEEEEEeCCCcEEEEEecCc
Q 001318 618 CLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 618 ~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..+++- ..|.+++|.....
T Consensus 306 p~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 306 PIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeeeec-cCCceEEEEeecc
Confidence 877777 6799999987543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-21 Score=202.34 Aligned_cols=290 Identities=12% Similarity=0.111 Sum_probs=207.0
Q ss_pred ceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEE
Q 001318 751 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKIS 829 (1101)
Q Consensus 751 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~ 829 (1101)
..|+.+.++|.|.++|.....+. ++..++.. . ..|...|..+.|.|....|++++ |.+++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~--~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--P--LAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--c--ccccceeEeeccCCCceeEEEccCCceee
Confidence 45677777899999987543332 11111111 1 23999999999999777888887 89999
Q ss_pred EEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce---------------------------
Q 001318 830 LFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------------------------- 880 (1101)
Q Consensus 830 vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~--------------------------- 880 (1101)
+||+++.+++.. +.+|.+.+.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999988877 899999999999999889999999999999999985321
Q ss_pred EeeeecCcccCeeE---EEEcCCCCEEEEEeC-CCceEEEeCCCcccccc-eeeec--CCCCCCCCCCCeEEEEcCCCcE
Q 001318 881 VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKN-RFLQI--PTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~---l~~s~dg~~l~s~s~-D~~v~iwd~~~~~~~~~-~~~~~--~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+........ ..... ...+......+.++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 11223445566666 666789999999998 99999999987432110 01111 1111122245677888888888
Q ss_pred EEE-EeCCeEEEEEcCCceeeeeccCCCCCC--CeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCC
Q 001318 954 FLV-VHETQLAIFETTKLECVKQWVPRESSA--PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1030 (1101)
Q Consensus 954 la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~--~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
|.+ +.|+.|+.|++.+...-......++.. --..-..|||+.+|++|+.|..+++|.+.+.+.--.+. -||
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------~Gh 359 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------LGH 359 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh------hCc
Confidence 888 799999999998765433332223211 11222469999999999999999999998776432221 143
Q ss_pred CCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1031 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1031 ~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
..+ |. +++|.|.+-.-++++++|..+++|++.++-
T Consensus 360 t~e-Vt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 360 TRE-VT--TVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ceE-EE--EEeeccccCCCceeeccCcceEEEeccCch
Confidence 333 44 788888766678999999999999996654
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=217.60 Aligned_cols=232 Identities=16% Similarity=0.249 Sum_probs=203.4
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
|...+.++..-..++.+++|+ |..+-+|.+.....+..+.+|...|.++.|++ +..+|+.|+.+|+|++||++.++.+
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhh
Confidence 677777887777788899998 78888999988888888999999999999999 8999999999999999999999999
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCe
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 961 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~ 961 (1101)
++|.+|...+.+|.|+|-+.+.++++.|+.+++||++.. -+.....+|. ..+..++|+|+|++++.+ .|..
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-----Gc~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-----GCSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhcc-----CceeeecCCc---ceeEEEeecCCCceeeccCCcce
Confidence 999999999999999999999999999999999999852 2455556655 378899999999999994 6799
Q ss_pred EEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEE
Q 001318 962 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1041 (1101)
Q Consensus 962 v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~ 1041 (1101)
++|||+..|+....|. .|...+.++.|.|..-+|++|+.|++|++||+++.+.+...... ..+ |. +.+
T Consensus 178 vki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~---~~~-----v~--~~~ 245 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE---TDG-----VR--SLA 245 (825)
T ss_pred eeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc---cCC-----ce--eee
Confidence 9999999999999887 78999999999999999999999999999999999988766622 222 55 899
Q ss_pred EeCCCCCEEEEEecCC
Q 001318 1042 AHPQEPNEFALGLSDG 1057 (1101)
Q Consensus 1042 ~~~~d~~~l~s~~~dg 1057 (1101)
|.| ++..+++|..+.
T Consensus 246 fn~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 246 FNP-DGKIVLSGEQIS 260 (825)
T ss_pred ecC-CceeeecCchhh
Confidence 999 678787776554
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-22 Score=215.68 Aligned_cols=234 Identities=12% Similarity=0.307 Sum_probs=204.5
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.|...|.|+..-..++ .+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++..+|
T Consensus 26 ~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLL 85 (825)
T ss_pred hhhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhh
Confidence 4888899998866777 59999999999999986544332 378999999999999999999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v 502 (1101)
++|+.+|+|++||++.++.++ +|.||...+..+.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...|..+
T Consensus 86 aagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred cccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 999999999999999988777 7999999999999999999 78999999999999999999999999999999999
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
.| .++|.++++++.|.++++||...++....|..|...+..+.|.| ..-.+.+|+.|
T Consensus 161 ~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp---------------------~e~Lla~Gs~d 217 (825)
T KOG0267|consen 161 RL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP---------------------LEVLLAPGSSD 217 (825)
T ss_pred ee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCc---------------------hhhhhccCCCC
Confidence 98 56779999999999999999999998888888877666665544 44468889999
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 626 (1101)
+++++||+++.+.+...... ...|.+.+|+|++..+++|...
T Consensus 218 ~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 218 RTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchh
Confidence 99999999988887776644 5579999999999999988654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=195.38 Aligned_cols=323 Identities=13% Similarity=0.264 Sum_probs=232.3
Q ss_pred eEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC--EEEEEeCCCcEEE
Q 001318 554 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKI 631 (1101)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i 631 (1101)
.++.||.+ .+.+++.+|.|.+|++|+.||+|+||.+.+|.++.++...+. |.|++|+|.+. .||++.. +.+.|
T Consensus 394 lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~---I~~vaw~P~~~~~vLAvA~~-~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE---IRSVAWNPLSDLCVLAVAVG-ECVLI 468 (733)
T ss_pred eeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce---eEEEEecCCCCceeEEEEec-CceEE
Confidence 34555554 889999999999999999999999999999999999987654 99999999654 4555544 44666
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceee----c
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT----E 707 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~ 707 (1101)
.+..-|.+..... +. ..+.+ .
T Consensus 469 vnp~~G~~~e~~~---t~----------------------------------------------------ell~~~~~~~ 493 (733)
T KOG0650|consen 469 VNPIFGDRLEVGP---TK----------------------------------------------------ELLASAPNES 493 (733)
T ss_pred eCccccchhhhcc---hh----------------------------------------------------hhhhcCCCcc
Confidence 6654441111100 00 00000 1
Q ss_pred cCCCcceeeeccccCCCc--cccccccCccccccceEEEEEcCCCceEEeeecC---ceEEeeeccccccCCCCceeeee
Q 001318 708 ESNDKSKVWKLTELSEPN--QCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASV 782 (1101)
Q Consensus 708 ~~d~~i~~w~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~ 782 (1101)
..+..+..|.-....+.. .+..+. |...|..+.|+..|.+|++...+ ..|.|+++.....
T Consensus 494 ~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s---------- 558 (733)
T KOG0650|consen 494 EPDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS---------- 558 (733)
T ss_pred CCcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------
Confidence 112345556544322211 122222 77899999999999999988764 5677776643211
Q ss_pred cCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEE
Q 001318 783 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 862 (1101)
Q Consensus 783 ~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l 862 (1101)
...+.. ..+.|.++.|+|...+|++++...|++||+.....++.+......|..++++| .|.-|
T Consensus 559 -------------Q~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnl 622 (733)
T KOG0650|consen 559 -------------QSPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNL 622 (733)
T ss_pred -------------cCchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeE
Confidence 011111 46779999999999999999999999999999888888887788899999999 88888
Q ss_pred EEEeccCeEEEEEeec-ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCC
Q 001318 863 AIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 941 (1101)
Q Consensus 863 asg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1101)
+.|+.|+.+..||+.- .+..+++..|...|++|+|++.-.++++|+.||++.|+--.-.. ....
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~-------Dl~q-------- 687 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN-------DLLQ-------- 687 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh-------hhhc--------
Confidence 8999999999999975 46778899999999999999999999999999999988522100 0000
Q ss_pred CeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCC----CCeeEEEEcCCCCEEEEEEcCCeEEEE
Q 001318 942 DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS----APITHATFSCDSQLVYACFLDATVCVF 1009 (1101)
Q Consensus 942 v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~----~~i~~l~~spdg~~l~s~s~dg~v~vw 1009 (1101)
+...+..-...+|. ..|..+.|.|..-+|++++.||+|++|
T Consensus 688 ---------------------------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 ---------------------------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ---------------------------CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 00011111122443 348999999999999999999999998
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=190.38 Aligned_cols=258 Identities=19% Similarity=0.291 Sum_probs=195.2
Q ss_pred CCCCcEEEEEecCCC-eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCe
Q 001318 344 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 421 (1101)
Q Consensus 344 h~~~v~~~~~spdg~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 421 (1101)
+...|++++|+|... .++|+|..-|.|-+||+.+.+......+ .+..|.++|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---------------~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---------------LFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---------------EeccCCccccceEecCCChhh
Confidence 789999999999876 7899999999999999975444332111 4789999999999999 6778
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce-EEEecCcccCeE
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY 500 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 500 (1101)
+.+.|.||+|++-|++++.. .....+..-...+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 99999999999999998642 22223333455788899998888 577777777999999998665 566677888999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCcee----eecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
+++++|-.. .++++++.|++.+|||++...... ....|.. .+....|+|.+..|
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr---------------------sV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR---------------------SVNSAYFSPSGGTL 384 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccc---------------------eeeeeEEcCCCCce
Confidence 999988655 799999999999999998754332 2223333 45555555655679
Q ss_pred EEEeCCCcEEEEECC----CCceeEEEcCCCCC---CCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccc
Q 001318 577 LAAGDDFSIKFWDMD----SVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 642 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 642 (1101)
++.+.|..|+|||.. .-.+..++.+.... -......|.|+..++++|..-..|-|+|-..+ +.+.
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~ 456 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVC 456 (498)
T ss_pred EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEee
Confidence 999999999999983 33444444422211 12345789999999999999999999987666 4333
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=185.02 Aligned_cols=267 Identities=15% Similarity=0.234 Sum_probs=195.0
Q ss_pred CCcceeecccCCCCcEEEEEecCCC-eEEEEEecCCcEEEEeCCCccee-EeeeeeeeecCCCCcccccccccCCCCCeE
Q 001318 334 LPKTVTRTLNQGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVN 411 (1101)
Q Consensus 334 ~~~~~~~~~~h~~~v~~~~~spdg~-~llatg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 411 (1101)
.|........|.+.|+.+.-++-|+ .+.|+=+..|.|.|||+...-.. ..-.+.+-+ +...+...+.+|.+.=+
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 3555556777999999999988753 35666677899999998542111 000000000 11112225789999999
Q ss_pred EEEEec-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC---c
Q 001318 412 RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---A 487 (1101)
Q Consensus 412 ~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~ 487 (1101)
+|+||| .-..|++|.--+.|++|...+|.-......+.+|...|-.++|||..+. +|+|||-||+|+|||++.+ .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 999999 3345778877888999999998765445567889999999999998887 8999999999999999988 3
Q ss_pred eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC---CceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 488 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 488 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
++.+ +.|.+.|+.+.|+... .+|++|+.||++++||++.- ..+..+..|..+|+++.|+|...
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~----------- 360 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED----------- 360 (440)
T ss_pred eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC-----------
Confidence 4444 7899999999996544 49999999999999999863 44557777888888888877665
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCce----------------eEEEcCCCCCCCcCeEEEccC-CCEEEEEeCCC
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKD-GCLLAVSTNDN 627 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg 627 (1101)
..|+++|.|.+|.+||+....- .+.+-.|.+...+..+.|++. ..+|++.+.||
T Consensus 361 ---------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 361 ---------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred ---------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 4688899999999999853221 111222444456788999984 44666666666
Q ss_pred c
Q 001318 628 G 628 (1101)
Q Consensus 628 ~ 628 (1101)
.
T Consensus 432 f 432 (440)
T KOG0302|consen 432 F 432 (440)
T ss_pred e
Confidence 4
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-20 Score=183.48 Aligned_cols=172 Identities=20% Similarity=0.250 Sum_probs=140.7
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
...+|..+.|.+.....+|||+.|..|+||.++.++.-.. .....+ ...+..|...|+++.|+|+|++||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~---------~~~V~y-~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG---------DMKVEY-LSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC---------ceeEEE-eecccCCcceeEEEEEcCCcCeee
Confidence 4578999999998875699999999999999876543220 001111 226899999999999999999999
Q ss_pred EEEcCCeEEEEEcc--------C-----CceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE
Q 001318 424 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 490 (1101)
Q Consensus 424 s~~~d~~i~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 490 (1101)
+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|.++++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999766 3 111233456889999999999999999 89999999999999999999999
Q ss_pred EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC
Q 001318 491 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 529 (1101)
Q Consensus 491 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~ 529 (1101)
.+.+|...|..++|. +-++++++-+.|...+.+.+..
T Consensus 160 ~~~dh~~yvqgvawD--pl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWD--PLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred eccccccccceeecc--hhhhhhhhhccCcccceeeeee
Confidence 999999999999995 4458999999998666665543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=205.13 Aligned_cols=284 Identities=15% Similarity=0.251 Sum_probs=208.9
Q ss_pred CccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcC-CCceEEeeecCceEEeeeccccccCCCCce
Q 001318 700 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKA 778 (1101)
Q Consensus 700 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 778 (1101)
+...++.++. ..++++.+........+....-..+.....+..+.|.. +.++|++++.+|.|.+||+.....
T Consensus 50 ~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------ 122 (839)
T KOG0269|consen 50 DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------ 122 (839)
T ss_pred CcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc------
Confidence 3344444443 45667766654443333221100011112334455553 466789999999999999854210
Q ss_pred eeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC-CEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEec
Q 001318 779 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP 856 (1101)
Q Consensus 779 ~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 856 (1101)
...+ ..+. .|...+.++.|++-. .+|++|+ ||+|++||++...-..++.+....|+.|.|+|
T Consensus 123 -------------nk~l-~~f~--EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 123 -------------NKLL-TVFN--EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred -------------chhh-hHhh--hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 0010 0122 389999999999865 5677888 99999999999888889988888999999999
Q ss_pred CCCcEEEEEeccCeEEEEEeec-ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC
Q 001318 857 QDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR 935 (1101)
Q Consensus 857 ~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 935 (1101)
..+..++++.+.|.+++||++. .++..++.+|.++|.++.|+|++.+|||||.|++|+|||+.+++.....++.+.
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi--- 263 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI--- 263 (839)
T ss_pred CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec---
Confidence 8899999999999999999986 467788899999999999999999999999999999999998766555555443
Q ss_pred CCCCCCCeEEEEcCCCcEE-EE---EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC-CCCEEEEEEcCCeEEEEE
Q 001318 936 TPTAQSDTRVQFHQDQIHF-LV---VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 936 ~~~~~~v~~~~~s~dg~~l-a~---~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp-dg~~l~s~s~dg~v~vwd 1010 (1101)
.++.++.|-|+..+. |+ ..|-.|+|||+...-.... ....|...++.++|-. |-..|.+++.||+|..-.
T Consensus 264 ----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~-t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 264 ----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYA-TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHL 338 (839)
T ss_pred ----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccce-eeeccCccccceeccCCCceeeEeecCccHHHHhh
Confidence 478999999987654 44 2688999999986543322 2237899999999965 566789999999988766
Q ss_pred cCCc
Q 001318 1011 AANL 1014 (1101)
Q Consensus 1011 ~~~~ 1014 (1101)
++++
T Consensus 339 ~kna 342 (839)
T KOG0269|consen 339 FKNA 342 (839)
T ss_pred hhcc
Confidence 5544
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=174.45 Aligned_cols=259 Identities=14% Similarity=0.236 Sum_probs=193.9
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec--CCC
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 420 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 420 (1101)
+|.+-|.|+.|.+-|++ +|||+.|++|.|||.......-.. ......|.+.|..+.|-+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~---------------Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSC---------------TSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEE---------------eeeEEecCCcEEEEEecCccccc
Confidence 58899999999999997 999999999999997544322110 113678999999999977 699
Q ss_pred eEEEEEcCCeEEEEEcc------CCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE-----
Q 001318 421 LFGVAYSRHIVQIYSYH------GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----- 489 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~------~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----- 489 (1101)
.+|+++.|+++.||.-. .+..-....++......|+++.|.|....+.+++++.||.+|||+.-...-+
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 99999999999999752 1222334446777888999999999988779999999999999987654322
Q ss_pred -EEec-------CcccCeEEEeeeecCC-ccEEEEEecC-----CcEEEEecCCCC----ceeeecCCCCceeEEEEccC
Q 001318 490 -YIFE-------GHEAPVYSVCPHHKEN-IQFIFSTALD-----GKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSAD 551 (1101)
Q Consensus 490 -~~~~-------~h~~~v~~v~~~~~~~-~~~l~s~~~d-----g~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~ 551 (1101)
..+. .+..+-.|+.|+++.- ..+|+.|+.+ +.++||...... ...++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2222 3556677888875432 2466766655 478899776544 23356788889999999987
Q ss_pred CceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------------eeEEEc-CCCCCCCcCeEEE
Q 001318 552 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIRF 613 (1101)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~ 613 (1101)
-.+.+ ..+++++.|| |+||++.... .+..+. ..+|...|..+.|
T Consensus 235 ~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 235 IGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred cCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 54322 3588999999 9999987311 122222 2344558999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEec
Q 001318 614 NKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 614 s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
+-.|..|++.+.||.||+|...
T Consensus 297 NmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999754
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=181.75 Aligned_cols=266 Identities=16% Similarity=0.254 Sum_probs=182.4
Q ss_pred cCCCCcEEEEEec----CCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 343 NQGSSPMSMDFHP----VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 343 ~h~~~v~~~~~sp----dg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
.|+.+|..++|.+ +...++|+.+. ..+.+|+......+. .++ ...-..|...-+.++|+-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir--~lq------------~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIR--LLQ------------SYADEDHDESFYTCSWSYD 100 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcccee--eee------------eccCCCCCcceEEEEEEec
Confidence 4889999999985 33335665554 688888876543221 111 1123458888999999885
Q ss_pred C----CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe--
Q 001318 419 G----SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 492 (1101)
Q Consensus 419 g----~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 492 (1101)
. .+||+|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++..++..|
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence 3 479999999999999999988766 58899999999999999988 8999999999999999999999987
Q ss_pred -cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCce-----------EEecc-
Q 001318 493 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-----------TYQGF- 559 (1101)
Q Consensus 493 -~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----------~~~~~- 559 (1101)
.||.+.|.++.|+ .+|.++++++.|.+|++|++...+-...++. +..|++++.. .+...
T Consensus 177 ~egHrdeVLSvD~~--~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~------s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFS--LDGDRIASCGMDHSLKLWRLNVKEFKNKLEL------SITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred cccccCcEEEEEEc--CCCCeeeccCCcceEEEEecChhHHhhhhhh------hcccCCCCccCcCCccccccccccccc
Confidence 5699999999985 5557999999999999999985432221111 1233333321 00000
Q ss_pred -ccCceeEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcee-------------EEEcCCCCCCCcCeEEEccCCCEEEEEe
Q 001318 560 -RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLL-------------TSIDADGGLPASPRIRFNKDGCLLAVST 624 (1101)
Q Consensus 560 -~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~-------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 624 (1101)
+...+.|+.| -|+++++-+-++.|..|.. +-++.+ ..+............+|.|-+++||.|.
T Consensus 249 iHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn 326 (385)
T KOG1034|consen 249 IHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN 326 (385)
T ss_pred cccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence 0112222222 2478899888899999987 222221 1122111111122345566677888888
Q ss_pred CCCcEEEEEecCc
Q 001318 625 NDNGIKILATSDG 637 (1101)
Q Consensus 625 ~dg~i~iw~~~~~ 637 (1101)
..|.|.+||+.+.
T Consensus 327 q~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 327 QSGKVYVWDLDNN 339 (385)
T ss_pred CCCcEEEEECCCC
Confidence 8888888887665
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=191.35 Aligned_cols=254 Identities=13% Similarity=0.169 Sum_probs=190.0
Q ss_pred CCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcc------cccccccCCCCCeEEEEEecC-CCeEEEEEcCC
Q 001318 357 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP------LQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRH 429 (1101)
Q Consensus 357 g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~ 429 (1101)
|+| +|.|+.|..|.|||+.-...+. +...++..... .......+|++.|.+++|+.+ ...||+||.|.
T Consensus 192 gNy-vAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GNY-VAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cce-EEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 564 9999999999999986432221 11111111111 112235589999999999984 66899999999
Q ss_pred eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE-EEecCcccCeEEEeeeecC
Q 001318 430 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSVCPHHKE 508 (1101)
Q Consensus 430 ~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~v~~~~~~ 508 (1101)
+|++||+.++++.. ++..|.+.|.+++|.|.... +|++|+.|++|.+.|.+..... ..++ ..+.|..++|.+..
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHS 341 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCC
Confidence 99999999999766 57789999999999998877 8999999999999999853322 2333 45678889997755
Q ss_pred CccEEEEEecCCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEE
Q 001318 509 NIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 587 (1101)
Q Consensus 509 ~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 587 (1101)
. ..++++..||+|+-+|++.. ++..++..|...|.+++++..-. +++++++.|+.|++
T Consensus 342 e-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------------------~~l~t~s~d~~Vkl 400 (463)
T KOG0270|consen 342 E-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------------------GLLSTASTDKVVKL 400 (463)
T ss_pred c-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------------------cceeeccccceEEE
Confidence 4 57888899999999999987 67888999999999999887665 57899999999999
Q ss_pred EECCCCceeEEEcCCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEecCccccc
Q 001318 588 WDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 588 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
|++..-.........-......|.++.|+- -.++.|+..+.+++||+.+.....
T Consensus 401 w~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred EeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 998765443222211122335667777754 467788888889999998874333
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=180.09 Aligned_cols=301 Identities=16% Similarity=0.217 Sum_probs=206.0
Q ss_pred ccccceEEEEEcC----CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 736 LRATKISRLIFTN----SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 736 ~~~~~i~~l~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
.|..+|..++|++ +...+++......+.+|+..... +..+........+......+
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D~d~~Esfytc 95 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYADEDHDESFYTC 95 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccCCCCCcceEEE
Confidence 3777888898874 33334444455577777763211 11111111122366667777
Q ss_pred EEecCC----CEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-
Q 001318 812 ALSKND----SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL- 885 (1101)
Q Consensus 812 ~~s~dg----~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l- 885 (1101)
+|+-|- -++|+|+ -|.|+|.|+.++++...+.+|...|+.+.|.|.+.++|++++.|..|++|++++..|+..+
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 777543 3677766 7999999999999999999999999999999988899999999999999999999999887
Q ss_pred --cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceee-------------ecCCCCCC-------CCCCCe
Q 001318 886 --KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-------------QIPTGRTP-------TAQSDT 943 (1101)
Q Consensus 886 --~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------------~~~~~~~~-------~~~~v~ 943 (1101)
.+|.+.|.++.|+.+|.+|+|+|.|.++++|++...+....... .....|.+ ....|.
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 67999999999999999999999999999999985332111100 00001100 001222
Q ss_pred EEEEcCCCcEEEE-EeCCeEEEEEcC-CceeeeeccC-----------CCCCCCeeEEE--EcCCCCEEEEEEcCCeEEE
Q 001318 944 RVQFHQDQIHFLV-VHETQLAIFETT-KLECVKQWVP-----------RESSAPITHAT--FSCDSQLVYACFLDATVCV 1008 (1101)
Q Consensus 944 ~~~~s~dg~~la~-~~d~~v~vwd~~-~~~~~~~~~~-----------~~h~~~i~~l~--~spdg~~l~s~s~dg~v~v 1008 (1101)
++.|- |.++++ +.++.|..|..- -.+.+....+ .-....|.-+. |.|-+++||.|...|.|++
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 22221 567777 788899999872 2222111110 01134455554 5566889999999999999
Q ss_pred EEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1009 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1009 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
||++..+....-. +.+...+.-|+ ..+|+. |+.+|+..++|++|.-||..
T Consensus 334 wdL~~~ep~~~tt----l~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPKCTT----LTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCccCce----EEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999887742211 22221233355 788888 78999999999999999864
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-17 Score=191.35 Aligned_cols=371 Identities=25% Similarity=0.424 Sum_probs=269.7
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcc-eeEeeeeeeeecCCCCcccccccccCCC-CCeEEEEE-e
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S 416 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s 416 (1101)
....|...|.++.|.+.+.. ++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 35569999999999999995 8888899999999998876 3321 33322 47777777 8
Q ss_pred cCCC-eEEEEEc-CCeEEEEEccC-CceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC-CCcEEEEeCCCCceEEEe
Q 001318 417 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF 492 (1101)
Q Consensus 417 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~ 492 (1101)
+++. +++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 99999999997 44333 5778999999999999999 6777775 999999999999999999
Q ss_pred cCcccCeEEEeeeecCCcc-EEEEEecCCcEEEEecCCCCcee-eecCCCCceeEEEEccCCceEEeccccCceeEEEEc
Q 001318 493 EGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 570 (1101)
.+|...|.++.|. +++. .+++++.|+.|++||........ .+..+.... ...|+
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~----------------------~~~~~ 250 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV----------------------VSSFS 250 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce----------------------eEeEC
Confidence 9999999999997 5555 55565999999999877444433 233333221 11566
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccc
Q 001318 571 TTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 649 (1101)
Q Consensus 571 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 649 (1101)
+++..+++++.|+.+++|+...... +..+. .+...+.++.|.|++..+++++.|+.+.+|+..+.. ......
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~---- 323 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT---- 323 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee----
Confidence 6666788999999999999987665 44442 334578899999988888889889889999765541 110000
Q ss_pred cccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccc
Q 001318 650 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 729 (1101)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 729 (1101)
T Consensus 324 -------------------------------------------------------------------------------- 323 (466)
T COG2319 324 -------------------------------------------------------------------------------- 323 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCee
Q 001318 730 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 809 (1101)
Q Consensus 730 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~ 809 (1101)
... |...+.
T Consensus 324 ----~~~-------------------------------------------------------------------~~~~~~ 332 (466)
T COG2319 324 ----LKG-------------------------------------------------------------------HEGPVS 332 (466)
T ss_pred ----ecc-------------------------------------------------------------------cCCceE
Confidence 000 222334
Q ss_pred EEEEecCCCEEEEE-e-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEE-EeccCeEEEEEeecceEeeeec
Q 001318 810 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 810 ~~~~s~dg~~la~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las-g~~dg~v~vwd~~~~~~~~~l~ 886 (1101)
.+.+.+++..++.+ . |+.+.+|+.............. .+..+.+++ + ..+.. +..++.+.+|+...........
T Consensus 333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred EEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence 44442122333333 2 5667777777665222222222 288899988 6 55554 7899999999999888777766
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
.+...+....+++++..+++++.++++++|+..+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 5547799999999999999999999999999877
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=201.23 Aligned_cols=270 Identities=13% Similarity=0.192 Sum_probs=198.0
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFG 423 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la 423 (1101)
+....++...++-..++++|- ....|+.+........-.+ ... .-..-.-.+..+.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~~~~~--~~k----------~kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSEKCNH--RFK----------TKQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEecc--cceeeEeeCcccCCcceee--ecc----------cccceeeehhhcccccchhhhhe
Confidence 456677777888776444443 4566666654322111000 000 0001112456677876 788999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~ 503 (1101)
|++..|.|.+||+.....-+....|..|...|+++.|++.... +|++||.||+|++||++..+...++.+....|..|.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222333368899999999999998887 899999999999999999999999999999999999
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
|++.. +..++++...|.+++||++... ....+..|.++|.++.|+| ++.+|++||.|
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP---------------------nr~~lATGGRD 241 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP---------------------NREWLATGGRD 241 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC---------------------CCceeeecCCC
Confidence 98865 5799999999999999998754 4556777777666655555 44689999999
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC-EEEEEe--CCCcEEEEEecCcccccccccccccccc
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVST--NDNGIKILATSDGIRLLRTFENLAYDAS 652 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 652 (1101)
++|+|||+.+.+.......+ ...+|.+|.|-|+.. .|++++ .|-.|+|||++...-+...+..|...+.
T Consensus 242 K~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT 313 (839)
T ss_pred ccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence 99999999866533222211 234688999999655 455543 4788999999988788888888877544
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=181.97 Aligned_cols=314 Identities=12% Similarity=0.147 Sum_probs=225.9
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC----ceeeecCCCCceeEEEEccCCceEEeccc
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGFR 560 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 560 (1101)
+-......+-+.++|++++|+|..+..++++|+.-|.|-+||+.+.+ ....+..|..+|.++.|+|...
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~------- 247 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT------- 247 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-------
Confidence 33344455668889999999999988899999999999999996332 3455677778888888887765
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccc
Q 001318 561 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 561 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
..+++.+.||+|++-|++.+.....+........+.++.|+.+...++.+..=|.+.+||.+++...
T Consensus 248 -------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 248 -------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred -------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 5799999999999999988765444443333345677889888888888888889999999988665
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
+..+.-|...+... +++|.. ..++++++.|++.+|||+..
T Consensus 315 ~~~~~lh~kKI~sv------~~NP~~----------------------------------p~~laT~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 315 YENLRLHKKKITSV------ALNPVC----------------------------------PWFLATASLDQTAKIWDLRQ 354 (498)
T ss_pred chhhhhhhccccee------ecCCCC----------------------------------chheeecccCcceeeeehhh
Confidence 66666665543332 333333 57889999999999999987
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
....... .+ ....|...|.++.|||++-.|++.+.|..|+|||..- +.-|+...+.....-..
T Consensus 355 l~~K~sp-~l--st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--------------~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 355 LRGKASP-FL--STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--------------ISAKDEPLGTIPHNNRT 417 (498)
T ss_pred hcCCCCc-ce--ecccccceeeeeEEcCCCCceEeeccCCceEEeeccc--------------ccccCCccceeeccCcc
Confidence 6654431 11 1234899999999999988899999999999999630 11122222222211000
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCC-CeEE-EEEecCCCcEEEEEeccCeEEEEEee
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATF-LAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~-l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+ .--.....+|.|+..++++|. -..|-|+|-..++.+..+..... .|.+ ..|+|.+..++|-|+..|.|+||--+
T Consensus 418 ~--RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 418 G--RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred c--ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 0 011233468999999999998 67899999998888888755443 5655 48999444466666778899998644
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-19 Score=180.71 Aligned_cols=196 Identities=16% Similarity=0.241 Sum_probs=156.9
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeee------------------ccccCCeeEEEEcCCCCeEEEEEecCCCcEE
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI------------------DAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l------------------~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 479 (1101)
-|+|+|.|+.|..|.|||+.--..+.+..+| .+|++.|.+++|+..-+. +|+|||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 4789999999999999998743333332222 379999999999988877 899999999999
Q ss_pred EEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecc
Q 001318 480 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 559 (1101)
Q Consensus 480 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 559 (1101)
+||+.+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|..++|.+...
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se------ 342 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE------ 342 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc------
Confidence 99999999999999999999999998754 48999999999999999985332211111123345555544443
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCc
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..++++..||+|+-+|++.. +++.+++.|.. .|.++++++ ...++++++.|+.|++|++...
T Consensus 343 --------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 343 --------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred --------------eeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 46778889999999999875 88999988766 799999998 4568899999999999998754
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=182.82 Aligned_cols=210 Identities=17% Similarity=0.266 Sum_probs=166.7
Q ss_pred CceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeE
Q 001318 750 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI 828 (1101)
Q Consensus 750 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i 828 (1101)
..++++++..++|+|||++ .+++...+++ |.+.|+++.+.-.+.|||+++ .|.|
T Consensus 91 S~y~~sgG~~~~Vkiwdl~-----------------------~kl~hr~lkd--h~stvt~v~YN~~DeyiAsvs~gGdi 145 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLR-----------------------AKLIHRFLKD--HQSTVTYVDYNNTDEYIASVSDGGDI 145 (673)
T ss_pred ceeeeccCcCceeeehhhH-----------------------HHHHhhhccC--CcceeEEEEecCCcceeEEeccCCcE
Confidence 3678899999999999873 2333444555 899999999999999999999 6889
Q ss_pred EEEECCCCceeeEecCCCC-CeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-cCcccCeeEEEEcCCC-CEEE
Q 001318 829 SLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHAL-NVLV 905 (1101)
Q Consensus 829 ~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~dg-~~l~ 905 (1101)
.|..+.++....+|....+ .|+-+.|+|....+|.+++.+|.|.+||+.....+..+ ..|..+...|+|+|.. .+||
T Consensus 146 iih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 146 IIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred EEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 9999999888888875534 46689999966678888999999999999877666554 6799999999999965 6788
Q ss_pred EEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCC
Q 001318 906 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP 984 (1101)
Q Consensus 906 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~ 984 (1101)
+.|.|+.|.+||+..... ..++ ... .+...++|+++|.+|+++ ..|.|..||+...+..-.. ...|...
T Consensus 226 sVG~Dkki~~yD~~s~~s--~~~l--~y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v-~sah~~s 295 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQAS--TDRL--TYS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV-RSAHDAS 295 (673)
T ss_pred EecccceEEEeecccccc--ccee--eec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceE-eeecccc
Confidence 999999999999986332 1122 112 267899999999999995 8899999999876543222 2378889
Q ss_pred eeEEEEcCCC
Q 001318 985 ITHATFSCDS 994 (1101)
Q Consensus 985 i~~l~~spdg 994 (1101)
|++++|-|..
T Consensus 296 Vt~vafq~s~ 305 (673)
T KOG4378|consen 296 VTRVAFQPSP 305 (673)
T ss_pred eeEEEeeecc
Confidence 9999997654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-16 Score=184.97 Aligned_cols=368 Identities=22% Similarity=0.390 Sum_probs=268.7
Q ss_pred eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc-eEEEecCccc-CeEEEeeeecCCcc-EEEEEec-CCcEE
Q 001318 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKIK 523 (1101)
Q Consensus 448 l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~v~~~~~~~~~-~l~s~~~-dg~i~ 523 (1101)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 567899999999999999 78888899999999998887 6777776443 67777764 55555 5555444 99999
Q ss_pred EEecCC-CCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEcC
Q 001318 524 AWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 524 ~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~ 601 (1101)
+|+... ......+..|...+..+.|++++ ..+++++. |+.+++|+...+..+..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDG---------------------KLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCC---------------------CEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 999987 55566666666666666655555 45777775 99999999999888888876
Q ss_pred CCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEecCcccccc-ccccccccccccCCCCCCcccccchhhhhhhcccccc
Q 001318 602 DGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 679 (1101)
Q Consensus 602 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
+ ...+.+++|+|++. .+++++.|+.+++||...+ .... .+.+
T Consensus 197 ~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~--------------------------------- 240 (466)
T COG2319 197 H--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSG--------------------------------- 240 (466)
T ss_pred C--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCC---------------------------------
Confidence 4 44799999999998 5555589999999965533 1111 0000
Q ss_pred cccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC
Q 001318 680 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 759 (1101)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 759 (1101)
T Consensus 241 -------------------------------------------------------------------------------- 240 (466)
T COG2319 241 -------------------------------------------------------------------------------- 240 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce
Q 001318 760 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 838 (1101)
Q Consensus 760 g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 838 (1101)
|.... ...|++++.++++++ |+.+++|+......
T Consensus 241 --------------------------------------------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 241 --------------------------------------------HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred --------------------------------------------CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 12221 114555555555555 67777777765443
Q ss_pred -eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec--CcccCeeEEEEcCCCCEEEEE-eCCCceE
Q 001318 839 -MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQLC 914 (1101)
Q Consensus 839 -~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~l~s~-s~D~~v~ 914 (1101)
...+.+|...+.++.|+| ++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+.
T Consensus 276 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 276 LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 344456788899999999 77788889999999999998877666665 788889999994333566655 6889999
Q ss_pred EEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE--EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC
Q 001318 915 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 992 (1101)
Q Consensus 915 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp 992 (1101)
+|++.... ........ ..+..+.+++ ...... ..++.+.+|+............. ...+....+++
T Consensus 355 ~~~~~~~~----~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 422 (466)
T COG2319 355 LWDLRTGK----PLKTLEGH-----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH--TSRVTSLDFSP 422 (466)
T ss_pred eeecCCCc----eeEEecCC-----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCC--CCcEEEEEECC
Confidence 99998854 11111111 1267888888 544443 47889999999998887766521 17899999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCC
Q 001318 993 DSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 993 dg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
++..+++++.++.+++|+..+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 423 DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCcEEEEecCCCcEEEEeccC
Confidence 999999999999999999988
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-19 Score=180.60 Aligned_cols=292 Identities=12% Similarity=0.181 Sum_probs=212.0
Q ss_pred eeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCce-EEeeecCceEEeeeccccccCCCCceeeee
Q 001318 704 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASV 782 (1101)
Q Consensus 704 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 782 (1101)
+..++....+++||+............. ....+.++.|+..... ++..+.|..+++|.-..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g------------- 66 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG------------- 66 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC-------------
Confidence 3444555789999998776655544332 2334888899887753 33345578899886421
Q ss_pred cCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcE
Q 001318 783 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 861 (1101)
Q Consensus 783 ~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 861 (1101)
.++.+...... ....-.|++......|+++|+ .+.|+|||++...+.+.+++|...|+++.+.- ...|
T Consensus 67 -------~~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey 135 (673)
T KOG4378|consen 67 -------KTPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY 135 (673)
T ss_pred -------CCCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence 11111111111 122445566656668999988 89999999998777888999999999999998 7789
Q ss_pred EEEEeccCeEEEEEeecceEeeeecCcc-cCeeEEEEcCCCCE-EEEEeCCCceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 862 lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
||+++..|.|.|..+.++.....|.... ..|.-+.|++..+. |.+++.+|.|.+||+..... .+.....|.
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~Hs--- 208 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHS--- 208 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhcc---
Confidence 9999999999999999987777775443 34568999998654 56889999999999987432 233333444
Q ss_pred CCCeEEEEcCCCcEEEE--EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce-e
Q 001318 940 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK-L 1016 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~--~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~-~ 1016 (1101)
.+...++|+|....|++ +.|+.|.+||.........+.. ..+.+.++|+++|.+|++|+..|.|..||++..+ .
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 36788999998876665 7999999999987766665543 6689999999999999999999999999997654 4
Q ss_pred eeecCCCcccCCCCCCCCccceEEEEeC
Q 001318 1017 RCRINPSAYLPAGVSSSNVHPLVIAAHP 1044 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~v~~~~i~~~~ 1044 (1101)
+..+. -|... |. +++|-|
T Consensus 286 v~v~s-------ah~~s-Vt--~vafq~ 303 (673)
T KOG4378|consen 286 VAVRS-------AHDAS-VT--RVAFQP 303 (673)
T ss_pred ceEee-------ecccc-ee--EEEeee
Confidence 44333 22233 55 778877
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=181.63 Aligned_cols=169 Identities=20% Similarity=0.267 Sum_probs=132.6
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCcccCeEEEeeeecCCccEEEEEecCCcEE
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
..+|.||.+.|+|++|+.||. +|++|++|-.+.|||.-..+.++.+ .||...|.++.|.|..+..++++|+.|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 346889999999999999999 8999999999999999988888776 5899999999999998889999999999999
Q ss_pred EEecCCCC----------ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001318 524 AWLYDNLG----------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 593 (1101)
Q Consensus 524 ~wd~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 593 (1101)
++|+...+ ....+..|...|..++..|++. +.+.++++||+|+-+|++..
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--------------------htfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--------------------HTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--------------------ceEEEecCCcceeeecccCC
Confidence 99998522 2223344445555555555554 67999999999999999863
Q ss_pred cee-EE-------EcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEec
Q 001318 594 QLL-TS-------IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 594 ~~~-~~-------~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 635 (1101)
..- .. ...........|+.++| +..+|++|+.|-..++||.+
T Consensus 181 h~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 181 HVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 210 00 01112223467899999 67799999999999999964
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-19 Score=175.09 Aligned_cols=174 Identities=24% Similarity=0.387 Sum_probs=144.8
Q ss_pred CcceeecccCCCCcEEEEEec--CCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 412 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~sp--dg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 412 (1101)
.+.+...-+|+..=..++||| .|+ |++|..-+.|++|...+|.-... ..-+.+|+..|-.
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVED 262 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVED 262 (440)
T ss_pred cCceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceeec----------------Cccccccccchhh
Confidence 344444556999999999999 454 88998889999999988754321 1136789999999
Q ss_pred EEEec-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC---Cce
Q 001318 413 VIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAK 488 (1101)
Q Consensus 413 l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~ 488 (1101)
|+||| ....||+||.||+|+|||+..+.....+. .+.|.+.|+.|.|+..-. +|++|++||+++|||++. +++
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCc
Confidence 99999 56689999999999999999884333332 478999999999998888 899999999999999974 678
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 530 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~ 530 (1101)
+..|+-|..+|+++.|++..+ ..|++++.|..|.+||+...
T Consensus 340 VA~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 340 VATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ceeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeecc
Confidence 899999999999999998766 57888888999999999753
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=162.62 Aligned_cols=227 Identities=13% Similarity=0.132 Sum_probs=169.7
Q ss_pred CCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCC---CeeEEEEecCCCEEEEEe
Q 001318 748 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE---AVPCFALSKNDSYVMSAS 824 (1101)
Q Consensus 748 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~---~i~~~~~s~dg~~la~~s 824 (1101)
|+..++++.+.+.-|.+||.-+++. ... .....|.. ...+++|+|||..|.+|.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~l----------------------raS-y~~ydh~de~taAhsL~Fs~DGeqlfaGy 177 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKL----------------------RAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAGY 177 (406)
T ss_pred CccceeeeccccCceeeeecccccc----------------------ccc-hhhhhhHHhhhhheeEEecCCCCeEeecc
Confidence 6677788888899999888643322 111 11111222 346799999999999999
Q ss_pred CCeEEEEEC-CCCceeeE---e----cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEE
Q 001318 825 GGKISLFNM-MTFKTMAT---F----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 896 (1101)
Q Consensus 825 dg~i~vwd~-~~~~~~~~---~----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~ 896 (1101)
...|++||+ +.|..... + .+..+-|.+++|+|.+.+.+|.|+....+-||.-..++++..+-+|.+.|+.+.
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence 999999999 44432211 1 123566889999998888999999999999999888999999999999999999
Q ss_pred EcCCCCEEEEEeC-CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCC-ceee
Q 001318 897 FSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-LECV 973 (1101)
Q Consensus 897 ~s~dg~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~-~~~~ 973 (1101)
|.+||+.|.+|+. |-.|..||++..... +-.+..|....+.-......|+|++|+++ .||.|++||+++ +..+
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~p----v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRDP----VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccch----hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence 9999999999885 678999999874432 22222332211122234557899999996 999999999998 6655
Q ss_pred eeccCCCCCCCeeEEEEcCCCCEEEEEEcC
Q 001318 974 KQWVPRESSAPITHATFSCDSQLVYACFLD 1003 (1101)
Q Consensus 974 ~~~~~~~h~~~i~~l~~spdg~~l~s~s~d 1003 (1101)
..+. .|+..+..+++.|-=.++++++..
T Consensus 334 sv~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 334 SVTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccc--cccccccceecCcccceeeeccCc
Confidence 5544 678899999999998888887754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-17 Score=168.18 Aligned_cols=505 Identities=14% Similarity=0.151 Sum_probs=289.8
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe--cC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS--PD 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pd 418 (1101)
...|...|.|+.|+.... ++.+ +.|..+.+|.-.+........+. ....+ ...| +....-- ..
T Consensus 10 k~r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~p-----~df~p-----t~~h---~~~rs~~~g~~ 74 (737)
T KOG1524|consen 10 KNRNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKLP-----DDFVP-----TDMH---LGGRSSGGGKG 74 (737)
T ss_pred ccccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhCC-----cccCC-----cccc---ccccccCCCCC
Confidence 336778888999999887 3444 45555555554333221110000 00000 0011 0000000 12
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
...|+.++.||.+.|-+-... +. .....|.+.|.+-.|+|||. -|+|.+.||.|++|. ++|....++.....+
T Consensus 75 ~d~~~i~s~DGkf~il~k~~r--VE--~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSAR--VE--RSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEES 147 (737)
T ss_pred cceEEEEcCCceEEEecccch--hh--hhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCce
Confidence 456888899999998875542 22 24678999999999999999 699999999999999 888877777777889
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|.|++|.++.+ ..+++.+ +.+.+=-+.....+..+..|.+-|.++. |++..+.+++
T Consensus 148 v~c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~---------------------W~~~s~lI~s 203 (737)
T KOG1524|consen 148 IRCARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLS---------------------WSTQSNIIAS 203 (737)
T ss_pred eEEEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEee---------------------cCccccceee
Confidence 99999977654 4555544 5555555555566666666666555544 5555568999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCC
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 658 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1101)
||+|-..++||. .|+.+..-..|.+ +|++++|.|+ +.++.++. +++|+=
T Consensus 204 gGED~kfKvWD~-~G~~Lf~S~~~ey--~ITSva~npd-~~~~v~S~-nt~R~~-------------------------- 252 (737)
T KOG1524|consen 204 GGEDFRFKIWDA-QGANLFTSAAEEY--AITSVAFNPE-KDYLLWSY-NTARFS-------------------------- 252 (737)
T ss_pred cCCceeEEeecc-cCcccccCChhcc--ceeeeeeccc-cceeeeee-eeeeec--------------------------
Confidence 999999999997 4566665555555 7999999999 66666654 233310
Q ss_pred CCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccc
Q 001318 659 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
....
T Consensus 253 ----------------------------------------------------------------------------~p~~ 256 (737)
T KOG1524|consen 253 ----------------------------------------------------------------------------SPRV 256 (737)
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 0134
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
+.|..++||+||..++.++..|.+.+=-.- ..++. -+.
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~A~~i----------------------eq~l~--------------------~~n 294 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIVAYAI----------------------EQQLV--------------------SGN 294 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEEeeee----------------------hhhhh--------------------hcc
Confidence 678899999999999999998877642110 00000 001
Q ss_pred EEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEE
Q 001318 819 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 897 (1101)
Q Consensus 819 ~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 897 (1101)
+=++.. ...|.+-|+.++.+ ..+. ....+...+..- + +|+++. ...|++|.-......-.+.+....+.-+.-
T Consensus 295 ~~~t~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~sL~Y--~-hLvvaT-s~qvyiys~knwntpiiidgre~tr~lieq 368 (737)
T KOG1524|consen 295 LKATSKSRKSITVRDVATGVQ-DILE-FPQRVVKFSLGY--G-HLVVAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQ 368 (737)
T ss_pred ceeEeeccceEEeehhhhhHH-HHhh-Cccceeeeeece--e-EEEEEe-ccEEEEEecCCccCcEEEeccccchhHhhh
Confidence 111222 34577777766544 2222 344555555543 3 333332 346888876655544445544443322221
Q ss_pred cCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE--E-eCCeEEEEEc-CCceee
Q 001318 898 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HETQLAIFET-TKLECV 973 (1101)
Q Consensus 898 s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~-~d~~v~vwd~-~~~~~~ 973 (1101)
+.+ .+++ ....++.++..+...... ..+.|... .....-..|-....|+. . ....+.+||. .+|+..
T Consensus 369 ~ek-~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~q 439 (737)
T KOG1524|consen 369 GEK-YFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQ 439 (737)
T ss_pred hhh-heEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCccc
Confidence 111 1222 223345555554421110 00111110 11111122222334454 2 3446788888 677654
Q ss_pred eeccCCCCCCCeeEEEEc----CCCCEEEEEEcCCeEEEEEcCCce-eeeecCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001318 974 KQWVPRESSAPITHATFS----CDSQLVYACFLDATVCVFSAANLK-LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1048 (1101)
Q Consensus 974 ~~~~~~~h~~~i~~l~~s----pdg~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~ 1048 (1101)
..-..-.|...|..++.. ++.+.++.-..++.++|=.+.+.- ....++ + | ..|. .++|+. -.
T Consensus 440 gDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~K----i--G---TmVh--tLawnd--tt 506 (737)
T KOG1524|consen 440 GDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYK----I--G---TMVH--TLAWND--TT 506 (737)
T ss_pred CCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhh----h--h---hhhh--hhhhcc--cc
Confidence 332212356677777764 355677777777777776554321 111111 1 1 1133 688874 44
Q ss_pred EEEEEecCCcEEEEeccCCC
Q 001318 1049 EFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1049 ~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
-+++|-.|+++.||-.++.-
T Consensus 507 NiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 507 NILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred ceeeeeccceEEEEEcCCcc
Confidence 58888999999999987643
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=162.50 Aligned_cols=308 Identities=14% Similarity=0.204 Sum_probs=196.7
Q ss_pred ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec-CCCCceeEEEEccCCceEEeccccCcee
Q 001318 487 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 487 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
.+...+++|.+.|++++|.. + .+|++|..-|.|++|++.+......+. .+...++.+...|++.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa--~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~------------ 69 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQA--N-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS------------ 69 (323)
T ss_pred CCeeEeccccchheehhhcc--c-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc------------
Confidence 34567789999999999843 3 469999999999999999988877777 4555677776666554
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCC-cEEEEEecCcccccccc
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTF 644 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~ 644 (1101)
+.+-+.|+.+.+|++..+..+..-. ..++++.|.+-. +...+... .+-.++-+...+ .+..
T Consensus 70 ----------l~tqgRd~~L~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~ 131 (323)
T KOG0322|consen 70 ----------LDTQGRDPLLILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ 131 (323)
T ss_pred ----------hhhcCCCceEEEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence 8888999999999998765543322 134445554321 11111110 111111111000 0000
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCC
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 724 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 724 (1101)
.+ +....+++-+-.
T Consensus 132 D~-------------------------------------------------------------g~~tqv~i~dd~----- 145 (323)
T KOG0322|consen 132 DG-------------------------------------------------------------GDTTQVQIADDS----- 145 (323)
T ss_pred cc-------------------------------------------------------------CccceeEccCch-----
Confidence 00 000011111000
Q ss_pred ccccccccCccccccceEEEEEcC-CCc--eEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 725 NQCRSLRLPENLRATKISRLIFTN-SGN--AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~~i~~l~~s~-~g~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
..+..+.+.+..+.. ++. .++++.++|.+.+||++.++.. .+......+....
T Consensus 146 ---------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-------------~~~~~~~kv~~~~-- 201 (323)
T KOG0322|consen 146 ---------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-------------IQLPQSSKVESPN-- 201 (323)
T ss_pred ---------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee-------------eccccccccccch--
Confidence 011223333333221 222 3566777899999998664211 1111111111111
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC--Cce--eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
..|..+|.++.+.+.-..=++|+ +..+..|++.. +.+ ..+..-....|..+.+-| |++++|+++.|+.||||+.
T Consensus 202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW 280 (323)
T ss_pred hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence 23889999999987665556666 67788888763 222 222333356788999999 9999999999999999999
Q ss_pred ecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 877 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 877 ~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
++...++.++.|++.|++++|+||...+|.++.|++|.+|++
T Consensus 281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999986
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-19 Score=200.54 Aligned_cols=258 Identities=13% Similarity=0.156 Sum_probs=200.0
Q ss_pred cccCCCCcEEEEEecCCCe---EEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 341 TLNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~---llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
.+.-...-..++|.+.|.. |||.|..||.|.+||...- +.. ...-.......|++.|..+.|++
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~-----------~~~~~la~~~~h~G~V~gLDfN~ 126 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IAN-----------ASEEVLATKSKHTGPVLGLDFNP 126 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccC-----------cchHHHhhhcccCCceeeeeccc
Confidence 3344567789999998876 6999999999999998752 110 00001124678999999999999
Q ss_pred CCC-eEEEEEcCCeEEEEEccCCceeeeeeee--ccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecC
Q 001318 418 DGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEI--DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 494 (1101)
Q Consensus 418 dg~-~las~~~d~~i~iwd~~~~~~~~~~~~l--~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 494 (1101)
.+. +||+|+.||.|.|||+..-+..- .+ ..-.+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..
T Consensus 127 ~q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~ 202 (1049)
T KOG0307|consen 127 FQGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSD 202 (1049)
T ss_pred cCCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccccccc
Confidence 555 99999999999999998743221 22 124568999999987776 799999999999999999988877766
Q ss_pred ccc--CeEEEeeeecCCccEEEEEecCC--cEEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 495 HEA--PVYSVCPHHKENIQFIFSTALDG--KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 495 h~~--~v~~v~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
|.+ .+..+.|+++...+++++...|+ .|.+||++... ....+..|...|.++.|.+.+.
T Consensus 203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~---------------- 266 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP---------------- 266 (1049)
T ss_pred CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc----------------
Confidence 554 46778999887755444444443 69999998654 4455677887777777777664
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccC-CCEEEEEeCCCcEEEEEecCc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.++++++.|+.|.+|+.++++.+..+... ...+..+.|.|. ...+++++-||.|.|+.+.+.
T Consensus 267 ----~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 267 ----RLLLSSGKDNRIICWNPNTGEVLGELPAQ--GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ----hhhhcccCCCCeeEecCCCceEeeecCCC--CcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 57999999999999999999999999864 347899999994 558899999999999998765
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-17 Score=173.98 Aligned_cols=572 Identities=14% Similarity=0.151 Sum_probs=318.3
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC-----
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----- 418 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 418 (1101)
|...-.++.|+|.| |+|.|+. ..|.|-|..+-+.+. .+.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 34456788999999 6888875 578899988877766 37778999999999872
Q ss_pred -C------CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC---CCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 419 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 419 -g------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
+ -+||++...|.|.+||...+..+. .+..|.++|..++|-+ +.+. +|+.-....++.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 257778888999999999876544 5778999999999965 3434 566666678999999999999
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCc-------eEEec---
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG--- 558 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~~~~~--- 558 (1101)
............|+.+.|-...++.+.++ .|.+.+-+.-..... ......+.+..+-. ....+
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s-~g~vl~~~~l~~sep------~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLGS-KGFVLSCKDLGLSEP------DVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEcc-CceEEEEeccCCCCC------CCCceeEEEecCccchhhhhhhhhccccc
Confidence 88776655666667766554444445444 466655544321110 00011111111100 00000
Q ss_pred -cccCc------eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC--CEEEEEeCCCcE
Q 001318 559 -FRKRS------LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--CLLAVSTNDNGI 629 (1101)
Q Consensus 559 -~~~~~------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i 629 (1101)
..... ..-++|+|.-+.++-......+.++|++-..++.......+. +.-+.+-|++ ..|++...||.+
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~l 298 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRL 298 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeE
Confidence 00000 112456776666666667788999999999998888766553 4447777755 579999999999
Q ss_pred EEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccC
Q 001318 630 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 709 (1101)
Q Consensus 630 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 709 (1101)
.+|-.+......+.-..+-. .+-
T Consensus 299 tirvrk~~~~~f~~~~~~l~---------------------------------------------------------~dl 321 (1062)
T KOG1912|consen 299 TIRVRKEEPTEFKKPNASLS---------------------------------------------------------MDL 321 (1062)
T ss_pred EEEEeeccCccccccchhhc---------------------------------------------------------ccc
Confidence 99965432111111000000 000
Q ss_pred CCcceeeeccccCCCccccccccCccccccceEEEEEcCC-CceEEeeecCceEEeeeccccccCCCCceeeeecCcccc
Q 001318 710 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 788 (1101)
Q Consensus 710 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~ 788 (1101)
...+.+.... .+..+......|. ...++..-++|...+|.+..+....++......-..-+|
T Consensus 322 ~~Q~~~vr~m-----------------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~ 384 (1062)
T KOG1912|consen 322 GEQVHVVRPM-----------------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFD 384 (1062)
T ss_pred ccceEEEeec-----------------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccc
Confidence 0000000000 1111112222222 222333444555566665433222221110000000000
Q ss_pred CCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCe--EEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe
Q 001318 789 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 866 (1101)
Q Consensus 789 ~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 866 (1101)
....... -....-+..|.||.. +.|. +++--+......... ..+. +....-| ++|.|.
T Consensus 385 f~~~~~~---------v~k~~l~~LS~dg~h----~sGs~~~~~~p~p~~t~~~~~--p~~n-~~~~~~p----LvAvGT 444 (1062)
T KOG1912|consen 385 FNLSTKL---------VGKTSLISLSDDGSH----SSGSTCVRMRPMPELTKVEND--PGGN-TPAGTVP----LVAVGT 444 (1062)
T ss_pred ccCceee---------hhhccccchhhcCCC----CCCceeeecccCcccceeecC--CCCC-ccceeee----eEEeec
Confidence 0000000 000000111112100 0011 000001111111111 1111 1111222 899999
Q ss_pred ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEe----------CCCceEEEeCCCcccccceeeecCCCCC
Q 001318 867 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG----------ADSQLCVWSSDGWEKQKNRFLQIPTGRT 936 (1101)
Q Consensus 867 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 936 (1101)
+.|+|.++|+.++...+.+..|++.|.++.|-.... |++.+ .-+.+.|-|+.+|.....+-++..+
T Consensus 445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~d--- 520 (1062)
T KOG1912|consen 445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPD--- 520 (1062)
T ss_pred CCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccCCCCC---
Confidence 999999999999999999999999999999976543 44333 2345788899998754444333332
Q ss_pred CCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCC-eeEEEEc-CCCC----------------EE
Q 001318 937 PTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP-ITHATFS-CDSQ----------------LV 997 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~-i~~l~~s-pdg~----------------~l 997 (1101)
..+|+.+..|..|+||++. .+.-+.+||+++..+++.... .-+ |+.+.|+ |.-. ..
T Consensus 521 --espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~---a~P~it~leWsl~~~~si~qk~ls~q~sms~n~v 595 (1062)
T KOG1912|consen 521 --ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL---ALPLITVLEWSLPKHPSIKQKELSKQSSMSENLV 595 (1062)
T ss_pred --cCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh---cCCcEEEEeecccCCCCcccccchhhhhhhhcee
Confidence 3689999999999999995 888999999998877665432 334 8889998 3221 22
Q ss_pred EEEEcCCeEEEEEcCCceeeeecCCCcccCCCCC------CCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 998 YACFLDATVCVFSAANLKLRCRINPSAYLPAGVS------SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 998 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
++.+ +..+++.+.....+ ..++.+ .-......++|- +..++.|..+|++.+||+..
T Consensus 596 v~ds--~es~~~~~~~~a~~--------~sdgsq~~~a~esfafal~~mAwk---~d~lv~GD~~GNl~~WDlg~ 657 (1062)
T KOG1912|consen 596 VLDS--VESRIYHITLSALV--------VSDGSQVNTAWESFAFALCAMAWK---DDILVVGDVEGNLVVWDLGR 657 (1062)
T ss_pred eecc--ccchheehhhhhhh--------hccccchhhHHHHHHHHHHhhhcc---CCeeEeecccCceeEEeccc
Confidence 2222 22333332211111 011100 000112246663 57999999999999999743
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-17 Score=161.82 Aligned_cols=403 Identities=15% Similarity=0.171 Sum_probs=236.3
Q ss_pred EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE-EcC
Q 001318 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSR 428 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d 428 (1101)
-++|||+|+| +|+.+.- .+.|=|.++-+.... +. --+.|..+.|+.|..+++.+ +.|
T Consensus 13 ~c~fSp~g~y-iAs~~~y-rlviRd~~tlq~~ql-------------------f~-cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNY-IASLSRY-RLVIRDSETLQLHQL-------------------FL-CLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCe-eeeeeee-EEEEeccchhhHHHH-------------------HH-HHHHhhheeeeccceeeeeeeecc
Confidence 4689999997 7777654 888888887665431 11 13578889999999887765 778
Q ss_pred CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecC
Q 001318 429 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 508 (1101)
Q Consensus 429 ~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 508 (1101)
+.|.+|++...+-.. .+.....++.+++|||||++ +|.+...|-.|.||.+.+.+....-. -...+..++|+ +
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f~--~ 143 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAFH--P 143 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEecc-cccCceeEEEC--C
Confidence 999999998876554 35556789999999999987 78888999999999998877654322 22335667774 5
Q ss_pred CccEEEEEecCCcEEEEecC---CCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcE
Q 001318 509 NIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 585 (1101)
Q Consensus 509 ~~~~l~s~~~dg~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 585 (1101)
+|++.+.++.-...-...+. .-.....+.......+.+.|+||| +.+++
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg---------------------~~laV------- 195 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG---------------------NWLAV------- 195 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC---------------------cEEEE-------
Confidence 66777776653211111111 111222333334444455555554 45544
Q ss_pred EEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccC---CCCCCcc
Q 001318 586 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS---ENSKPTI 662 (1101)
Q Consensus 586 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 662 (1101)
||---.-.+..+. . .-.+..++|+|.+++|++|+.|+.+|+.+--+- +.+..+.. -....... .... .+
T Consensus 196 --wd~~Leykv~aYe--~-~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW-k~f~eflh-l~s~~dp~~~~~~ke-~~ 267 (447)
T KOG4497|consen 196 --WDNVLEYKVYAYE--R-GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW-KPFGEFLH-LCSYHDPTLHLLEKE-TF 267 (447)
T ss_pred --ecchhhheeeeee--e-ccceeEEEeccccceEEeeccchhhhhhceeee-eehhhhcc-chhccCchhhhhhhh-hc
Confidence 4432221122221 1 124778999999999999999999998765433 22221110 00000000 0000 00
Q ss_pred cccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCc-cccccce
Q 001318 663 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE-NLRATKI 741 (1101)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~i 741 (1101)
+... -.. .+-.+..++ ..|...+
T Consensus 268 ~~~q-------------------------------------------------l~~-------~cLsf~p~~~~a~~~~~ 291 (447)
T KOG4497|consen 268 SIVQ-------------------------------------------------LLH-------HCLSFTPTDLEAHIWEE 291 (447)
T ss_pred chhh-------------------------------------------------hcc-------cccccCCCccccCcccc
Confidence 0000 000 000000000 0000000
Q ss_pred EEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEE
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 821 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la 821 (1101)
.. .+|+.... . ..+....+.+. . .+..-.+.-++|++|..+++
T Consensus 292 se-------------------~~YE~~~~-------p---v~~~~lkp~tD------~--pnPk~g~g~lafs~Ds~y~a 334 (447)
T KOG4497|consen 292 SE-------------------TIYEQQMT-------P---VKVHKLKPPTD------F--PNPKCGAGKLAFSCDSTYAA 334 (447)
T ss_pred ch-------------------hhhhhhhc-------c---eeeecccCCCC------C--CCcccccceeeecCCceEEe
Confidence 00 00000000 0 00000000000 0 11344567799999999999
Q ss_pred EEeC---CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEc
Q 001318 822 SASG---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 822 ~~sd---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 898 (1101)
+-.| +.+.+||++..+....+. ...+|.+..|+| +...|+.+.....+++|......++..- +..-.|..++|.
T Consensus 335 Trnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~ 411 (447)
T KOG4497|consen 335 TRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWL 411 (447)
T ss_pred eecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEec
Confidence 9875 569999998766554443 466899999999 7777777777778999997765555443 233679999999
Q ss_pred CCCCEEEEEeCCCce
Q 001318 899 HALNVLVSSGADSQL 913 (1101)
Q Consensus 899 ~dg~~l~s~s~D~~v 913 (1101)
.+|..++-.+.|...
T Consensus 412 ~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 412 QPGEFIVLCGKDAFC 426 (447)
T ss_pred CCCcEEEEEcCCceE
Confidence 999999999998743
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=161.41 Aligned_cols=273 Identities=15% Similarity=0.256 Sum_probs=187.2
Q ss_pred eeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-------ce-----EEEec-CcccCeEEEeeee-----cCCccEEEEE
Q 001318 455 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AK-----QYIFE-GHEAPVYSVCPHH-----KENIQFIFST 516 (1101)
Q Consensus 455 V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-------~~-----~~~~~-~h~~~v~~v~~~~-----~~~~~~l~s~ 516 (1101)
...+.|+|||. .|++-+.|..+.+|++... .. ..+++ .....|...||-+ .++..++++.
T Consensus 52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 45588999999 8999999999999997521 11 11111 1234566667642 3556789999
Q ss_pred ecCCcEEEEecCCCCceeeecCCC--C---ceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC-
Q 001318 517 ALDGKIKAWLYDNLGSRVDYEAPG--R---WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM- 590 (1101)
Q Consensus 517 ~~dg~i~~wd~~~~~~~~~~~~~~--~---~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~- 590 (1101)
+.+.-|++||.-+++....+..-. . ...+++ |+|||..|++| ..+.|+++|+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~---------------------Fs~DGeqlfaG-ykrcirvFdt~ 187 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQ---------------------FSPDGEQLFAG-YKRCIRVFDTS 187 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEE---------------------ecCCCCeEeec-ccceEEEeecc
Confidence 999999999999988776554322 1 233444 45555556554 5679999999
Q ss_pred CCCceeEEEc--C---CCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccc
Q 001318 591 DSVQLLTSID--A---DGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP 664 (1101)
Q Consensus 591 ~~~~~~~~~~--~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1101)
+.|.....+. . .+...-+.+++|+| +.+.+++|+....+-||.-... .++..+
T Consensus 188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~ll-------------------- 246 (406)
T KOG2919|consen 188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLL-------------------- 246 (406)
T ss_pred CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceeee--------------------
Confidence 5554322221 1 12234567889999 5668888888777766653332 111100
Q ss_pred cchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEE
Q 001318 665 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 744 (1101)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l 744 (1101)
T Consensus 247 -------------------------------------------------------------------------------- 246 (406)
T KOG2919|consen 247 -------------------------------------------------------------------------------- 246 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001318 745 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 824 (1101)
Q Consensus 745 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s 824 (1101)
.+|.+.|+.++|.+||+.|.+|+
T Consensus 247 ---------------------------------------------------------ggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 247 ---------------------------------------------------------GGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred ---------------------------------------------------------cccCCCeeeEEeccCcCeecccc
Confidence 12667777777777777777776
Q ss_pred --CCeEEEEECCC-CceeeEecCCCC-CeEEE--EEecCCCcEEEEEeccCeEEEEEeec-ceEeeeecCcccCeeEEEE
Q 001318 825 --GGKISLFNMMT-FKTMATFMPPPP-AATFL--AFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAF 897 (1101)
Q Consensus 825 --dg~i~vwd~~~-~~~~~~~~~~~~-~i~~l--~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~ 897 (1101)
+..|..||++. ...+..+..|.. .-..| ...| ++++||+|+.||.|++||+++ +..+..+..|+..|+.+++
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 67788888864 445556666644 22333 4457 799999999999999999998 7778888889999999999
Q ss_pred cCCCCEEEEEeCC
Q 001318 898 SHALNVLVSSGAD 910 (1101)
Q Consensus 898 s~dg~~l~s~s~D 910 (1101)
+|--.+++|++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9998888888754
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.5e-17 Score=162.94 Aligned_cols=302 Identities=16% Similarity=0.180 Sum_probs=213.2
Q ss_pred ccceEEEEEcCCCc-eEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 738 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
..++.++.|.+++. .+++++.|..|++|.+....-....... .....+. .|...|.++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V--------------~y~s~Ls--~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV--------------EYLSSLS--RHTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeE--------------EEeeccc--CCcceeEEEEEcCC
Confidence 46788999988877 8999999999999998654321110000 0111122 38999999999999
Q ss_pred CCEEEEEe-CCeEEEEECC--------C--------CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 817 DSYVMSAS-GGKISLFNMM--------T--------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
|..+|+|+ +|.|.+|-.. + +...+.+.+|...|..++|+| +++++++|+-|..+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999999 6899999865 2 234456788999999999999 9999999999999999999999
Q ss_pred eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccccee---eecCCCCC------------CCCCCCeE
Q 001318 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF---LQIPTGRT------------PTAQSDTR 944 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~~~~~------------~~~~~v~~ 944 (1101)
.....+.+|..-|..++|.|-++++++-+.|...+++.+.........- +....+.. ....-...
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 9999999999999999999999999999999977777665432211110 00000000 00123356
Q ss_pred EEEcCCCcEEEE-E----eCCe-----EEEEEcCCceeeeeccCCCCCCCeeEEEEcC------------------CCCE
Q 001318 945 VQFHQDQIHFLV-V----HETQ-----LAIFETTKLECVKQWVPRESSAPITHATFSC------------------DSQL 996 (1101)
Q Consensus 945 ~~~s~dg~~la~-~----~d~~-----v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp------------------dg~~ 996 (1101)
++|+|||.+|++ + ..+. .++|+-...+.... .......+...+.|+| -+-.
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~-~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA-RLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee-ecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 899999999987 2 2232 34554432221111 1112244555555554 1223
Q ss_pred EEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 997 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 997 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+|.++ -..|+|||.++.+.++.+...+|.+ +. .++|++ ||..++..|.||-..+--++..|
T Consensus 315 faiAt-~~svyvydtq~~~P~~~v~nihy~~-------iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 315 FAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA-------IT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEee-cceEEEeccccccceEEEeeeeeee-------ec--ceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 44454 5689999999999988776444443 44 899998 78999999999988888877666
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-17 Score=164.37 Aligned_cols=218 Identities=14% Similarity=0.235 Sum_probs=165.8
Q ss_pred ccccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC
Q 001318 401 ALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 475 (1101)
Q Consensus 401 ~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d 475 (1101)
-...||+++|..++|+| +...||+||.|.+|.||++..+.. ......|.||...|.-++|.|.... +|++++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 35889999999999999 888999999999999999876543 2345678999999999999999887 89999999
Q ss_pred CcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCC-ceeEEEEccCCce
Q 001318 476 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGTR 554 (1101)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~ 554 (1101)
.+|.+||+.+|+.+-++. |.+.|++++| +.||.+|++.+.|+.||+||.++++.+..-..|.+ .-....|-.+
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sf--n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~--- 227 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSF--NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS--- 227 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEe--ccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc---
Confidence 999999999999999988 9999999998 46678999999999999999999887776555543 2223333333
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEe----CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEE-EEeCCCcE
Q 001318 555 TYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGI 629 (1101)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i 629 (1101)
+. +++.+ .+..+-+||...-+.-..+..-.....|.---|.+|.+.++ +|-.|+.|
T Consensus 228 ------------------g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~I 288 (472)
T KOG0303|consen 228 ------------------GK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSI 288 (472)
T ss_pred ------------------Cc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcce
Confidence 34 44433 57889999977654322222222222354445677877666 45569999
Q ss_pred EEEEecCcccccccc
Q 001318 630 KILATSDGIRLLRTF 644 (1101)
Q Consensus 630 ~iw~~~~~~~~~~~~ 644 (1101)
|.|.+.+....+..+
T Consensus 289 RYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 289 RYFEITNEPPFVHYL 303 (472)
T ss_pred EEEEecCCCceeEEe
Confidence 999998874444433
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.4e-17 Score=157.17 Aligned_cols=344 Identities=13% Similarity=0.178 Sum_probs=237.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE-eCCCcEEEEEecCcccccccc
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
..+|+|+|+++++.+.- .+.|-|..+.+..+.+..- ..|.-+.|..|..+++++ ..++.|.+|++... +....+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEe
Confidence 46788999999998865 7888888887765555432 236678999988777665 56789999998755 211111
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCC
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 724 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 724 (1101)
T Consensus 88 -------------------------------------------------------------------------------- 87 (447)
T KOG4497|consen 88 -------------------------------------------------------------------------------- 87 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCccccccceEEEEEcCCCceEEeeec-CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCC
Q 001318 725 NQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 803 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~ 803 (1101)
......+.+++|||||+.++..++ +-.|.+|.+.+ ..+..+..
T Consensus 88 ----------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t--------------------~~~~~~~~------ 131 (447)
T KOG4497|consen 88 ----------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT--------------------QKGYLLPH------ 131 (447)
T ss_pred ----------ccCCCcceeeeECCCcceEeeeecceeEEEEEEecc--------------------ceeEEecc------
Confidence 114467889999999977666555 78888888733 22222221
Q ss_pred CCCCeeEEEEecCCCEEEEEe--C--CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec--cCeEEEEEee
Q 001318 804 PEEAVPCFALSKNDSYVMSAS--G--GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVR 877 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s--d--g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~ 877 (1101)
....+..++|+|||++.+..+ | .-+.+..-+....++.+....-..+.+.|+| ||..||+-.. +-.|+.|.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laVwd~~Leykv~aYe-- 208 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAVWDNVLEYKVYAYE-- 208 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEEecchhhheeeeee--
Confidence 234468899999999999987 4 2255555556667777776677788999999 8877775332 11222221
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc--------------------------------
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-------------------------------- 925 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~-------------------------------- 925 (1101)
-.-.+..++|+|.+++|+.|+.|+.+||-+--+.+...
T Consensus 209 ----------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 209 ----------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred ----------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 12357889999999999999999998876633321100
Q ss_pred --------------------------ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeC---CeEEEEEcCCceeeeec
Q 001318 926 --------------------------NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE---TQLAIFETTKLECVKQW 976 (1101)
Q Consensus 926 --------------------------~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d---~~v~vwd~~~~~~~~~~ 976 (1101)
...++-......+.-++..++||+|..++++-.| +.+.+||+.+.+....+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 0001111222233456788999999999999555 57999999988876655
Q ss_pred cCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC
Q 001318 977 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1056 (1101)
Q Consensus 977 ~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d 1056 (1101)
. ...+|....|.|....|+.+.....+++|.......++.-. .| .....+.|.- +|..++..+.|
T Consensus 359 i---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~------~G-----F~i~~l~W~~-~g~~i~l~~kD 423 (447)
T KOG4497|consen 359 I---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK------KG-----FNIQKLQWLQ-PGEFIVLCGKD 423 (447)
T ss_pred h---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC------CC-----ceeeeEEecC-CCcEEEEEcCC
Confidence 4 26689999999999888888878889999987765554321 11 3444899987 67889988888
Q ss_pred Cc
Q 001318 1057 GG 1058 (1101)
Q Consensus 1057 g~ 1058 (1101)
.-
T Consensus 424 af 425 (447)
T KOG4497|consen 424 AF 425 (447)
T ss_pred ce
Confidence 64
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-17 Score=162.85 Aligned_cols=243 Identities=14% Similarity=0.202 Sum_probs=176.2
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 414 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 414 (1101)
+...-..-+|+++|..++|+|-....+|+||.|.+|.||++..+....... -....|.||...|.-++
T Consensus 71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQ 138 (472)
T ss_pred CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEe
Confidence 334444668999999999999888899999999999999998765543211 12235899999999999
Q ss_pred Eec-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec
Q 001318 415 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 493 (1101)
Q Consensus 415 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 493 (1101)
|+| -.+.|++++.|.+|.+||+.+|+.+. ++. |.+.|+++.|+.||. +++|.+.|+.|+|||.++|+.+..-.
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecc
Confidence 999 56789999999999999999998665 455 999999999999999 79999999999999999999999888
Q ss_pred CcccCeEE-EeeeecCCccEEEEEe---cCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 494 GHEAPVYS-VCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 494 ~h~~~v~~-v~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
+|.+.-.. +.| -.+|.++.+|- .+..+-+||..+.+....+..- .+...+..--+
T Consensus 213 ~heG~k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-------------------DtSnGvl~PFy 271 (472)
T KOG0303|consen 213 AHEGAKPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-------------------DTSNGVLLPFY 271 (472)
T ss_pred cccCCCcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEe-------------------ccCCceEEeee
Confidence 88765332 233 35556444442 3678999988765443221110 01112333345
Q ss_pred cCCCCEEEEEe-CCCcEEEEECCCCce-eEEEcCCCCCCCcCeEEEccC
Q 001318 570 DTTKNRFLAAG-DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKD 616 (1101)
Q Consensus 570 ~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~ 616 (1101)
+++.+.++.+| .|+.||-|.+....+ ++-+.......+-..+.|-|.
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 66667666655 799999999977653 333332222334455677664
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.9e-16 Score=169.53 Aligned_cols=279 Identities=10% Similarity=0.115 Sum_probs=178.3
Q ss_pred eeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeec-CceEEeeeccccccCCCCceeeee
Q 001318 704 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASV 782 (1101)
Q Consensus 704 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~ 782 (1101)
.++...++.|.+|++...........+. .......++++|+++.|++++. ++.|.+|++..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~------------- 66 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD------------- 66 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence 4455678999999996422222222221 2345678899999998877654 68888888731
Q ss_pred cCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCC-Cc---eeeEecCCCCCeEEEEEec
Q 001318 783 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMATFMPPPPAATFLAFHP 856 (1101)
Q Consensus 783 ~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~-~~---~~~~~~~~~~~i~~l~~sp 856 (1101)
+|.+..... .........++++|+++++++++ ++.|.+|++.+ +. .+..+. +......++++|
T Consensus 67 --------~g~l~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 67 --------DGALTFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred --------CCceEEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence 111100000 00223467899999999999887 68999999964 22 222232 223467788999
Q ss_pred CCCcEEE-EEeccCeEEEEEeecceEee-------eecCcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCC--ccccc
Q 001318 857 QDNNIIA-IGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG--WEKQK 925 (1101)
Q Consensus 857 ~d~~~la-sg~~dg~v~vwd~~~~~~~~-------~l~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~--~~~~~ 925 (1101)
++++++ +...++.|.+||+.+...+. .... ......++|+|||++|+++.. +++|.+|+++. ++...
T Consensus 136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 777665 45567999999997633221 1111 233568999999999988876 89999999974 22211
Q ss_pred ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCce----eeeeccCCCCCCCeeEEEEcCCCCEEEE
Q 001318 926 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 926 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~----~~~~~~~~~h~~~i~~l~~spdg~~l~s 999 (1101)
...+...............+.|+|+|++++++ .++.|.+|++.... .+..... ......++|+|||++|++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence 11121111111111123468999999999985 46799999986432 2222221 134568899999999998
Q ss_pred EEc-CCeEEEEEcC--Ccee
Q 001318 1000 CFL-DATVCVFSAA--NLKL 1016 (1101)
Q Consensus 1000 ~s~-dg~v~vwd~~--~~~~ 1016 (1101)
+.. +++|.+|+++ ++.+
T Consensus 291 a~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 291 AGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEccCCcEEEEEEcCCCCcE
Confidence 775 8899999874 4543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-15 Score=165.73 Aligned_cols=605 Identities=11% Similarity=0.091 Sum_probs=341.0
Q ss_pred CCCCCCcceeeccc-CCCCcEEEEEecC-----------CCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcc
Q 001318 330 TPEDLPKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP 397 (1101)
Q Consensus 330 ~~~~~~~~~~~~~~-h~~~v~~~~~spd-----------g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 397 (1101)
.+|...-+.+..+. |...|+.+.|.|- .+.+||++...|.|.+||+..+..+.
T Consensus 39 VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~--------------- 103 (1062)
T KOG1912|consen 39 VVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN--------------- 103 (1062)
T ss_pred EEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh---------------
Confidence 44445555556666 8899999999872 34578999999999999999887655
Q ss_pred cccccccCCCCCeEEEEEec---CC-CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEec
Q 001318 398 LQAALVKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 473 (1101)
Q Consensus 398 ~~~~~~~~h~~~V~~l~~sp---dg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~ 473 (1101)
-+..|..+|..++|-+ +. ..|++-....+|.+|+..+|+.+-+ ...-.....|+.+.|-+...+.+.|+
T Consensus 104 ----~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk---~~ys~~iLs~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 104 ----WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK---YDYSHEILSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred ----hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec---cccCCcceeeeeeCCCCcceEEEEcc
Confidence 2778899999999987 44 5677778889999999999986652 33344567778998866553444444
Q ss_pred CCCcEEEEeCC-C------CceEEEecCccc----------------C-------eEEEeeeecCCccEEEEEecCCcEE
Q 001318 474 DDKTIKVWDAT-N------GAKQYIFEGHEA----------------P-------VYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 474 ~d~~i~iwd~~-~------~~~~~~~~~h~~----------------~-------v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
.|.+.+-+.- . |+..+.-..|.. . .++..|.+.+.-+-++.......+.
T Consensus 177 -~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 177 -KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL 255 (1062)
T ss_pred -CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence 4555555432 1 233332222222 0 0111222222222333444567788
Q ss_pred EEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC-----------
Q 001318 524 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------- 592 (1101)
Q Consensus 524 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------- 592 (1101)
++|++-..+......+.+.+.-+.+-|++++ ..+++.-.||.+.+|-.+.
T Consensus 256 v~dle~~~~l~vvpier~~akfv~vlP~~~r-------------------d~LfclH~nG~ltirvrk~~~~~f~~~~~~ 316 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERGGAKFVDVLPDPRR-------------------DALFCLHSNGRLTIRVRKEEPTEFKKPNAS 316 (1062)
T ss_pred EEcchhhceeEEEEeccCCcceeEeccCCCc-------------------ceEEEEecCCeEEEEEeeccCccccccchh
Confidence 8998877776666666666666666666653 4588888999999997654
Q ss_pred -----CceeEEEcCCCCCCCcCeEEEccC-CCEEEEEeCCCcEEEEEecCcccccccccccccccccc---------CCC
Q 001318 593 -----VQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT---------SEN 657 (1101)
Q Consensus 593 -----~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---------~~~ 657 (1101)
+..+..+...+...+ ......|. ...++.--.+|.+.+|.+.++........+........ ...
T Consensus 317 l~~dl~~Q~~~vr~m~~~rp-~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~ 395 (1062)
T KOG1912|consen 317 LSMDLGEQVHVVRPMEEFRP-VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKT 395 (1062)
T ss_pred hccccccceEEEeechhccc-ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhc
Confidence 222222222222222 22333443 55555666788899999887622111111000000000 000
Q ss_pred CCCcccccchhhhhhhcccccccccccccccC---CCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCc
Q 001318 658 SKPTISPISAAAAAAATSAGLADRAASMVSIP---GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 734 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 734 (1101)
....++.++.-.+ ...+.+..+..... ...+......--..++.|...|+|.++|+.+.......
T Consensus 396 ~l~~LS~dg~h~s-----Gs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f------- 463 (1062)
T KOG1912|consen 396 SLISLSDDGSHSS-----GSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF------- 463 (1062)
T ss_pred cccchhhcCCCCC-----CceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh-------
Confidence 0001111110000 00111111111111 11111111112345678899999999999875543333
Q ss_pred cccccceEEEEEcCCCceEEeeecC--ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEE
Q 001318 735 NLRATKISRLIFTNSGNAILALASN--AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 812 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~ 812 (1101)
..|...|.++.|....+.+-.+.+. ..-. .....+.+-++.+|.-....-.....+.+|+.+.
T Consensus 464 svht~~VkgleW~g~sslvSfsys~~n~~sg---------------~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ir 528 (1062)
T KOG1912|consen 464 SVHTSLVKGLEWLGNSSLVSFSYSHVNSASG---------------GVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIR 528 (1062)
T ss_pred cccccceeeeeeccceeEEEeeecccccccc---------------ceeeeEEEEEcccccccccccCCCCCcCcceeee
Confidence 2388999999998887744433331 1000 0111234456667765443322334788999999
Q ss_pred EecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEe-cCCC----------------cEEEEEeccCeEEEE
Q 001318 813 LSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDN----------------NIIAIGMDDSSIQIY 874 (1101)
Q Consensus 813 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~----------------~~lasg~~dg~v~vw 874 (1101)
.|.-++|++..- +.-+.+||+++..+++...-.-.-|+.+.|+ | .- +..+..+ +..+++
T Consensus 529 vS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds--~es~~~ 605 (1062)
T KOG1912|consen 529 VSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDS--VESRIY 605 (1062)
T ss_pred ecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhhceeeecc--ccchhe
Confidence 999999999998 8889999999887776655444458889998 3 11 1333333 233344
Q ss_pred Eeec-------ceE-eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE
Q 001318 875 NVRV-------DEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 875 d~~~-------~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
.+.- +.. ....+...-.+.+++| .+..|+.|..+|.+++||+........+ ... .+. .......
T Consensus 606 ~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~--d~p-~~r---a~~l~~~ 677 (1062)
T KOG1912|consen 606 HITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVR--DSP-DPR---AHSLTFP 677 (1062)
T ss_pred ehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCcc--CCC-Cch---hhheecc
Confidence 3321 111 0111111223444677 4679999999999999998663221100 000 110 1223334
Q ss_pred EcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 001318 947 FHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1017 (1101)
Q Consensus 947 ~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~ 1017 (1101)
+-|....+++-...-+-+||.+....+..+.....+..+..+.+......++ ..|.++|+-........
T Consensus 678 ~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~~ 746 (1062)
T KOG1912|consen 678 QIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSPP 746 (1062)
T ss_pred cCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEEeccccCCc
Confidence 4454445555566678899999888877764222244555556654444444 34557777766555443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-17 Score=160.17 Aligned_cols=307 Identities=9% Similarity=0.045 Sum_probs=211.0
Q ss_pred cccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccC------CceeeeeeeeccccCCeeEEEEcCCCCeEEEEE
Q 001318 398 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG------GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 471 (1101)
Q Consensus 398 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~------~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s 471 (1101)
+..+-+.+|.+.|.++.||.++++||+|+.|..+++|+++. .+.+... -..|...|.|++|...++ .+.+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~--~~~H~SNIF~L~F~~~N~--~~~S 122 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM--EHPHRSNIFSLEFDLENR--FLYS 122 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceec--cCccccceEEEEEccCCe--eEec
Confidence 33445789999999999999999999999999999999863 2333211 124668999999998887 7999
Q ss_pred ecCCCcEEEEeCCCCceEEEecC--cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCce---eeecCCCCceeEE
Q 001318 472 CGDDKTIKVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTM 546 (1101)
Q Consensus 472 ~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~ 546 (1101)
|+.+++|...|+++.+.+..+.. ..+.|+.+..+|.. +.|++.+.+|.|.+||.+..... ..........+
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~-- 198 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY-- 198 (609)
T ss_pred CCCcceeEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccce--
Confidence 99999999999999999888752 33589999887763 68999999999999999875421 11122222333
Q ss_pred EEccCCceEEeccccCceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCce-eEEEcCC----CCCCCcCeEEEccCCCEE
Q 001318 547 AYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQL-LTSIDAD----GGLPASPRIRFNKDGCLL 620 (1101)
Q Consensus 547 ~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~----~~~~~v~~~~~s~~~~~l 620 (1101)
.+-|+|-. .+|++.+..+-+-+||.+..+. +...... .....-.++.|+|+|+.+
T Consensus 199 -------------------t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 199 -------------------TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQF 259 (609)
T ss_pred -------------------eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCee
Confidence 44444443 4567788889999999875431 2111111 111123678999999999
Q ss_pred EEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccC
Q 001318 621 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLAD 700 (1101)
Q Consensus 621 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1101)
.+--....-.+||+.+....+..+. |..... +.. -......+.+
T Consensus 260 msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY---------~N~--------------------------~T~KS~~F~~ 303 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRCFVLKSD-HNPNGY---------CNI--------------------------KTIKSMTFID 303 (609)
T ss_pred hhhhccCCCEEeeeecccceeEecc-CCCCcc---------eee--------------------------eeeeeeeeec
Confidence 8877766677788876523332222 111100 000 0111223445
Q ss_pred ccceeeccCCCcceeeeccccCCCcccccccc----------------CccccccceEEEEEcCCCceEEeeecCceEEe
Q 001318 701 VKPRITEESNDKSKVWKLTELSEPNQCRSLRL----------------PENLRATKISRLIFTNSGNAILALASNAIHLL 764 (1101)
Q Consensus 701 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 764 (1101)
...+++|+.+-.|.+|.+.......-+..+.- ...+|..-+..+.|+|...+|++.+-.+.++|
T Consensus 304 D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~Kl 383 (609)
T KOG4227|consen 304 DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKL 383 (609)
T ss_pred ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheec
Confidence 56689999999999999976544332211111 11678899999999999999999999999999
Q ss_pred eec
Q 001318 765 WKW 767 (1101)
Q Consensus 765 w~~ 767 (1101)
|.-
T Consensus 384 WS~ 386 (609)
T KOG4227|consen 384 WSD 386 (609)
T ss_pred ccc
Confidence 964
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=143.62 Aligned_cols=288 Identities=11% Similarity=0.121 Sum_probs=195.6
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..|.+-+++|.+++++++..+|.|.++.+..-..... ...|+...... ..|+.+++.++|. ..
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~e--qahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPE--QAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeec--cccCCCeeeeeee--hh
Confidence 3455667899999999999999999998854321110 11222222222 3499999999998 55
Q ss_pred EEEEEeCCeEEEEECCCCce------eeEe--cC-----CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee
Q 001318 819 YVMSASGGKISLFNMMTFKT------MATF--MP-----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 885 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~------~~~~--~~-----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l 885 (1101)
+|.+++||.|+=|....... +.+. .. .-.+|+++-..|..+.+|. ++.|+.++-||+++|+..+++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEE
Confidence 88899999999888754322 1111 11 2346899999995555555 458999999999999999999
Q ss_pred cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCC--CCCCCCeEEEEcCCCcEEEEEeCCeEE
Q 001318 886 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQDQIHFLVVHETQLA 963 (1101)
Q Consensus 886 ~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~dg~~la~~~d~~v~ 963 (1101)
+||++-|.++.--.....+.||++||++|+||.++++.... +....... .+...-.-.+..-+..+|+++....+.
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~--ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~ls 230 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM--IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLS 230 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE--eccccChhhcCcccCceeEEEeccCceEEecCCCcee
Confidence 99999999999866667899999999999999999764322 11111110 000111124556677799998888999
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEe
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1043 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~ 1043 (1101)
+|.+...++...+.. ..++..+.|- ...+++++....|.-|.+. |.+...+...... -+..+..-+
T Consensus 231 lwhLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~--------c~s~s~~~~ 296 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTA--------CYSASWQTS 296 (325)
T ss_pred EEeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccc--------eeeecccCC
Confidence 999999999988876 4578888885 4567778888889999874 5555444411111 221122233
Q ss_pred CCCCCEEEEEecCCcEEEE
Q 001318 1044 PQEPNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 1044 ~~d~~~l~s~~~dg~v~vW 1062 (1101)
| -+++-.++..+.+.|+
T Consensus 297 p--~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 297 P--IKFISIAGFSNKLHIL 313 (325)
T ss_pred c--eEEEEecccceeeeee
Confidence 3 3566666666666665
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-18 Score=186.32 Aligned_cols=285 Identities=19% Similarity=0.269 Sum_probs=212.6
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
-+.+|.+.|+|+.|...|.++++|+.|..|+||..+++.++. ...||.+.|+.++.+.++. ++++++.|..|++|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVW 259 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEE
Confidence 478999999999999999999999999999999999988776 6899999999999998887 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
.+.++.++..+.||++.|++++|+|.. +.+.||++++||.+- .... +.|...
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~-~~~~-------------y~prp~-------- 311 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARL-EPRI-------------YVPRPL-------- 311 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccc-cccc-------------cCCCCC--------
Confidence 999999999999999999999996643 778899999998871 1100 000000
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
+..++ ..+.++.|...+..+++++.|+.-..|...-.
T Consensus 312 ---------------------------~~~~~------------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---- 348 (1113)
T KOG0644|consen 312 ---------------------------KFTEK------------DLVDSILFENNGDRFLTGSRDGEARNHEFEQL---- 348 (1113)
T ss_pred ---------------------------Ccccc------------cceeeeeccccccccccccCCcccccchhhHh----
Confidence 00000 12334555556666777777776665543211
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
T Consensus 349 -------------------------------------------------------------------------------- 348 (1113)
T KOG0644|consen 349 -------------------------------------------------------------------------------- 348 (1113)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
++...+-.+++...|
T Consensus 349 -----------------------~~~~~~lif~t~ssd------------------------------------------ 363 (1113)
T KOG0644|consen 349 -----------------------AWRSNLLIFVTRSSD------------------------------------------ 363 (1113)
T ss_pred -----------------------hhhccceEEEecccc------------------------------------------
Confidence 000000001111110
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
-..+.+++- +..+.+|++.+|...+.+.+|...+..+.++|.+.++..+++.||...|||+-.|.
T Consensus 364 --------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 364 --------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred --------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 001233333 56789999999999999999999999999999888888899999999999998887
Q ss_pred Eeeee-cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcc
Q 001318 881 VKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 922 (1101)
Q Consensus 881 ~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~ 922 (1101)
.++.. .+| +.+..-+||+||..++....-|.+.|.....++
T Consensus 430 pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 430 PIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 66554 455 456677999999999988888888888765544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=190.56 Aligned_cols=278 Identities=13% Similarity=0.171 Sum_probs=209.9
Q ss_pred cCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCce----EEeeecCceEEeeeccccccCCCCceeeeec
Q 001318 708 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVA 783 (1101)
Q Consensus 708 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 783 (1101)
+.+.++.+|.+........+..... .....+-..++|.+.|.. |+.+..||.|.+|+......
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~----------- 102 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA----------- 102 (1049)
T ss_pred ccccccceeeecccCcccccccccc--ccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------
Confidence 4456777777665444332221111 114567788999988776 77777899999999743100
Q ss_pred CccccCCCccccccccCCCCCCCCeeEEEEecCCC-EEEEEe-CCeEEEEECCCCceeeEec--CCCCCeEEEEEecCCC
Q 001318 784 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDN 859 (1101)
Q Consensus 784 ~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~ 859 (1101)
+...........|.+.|..+.|++... +||+|+ ||.|.|||+...+...++. .....|.+++|+....
T Consensus 103 --------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 103 --------NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS 174 (1049)
T ss_pred --------CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh
Confidence 110000111224999999999999776 899998 8999999998766555542 2456899999998778
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCccc--CeeEEEEcCCC-CEEEEEeCCC---ceEEEeCCCcccccceeeecCC
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPT 933 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~--~V~~l~~s~dg-~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~ 933 (1101)
++||+++.+|.+.|||++..+.+-.+..|.+ .+..++|+|++ ..|++++.|. .|.+||++.- ...+++.+
T Consensus 175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----ssP~k~~~ 250 (1049)
T KOG0307|consen 175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----SSPLKILE 250 (1049)
T ss_pred HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----CCchhhhc
Confidence 9999999999999999999888877776655 46789999986 5666666653 5999998763 34566777
Q ss_pred CCCCCCCCCeEEEEcCCC-cEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC-EEEEEEcCCeEEEEE
Q 001318 934 GRTPTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFS 1010 (1101)
Q Consensus 934 ~~~~~~~~v~~~~~s~dg-~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s~s~dg~v~vwd 1010 (1101)
+|.. .|.++.|++.+ ++|++ +.|++|.+|+.++++.+..+.. ....+..+.|+|..- .+++++-||.|.||.
T Consensus 251 ~H~~---GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 251 GHQR---GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred cccc---ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhheeccceeeee
Confidence 8875 89999999977 67777 6999999999999999999874 468999999999655 788999999999999
Q ss_pred cCCce
Q 001318 1011 AANLK 1015 (1101)
Q Consensus 1011 ~~~~~ 1015 (1101)
+.++.
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 97665
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=177.82 Aligned_cols=306 Identities=17% Similarity=0.283 Sum_probs=211.0
Q ss_pred ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc---ccCeEEEeeeecCCccEEEEEecCCcEEEEec
Q 001318 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527 (1101)
Q Consensus 451 h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~ 527 (1101)
...+-..+.|+|-.. .++++...-.|+|||.+.++.+..|..+ ...|+.+++-...|..++++|+.||.||+|+-
T Consensus 1063 n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 344566788888888 5788887789999999999998887643 35688888877777789999999999999954
Q ss_pred CCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 001318 528 DNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 606 (1101)
Q Consensus 528 ~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 606 (1101)
-... ...++ |+ +|++-. ....+..+.. ..+.|.....+|+++|+-..|+|||......+..+..... .
T Consensus 1141 y~~~~~~~eL------VT--aw~~Ls-~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t 1209 (1387)
T KOG1517|consen 1141 YADKWKKPEL------VT--AWSSLS-DQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-T 1209 (1387)
T ss_pred cccccCCcee------EE--eecccc-ccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-c
Confidence 3221 11111 11 111111 0111112222 5677887778888888899999999999888888765433 3
Q ss_pred CcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccc
Q 001318 607 ASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 685 (1101)
Q Consensus 607 ~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1101)
.++++.-+- .|+.+++|..||.|++||.+.....
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--------------------------------------------- 1244 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--------------------------------------------- 1244 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCcc---------------------------------------------
Confidence 455554433 5799999999999999997654110
Q ss_pred cccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccc--eEEEEEcCCCce-EEeeecCceE
Q 001318 686 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK--ISRLIFTNSGNA-ILALASNAIH 762 (1101)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~s~~g~~-l~~~~~dg~i 762 (1101)
..|.+|. .|+.. |..+.+.+.|-. |++++.+|.|
T Consensus 1245 -------------------------s~v~~~R------------------~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1245 -------------------------SLVCVYR------------------EHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred -------------------------ccceeec------------------ccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 1122221 13333 888888886655 9999999999
Q ss_pred EeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEe
Q 001318 763 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF 842 (1101)
Q Consensus 763 ~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~ 842 (1101)
++||++.......... +.-|+ ..+..+++.++++...+|+|+.+.|+||++.. +.+..+
T Consensus 1282 ~~~DlR~~~~e~~~~i-----v~~~~---------------yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~ 1340 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTI-----VAHWE---------------YGSALTALTVHEHAPIIASGSAQLIKIYSLSG-EQLNII 1340 (1387)
T ss_pred EEEecccCccccccee-----eeccc---------------cCccceeeeeccCCCeeeecCcceEEEEecCh-hhhccc
Confidence 9999865311000000 00000 13358999999999999999999999999863 444443
Q ss_pred cC-------CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 843 MP-------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 843 ~~-------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
+. ..+.+.|++|+| ..-++|+|+.|.+|.||.....
T Consensus 1341 k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1341 KYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 32 235689999999 8889999999999999987654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=173.01 Aligned_cols=229 Identities=16% Similarity=0.286 Sum_probs=179.5
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEcc-----CCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 476 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~ 476 (1101)
.+..|.+.|+.++|.|-...|++++.||++++|+++ ....+.++.+|.+|.++|.|++..+++. .+.+|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477899999999999999999999999999999993 3345678889999999999999999999 799999999
Q ss_pred cEEEEeCC------CC----ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCC--Ccee
Q 001318 477 TIKVWDAT------NG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG--RWCT 544 (1101)
Q Consensus 477 ~i~iwd~~------~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~~v~ 544 (1101)
+|+.|++. +. .....+.||++.|+.++++... ..|++++.||+++.|+...... .++.... +...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999553 11 2335678999999999987665 5799999999999998876554 2222221 1112
Q ss_pred EEEEccCC--------c---------------eEEec------cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001318 545 TMAYSADG--------T---------------RTYQG------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 595 (1101)
Q Consensus 545 ~~~~s~~~--------~---------------~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 595 (1101)
++.+.... + .++.. .....+..+..+|.....+++..|+.|+++|..+++.
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 22221110 0 11111 1123466678889999999999999999999999999
Q ss_pred eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 596 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 596 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+.....+. ..++++++.|+|-+|++++.|+.+++|.+...
T Consensus 524 l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 524 LHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred chheeecc--ceecceeecCCCceEEeecCCceeehhhccch
Confidence 98887554 47999999999999999999999999987654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=152.23 Aligned_cols=241 Identities=14% Similarity=0.202 Sum_probs=183.8
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc--CeEEEEEeecceEe
Q 001318 805 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--SSIQIYNVRVDEVK 882 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d--g~v~vwd~~~~~~~ 882 (1101)
...+..+.|..+...|..|+....++|.................|..+-|+. .++|..+.+ +.+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 3456677799999999999966678888876554333333344577777876 366666654 35999999988877
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E--eC
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE 959 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~--~d 959 (1101)
..+. ...+|.+|.+. .++|+++=.+. |.|||+++.+. +.......+-...+.++.+++.+.++|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKL-----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccccee-----ehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7765 45679999995 45666665554 99999998543 3333322221234566666677789998 3 66
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe-EEEEEcCCceeeeecCCCcccCCCCCCCCccce
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1038 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1038 (1101)
|.|.+||+.+.+.+..+. .|.+.+.+++|++||.+|||+|+.|+ |||+.+.+|+.+..|+.... + +...
T Consensus 153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~Iy 222 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIY 222 (391)
T ss_pred ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEE
Confidence 899999999999988887 89999999999999999999999998 89999999999999985444 2 3344
Q ss_pred EEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1039 VIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1039 ~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+++|+| |+.+|++.|..++|+++++....
T Consensus 223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 999999 78999999999999999998766
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-16 Score=156.35 Aligned_cols=168 Identities=16% Similarity=0.234 Sum_probs=126.4
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC------CceEEEec-CcccCeEEEeeeecCCccEEEEEecC
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD 519 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d 519 (1101)
.+.+|.+.|+++.|+.+++ +|++|+.|..+++|++.. .+++.... .|...|.|++|. ....++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~--~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD--LENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc--cCCeeEecCCCc
Confidence 4668999999999999988 899999999999999863 45565553 356889999984 344799999999
Q ss_pred CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEE
Q 001318 520 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTS 598 (1101)
Q Consensus 520 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 598 (1101)
++|..-|+.+.+.+..+.... ..+.+.-+..+|..+.|++.+.++.|.+||.+... .+..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~-------------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENN-------------------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred ceeEeeecccceeeeeecccC-------------------cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 999999999876655443221 11245555666666889999999999999998765 3322
Q ss_pred EcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCc
Q 001318 599 IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 599 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+-.........++.|+| ...+|++.+..+-+-+||.+..
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 22222233567899999 5677888888899999998755
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-16 Score=151.94 Aligned_cols=259 Identities=15% Similarity=0.232 Sum_probs=187.8
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCC-------cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEE
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVG-------DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 413 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 413 (1101)
.+.|.+.|+.++-+|..+.+|+|...+. .+.||.+........ .. ..+....+-..+-+.|.|+
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~-------tlE~v~~Ldteavg~i~cv 129 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SS-------TLECVASLDTEAVGKINCV 129 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cc-------hhhHhhcCCHHHhCceeeE
Confidence 4457899999999999988999886632 467888754322210 00 0111111223566799999
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCCcee-eee--eeeccccCCeeEEEEcC--CCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQH--LEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~--~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
.|.|++..||+-. |..|.+|+++.+..+ ... ..-.+|....++-+|+| |+. .+++ ..|+++..||+++.++
T Consensus 130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~t-t~d~tl~~~D~RT~~~ 205 (370)
T KOG1007|consen 130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVAT-TSDSTLQFWDLRTMKK 205 (370)
T ss_pred EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEE-eCCCcEEEEEccchhh
Confidence 9999999999876 888999999987653 211 01123667788999998 565 3444 4578999999999888
Q ss_pred EEEe-cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeE
Q 001318 489 QYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566 (1101)
Q Consensus 489 ~~~~-~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~ 566 (1101)
...+ .+|...|..+.|+++.. .+|++|+.||.|++||.+..+ ++..+..|..+|.++.|.|.-.
T Consensus 206 ~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd------------- 271 (370)
T KOG1007|consen 206 NNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD------------- 271 (370)
T ss_pred hcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc-------------
Confidence 7666 46888899999977554 689999999999999998754 5678899999999999988765
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCc-----------------------------eeEEEcCCCCCCCcCeEEEcc-C
Q 001318 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------------------LLTSIDADGGLPASPRIRFNK-D 616 (1101)
Q Consensus 567 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~-~ 616 (1101)
+++++|+.|..|.+|...+-. .+.++. .+...|++++||. |
T Consensus 272 -------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 272 -------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSAD 342 (370)
T ss_pred -------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCC
Confidence 467888888888888653211 112333 3345799999998 5
Q ss_pred CCEEEEEeCCCcEEEEEec
Q 001318 617 GCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 617 ~~~l~~~~~dg~i~iw~~~ 635 (1101)
.-.+|+-+.||.+.|=.+.
T Consensus 343 PWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CeeEEEeccCceEEeecCC
Confidence 5567778999999876654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=157.03 Aligned_cols=151 Identities=18% Similarity=0.282 Sum_probs=118.5
Q ss_pred EEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEE
Q 001318 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 547 (1101)
Q Consensus 468 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 547 (1101)
.++++-..|+|++||..+|+.+..|+++...++.+.|......+.+++|+.||+|++||++.......+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~---------- 111 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS---------- 111 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee----------
Confidence 5788888999999999999999999999999999999765456789999999999999999865443222
Q ss_pred EccCCceEEeccccCceeEEEEcCCCCEEEEEe----CCCcEEEEECCCCce-eEEEcCCCCCCCcCeEEEcc-CCCEEE
Q 001318 548 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNK-DGCLLA 621 (1101)
Q Consensus 548 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~ 621 (1101)
+.++...++.+++.+..++.+++|. .+-.|.+||++..+. +..+. ..|...|+++.|+| +.++|+
T Consensus 112 --------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 112 --------WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred --------ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEE
Confidence 1122223555566655666677764 477899999998876 44443 45566899999999 788999
Q ss_pred EEeCCCcEEEEEecCc
Q 001318 622 VSTNDNGIKILATSDG 637 (1101)
Q Consensus 622 ~~~~dg~i~iw~~~~~ 637 (1101)
+|+.||.|.+||+...
T Consensus 183 SGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKD 198 (376)
T ss_pred eecccceEEeeecCCC
Confidence 9999999999998654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-15 Score=166.20 Aligned_cols=257 Identities=11% Similarity=0.090 Sum_probs=166.5
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECC-CCce--eeEecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeec
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV 878 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~ 878 (1101)
......++++|++++|+++. ++.|.+|++. +++. ..... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence 34567789999999998875 6889999986 3332 22222 234567899999 787777765 488999999974
Q ss_pred -ce---EeeeecCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcccccc---eeeecCCCCCCCCCCCeEEEEcCC
Q 001318 879 -DE---VKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 879 -~~---~~~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
+. .+..+.+ .....+++++|+|+++++++ .++.|.+||+++...... .......+ .....++|+||
T Consensus 112 ~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPN 185 (330)
T ss_pred CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCC
Confidence 32 2233332 23467789999999886554 568999999976322110 11122222 24578999999
Q ss_pred CcEEEEE--eCCeEEEEEcCC--c--eeeeeccC--C--CCCCCeeEEEEcCCCCEEEEEEc-CCeEEEEEcCCceeeee
Q 001318 951 QIHFLVV--HETQLAIFETTK--L--ECVKQWVP--R--ESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 951 g~~la~~--~d~~v~vwd~~~--~--~~~~~~~~--~--~h~~~i~~l~~spdg~~l~s~s~-dg~v~vwd~~~~~~~~~ 1019 (1101)
|++++++ .++.|.+|+++. + +.+..+.. . .+......+.|+|||++|+++.. ++.|.+|+++......+
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 9999884 478999999973 2 22333221 1 11223446899999999988854 78999999964321111
Q ss_pred cCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEec-CCcEEEEeccCCCccccCCCCC
Q 001318 1020 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESEGKWGVPPPV 1077 (1101)
Q Consensus 1020 ~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~-dg~v~vW~~~~~~~~~~~~~~~ 1077 (1101)
+. ...+.+ ..+..++++| ||++|+++.. +++|.+|++....+.+.....+
T Consensus 266 ~~--~~~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~ 316 (330)
T PRK11028 266 FE--GHQPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLTELGRY 316 (330)
T ss_pred Ee--EEEecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEEEcccc
Confidence 11 011111 2233689999 6777776664 8999999986554444443333
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=168.42 Aligned_cols=321 Identities=16% Similarity=0.204 Sum_probs=233.2
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCcccCeEEEeeeecCCccEEEEEecCCcEEEE
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~w 525 (1101)
.|.+|.+.|+.|.|...|. .+++|+.|..|.+||+.+++.+..+ .||...|....|.|..+...+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 5889999999999999999 8999999999999999999888776 579888888888888777899999999999987
Q ss_pred ecCCCCc---eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC
Q 001318 526 LYDNLGS---RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 602 (1101)
Q Consensus 526 d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 602 (1101)
.+...+. ...+..|.+.|..++.-|+.. ..|++++.|+.+.-+|++.+.+...+...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeeee
Confidence 7655433 234566777788888777765 46899999999999999887665544322
Q ss_pred CC--C--CCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccc
Q 001318 603 GG--L--PASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 677 (1101)
Q Consensus 603 ~~--~--~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1101)
.. . .....++..| +...+++|+.|..+++||.+.-.+. ...+ .+. .|.+..
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~--------~f~p~h----------- 330 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLD--------KFCPHH----------- 330 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhh--------hcCCcc-----------
Confidence 11 1 2456788888 4558999999999999987543110 0000 000 111110
Q ss_pred cccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeee
Q 001318 678 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 757 (1101)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 757 (1101)
+ . ......|++++|+.++.-++++.
T Consensus 331 --------------------------l-----------------------~------~d~~v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 331 --------------------------L-----------------------V------EDDPVNITGLVYSHDGSELLASY 355 (559)
T ss_pred --------------------------c-----------------------c------ccCcccceeEEecCCccceeeee
Confidence 0 0 01446789999999998899999
Q ss_pred cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE-ecCCCEEEEEeC-CeEEEEECCC
Q 001318 758 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMMT 835 (1101)
Q Consensus 758 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~-s~dg~~la~~sd-g~i~vwd~~~ 835 (1101)
.|-.|++++-..+.. .......++ ........+++.....|..+-| -|...|+++|+| |.|.||+-.+
T Consensus 356 nDe~IYLF~~~~~~G----~~p~~~s~~------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDG----SEPDPSSPR------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred cccceEEeccccccC----CCCCCCcch------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 999999985432211 000000000 1122222344333445777765 588999999997 9999999999
Q ss_pred CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 836 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 836 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
++.++.+.+...-|+||.-+| ---+||+.+-|.-|+||.-.+.
T Consensus 426 ~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 426 GEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred hHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCcc
Confidence 999999998888899999999 6779999999999999987443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-18 Score=184.34 Aligned_cols=245 Identities=18% Similarity=0.314 Sum_probs=188.3
Q ss_pred cceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEE
Q 001318 336 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 336 ~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 415 (1101)
+.+.++++|...|.|+.|...|.| +++|+.|..|+||..+++.++.. ..||.+.|+.++.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlav 240 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAV 240 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhcc
Confidence 345668899999999999999997 99999999999999999998874 8999999999999
Q ss_pred ecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE---e
Q 001318 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---F 492 (1101)
Q Consensus 416 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~ 492 (1101)
+.+..++|+++.|..|++|.+.++..+. .+.||.+.|++++|+|- .+.+.||++++||.+-.-.+.. +
T Consensus 241 s~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 241 SSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred chhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCC
Confidence 9999999999999999999999988766 68899999999999984 4778999999999872111111 1
Q ss_pred cC-cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcC
Q 001318 493 EG-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 571 (1101)
Q Consensus 493 ~~-h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 571 (1101)
+. ...-+.++.| ..++..+.+++.|+.-..|.+...... ...+.-+..+.+
T Consensus 312 ~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~~------~~~lif~t~ssd-------------------- 363 (1113)
T KOG0644|consen 312 KFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAWR------SNLLIFVTRSSD-------------------- 363 (1113)
T ss_pred Ccccccceeeeec--cccccccccccCCcccccchhhHhhhh------ccceEEEecccc--------------------
Confidence 11 1233444444 456678999999999888865431110 000000011101
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccc
Q 001318 572 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 572 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
...+.+++-.+..+++|++.+|..++.+.++.+ .+..+.++| +.+...+++.||...|||+-.|..
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 013466677788899999999999999887766 566799999 666777889999999999988833
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=151.31 Aligned_cols=308 Identities=12% Similarity=0.164 Sum_probs=197.4
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec-CcccCeEEEeeeecCCccEEEEEecCCcE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKI 522 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg~i 522 (1101)
+++.+++|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+...+ + ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p--~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP--N-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecC--C-cchhhcCCCceE
Confidence 4456889999999999988875 8999999999999999999888888 5677788776433 2 478999999999
Q ss_pred EEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEEc-
Q 001318 523 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-SIKFWDMDSVQLLTSID- 600 (1101)
Q Consensus 523 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~- 600 (1101)
.+|++....-... +.-.++++.|.+..- +.+.... ...++.-++.. .+.+-|......+...+
T Consensus 80 ~lw~ia~s~~i~i---~Si~~nslgFCrfSl-----~~~~k~~-------eqll~yp~rgsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 80 ILWTIAYSAFISI---HSIVVNSLGFCRFSL-----VKKPKNS-------EQLLEYPSRGSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred EEEEccCcceEEE---eeeecccccccccee-----ccCCCcc-------hhheecCCcccchhhhhccCccceeEccCc
Confidence 9999876333221 112222222221110 0000000 01111111100 02222222222222211
Q ss_pred -CCCCCCCcCeEEEcc-CC--CEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccc
Q 001318 601 -ADGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 676 (1101)
Q Consensus 601 -~~~~~~~v~~~~~s~-~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1101)
.....+.+.|..+.. ++ -++++|.++|.+.+||+.++...+ .+....
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-~~~~~~---------------------------- 195 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-QLPQSS---------------------------- 195 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee-cccccc----------------------------
Confidence 111223454444322 23 256778889999999998872222 121100
Q ss_pred ccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEee
Q 001318 677 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 756 (1101)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 756 (1101)
. ...+...|..++.++.|.+.-..=+.+
T Consensus 196 ----------------------------------------k------------v~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 196 ----------------------------------------K------------VESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred ----------------------------------------c------------cccchhhccCcceeeeechhhcCCcCC
Confidence 0 001112377889999998776666777
Q ss_pred ecCceEEeeeccccccCCCCceeeeecCccccCCCcccc-ccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECC
Q 001318 757 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM 834 (1101)
Q Consensus 757 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~-~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~ 834 (1101)
+.+..+..|+++.. +|.+. .....- .+-.+..+.+-||++.+|+++ |+.||||..+
T Consensus 224 ga~dkl~~~Sl~~s--------------------~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 224 GADDKLVMYSLNHS--------------------TGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred Cccccceeeeeccc--------------------cCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 77778888877432 11110 101111 234577888999999999999 9999999999
Q ss_pred CCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 835 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 835 ~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
+.+.+..++-|...|++++|+| +..++|.++.|++|.+|++
T Consensus 282 tl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 9999999999999999999999 8899999999999999986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=156.55 Aligned_cols=289 Identities=16% Similarity=0.191 Sum_probs=195.0
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC-CCeEEEEEecCCCcEEEEeCCCCceEEE--ecCcc
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHE 496 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h~ 496 (1101)
..+|++...|.|++||..+++.++ .+++|...++.+.|..+ +.+ .+.+|+.||+|++||+++...+.. +..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~---~fk~~~~~~N~vrf~~~ds~h-~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE---EFKGPPATTNGVRFISCDSPH-GVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh---eecCCCCcccceEEecCCCCC-eeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 568889999999999999988776 68889999999999875 333 799999999999999998765543 44455
Q ss_pred -cCeEEEeeeecCCccEEEEEec----CCcEEEEecCCCCc-ee-eecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 497 -APVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLGS-RV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 497 -~~v~~v~~~~~~~~~~l~s~~~----dg~i~~wd~~~~~~-~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
.+..+++ ...+++.+++|.. |-.|.+||++..++ +. -...|...|+++.|.|...
T Consensus 117 ~~~f~~ld--~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p---------------- 178 (376)
T KOG1188|consen 117 GTPFICLD--LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP---------------- 178 (376)
T ss_pred CCcceEee--ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC----------------
Confidence 3344443 3335567777653 56799999998776 33 3456778888888888766
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCc----eeEEEcCCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEecCcccccccc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+.|++|+.||-|.+||+.... ++.++. +...|.++.|..++ +.|.+-+..++..+|+++.+. ....+
T Consensus 179 ----nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~ 250 (376)
T KOG1188|consen 179 ----NLLLSGSVDGLVNLFDTKKDNEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWL 250 (376)
T ss_pred ----CeEEeecccceEEeeecCCCcchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcc
Confidence 789999999999999986542 223332 22358889999877 458888899999999999884 22222
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccC-CCcceeeeccccCC
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES-NDKSKVWKLTELSE 723 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~w~~~~~~~ 723 (1101)
........ ..... .... +.-+...-.+....+.++. .+...++-+.....
T Consensus 251 ~~~~~~~~--------d~r~~--------------------~~~d-Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s 301 (376)
T KOG1188|consen 251 ENPDVSAD--------DLRKE--------------------DNCD-YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSS 301 (376)
T ss_pred cCccchhh--------hHHhh--------------------hhhh-heeecccCCCcceEEEeccccCceeEEEeeeccc
Confidence 21100000 00000 0000 0001111123344444443 56677766654333
Q ss_pred CccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeec
Q 001318 724 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 767 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 767 (1101)
............+|..-|+++.|...+..+.+++.||.+.+|..
T Consensus 302 ~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 302 GSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 33333444444568888999999999999999999999999985
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=147.23 Aligned_cols=228 Identities=15% Similarity=0.228 Sum_probs=170.9
Q ss_pred CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeEEEEEcC-------CeEEEEEccC
Q 001318 367 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSR-------HIVQIYSYHG 438 (1101)
Q Consensus 367 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d-------~~i~iwd~~~ 438 (1101)
|+.|.+-+++.+.. .+...++..|.+.|+.++-+| |.+.|+++..+ ..+.||.+..
T Consensus 39 dNqVhll~~d~e~s----------------~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe 102 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGS----------------ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPE 102 (370)
T ss_pred cceeEEEEecCccc----------------hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccc
Confidence 56677666655432 234446888999999999999 77788887653 2478999865
Q ss_pred Cce------eeeeeeec-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce-EEEec-----CcccCeEEEeee
Q 001318 439 GDE------VRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFE-----GHEAPVYSVCPH 505 (1101)
Q Consensus 439 ~~~------~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-----~h~~~v~~v~~~ 505 (1101)
... +.....|. .+-+.|.|+.|.|++. .+++-. |..|.+|++..+.. +..+. +|....++-+|+
T Consensus 103 ~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~--klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 103 PLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD--KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWS 179 (370)
T ss_pred ccCccccchhhHhhcCCHHHhCceeeEEEcCCCC--eeEEec-cCceEEEEcccCcchheeecccccccccceecccccC
Confidence 322 11122233 4567899999999998 465554 88999999998776 33332 356677888898
Q ss_pred ecCCccEEEEEecCCcEEEEecCCCCceeee-cCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCc
Q 001318 506 HKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 584 (1101)
Q Consensus 506 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 584 (1101)
+.-+++.+++.+ |+++..||+++..+...+ ..|...|..+.|+|+-+ .+|++++.||.
T Consensus 180 pHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq--------------------~~lvt~gDdgy 238 (370)
T KOG1007|consen 180 PHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQ--------------------HILVTCGDDGY 238 (370)
T ss_pred CCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCce--------------------EEEEEcCCCcc
Confidence 888888777765 799999999988776655 45677788888888766 46889999999
Q ss_pred EEEEECCC-CceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecC
Q 001318 585 IKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 585 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
|++||.+. ..++..+..|.| .|.++.|+| ..+++++|+.|..|.+|....
T Consensus 239 vriWD~R~tk~pv~el~~HsH--WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 239 VRIWDTRKTKFPVQELPGHSH--WVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEEEeccCCCccccccCCCce--EEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 99999975 446777776666 899999999 567888999999999997653
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=142.89 Aligned_cols=255 Identities=15% Similarity=0.187 Sum_probs=175.5
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
..|.+-+++|.+++ +++|..+|.|.+..+.+--.-.. ........-...+|.++|+.++|. ..+|++|
T Consensus 11 ~tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~ 78 (325)
T KOG0649|consen 11 NTVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG 78 (325)
T ss_pred HHHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeec
Confidence 34667789999996 99999999999999865211110 000001111357999999999999 5667777
Q ss_pred EcCCeEEEEEccCCce---eeeeee--ecccc-----CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 426 YSRHIVQIYSYHGGDE---VRQHLE--IDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 426 ~~d~~i~iwd~~~~~~---~~~~~~--l~~h~-----~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
+. |.|+-|.+..... .+...+ ..-|. -.|+++-..|... -++.++.|+.++-||+++|+..++++||
T Consensus 79 gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 79 GD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred cC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCC
Confidence 64 9999998764322 111101 11222 3689999998877 4666678999999999999999999999
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
++.|.++.-. .....+++|+.||++|+||.++.+....+.....+ .....+...-| .+..-+..+
T Consensus 156 tDYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-----------~~lRp~~g~wi--gala~~edW 220 (325)
T KOG0649|consen 156 TDYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-----------NLLRPDWGKWI--GALAVNEDW 220 (325)
T ss_pred cceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccCh-----------hhcCcccCcee--EEEeccCce
Confidence 9999998852 22347999999999999999998877655432210 11111111122 233334457
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 576 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 576 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
+++|+ ...+.+|++++.++...+....+ +..+.|.. ..+++++..+.|.-|.+..
T Consensus 221 lvCGg-Gp~lslwhLrsse~t~vfpipa~---v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 221 LVCGG-GPKLSLWHLRSSESTCVFPIPAR---VHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred EEecC-CCceeEEeccCCCceEEEecccc---eeEeeeec--ceEEEeccccceeeeeecc
Confidence 77765 45799999999999888876654 66778854 4677777778888887653
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=169.12 Aligned_cols=203 Identities=15% Similarity=0.152 Sum_probs=151.8
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc---eEee
Q 001318 809 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKS 883 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~ 883 (1101)
.-+.|.....+|++++ -..|+|||.....++..+.. ....|+++.-+-..|.++|+|..||.|++||.+.. ..+.
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 3456666555666655 57899999998777777653 34567888766657899999999999999998753 3567
Q ss_pred eecCcccC--eeEEEEcCCCC-EEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC
Q 001318 884 KLKGHSKR--ITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 960 (1101)
Q Consensus 884 ~l~~h~~~--V~~l~~s~dg~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 960 (1101)
..+.|+.. |..+.+-+.|- .|++|+.||.|++||++.........+..... ..+..+++..+++...+|+|+.+
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~---yGs~lTal~VH~hapiiAsGs~q 1325 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE---YGSALTALTVHEHAPIIASGSAQ 1325 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc---cCccceeeeeccCCCeeeecCcc
Confidence 77889888 99999988765 49999999999999998853222222211110 01248999999999999997779
Q ss_pred eEEEEEcCCceeeeeccCC-----CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 001318 961 QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~~-----~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
.|+||++... .+..+... ...+.+.|++|.|-.-+||+|+.|.+|.||......
T Consensus 1326 ~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1326 LIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9999999743 33333221 125678999999999999999999999999877654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=170.02 Aligned_cols=263 Identities=20% Similarity=0.262 Sum_probs=193.0
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.....+.-...|+|++|+|....++|.|..+|.|.+||+..+...... ........|..+|+.+.|-
T Consensus 234 ~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 234 TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------ccccccccCCcCeEEEEEe
Confidence 344466678999999999999889999999999999999887652110 1112467899999999998
Q ss_pred cCCCe--EEEEEcCCeEEEEEccCCceeeeeeeec---------cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe---
Q 001318 417 PDGSL--FGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD--- 482 (1101)
Q Consensus 417 pdg~~--las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd--- 482 (1101)
.+-.- +++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+++|.|..=+
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccC
Confidence 85444 9999999999999887533211111111 12346899999998877 688999999987733
Q ss_pred CCCCc-----eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecC-CCCceeeecCCCCceeEEEEccCCceEE
Q 001318 483 ATNGA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 483 ~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
...+. .+..+..|.++|+++.+++-.. ..+++++ |.++++|... ...+...+..+...+++++|||-..
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp--- 454 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP--- 454 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc---
Confidence 22222 2335567899999999876554 3455555 9999999887 5566666676777788888888665
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
..|+++..||.|.+||+.... ++.+.... ....+.+.|+++|+.|++|...|.+.+|++
T Consensus 455 -----------------avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 455 -----------------AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred -----------------eEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 358888899999999997544 34443333 335677889999999999999999999998
Q ss_pred cCc
Q 001318 635 SDG 637 (1101)
Q Consensus 635 ~~~ 637 (1101)
...
T Consensus 516 ~~~ 518 (555)
T KOG1587|consen 516 SES 518 (555)
T ss_pred Cch
Confidence 644
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=165.39 Aligned_cols=276 Identities=17% Similarity=0.251 Sum_probs=182.9
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC--------CceEEEecCcccCeEEEeeeecCCccEEEEEec
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 518 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~ 518 (1101)
++..|.+.|..++|.+-.. .|++++.|+++++|+++. -+++.+|.+|.++|.|+++ ..+++.+++|+.
T Consensus 289 tl~s~~d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v--~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP--VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV--PSNGEHCYSGGI 364 (577)
T ss_pred eeecchhhhhhhhcCCCCC--eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe--cCCceEEEeecc
Confidence 5677999999999999888 799999999999999932 2567899999999999997 466789999999
Q ss_pred CCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 001318 519 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 598 (1101)
Q Consensus 519 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 598 (1101)
||+|+.|++........ .+. ... ....+.||.+ .++.+++++....|++++.||+++.|+.....+ .+
T Consensus 365 Dg~I~~w~~p~n~dp~d--s~d--p~v------l~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDD--SYD--PSV------LSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred CceeeeeccCCCCCccc--ccC--cch------hccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc-cc
Confidence 99999997763211110 000 000 1123444444 667777787778899999999999999876665 33
Q ss_pred EcCCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccc
Q 001318 599 IDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 677 (1101)
Q Consensus 599 ~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1101)
+........-.++.+-... .+.++...-+.-.+++.... .
T Consensus 433 f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~-s-------------------------------------- 473 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV-S-------------------------------------- 473 (577)
T ss_pred cCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh-h--------------------------------------
Confidence 3322221122333332211 11111111111111111111 0
Q ss_pred cccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeee
Q 001318 678 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 757 (1101)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 757 (1101)
.+.+.+ .+
T Consensus 474 -----------------------------------------------------------------~~~~~~-------s~ 481 (577)
T KOG0642|consen 474 -----------------------------------------------------------------DLLIFE-------SS 481 (577)
T ss_pred -----------------------------------------------------------------heeecc-------cc
Confidence 000000 00
Q ss_pred cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCC
Q 001318 758 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF 836 (1101)
Q Consensus 758 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~ 836 (1101)
..... .....+.-+...|.+.+.+++. |+.|+++|..++
T Consensus 482 ~~~~~----------------------------------------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 482 ASPGP----------------------------------------RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred CCCcc----------------------------------------cccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 00000 0122344556667777777777 899999999999
Q ss_pred ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc
Q 001318 837 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 837 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
..+.....|...++++++.| +|-+|++|+.||.+++|.+....++.....|..
T Consensus 522 ~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred ccchheeeccceecceeecC-CCceEEeecCCceeehhhccchheeeccccccc
Confidence 99999999999999999999 999999999999999999988777776666653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-14 Score=142.76 Aligned_cols=255 Identities=14% Similarity=0.171 Sum_probs=167.2
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecC---CCCCeEEEEEecCCCcEEEEEe--ccCeEEEEEeec
Q 001318 804 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRV 878 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~ 878 (1101)
....|.++.+. .+.|+++-.+.|+|||+++.+.++++.. +...+.++++++ ++.+||.=+ ..|.|.|||+.+
T Consensus 86 fpt~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEEc--cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc
Confidence 35567777764 4577777777799999999999988754 344567777777 677888743 568999999999
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCc-eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 956 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~- 956 (1101)
-+.+..+.+|.+++.+++|+++|.+|||++.-|+ |||+.+..|++ ..+..+|... ..|.+++|+||+.+|++
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k----l~eFRRG~~~--~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK----LYEFRRGTYP--VSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE----eeeeeCCcee--eEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999988 68999998764 4455555543 68899999999999999
Q ss_pred EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCc
Q 001318 957 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1035 (1101)
Q Consensus 957 ~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1035 (1101)
+..++|++|.+.+-..-..-.+. ...-..-.++ +.+. +. -.+.-.+||..- .....+ ++.. +.-
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~--~~~~~~~~~s---k~~~-sylps~V~~~~~~~R--~FAt~~----l~~s---~~~ 301 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPT--AGTSWFGKVS---KAAT-SYLPSQVSSVLDQSR--KFATAK----LPES---GRK 301 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCC--CCCcccchhh---hhhh-hhcchhhhhhhhhcc--ceeEEE----ccCC---Ccc
Confidence 57789999998765421110000 0000000011 0001 10 011122355432 222222 2221 101
Q ss_pred cceEEEEeC-CCCCEEEEEecCCcEEEEeccCCC--ccccCCCCCCCCCCCC
Q 001318 1036 HPLVIAAHP-QEPNEFALGLSDGGVHVFEPLESE--GKWGVPPPVDNGSTSS 1084 (1101)
Q Consensus 1036 ~~~~i~~~~-~d~~~l~s~~~dg~v~vW~~~~~~--~~~~~~~~~~~~~~~~ 1084 (1101)
. .+++.+ +...++..++.||.++.+++.-.+ +.+-+.+-+-.|.+..
T Consensus 302 ~--~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~~t 351 (391)
T KOG2110|consen 302 N--ICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSIDT 351 (391)
T ss_pred c--eEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCcccc
Confidence 1 233432 256789999999999999996643 4444444444454443
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-16 Score=159.95 Aligned_cols=275 Identities=12% Similarity=0.159 Sum_probs=203.5
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec--C
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 418 (1101)
+-.|.+.|+.|.|...|. +|++|+.|..|.+||+..++.... ...||...|..-.|-| +
T Consensus 138 L~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~ 198 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSG 198 (559)
T ss_pred ccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCC
Confidence 335999999999999999 599999999999999999887654 4679999999999998 6
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe---cCc
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGH 495 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h 495 (1101)
.+.+++++.||.|++=.+...........+..|.++|.-++.-|+..+ .|.+++.|+.+.-.|++.+.....+ ..+
T Consensus 199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccC
Confidence 678999999999999887655445545567789999999999999887 7999999999999999887654333 223
Q ss_pred cc---CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 496 EA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 496 ~~---~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
.. ..+.++..+... ..+++++.|..+++||.+.-..... .+.+. .|.|. .+.......|+++.|+.+
T Consensus 278 ~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~----n~~~~--~f~p~---hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEEN----NGVLD--KFCPH---HLVEDDPVNITGLVYSHD 347 (559)
T ss_pred CccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccc----cchhh--hcCCc---cccccCcccceeEEecCC
Confidence 33 355667655443 5899999999999999875332210 00000 01111 111122336777777777
Q ss_pred CCEEEEEeCCCcEEEEECCC--C----------ceeEE-EcCCCCCCCcCeEEE-ccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 573 KNRFLAAGDDFSIKFWDMDS--V----------QLLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~--~----------~~~~~-~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
+.-++++..|-.|++++-.- | ..+.. +++|.....|..+-| -|...++++|++-|.|.||+-.++
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~- 426 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG- 426 (559)
T ss_pred ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-
Confidence 77788888888999995432 2 22233 677777677888875 568899999999999999998888
Q ss_pred cccccccc
Q 001318 639 RLLRTFEN 646 (1101)
Q Consensus 639 ~~~~~~~~ 646 (1101)
+.++.+++
T Consensus 427 eii~~Meg 434 (559)
T KOG1334|consen 427 EIIRFMEG 434 (559)
T ss_pred HHHHHhhc
Confidence 66666654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-15 Score=143.22 Aligned_cols=253 Identities=16% Similarity=0.260 Sum_probs=186.4
Q ss_pred cccCCCCcEEEEEecCCC----eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 341 TLNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~----~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.+.|.-+++.+.|.|+.+ .||||.+ ..+++|.+...+..... ...+....-..+..++++..|+
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWn 159 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWN 159 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh----------hhhhccCcccccCCcccccccc
Confidence 467999999999999873 3677655 79999998753221100 0011111234567899999999
Q ss_pred c-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe---
Q 001318 417 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--- 492 (1101)
Q Consensus 417 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--- 492 (1101)
. |-++|.+++-|-+..|||++++..-.....|-+|...|..++|...+.+ ++++.|.||+||++|++.-+.-..+
T Consensus 160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecC
Confidence 8 8899999999999999999997432222347789999999999998877 8999999999999999876543322
Q ss_pred cCcccCeEEEeeeecCCccEEEEEecC-CcEEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEc
Q 001318 493 EGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 570 (1101)
.....+...++|+. .|-+++++-..| ..|.+.|++... ....+..|...|..++|.|...
T Consensus 239 p~~~~pLlRLswnk-qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~----------------- 300 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNK-QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS----------------- 300 (364)
T ss_pred CCCCCcceeeccCc-CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC-----------------
Confidence 22245667788864 445678877765 578899998764 4567899999999999999876
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc------eeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEE
Q 001318 571 TTKNRFLAAGDDFSIKFWDMDSVQ------LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 571 ~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 631 (1101)
..+.++|.|..+-+||+...- ++..+. ....|+.+.|++ .+.+++++.. +.+.+
T Consensus 301 ---~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 301 ---SHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ---ceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 679999999999999997532 222222 234689999997 6778887764 44443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-14 Score=137.84 Aligned_cols=255 Identities=15% Similarity=0.242 Sum_probs=179.5
Q ss_pred eecccCCCCcEEEEEe--cCCCeEEEEEec----CCcEEEEeCC--CcceeEeeeeeeeecCCCCcccccccccCCCCCe
Q 001318 339 TRTLNQGSSPMSMDFH--PVQQTLLLVGTN----VGDIGLWEVG--SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 410 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~s--pdg~~llatg~~----dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 410 (1101)
.....-.-.+.++.|| |+.++.||.|+. .+.|.|-.+. +++.+.. .-..|.-++
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~YP~ 99 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHPYPV 99 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCCCCc
Confidence 4455556778889998 667777999986 3345554433 3333221 224788999
Q ss_pred EEEEEecCCC-----eEEEEEcCCeEEEEEccCCc-eeeeeeee-----ccccCCeeEEEEcCCCCeEEEEEecCCCcEE
Q 001318 411 NRVIWSPDGS-----LFGVAYSRHIVQIYSYHGGD-EVRQHLEI-----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 411 ~~l~~spdg~-----~las~~~d~~i~iwd~~~~~-~~~~~~~l-----~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 479 (1101)
+.+-|.||.+ +||+++ ..+++|.+...+ .+.....+ ..+..++++..|+.-... ++.+++-|.+..
T Consensus 100 tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCT 176 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCT 176 (364)
T ss_pred cceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEE
Confidence 9999999873 566654 469999987422 12211122 246679999999987766 899999999999
Q ss_pred EEeCCCCce---EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceee-ecCC--CCceeEEEEccCCc
Q 001318 480 VWDATNGAK---QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAP--GRWCTTMAYSADGT 553 (1101)
Q Consensus 480 iwd~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~--~~~v~~~~~s~~~~ 553 (1101)
|||+++|.. ...+-+|..+|..++|.. +..+.+++.+.||.+|+||++..+.... ++.+ ..+...++|++...
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999998743 456778999999999975 4447999999999999999997554322 2222 22333344433332
Q ss_pred eEEeccccCceeEEEEcCCCCEEEEEe-CCCcEEEEECCCC-ceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEE
Q 001318 554 RTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIK 630 (1101)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 630 (1101)
+++++-. ....|.|.|++.. .++..+..|. ..|+.++|.| ....|.++++|..+.
T Consensus 256 --------------------nymATf~~dS~~V~iLDiR~P~tpva~L~~H~--a~VNgIaWaPhS~~hictaGDD~qal 313 (364)
T KOG0290|consen 256 --------------------NYMATFAMDSNKVVILDIRVPCTPVARLRNHQ--ASVNGIAWAPHSSSHICTAGDDCQAL 313 (364)
T ss_pred --------------------hHHhhhhcCCceEEEEEecCCCcceehhhcCc--ccccceEecCCCCceeeecCCcceEE
Confidence 4566644 4467899999864 4667777554 4799999999 677999999999999
Q ss_pred EEEecCc
Q 001318 631 ILATSDG 637 (1101)
Q Consensus 631 iw~~~~~ 637 (1101)
+||+...
T Consensus 314 iWDl~q~ 320 (364)
T KOG0290|consen 314 IWDLQQM 320 (364)
T ss_pred EEecccc
Confidence 9998754
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=156.39 Aligned_cols=199 Identities=16% Similarity=0.180 Sum_probs=160.7
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecC
Q 001318 809 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 887 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 887 (1101)
..++|+.+|..+++++ ||++|+|+..+...+.....|..+|.++.||| |+++|++-+.| ..+||++.++..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999888888888888999999999999 99999999999 999999999977766643
Q ss_pred --cccCeeEEEEcCCC-----CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeC
Q 001318 888 --HSKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE 959 (1101)
Q Consensus 888 --h~~~V~~l~~s~dg-----~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d 959 (1101)
-......+.|+.|+ ...+....-+.|+.|++..+.............. ...|++++.|+||+++|. +.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~---~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR---FKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc---cCcceeEEEcCCCcEEEEeccC
Confidence 22346678888887 3344455567788888776544211111111111 137899999999999999 589
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
|.|.|++..+.+++.... +.|..-|+.+.|+||.+++++.+.|.++.|..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999887654 68999999999999999999999999999987754
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=160.01 Aligned_cols=285 Identities=16% Similarity=0.164 Sum_probs=192.0
Q ss_pred CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce--EEE----ecCcccCeEEE
Q 001318 429 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYI----FEGHEAPVYSV 502 (1101)
Q Consensus 429 ~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~----~~~h~~~v~~v 502 (1101)
+.+.||+++...... ..+. -...|.+++|+|.... +++.|..+|.|.+||++.+.. ... ...|..+++.+
T Consensus 222 ~~~~vW~~~~p~~Pe--~~~~-~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE--LVLE-SPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCce--EEEe-cCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 479999999863222 2232 4678999999999887 789999999999999987765 222 23588899999
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
.|..+..+.-+++++.||.|..|+++......... ....
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~---------------------------------------~~~~-- 336 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL---------------------------------------LLES-- 336 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhc---------------------------------------cccc--
Confidence 98877665668888889999999766432211000 0000
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
....+. . ......++++.|.+ +...+++|+++|.|.--+-........
T Consensus 337 ------~~~~~~---~---~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------------------- 385 (555)
T KOG1587|consen 337 ------KKHKGQ---Q---SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------------------- 385 (555)
T ss_pred ------cccccc---c---cccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-------------------
Confidence 000000 0 01123467788888 677899999999876532211100000
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
T Consensus 386 -------------------------------------------------------------------------------- 385 (555)
T KOG1587|consen 386 -------------------------------------------------------------------------------- 385 (555)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC-EE
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YV 820 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~-~l 820 (1101)
+.|.+-. ....|.+.|+++.++|-+. .+
T Consensus 386 --~~~~~~~-------------------------------------------------~~~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 386 --VSYKGHS-------------------------------------------------TFITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred --ccccccc-------------------------------------------------cccccCcceEeeecCCCcccee
Confidence 0000000 0001666677777777654 34
Q ss_pred EEEeCCeEEEEECC-CCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc--eEeeeecCcccCeeEEEE
Q 001318 821 MSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAF 897 (1101)
Q Consensus 821 a~~sdg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l~~h~~~V~~l~~ 897 (1101)
.+++|-+++||... ....+..+..+...+++++|||.....+|++..||.|.|||+... ..+.+..-+....+.+.|
T Consensus 415 ls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~ 494 (555)
T KOG1587|consen 415 LSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW 494 (555)
T ss_pred eeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec
Confidence 44448888888876 555566666677779999999977789999999999999999753 344444445667788899
Q ss_pred cCCCCEEEEEeCCCceEEEeCCC
Q 001318 898 SHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 898 s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
+++|+.|+.|+..|++.+|++..
T Consensus 495 s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 495 SPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCCcEEEEecCCCcEEEEEcCc
Confidence 99999999999999999999965
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=154.45 Aligned_cols=200 Identities=17% Similarity=0.162 Sum_probs=151.3
Q ss_pred EEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceee
Q 001318 850 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL 929 (1101)
Q Consensus 850 ~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 929 (1101)
.+++|+. +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||+++++...
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~----- 220 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL----- 220 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh-----
Confidence 7899999 89999999999999999988888788888899999999999999999999999 7999999997321
Q ss_pred ecCCCCCCCCCCCeEEEEcCCC---c-EEEE-E-eCCeEEEEEcCCcee---eeeccCCCCCCCeeEEEEcCCCCEEEEE
Q 001318 930 QIPTGRTPTAQSDTRVQFHQDQ---I-HFLV-V-HETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 1000 (1101)
Q Consensus 930 ~~~~~~~~~~~~v~~~~~s~dg---~-~la~-~-~d~~v~vwd~~~~~~---~~~~~~~~h~~~i~~l~~spdg~~l~s~ 1000 (1101)
+.... .........+.|+.|+ . ++++ . .-+.|+.||+..... .+....-.-...|+++++|+||++++.|
T Consensus 221 a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 221 ARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 11110 1111356788898887 3 3333 2 445666666543222 1111111124589999999999999999
Q ss_pred EcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCC
Q 001318 1001 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1001 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
+.||.|.|++..+.+.+.-++ .-| . ..+..+.|+| |.+++++.+.|....|..+.-.
T Consensus 300 T~dGsVai~~~~~lq~~~~vk------~aH-~--~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVK------EAH-L--GFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ccCCcEEEEEeceeeeeEeeh------hhh-e--eeeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence 999999999999888776554 222 2 2344999999 7899999999999999988653
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-15 Score=153.51 Aligned_cols=208 Identities=17% Similarity=0.218 Sum_probs=162.0
Q ss_pred CccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCcee
Q 001318 700 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT 779 (1101)
Q Consensus 700 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 779 (1101)
....++.++.||.+.+.+-....+. ....|.+.|.+-.|+|||.-|++++.||.|++|.-
T Consensus 74 ~~d~~~i~s~DGkf~il~k~~rVE~--------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr------------ 133 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKSARVER--------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR------------ 133 (737)
T ss_pred CcceEEEEcCCceEEEecccchhhh--------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEec------------
Confidence 3467888888998887764432111 11448899999999999999999999999999974
Q ss_pred eeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCC
Q 001318 780 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 859 (1101)
Q Consensus 780 ~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 859 (1101)
+|.+... +.. ....|+|++|.|+...++.+..+.+.+=.+.....+-..+.|++-|.++.|++ -+
T Consensus 134 -----------sGMLRSt-l~Q--~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s 198 (737)
T KOG1524|consen 134 -----------SGMLRST-VVQ--NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QS 198 (737)
T ss_pred -----------cchHHHH-Hhh--cCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCc-cc
Confidence 3332222 111 57789999999999999998888888888887777788899999999999999 88
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
.++++|++|-..+|||-. |..+..-..|.-+|++++|.|| +.++.++. .++|+=..+.
T Consensus 199 ~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~------------------- 256 (737)
T KOG1524|consen 199 NIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSPRV------------------- 256 (737)
T ss_pred cceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeeecCCCc-------------------
Confidence 999999999999999965 6666666789999999999999 55555553 3454221111
Q ss_pred CCCeEEEEcCCCcEEEEE-eCCeEEE
Q 001318 940 QSDTRVQFHQDQIHFLVV-HETQLAI 964 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~~-~d~~v~v 964 (1101)
++|..++||+||..++++ ..|.+.+
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEE
Confidence 588999999999999984 6665543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-12 Score=145.99 Aligned_cols=151 Identities=17% Similarity=0.302 Sum_probs=124.1
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCe
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 430 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 430 (1101)
+.++++.-| +++|+.-+.|++|+....+... .+.+|.+.|..+.||-||+++++.|+|.+
T Consensus 139 ~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCcc
Confidence 345666665 8999999999999987222111 38899999999999999999999999999
Q ss_pred EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc-CeEEEeeeecCC
Q 001318 431 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-PVYSVCPHHKEN 509 (1101)
Q Consensus 431 i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~~~ 509 (1101)
+++|++++++... .+.-+|...|..+.|.|+ .++|++.|.+.++|+ ..+..+.++.+|.+ .+..++.. .+
T Consensus 199 iRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~--~~ 269 (967)
T KOG0974|consen 199 IRLWPIDSREVLG--CTGFGHSARVWACCFLPN----RIITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVP--IG 269 (967)
T ss_pred eeeeecccccccC--cccccccceeEEEEeccc----eeEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEc--CC
Confidence 9999999987665 246689999999999988 399999999999997 55666668877754 47777763 44
Q ss_pred ccEEEEEecCCcEEEEecCCC
Q 001318 510 IQFIFSTALDGKIKAWLYDNL 530 (1101)
Q Consensus 510 ~~~l~s~~~dg~i~~wd~~~~ 530 (1101)
...+++++.|+.+++|++...
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceEEEeeccCcchhhhhhhcc
Confidence 478999999999999998764
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=139.71 Aligned_cols=254 Identities=14% Similarity=0.150 Sum_probs=177.9
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
..+|+|.||++|++. +|++-....|.||.....+.-. ..+++..|...|+++.|+|.++.|++
T Consensus 10 ~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCce-EEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCceeE
Confidence 578999999999995 8998888999999987665211 22368899999999999999999999
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE----EEecCcccCeE
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVY 500 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~ 500 (1101)
|+.|..-+||....+...++..++..|...++++.|+|.+. .+++|+.-+.|.||-.+...-= +.-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999955555666667888999999999999999 7999999999999987654321 12234677899
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec-cccCceeEEEEcCCCCEEEEE
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
++.|++.+ -+|+.|+.|+..|++..--.... +...+..+-..+ |-|.....- ...+-+..+.|+|+|+.|+-.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vd-ekpap~pWgsk~---PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVD-EKPAPTPWGSKM---PFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeeccc-cCCCCCCCccCC---cHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 99997654 68999999999999854211000 000000000000 001111111 223456677888888899999
Q ss_pred eCCCcEEEEECCCCc-eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC
Q 001318 580 GDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 626 (1101)
+.|..+.+-|..... .+....... -+..++.|-.+...++ ++.|
T Consensus 225 ~Hds~v~~~da~~p~~~v~~~~~~~--lP~ls~~~ise~~vv~-ag~~ 269 (361)
T KOG1523|consen 225 GHDSTVSFVDAAGPSERVQSVATAQ--LPLLSVSWISENSVVA-AGYD 269 (361)
T ss_pred cCCCceEEeecCCCchhccchhhcc--CCceeeEeecCCceee-cCCC
Confidence 999999999987664 333333222 3456677765544444 3344
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.1e-14 Score=159.24 Aligned_cols=214 Identities=11% Similarity=0.110 Sum_probs=151.2
Q ss_pred cccCCCCCeEEEEEecC-CCeEEEEEcCCeEEEEEccCC----ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC
Q 001318 402 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 476 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~----~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~ 476 (1101)
.+..|...|..++.+++ +.++++||.||+|++||...- ...+...++......+.++.+.+.+. .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 37789999999999885 499999999999999998631 22333334444567899999999999 688889999
Q ss_pred cEEEEeCCC--Cc-----eEEEecCc-ccCeEEE-eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEE
Q 001318 477 TIKVWDATN--GA-----KQYIFEGH-EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 547 (1101)
Q Consensus 477 ~i~iwd~~~--~~-----~~~~~~~h-~~~v~~v-~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 547 (1101)
.|++.++.. .+ +.+....+ .+.+.++ ++........++.+..-+.|..||.+.......++...
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~------- 1193 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL------- 1193 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-------
Confidence 999999875 21 11222222 2333333 33322222478888888999999998765544332211
Q ss_pred EccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccC---CCEEEEEe
Q 001318 548 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAVST 624 (1101)
Q Consensus 548 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~ 624 (1101)
+.+.++.++++|.++++++|...|.+.+||++-+.++.......+ ..++.+..+|- ....++++
T Consensus 1194 ------------~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1194 ------------RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred ------------cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEec
Confidence 122455566666667999999999999999999998888865443 56777777763 24555444
Q ss_pred --CCCcEEEEEecCc
Q 001318 625 --NDNGIKILATSDG 637 (1101)
Q Consensus 625 --~dg~i~iw~~~~~ 637 (1101)
..+.|.+|++.+|
T Consensus 1261 ~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1261 SSSNNEVSTWNMETG 1275 (1431)
T ss_pred ccCCCceeeeecccC
Confidence 4788999999998
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=141.50 Aligned_cols=209 Identities=15% Similarity=0.186 Sum_probs=161.8
Q ss_pred CCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC-C
Q 001318 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-N 485 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~ 485 (1101)
..+|+|.||++|+..+|++-....|.||.....+......++..|...|+.|.|+|... .|++|+.|..-+||... .
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence 45899999999999999999999999999999887778889999999999999999998 59999999999999983 3
Q ss_pred Cc--eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCc
Q 001318 486 GA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563 (1101)
Q Consensus 486 ~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 563 (1101)
++ +.-.+..+....+++.|++.. +.|++|+.-..|.+|-++....=..-. | +.......
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsK-h----------------ikkPirSt 148 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSK-H----------------IKKPIRST 148 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhh-h----------------hCCccccc
Confidence 33 334556688899999997655 689999999999998765432211000 0 00011125
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECC-----C-------------CceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC
Q 001318 564 LGVVQFDTTKNRFLAAGDDFSIKFWDMD-----S-------------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 625 (1101)
Q Consensus 564 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 625 (1101)
+.+++|+|++-++++|+.|+..|++..- + |+++..+. ...+.+..+.|+|+|..|+-.+.
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecC
Confidence 6677788887889999999999999641 1 11222222 23357899999999999999999
Q ss_pred CCcEEEEEecCcc
Q 001318 626 DNGIKILATSDGI 638 (1101)
Q Consensus 626 dg~i~iw~~~~~~ 638 (1101)
|.++.+-|...+.
T Consensus 227 ds~v~~~da~~p~ 239 (361)
T KOG1523|consen 227 DSTVSFVDAAGPS 239 (361)
T ss_pred CCceEEeecCCCc
Confidence 9999999887664
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=157.91 Aligned_cols=268 Identities=15% Similarity=0.167 Sum_probs=179.3
Q ss_pred eeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 338 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 338 ~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
+.++..|...|..++.++....+++|||.||+|++||...-..-. ..++ ...++.-....+.++.+.+
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEEEEecc
Confidence 455556999999999988774479999999999999986532210 0000 1112333467899999999
Q ss_pred CCCeEEEEEcCCeEEEEEccCC--ceee--eeee--eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGG--DEVR--QHLE--IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 491 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~--~~~~--~~~~--l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 491 (1101)
.|..+|+++.||.|++.+++.. +... +... +......|..-+|....+...++.+..-+.|..||++......+
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 9999999999999999998762 1111 1111 12222234555665554433678888889999999988776655
Q ss_pred ec--CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCC-CceeEEEEccCCceEEeccccCceeEEE
Q 001318 492 FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 492 ~~--~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
++ ...+.|++++.+ +.+.+++.|+..|.+.+||++-...+..+..+. .++..+...+-.
T Consensus 1189 lk~~~~hG~vTSi~id--p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~---------------- 1250 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVID--PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY---------------- 1250 (1431)
T ss_pred hhcCccccceeEEEec--CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC----------------
Confidence 53 345779999974 555799999999999999999877666554332 344444433321
Q ss_pred EcCCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCC-----------------CCCcCeEEEccCCCEEEEEeCCCcE
Q 001318 569 FDTTKNRFLAAG--DDFSIKFWDMDSVQLLTSIDADGG-----------------LPASPRIRFNKDGCLLAVSTNDNGI 629 (1101)
Q Consensus 569 ~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~i 629 (1101)
+.....++++ ..+.|.+|++.+|.....+..... ......+.+...+..+++|+.|..|
T Consensus 1251 --~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1251 --PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred --CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 2223344433 578899999999877666643211 1111223344456688999999999
Q ss_pred EEEEecCc
Q 001318 630 KILATSDG 637 (1101)
Q Consensus 630 ~iw~~~~~ 637 (1101)
+.||....
T Consensus 1329 R~wD~~~p 1336 (1431)
T KOG1240|consen 1329 RKWDPTRP 1336 (1431)
T ss_pred eeccCCCc
Confidence 99998776
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.3e-13 Score=144.38 Aligned_cols=325 Identities=12% Similarity=0.146 Sum_probs=190.4
Q ss_pred EEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001318 513 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS 592 (1101)
Q Consensus 513 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 592 (1101)
+++-..++.|.+.|..+.+....+.........+. ++|||+++++++.||.|.++|+.+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~---------------------~s~Dgr~~yv~~rdg~vsviD~~~ 67 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLK---------------------FSPDGRYLYVANRDGTVSVIDLAT 67 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE----------------------TT-SSEEEEEETTSEEEEEETTS
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEE---------------------ecCCCCEEEEEcCCCeEEEEECCc
Confidence 35566789999999998777766655433222333 455556788889999999999999
Q ss_pred CceeEEEcCCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhh
Q 001318 593 VQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAA 671 (1101)
Q Consensus 593 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1101)
++.+.+++.... ..++++|+||++++++. .++.+.++|..+. +.++.+.......
T Consensus 68 ~~~v~~i~~G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~-------------------- 123 (369)
T PF02239_consen 68 GKVVATIKVGGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPV-------------------- 123 (369)
T ss_dssp SSEEEEEE-SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-T--------------------
T ss_pred ccEEEEEecCCC---cceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccc--------------------
Confidence 999999875433 67899999999999775 5899999998877 4444432111000
Q ss_pred hhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCc
Q 001318 672 AATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN 751 (1101)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 751 (1101)
.....++.++..++...
T Consensus 124 ---------------------------------------------------------------~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 124 ---------------------------------------------------------------DGPESRVAAIVASPGRP 140 (369)
T ss_dssp ---------------------------------------------------------------TTS---EEEEEE-SSSS
T ss_pred ---------------------------------------------------------------cccCCCceeEEecCCCC
Confidence 00234667777788777
Q ss_pred eEEeeecC-ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeE
Q 001318 752 AILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKI 828 (1101)
Q Consensus 752 ~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i 828 (1101)
.++..-.+ +.|.+-|+.... ......+ ..........|+|+++|++++. ++.|
T Consensus 141 ~fVv~lkd~~~I~vVdy~d~~---------------------~~~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSDPK---------------------NLKVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp EEEEEETTTTEEEEEETTTSS---------------------CEEEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred EEEEEEccCCeEEEEEecccc---------------------ccceeee---cccccccccccCcccceeeeccccccee
Confidence 55555444 666665542210 0000000 0234567789999999988876 6889
Q ss_pred EEEECCCCceeeEecC----CCCCeEEEEEecC---------CCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEE
Q 001318 829 SLFNMMTFKTMATFMP----PPPAATFLAFHPQ---------DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 895 (1101)
Q Consensus 829 ~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~---------d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 895 (1101)
-++|.++++.+..+.. |......+ .+|. .+...++.-....+.+||..+.+.++++....+. .-+
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi 274 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI 274 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E
T ss_pred EEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee
Confidence 9999999887765532 22222222 2221 1222212222335556777777777777766555 667
Q ss_pred EEcCCCCEEEEE----eCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCce
Q 001318 896 AFSHALNVLVSS----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 971 (1101)
Q Consensus 896 ~~s~dg~~l~s~----s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~ 971 (1101)
..+||+++|.+. ...+ +|.++|.++.+
T Consensus 275 ~thP~s~~vwvd~~~~~~~~-------------------------------------------------~v~viD~~tl~ 305 (369)
T PF02239_consen 275 KTHPDSRYVWVDTFLNPDAD-------------------------------------------------TVQVIDKKTLK 305 (369)
T ss_dssp E--TT-SEEEEE-TT-SSHT--------------------------------------------------EEEEECCGTE
T ss_pred ecCCCCccEEeeccCCCCCc-------------------------------------------------eEEEEECcCcc
Confidence 778888777765 2223 44455555555
Q ss_pred eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC--CeEEEEEcCCceeeeecC
Q 001318 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d--g~v~vwd~~~~~~~~~~~ 1021 (1101)
.+..+.... ...+..+.|++||+.+..+..+ +.|.|||..|.+++.++.
T Consensus 306 ~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 306 VVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred eeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 544443211 2348999999999986655443 369999999999999887
|
... |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-12 Score=141.92 Aligned_cols=197 Identities=14% Similarity=0.203 Sum_probs=153.2
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCC-----CeEEEEEecCCC
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS 420 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 420 (1101)
+.|....+.-+.+. ++.++.++.+.|||...+..... ..+.. ...-+-++++.-
T Consensus 88 ~wi~g~~l~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 88 DWIFGAKLFEENKK-IALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEEL 146 (967)
T ss_pred ccccccchhhhcce-EEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEE
Confidence 34444556666664 88888899999999987765432 11111 223345677888
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE-EecCcccCe
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPV 499 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v 499 (1101)
++++|+.-+.|.+|+..... . ...+.||.+.|.++.|+.||+ ++++.|+|.++++|++++++... +.-+|...|
T Consensus 147 ~i~~gsv~~~iivW~~~~dn-~--p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDN-K--PIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred EEEeccccccEEEEeccccC-C--cceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCccccccccee
Confidence 99999999999999988322 1 114889999999999999999 89999999999999999998876 667899999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
+.++|.+. .+++++.|.+.++|+.+.... ..+.+|....++.+++.++....+++
T Consensus 222 w~~~~~~n----~i~t~gedctcrvW~~~~~~l---------------------~~y~~h~g~~iw~~~~~~~~~~~vT~ 276 (967)
T KOG0974|consen 222 WACCFLPN----RIITVGEDCTCRVWGVNGTQL---------------------EVYDEHSGKGIWKIAVPIGVIIKVTG 276 (967)
T ss_pred EEEEeccc----eeEEeccceEEEEEeccccee---------------------hhhhhhhhcceeEEEEcCCceEEEee
Confidence 99998643 899999999999996553221 24555666677888888888899999
Q ss_pred eCCCcEEEEECCCC
Q 001318 580 GDDFSIKFWDMDSV 593 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~ 593 (1101)
+.|+.+++|++...
T Consensus 277 g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 277 GNDSTLKLWDLNGR 290 (967)
T ss_pred ccCcchhhhhhhcc
Confidence 99999999998653
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-13 Score=133.73 Aligned_cols=242 Identities=14% Similarity=0.190 Sum_probs=169.4
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCC--CeEEEEEecCCCcEEEE-Eecc------CeEEEEEe
Q 001318 806 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAI-GMDD------SSIQIYNV 876 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~las-g~~d------g~v~vwd~ 876 (1101)
....+++|..|..-+++|.|...++|+.+-.+.....+.+.+ .+..+-|- .++||. |+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999999999999876443222222222 23333332 234443 4333 48999996
Q ss_pred ecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 877 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 877 ~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
...+++.++. ...+|.+|.+++| .||+.- ++.|.||.....-+ ....+.+...+. .+.+++=+.+..+||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k-~l~~~et~~NPk----GlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK-LLHVIETRSNPK----GLCSLCPTSNKSLLAF 153 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh-heeeeecccCCC----ceEeecCCCCceEEEc
Confidence 6677777776 6788999999866 455544 56799999875322 122222222221 2223322333445555
Q ss_pred -E-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe-EEEEEcCCceeeeecCCCcccCCCCCCC
Q 001318 957 -V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSS 1033 (1101)
Q Consensus 957 -~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1101)
+ .-|+|+|-|+...+.-......+|...|.|++++-+|.++||+|..|+ |||||..+|+.++.++ .|....
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A 227 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRA 227 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchh
Confidence 5 568999999987665322333489999999999999999999999998 9999999999999887 333344
Q ss_pred CccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1034 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1034 ~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
.++ +++|+| +..+|++.|+.|+|+|+.+...+
T Consensus 228 ~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 477 999999 78999999999999999997755
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-15 Score=152.85 Aligned_cols=238 Identities=11% Similarity=0.160 Sum_probs=172.6
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec--C
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 418 (1101)
+.+|++-|+|++|+.||. +|++||.|-.+.|||....+.++. +-.||...|.++.|-| +
T Consensus 46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred hccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCC
Confidence 567999999999999999 599999999999999998777764 5789999999999999 6
Q ss_pred CCeEEEEEcCCeEEEEEccCCc-------eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce---
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--- 488 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~-------~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--- 488 (1101)
.+.+++|..|..|+++|+...+ ...+...+..|...|.-++-.|++.+ .+.+++.||+|+-+|++....
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence 7889999999999999998522 12233446679999999999999966 799999999999999986321
Q ss_pred ----EE---EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceee-----ecCCCCceeEEE-EccCCceE
Q 001318 489 ----QY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-----YEAPGRWCTTMA-YSADGTRT 555 (1101)
Q Consensus 489 ----~~---~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-----~~~~~~~v~~~~-~s~~~~~~ 555 (1101)
.. .+....-...++.+++... .+|+.|+.|-..++||.+...+... ...+.....++. |+|.+-..
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 11 1112223355677766544 7999999999999999643222111 111122222332 34444322
Q ss_pred EeccccC---ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 001318 556 YQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 599 (1101)
Q Consensus 556 ~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 599 (1101)
..+.... ..+.++|+|+|..|++.-..-.|+++|+..++....+
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 3332222 3556889999988888766678999999887765544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-11 Score=121.56 Aligned_cols=145 Identities=11% Similarity=0.053 Sum_probs=107.5
Q ss_pred cccceEEEEEcCCCceEEeeecCc-eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 737 RATKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
+...|.-..+..+++.++.+..|| .+-|++. .++.+.... +.-+.|.++.+++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~----------------------~~~e~kr~e----~~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK----------------------DGGEVKRIE----KDLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEec----------------------CCceEEEee----CCccceEEEEEcC
Confidence 344566666666666788888887 7777765 333322221 1456799999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC----eEEEEEeecceEeeeecCccc
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
||++++++. ...|.+.|+.+++....-+...+-|+..+|+| +++++|.+--+| .|++||+..++....-. ..+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 999999998 47899999999887665566677899999999 999999987766 78999999887654432 223
Q ss_pred CeeEEEEcCCCCEEEEEeC
Q 001318 891 RITGLAFSHALNVLVSSGA 909 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~ 909 (1101)
-=.+-+|.||+++|.--+.
T Consensus 490 ~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccCcccCCCCcEEEEEec
Confidence 3356789999999876653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-13 Score=144.41 Aligned_cols=323 Identities=14% Similarity=0.117 Sum_probs=191.6
Q ss_pred eEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeE
Q 001318 466 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 545 (1101)
Q Consensus 466 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 545 (1101)
.+++++-..++.|.|.|..+.+.+.++......-..+.+ ++||++++.++.||.|.++|+.+.+...++.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 346677888999999999999999999754433233444 6778899999999999999999987666554322 2344
Q ss_pred EEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCC-----CCCcCeEEEccCCCE
Q 001318 546 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCL 619 (1101)
Q Consensus 546 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~ 619 (1101)
+++++||+++++++ .++.+.++|.++.+.+..+...+. ...+..+..++....
T Consensus 83 ---------------------i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 83 ---------------------IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp ---------------------EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred ---------------------EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence 44555555677654 789999999999999988864321 224556777888775
Q ss_pred EEEEeC-CCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccc
Q 001318 620 LAVSTN-DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 698 (1101)
Q Consensus 620 l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1101)
+++.-. .+.|.+.|..+........
T Consensus 142 fVv~lkd~~~I~vVdy~d~~~~~~~~------------------------------------------------------ 167 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYSDPKNLKVTT------------------------------------------------------ 167 (369)
T ss_dssp EEEEETTTTEEEEEETTTSSCEEEEE------------------------------------------------------
T ss_pred EEEEEccCCeEEEEEeccccccceee------------------------------------------------------
Confidence 555544 4777666655431110000
Q ss_pred cCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeec-CceEEeeeccccccCCCCc
Q 001318 699 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGK 777 (1101)
Q Consensus 699 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~ 777 (1101)
.+ .........|+|++++++++.. ...+-++|......
T Consensus 168 -----------------i~-------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~----- 206 (369)
T PF02239_consen 168 -----------------IK-------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL----- 206 (369)
T ss_dssp -----------------EE---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-----
T ss_pred -----------------ec-------------------ccccccccccCcccceeeecccccceeEEEeeccceE-----
Confidence 00 1123346788899988766543 56777777643211
Q ss_pred eeeeecCccccCCCccccccccCCCCCCCCeeE---------EEEecCCCEEEEE-eCCeEEEEECCCCceeeEecCCCC
Q 001318 778 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC---------FALSKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPP 847 (1101)
Q Consensus 778 ~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~---------~~~s~dg~~la~~-sdg~i~vwd~~~~~~~~~~~~~~~ 847 (1101)
+..+..|... |...+.. -+....+...++. +.+.+.+||..+++.++++....+
T Consensus 207 --------v~~i~~g~~p--------~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~ 270 (369)
T PF02239_consen 207 --------VALIDTGKKP--------HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG 270 (369)
T ss_dssp --------EEEEE-SSSB--------EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS
T ss_pred --------EEEeeccccc--------cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC
Confidence 0111111110 1111111 1122333333222 345677899999999999987766
Q ss_pred CeEEEEEecCCCcEEEEE----eccCeEEEEEeecceEeeeecCcc-cCeeEEEEcCCCCEEEEEeCCC--ceEEEeCCC
Q 001318 848 AATFLAFHPQDNNIIAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS--QLCVWSSDG 920 (1101)
Q Consensus 848 ~i~~l~~sp~d~~~lasg----~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s~s~D~--~v~iwd~~~ 920 (1101)
. ..+..+| +++++.+. ...++|.|+|.++.+.+.++.... ..+..+.|++||+++..+..++ .|.|||..+
T Consensus 271 g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 271 G-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp S---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred c-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 6 8888899 89999887 456899999999998887775333 3589999999999876655443 699999999
Q ss_pred ccccc
Q 001318 921 WEKQK 925 (1101)
Q Consensus 921 ~~~~~ 925 (1101)
.+...
T Consensus 349 l~~~~ 353 (369)
T PF02239_consen 349 LKEKK 353 (369)
T ss_dssp TEEEE
T ss_pred cEEEE
Confidence 66433
|
... |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=156.96 Aligned_cols=222 Identities=13% Similarity=0.129 Sum_probs=145.7
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecC--CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
..+..|...+.+.+|||||++|+.++..+ ..|++||+.+++..... .+.+| ..+++||
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wS 256 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFS 256 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeEC
Confidence 34456788899999999999854443322 36999999887643210 12333 3468999
Q ss_pred cCCCeEEEEE-cCCeEEEE--EccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ceEEEe
Q 001318 417 PDGSLFGVAY-SRHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIF 492 (1101)
Q Consensus 417 pdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~ 492 (1101)
|||++|+.++ .+|.+.|| |+.+++.. .+..+...+...+|+|||+. ++++...++...||++... .....+
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTPS----QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCeE----eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe
Confidence 9999998875 67766555 66665532 35567778899999999995 3444556788888876532 223333
Q ss_pred cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 493 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
.+.. ....| +++|++|+..+.++ +.+||+.++......... .. ....|+|+
T Consensus 332 -~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~---------------------~~~~~sPd 382 (429)
T PRK01742 332 -GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LD---------------------ESPSISPN 382 (429)
T ss_pred -cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CC---------------------CCceECCC
Confidence 3433 34555 56677888877765 555898775433211110 11 12457777
Q ss_pred CCEEEEEeCCCcEEEEEC--CCCceeEEEcCCCCCCCcCeEEEccC
Q 001318 573 KNRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKD 616 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~ 616 (1101)
|++++.++.++.+.+|.+ .+|+.+..+..+.. .+...+|+|-
T Consensus 383 G~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 383 GIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 788999988998888875 35777777765433 5778899884
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-13 Score=153.57 Aligned_cols=225 Identities=14% Similarity=0.134 Sum_probs=149.8
Q ss_pred CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcC---CeEEEEEccCCceee
Q 001318 367 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR 443 (1101)
Q Consensus 367 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~ 443 (1101)
+..|.|||....... .+..|...|.+.+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998755422 256788899999999999999988654 479999999876432
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEE-ecCCCcEEEE--eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEe-cC
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LD 519 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s-~~~d~~i~iw--d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d 519 (1101)
...+.+| ...++|+|||+. |+. .+.++.+.|| |+.++. +..+..+...+....|+ +||+.|+.++ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS--PDGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC--CCCCEEEEEECCC
Confidence 2234444 446899999995 444 4567765555 665655 45566676677778875 5566666554 57
Q ss_pred CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 001318 520 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 599 (1101)
Q Consensus 520 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 599 (1101)
|...+|+++..........+.. ....|+|+|+.++.++.++ +.+||+.+++.....
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~-----------------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG-----------------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS 369 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC-----------------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec
Confidence 8889998764322111111110 1245677777887777654 666999888765333
Q ss_pred cCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec--Cccccccccccccc
Q 001318 600 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAY 649 (1101)
Q Consensus 600 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~ 649 (1101)
... ...++.|+|||++|+.++.++...+|.+. ++ ...+.+..+..
T Consensus 370 ~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g 416 (429)
T PRK01742 370 STF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDG 416 (429)
T ss_pred CCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCC
Confidence 221 23568899999999999999999888764 34 45555554443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-12 Score=129.11 Aligned_cols=291 Identities=12% Similarity=0.149 Sum_probs=185.4
Q ss_pred ccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceee
Q 001318 701 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA 780 (1101)
Q Consensus 701 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 780 (1101)
-..++++..|..|++|+-.. +.+..++ ......|++++|-|.+...++.+-.+.|.+|..+.......
T Consensus 110 ~~~fava~nddvVriy~kss-t~pt~Lk------s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r----- 177 (445)
T KOG2139|consen 110 IIAFAVATNDDVVRIYDKSS-TCPTKLK------SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR----- 177 (445)
T ss_pred hhhhhhhccCcEEEEeccCC-CCCceec------chhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-----
Confidence 34567888999999999776 3332222 22567899999999877777777777899998753211000
Q ss_pred eecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCC
Q 001318 781 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD 858 (1101)
Q Consensus 781 ~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d 858 (1101)
.++. . +......+.+.+| ..|+++.|.+||..+++++ +..|.|||..++..+.-..-..+.++-+.||| |
T Consensus 178 --~~~~--~--s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-d 249 (445)
T KOG2139|consen 178 --NIRM--M--STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-D 249 (445)
T ss_pred --cccc--c--cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-C
Confidence 0000 0 0011111223334 7899999999999999998 67899999999887766545567899999999 8
Q ss_pred CcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc----------cee
Q 001318 859 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK----------NRF 928 (1101)
Q Consensus 859 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~----------~~~ 928 (1101)
+.+|..++-|+..++|......-.....--++.|...+|+|+|++|..+.. +.-++|.+.-..+.. ..+
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred CCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeee
Confidence 999999999999999965433222333334568999999999988765443 223445433211100 000
Q ss_pred ------eecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC---------eEEEEEcCCceeeeeccCC-CCCCCeeEEEEcC
Q 001318 929 ------LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET---------QLAIFETTKLECVKQWVPR-ESSAPITHATFSC 992 (1101)
Q Consensus 929 ------~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~---------~v~vwd~~~~~~~~~~~~~-~h~~~i~~l~~sp 992 (1101)
..+..+...-.+++.+++|.|.|.+||+...+ .|.+||....-.+...... -.......++|+|
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~p 408 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGP 408 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeee
Confidence 01111211122577999999999999995332 3556776554333222110 0022355667766
Q ss_pred ---CCCEEEEEEcCCeEEEEEcC
Q 001318 993 ---DSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 993 ---dg~~l~s~s~dg~v~vwd~~ 1012 (1101)
+|.+|..+=..|.+.-|++.
T Consensus 409 l~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 409 LKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccCCcEEEEEeccCceEeeeeE
Confidence 67777777777888777754
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=130.81 Aligned_cols=256 Identities=16% Similarity=0.179 Sum_probs=165.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 422 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 422 (1101)
-+..+..++|++.=- -+|++..|..|+|||-....... +-......|+|++|-| .++-|
T Consensus 97 s~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasel 156 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASEL 156 (445)
T ss_pred hhcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCccee
Confidence 345678899999544 37899999999999976522211 1122345899999999 55667
Q ss_pred EEEEcCCeEEEEEccCCcee-----------eeeeeeccccCCeeEEEEcCCCCeEEEEEec-CCCcEEEEeCCCCceEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEV-----------RQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQY 490 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~-----------~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~ 490 (1101)
++|+..| |.||..+.--.. .+...-.|| .+|++|.|.+||. .+++++ .|..|.|||..+|..+.
T Consensus 157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIP 232 (445)
T ss_pred eeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccc
Confidence 7777766 999976531111 111223455 6899999999999 677777 56789999999998876
Q ss_pred EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccc-cCceeEEEE
Q 001318 491 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR-KRSLGVVQF 569 (1101)
Q Consensus 491 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~-~~~~~~~~~ 569 (1101)
-..-..+.+.-+.|+ +|+++|+++.-|+..++|...............+.|...+|+|+|+.++.... ...+..+.|
T Consensus 233 L~~~glgg~slLkwS--Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 233 LIPKGLGGFSLLKWS--PDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred ccccCCCceeeEEEc--CCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 553345667778885 56689999999999999965544333333444558999999999986554433 334455555
Q ss_pred cCCCCEEE-EEeCCCcEEEEECCCCceeEEEcC-CCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001318 570 DTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNG 628 (1101)
Q Consensus 570 ~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~ 628 (1101)
......+. .++.....-+-|+..-. ...+ .--.+...+++|.|.|.+|++....+.
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~t---i~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVT---ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhh---hhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 44333222 22322333333332111 1111 001235788999999999998765443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=143.65 Aligned_cols=281 Identities=12% Similarity=0.153 Sum_probs=212.1
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..-..+.++.+|+.++.++..|.+..+|+.+ +.+.... .-...|..+.|-.+.+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t----------------------~~L~~Ei----~v~Etv~Dv~~LHneq 183 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT----------------------KKLHFEI----NVMETVRDVTFLHNEQ 183 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc----------------------ceeeeee----ehhhhhhhhhhhcchH
Confidence 4557889999999999999999999988743 2222211 1356688899999999
Q ss_pred EEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEc
Q 001318 819 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 898 (1101)
++|++....++|||- .|..++.++.| ..|..+.|-| .--+|++++..|.++--|+.+|+++..+..-.+.+..++-+
T Consensus 184 ~~AVAQK~y~yvYD~-~GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 184 FFAVAQKKYVYVYDN-NGTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred HHHhhhhceEEEecC-CCcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 999999999999995 46777777644 4599999999 78899999999999999999999999998888999999999
Q ss_pred CCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeecc
Q 001318 899 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV 977 (1101)
Q Consensus 899 ~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~ 977 (1101)
|-+-.+-+|...|+|.+|.....+. +...-.|. ++|.++++.++|.|+|+ |.|..++|||+.+...+.++.
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skeP-----LvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEP-----LVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcch-----HHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence 9999999999999999999877443 22222333 48999999999999999 799999999999988776655
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEE-cCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC
Q 001318 978 PRESSAPITHATFSCDSQLVYACFLDATVCVFS-AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1056 (1101)
Q Consensus 978 ~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d 1056 (1101)
. ..+...++||..| |++.+....|.||. ...+...+... |+.+. ..+.|. .+.|.|- .+.|-.|..-
T Consensus 333 t---p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~p---Ym~H~-~~~~V~--~l~FcP~-EDvLGIGH~~ 400 (545)
T KOG1272|consen 333 T---PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETP---YMNHR-CGGPVE--DLRFCPY-EDVLGIGHAG 400 (545)
T ss_pred c---CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcc---hhhhc-cCcccc--cceeccH-HHeeeccccC
Confidence 3 3467788888655 34445566899994 33333222222 22222 122355 8899984 4677777766
Q ss_pred CcEEEEeccCCC
Q 001318 1057 GGVHVFEPLESE 1068 (1101)
Q Consensus 1057 g~v~vW~~~~~~ 1068 (1101)
|--.+.-.-.|+
T Consensus 401 G~tsilVPGsGe 412 (545)
T KOG1272|consen 401 GITSILVPGSGE 412 (545)
T ss_pred CceeEeccCCCC
Confidence 655555555555
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=137.44 Aligned_cols=257 Identities=14% Similarity=0.153 Sum_probs=175.9
Q ss_pred eeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCC--CCCeEEEEE
Q 001318 338 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP--GVSVNRVIW 415 (1101)
Q Consensus 338 ~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~ 415 (1101)
+++-+++...-+.+..||||+|++|||...-.|++||+..-.... .-| ...|.-.-.
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~feiL 102 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEIL 102 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEEe
Confidence 445667889999999999999999999999999999997654432 222 234555555
Q ss_pred ecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 416 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
|-|-..++.-..|.+|.+-..-. .-.. ..+ ...-..++++.-.-. |..++....|+-.+++.|..+..|...
T Consensus 103 sDD~SK~v~L~~DR~IefHak~G-~hy~--~RI---P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKYG-RHYR--TRI---PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred ccchhhheEeecCceeeehhhcC-eeee--eec---CcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccc
Confidence 66666666667777776543221 1110 001 112234455444433 344444567999999999999999888
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
.+.++++.+++- ..+|++|+.+|.|-+||.+.......+..... |.+... +.....++.+.|+.+|-.
T Consensus 175 ~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~pg---------~~~~~svTal~F~d~gL~ 242 (703)
T KOG2321|consen 175 SGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSHPG---------GDAAPSVTALKFRDDGLH 242 (703)
T ss_pred cccceeeeecCc--cceEEecccCceEEEecchhhhhheeeecccc-cCCCcc---------ccccCcceEEEecCCcee
Confidence 889999887543 35888888999999999998666554443222 111111 111225667777777778
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccC--CCEEEEEeCCCcEEEEEecCc
Q 001318 576 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 576 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+++|..+|.+.|||+++.+++..-. |....+|..+.|.+. ++.+++. +...++|||-.+|
T Consensus 243 ~aVGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 243 VAVGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG 304 (703)
T ss_pred EEeeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence 9999999999999999998877655 455567888999774 4455544 4578999998887
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=142.31 Aligned_cols=156 Identities=19% Similarity=0.274 Sum_probs=117.0
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEe---------eeeeeeecCCCCcccccccccCCCCCeEEEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---------RNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 415 (1101)
+..|+|+.|-|-+..+++++-.+|.++++|.+-...... ..|.+-.........+..-..--.+.|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 478999999998888888888999999997632110000 00111000000000111112222458999999
Q ss_pred ecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 416 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
||||++||+.+.||.++|+|..+.+.+. .++.--+...|++|||||+ +|++|++|-.|.||.+..++.+..-+||
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecccc
Confidence 9999999999999999999999977655 2334457899999999999 8999999999999999999999999999
Q ss_pred ccCeEEEeee
Q 001318 496 EAPVYSVCPH 505 (1101)
Q Consensus 496 ~~~v~~v~~~ 505 (1101)
...|..|+|.
T Consensus 374 kSWVs~VaFD 383 (636)
T KOG2394|consen 374 KSWVSVVAFD 383 (636)
T ss_pred ccceeeEeec
Confidence 9999999986
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.7e-14 Score=144.00 Aligned_cols=195 Identities=12% Similarity=0.225 Sum_probs=152.4
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
....|..+.|-|.--+|++++ .|.++--|+.+|+.+..+....+.+..++-+| -+..+-+|...|+|.+|.-.+.+.+
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchH
Confidence 356688899999888888888 69999999999999999998889999999999 7889999999999999999999999
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeE
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL 962 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v 962 (1101)
..+-.|.++|.+|++.++|+++||+|.|..++|||+..... +.....- .....++||.-|- ||.+....|
T Consensus 287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q----l~t~~tp-----~~a~~ls~Sqkgl-LA~~~G~~v 356 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ----LHTYRTP-----HPASNLSLSQKGL-LALSYGDHV 356 (545)
T ss_pred HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc----cceeecC-----CCccccccccccc-eeeecCCee
Confidence 99999999999999999999999999999999999988442 1111111 2457788888774 566777789
Q ss_pred EEEE-cCCc--eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEE
Q 001318 963 AIFE-TTKL--ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF 1009 (1101)
Q Consensus 963 ~vwd-~~~~--~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vw 1009 (1101)
.||. .-.+ .+-.-+..+.-.+.|..+.|.|-...|-.|..-|.-.+.
T Consensus 357 ~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 357 QIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred eeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 9994 3221 111111111225689999999977777766655544443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-11 Score=128.34 Aligned_cols=480 Identities=12% Similarity=0.125 Sum_probs=276.7
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCce------------eeeeeeeccccCCeeEEEEcCCCCeEEEEEec
Q 001318 406 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE------------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 473 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~ 473 (1101)
......|++|+....|+|+|+.||.++|-.+.+... +.-..++.||...|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 455789999999999999999999999998765321 111245789999999999998887 688999
Q ss_pred CCCcEEEEeCCCCceEEEe--cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccC
Q 001318 474 DDKTIKVWDATNGAKQYIF--EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 551 (1101)
Q Consensus 474 ~d~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 551 (1101)
.+|.|.||-+-.|.-...+ ......|.+++| ..+|..+.....||.|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGav----------------------------- 139 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAV----------------------------- 139 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCE-----------------------------
Confidence 9999999998887654332 224455777777 4555667666666655
Q ss_pred CceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001318 552 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 631 (1101)
++|+-||. +||.-+-.- . ....+.|++|.+.++.+-.+|.+.+
T Consensus 140 -------------------------IVGsvdGN-RIwgKeLkg-------~----~l~hv~ws~D~~~~Lf~~ange~hl 182 (1189)
T KOG2041|consen 140 -------------------------IVGSVDGN-RIWGKELKG-------Q----LLAHVLWSEDLEQALFKKANGETHL 182 (1189)
T ss_pred -------------------------EEEeeccc-eecchhcch-------h----eccceeecccHHHHHhhhcCCcEEE
Confidence 33444443 556432110 0 1234778888877777777788888
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCC-ccccccCccceeeccCC
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG-DVRSLADVKPRITEESN 710 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d 710 (1101)
+|............. .-.+.. .|+..+ .+ +....-+.+ .....|+...++++...
T Consensus 183 ydnqgnF~~Kl~~~c-~Vn~tg-------~~s~~~-------------~k---ia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 183 YDNQGNFERKLEKDC-EVNGTG-------IFSNFP-------------TK---IAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ecccccHHHhhhhce-EEeeee-------eecCCC-------------cc---ccceeeccCccccCCCCCCEEEEEEcC
Confidence 876544221110000 000000 000000 00 011111122 23345688889999999
Q ss_pred CcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCC
Q 001318 711 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 790 (1101)
Q Consensus 711 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~ 790 (1101)
|.+.+..-.+...+.... ....|..+.|+++|..|++++.+...-- ...+..++++.+-
T Consensus 239 Gr~QiMR~eND~~Pvv~d--------tgm~~vgakWnh~G~vLAvcG~~~da~~-------------~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVD--------TGMKIVGAKWNHNGAVLAVCGNDSDADE-------------PTDSNKVHFYSPY 297 (1189)
T ss_pred ceehhhhhcCCCCCeEEe--------cccEeecceecCCCcEEEEccCcccccC-------------ccccceEEEeccc
Confidence 998887766544433322 2367889999999999999887632100 0000011122211
Q ss_pred CccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCe
Q 001318 791 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS 870 (1101)
Q Consensus 791 ~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~ 870 (1101)
|..+.. ++. ....|++++|-..|-.+|.+-|+.|++=+++..-.-..+. . .+.|--..... -.-.
T Consensus 298 -G~i~gt-lkv--pg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e---~---TvVy~y~~~e~-----p~y~ 362 (1189)
T KOG2041|consen 298 -GHIVGT-LKV--PGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIE---E---TVVYVYQKEEL-----PQYG 362 (1189)
T ss_pred -hhheEE-Eec--CCceeeeeEEcCCceEEEEEecceEEEEeecccceEEEee---e---EEEEEEccCCC-----cceE
Confidence 111111 111 4678999999999999999999999988876422111111 1 11111100000 1224
Q ss_pred EEEEEeecceE-eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc-ceeeecCCCCCCCC--CCCeEEE
Q 001318 871 IQIYNVRVDEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTA--QSDTRVQ 946 (1101)
Q Consensus 871 v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~--~~v~~~~ 946 (1101)
|.+||..+.+. ++... | ..+++|+.+.-.|++-..|+.+.-++.-...... ...+...-|..... ..|.-..
T Consensus 363 i~Fwdtk~nek~vK~V~-~---~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~F 438 (1189)
T KOG2041|consen 363 IMFWDTKTNEKTVKTVT-H---FENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKF 438 (1189)
T ss_pred EEEEecccChhhhhhhc-c---eeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeE
Confidence 78899887643 23222 2 4567888777778887788877666321111000 00011111111000 1122222
Q ss_pred EcCCCcEEEEEeCCeEEEEEcCCceeeee-------------------------cc-----CCCCCCCeeEEEEcCCCCE
Q 001318 947 FHQDQIHFLVVHETQLAIFETTKLECVKQ-------------------------WV-----PRESSAPITHATFSCDSQL 996 (1101)
Q Consensus 947 ~s~dg~~la~~~d~~v~vwd~~~~~~~~~-------------------------~~-----~~~h~~~i~~l~~spdg~~ 996 (1101)
..-+|.++++++...+.+|.....+.... +. ..|..++|-+++.| .++
T Consensus 439 v~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~ 516 (1189)
T KOG2041|consen 439 VCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKF 516 (1189)
T ss_pred EEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceE
Confidence 33466777777777888887533221100 00 11335677777775 678
Q ss_pred EEEEEcCCeEEEEEcCCceeeeecC
Q 001318 997 VYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 997 l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
|+.+-..|.|.-|.+.++-+..+..
T Consensus 517 l~vareSG~I~rySl~nv~l~n~y~ 541 (1189)
T KOG2041|consen 517 LMVARESGGIYRYSLNNVVLTNSYP 541 (1189)
T ss_pred EEEEeccCceEEEEecceeeeeccc
Confidence 8889999999999999988776544
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=137.78 Aligned_cols=216 Identities=14% Similarity=0.192 Sum_probs=149.7
Q ss_pred cCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCc-eEEeeecCceEEeeeccccc--cCCC
Q 001318 699 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTE--RNSS 775 (1101)
Q Consensus 699 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~--~~~~ 775 (1101)
+++-.++.+-..|.+.+.+....... + .+..........++++.|-|.+. .++++-.+|.+++||..... ..+.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~s-k--lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVS-K--LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS 259 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHH-H--hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence 45556667777777777765541111 1 11111122457899999988655 45566678999999763221 1111
Q ss_pred Cceeeee---cCccccCCCc-cccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeE
Q 001318 776 GKATASV---APQLWQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT 850 (1101)
Q Consensus 776 ~~~~~~~---~~~lw~~~~g-~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~ 850 (1101)
...+... .+..|--... ..+.. .. .-...|...+|+|||++||+.+ ||.+||||..+.+++..++.--+...
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~-w~--~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL 336 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVAR-WH--IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL 336 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccce-eE--eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE
Confidence 1111110 1111111111 01110 00 1345788999999999999999 99999999999888888777778899
Q ss_pred EEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcC-------------------------------
Q 001318 851 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------------------------------- 899 (1101)
Q Consensus 851 ~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~------------------------------- 899 (1101)
|++||| ||+||++|++|--|.||.+..+++++.-++|.+.|..|+|.|
T Consensus 337 CvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~ 415 (636)
T KOG2394|consen 337 CVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANG 415 (636)
T ss_pred EEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCC
Confidence 999999 999999999999999999999999999999999999999972
Q ss_pred C----C-------------CEEEEEeCCCceEEEeCCCc
Q 001318 900 A----L-------------NVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 900 d----g-------------~~l~s~s~D~~v~iwd~~~~ 921 (1101)
+ + -.+.++|.|-.+++||+...
T Consensus 416 ~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 416 TGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred CCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 0 1 25778899999999999764
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-10 Score=125.22 Aligned_cols=210 Identities=16% Similarity=0.198 Sum_probs=134.2
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEECCC-CceeeE---e----------cCCCCCeEEEEEecCCCcEEEEEe-ccC
Q 001318 807 AVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAATFLAFHPQDNNIIAIGM-DDS 869 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~-~~~~~~---~----------~~~~~~i~~l~~sp~d~~~lasg~-~dg 869 (1101)
....++++|++++|+++. +|.|.++++.. +..... + .......-++.|+| +++++++.+ ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345677777888777776 67788888765 332221 1 11234578899999 888777764 345
Q ss_pred eEEEEEeecce--Ee--eeec-CcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCC--CcccccceeeecCCCCCCCCCC
Q 001318 870 SIQIYNVRVDE--VK--SKLK-GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQS 941 (1101)
Q Consensus 870 ~v~vwd~~~~~--~~--~~l~-~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 941 (1101)
.|++|++.... +. ..+. .....-..++|+||++++.... .+++|.++++. ++.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 32 2222 2234467899999999886655 57789999988 4433333333333222211125
Q ss_pred CeEEEEcCCCcEEEEE--eCCeEEEEEcC--Cce--eeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEc--C
Q 001318 942 DTRVQFHQDQIHFLVV--HETQLAIFETT--KLE--CVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSA--A 1012 (1101)
Q Consensus 942 v~~~~~s~dg~~la~~--~d~~v~vwd~~--~~~--~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~--~ 1012 (1101)
...++++|||++|.++ ..+.|.+|++. +++ .+..+.. .....+.++++|||++|+++. .++.|.+|++ +
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 6889999999999985 56789999993 233 3333332 134589999999999998887 5668999876 5
Q ss_pred Cceeeee
Q 001318 1013 NLKLRCR 1019 (1101)
Q Consensus 1013 ~~~~~~~ 1019 (1101)
+|.+...
T Consensus 325 tG~l~~~ 331 (345)
T PF10282_consen 325 TGKLTPV 331 (345)
T ss_dssp TTEEEEE
T ss_pred CCcEEEe
Confidence 7776543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-11 Score=129.07 Aligned_cols=547 Identities=11% Similarity=0.101 Sum_probs=305.5
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
......|++|+....| +|+|+.||.++|-.+.+...-.. .-.+...+.-.....+.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEecccccccc
Confidence 4567889999999886 99999999999999876533211 001111112222346899999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE-EEecCcccCeEEE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSV 502 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~v 502 (1101)
+...+|.|.||-+-.|.-...+ .-....+.|.+++|..||. .+.....||.|.|=.++..+.- +.+++. ....+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv 162 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV 162 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence 9999999999998887654322 1223556899999999999 5777777888766554432211 223321 12245
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCc-eeE-EEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTT-MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
.|+ +|...++.+-..|.+.++|....-.. ..+... |+. -.++.-+.+ +.++....-...-..|+...++++.
T Consensus 163 ~ws--~D~~~~Lf~~ange~hlydnqgnF~~---Kl~~~c~Vn~tg~~s~~~~k-ia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 163 LWS--EDLEQALFKKANGETHLYDNQGNFER---KLEKDCEVNGTGIFSNFPTK-IAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eec--ccHHHHHhhhcCCcEEEecccccHHH---hhhhceEEeeeeeecCCCcc-ccceeeccCccccCCCCCCEEEEEE
Confidence 664 44467777777899999987542111 111111 111 112222221 1111111111223456778899999
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCC
Q 001318 581 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 660 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1101)
..|.+.+-.-.+......+... ..+..+.|+++|..|++++.+..-.- +..+. .+.
T Consensus 237 ~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d~n--~v~------------------ 292 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTDSN--KVH------------------ 292 (1189)
T ss_pred cCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-ccccc--eEE------------------
Confidence 9999888765544333333211 35778999999999999876532100 00000 000
Q ss_pred cccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccc
Q 001318 661 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 740 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1101)
-+++.+ ....++.. ....
T Consensus 293 Fysp~G----------------------------------------------------------~i~gtlkv----pg~~ 310 (1189)
T KOG2041|consen 293 FYSPYG----------------------------------------------------------HIVGTLKV----PGSC 310 (1189)
T ss_pred Eeccch----------------------------------------------------------hheEEEec----CCce
Confidence 000000 00001111 2345
Q ss_pred eEEEEEcCCCceEEeeecCceEEeeecccc----------ccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeE
Q 001318 741 ISRLIFTNSGNAILALASNAIHLLWKWQRT----------ERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 810 (1101)
Q Consensus 741 i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~ 810 (1101)
|++++|-..|-.++.+ -|+.|.+=+++.. .+-..+.......+.+||..+...... .-....+
T Consensus 311 It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK------~V~~~~~ 383 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK------TVTHFEN 383 (1189)
T ss_pred eeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh------hhcceee
Confidence 5666665555433322 2334444333211 000111222222455777766553322 1223456
Q ss_pred EEEecCCCEEEEEe-CCeEEEEEC-CCCceeeEec-----C--CCCCeEEE--EEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 811 FALSKNDSYVMSAS-GGKISLFNM-MTFKTMATFM-----P--PPPAATFL--AFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 811 ~~~s~dg~~la~~s-dg~i~vwd~-~~~~~~~~~~-----~--~~~~i~~l--~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
+++..+--.|+.-. +|.|.-++. ++...+..+. | -+...+.+ .|-.-++.+++.++.+ .+.+|.....
T Consensus 384 ~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~p 462 (1189)
T KOG2041|consen 384 MAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLP 462 (1189)
T ss_pred hheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEecc
Confidence 66665544455444 565554422 2222111110 0 01111111 1222156677777765 6788876321
Q ss_pred e--------------------------------EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccce
Q 001318 880 E--------------------------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR 927 (1101)
Q Consensus 880 ~--------------------------------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~ 927 (1101)
+ ...++.|..++|.+++.| .++|..+-..|.|.-+.+...-....
T Consensus 463 K~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~- 539 (1189)
T KOG2041|consen 463 KFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNS- 539 (1189)
T ss_pred chhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeec-
Confidence 1 013345566788888886 57888888999999999887432111
Q ss_pred eeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcC---CceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC
Q 001318 928 FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1003 (1101)
Q Consensus 928 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~---~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d 1003 (1101)
. +....+.++.+.-+...+|+ -.-|.+.+.|+. ++.++..+.. .....|+.+.|..|+..|++-.+-
T Consensus 540 ----y----~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~-~errDVWd~~Wa~dNp~llAlmeK 610 (1189)
T KOG2041|consen 540 ----Y----PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT-SERRDVWDYEWAQDNPNLLALMEK 610 (1189)
T ss_pred ----c----ccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh-hhhhhhhhhhhccCCchHHhhhhh
Confidence 1 11236788999999888888 466788888775 3444443321 226689999999888877766555
Q ss_pred CeEEEEEcC
Q 001318 1004 ATVCVFSAA 1012 (1101)
Q Consensus 1004 g~v~vwd~~ 1012 (1101)
..++|++-.
T Consensus 611 trmyifrgn 619 (1189)
T KOG2041|consen 611 TRMYIFRGN 619 (1189)
T ss_pred ceEEEecCc
Confidence 567777643
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-08 Score=121.20 Aligned_cols=537 Identities=12% Similarity=0.143 Sum_probs=289.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEE----eCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
..+.|.++.|-++... ++.+..+|.|.+. +..+.+... ...-...|.|++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 4578999999999985 7778888999999 655554432 23346699999999999
Q ss_pred CeEEEEEcCCeEEEEEcc----C-------------------Cceeeee----------------------eeeccccCC
Q 001318 420 SLFGVAYSRHIVQIYSYH----G-------------------GDEVRQH----------------------LEIDAHVGG 454 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~----~-------------------~~~~~~~----------------------~~l~~h~~~ 454 (1101)
..||....++++.+.+-. . |+.-.++ ..+. +.+.
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 999999999998876421 0 0000000 0111 3335
Q ss_pred eeEEEEcCCCCeEEEEEecC------CCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEec---CCcEEEE
Q 001318 455 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW 525 (1101)
Q Consensus 455 V~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~---dg~i~~w 525 (1101)
-..|+|-.||. ++++.+. -..++||+ +.|....+-+.-.+--.+++| .|.|++|++.-. ...|.+|
T Consensus 212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~W--rPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSW--RPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccC--CCCCCEEEEEEEcCCCcEEEEE
Confidence 56789999999 6666553 25799999 668766655544444455677 455678877754 3456666
Q ss_pred ecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEcCCC
Q 001318 526 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADG 603 (1101)
Q Consensus 526 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~ 603 (1101)
.-+.. ....|... +.++ ...+..+.|++++..|+..-.|. |.+|-..+... .+.+....
T Consensus 287 ErNGL-rhgeF~l~--------~~~~---------~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~ 347 (928)
T PF04762_consen 287 ERNGL-RHGEFTLR--------FDPE---------EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS 347 (928)
T ss_pred ecCCc-EeeeEecC--------CCCC---------CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence 43321 11111111 1111 12344555666666777766554 99999877653 22333222
Q ss_pred CCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 604 GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 604 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
. ..+..+.|+| +...|.+.+.+|.+..++..-... .+..
T Consensus 348 ~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~-----~s~~---------------------------------- 387 (928)
T PF04762_consen 348 S-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS-----RSPG---------------------------------- 387 (928)
T ss_pred C-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE-----ecCC----------------------------------
Confidence 2 2345599999 566788888878887765432100 0000
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceE
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 762 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 762 (1101)
..++..-.+..-+..++.+-.+.....+..+....+. -...|..++|++++..+++...||.+
T Consensus 388 --------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~---~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 388 --------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE---LPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred --------------CCccCceEEEEEeCCeEEEecccccCCCchHhceEEc---CCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 0001111111222234555555443333333222211 34689999999999989999999999
Q ss_pred EeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-C---CeEEEEECCCCc-
Q 001318 763 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK- 837 (1101)
Q Consensus 763 ~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~- 837 (1101)
.+|.+.............. .......... .........+..++|..+...++... + ..+.++++....
T Consensus 451 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (928)
T PF04762_consen 451 SIYEWDLKNMWSVKPPKLL-----SSISLDSMDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN 523 (928)
T ss_pred EEEEecCCCcccccCcchh-----hhcccccccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence 9998654322110000000 0000000000 00001345678889988887777765 3 468888874332
Q ss_pred --eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE-eeeecCcccCeeEEEEcCCCC---EEEEEeCCC
Q 001318 838 --TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLVSSGADS 911 (1101)
Q Consensus 838 --~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~---~l~s~s~D~ 911 (1101)
.......-.+.+..+...+ +...++.-..+|.+..++...... +..+..- ..-..+....+.. .++.-+..+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~-c~~~~~~~~~~~~~~~~~~GLs~~~ 601 (928)
T PF04762_consen 524 SASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQP-CPWMEVCQINGSEDKRVLFGLSSNG 601 (928)
T ss_pred ceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCC-CcEEEEEEECCccceeEEEEECCCC
Confidence 2233333344555555555 444566777899998766554321 1223221 1122233333322 444444444
Q ss_pred ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCC-ceeeeeccCCC----CCCCe
Q 001318 912 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK-LECVKQWVPRE----SSAPI 985 (1101)
Q Consensus 912 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~-~~~~~~~~~~~----h~~~i 985 (1101)
.+.+ .. . .+. ..+++.+++ +.+|+. .....++..++.. ........ .. +...+
T Consensus 602 ~Ly~---n~-~-----~la---------~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~ 660 (928)
T PF04762_consen 602 RLYA---NS-R-----LLA---------SNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERC 660 (928)
T ss_pred EEEE---CC-E-----EEe---------cCCceEEEE--cCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccc
Confidence 4432 11 0 111 245666663 444444 5667788888871 11111110 01 11122
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 986 THATFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 986 ~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
+.+ .-|..|+++-...+=.|.-+.-|.+
T Consensus 661 R~V---ERGsriVt~vp~~~~vVLQmPRGNL 688 (928)
T PF04762_consen 661 RRV---ERGSRIVTAVPSDTSVVLQMPRGNL 688 (928)
T ss_pred ccC---ccCCEEEEEeCCCceEEEEcCCCch
Confidence 332 3577777776554444556665554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=139.91 Aligned_cols=221 Identities=9% Similarity=0.015 Sum_probs=139.2
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEec--CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
.+..+...+.+.+|||||+.|+.+... +..|.+||+.+++... +....+.+..++|||
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SP 252 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSP 252 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECC
Confidence 344567789999999999985544322 3579999998876433 222233455789999
Q ss_pred CCCeEEEE-EcCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEec-CCCc--EEEEeCCCCceEEE
Q 001318 418 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAKQYI 491 (1101)
Q Consensus 418 dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d~~--i~iwd~~~~~~~~~ 491 (1101)
||++|+.. +.+| .|.+||+++++..+ +..+...+...+|+|||+. |+..+ .++. |+++|+.+++. ..
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-EE
Confidence 99999865 3344 58999999876433 4445567889999999995 44444 3444 55557666654 33
Q ss_pred ecCcccCeEEEeeeecCCccEEEEEecC---CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 492 FEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 492 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
+..+.......+| +++|++++..+.+ ..|.+||+.++... .+... ... ....
T Consensus 326 lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~---------------------~~p~ 380 (429)
T PRK03629 326 ITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLD---------------------ETPS 380 (429)
T ss_pred eecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCC---------------------CCce
Confidence 3333334445666 4666777766543 35778888765422 22111 011 1234
Q ss_pred EcCCCCEEEEEeCCCc---EEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 569 FDTTKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
|+|||+.++.++.++. ++++++ +|.....+..+. ..+...+|+|
T Consensus 381 ~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 381 IAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 6667777888776654 677787 455556665433 3577788887
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-09 Score=110.48 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=134.6
Q ss_pred CCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC-eEEEEEeecceEeeeecCcccCeeE
Q 001318 816 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 816 dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
+|.+++..+.|+..+.+...+-.++. ++.+.|.-..+.. +++-++.|..|| .+-|||..+++ +..+...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence 78899999999999988776554433 4677799888888 777899999999 99999998776 4555666788999
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC----CeEEEEEcCC
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----TQLAIFETTK 969 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d----~~v~vwd~~~ 969 (1101)
+..++||++++.+-....+.+.|++++... .+...+ .+-|+.+.|+|+++++|.+ -+ ..|++||+.+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~---~idkS~-----~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVR---LIDKSE-----YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCee---Eecccc-----cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 999999999999988888999999997632 222111 1478999999999999985 33 4799999999
Q ss_pred ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE
Q 001318 970 LECVKQWVPRESSAPITHATFSCDSQLVYACF 1001 (1101)
Q Consensus 970 ~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s 1001 (1101)
++....-...+ .=.+-+|.|||++|.--+
T Consensus 479 ~Kiy~vTT~ta---~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTTPTA---YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecCCcc---cccCcccCCCCcEEEEEe
Confidence 98876655433 335668999999887554
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-08 Score=118.02 Aligned_cols=471 Identities=12% Similarity=0.132 Sum_probs=258.3
Q ss_pred CCCCCeEEEEEecCCCeEEEEEcCCeEEEE----EccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
...+.|.++.|-+|...|+.+..+|.|.+. +..+.. +.. ...-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~---VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEI---VGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEE---EEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 345789999999999999999999999999 555433 221 223467899999999999 5555555677766
Q ss_pred EeCCCCceE------------------------EEecC------------------------cccCeEEEeeeecCCccE
Q 001318 481 WDATNGAKQ------------------------YIFEG------------------------HEAPVYSVCPHHKENIQF 512 (1101)
Q Consensus 481 wd~~~~~~~------------------------~~~~~------------------------h~~~v~~v~~~~~~~~~~ 512 (1101)
-+ ++-..+ ..|+| +...-..++| .+||.+
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~y 223 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEY 223 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcE
Confidence 53 211111 11211 1111223444 788888
Q ss_pred EEEEec---C---CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC---CC
Q 001318 513 IFSTAL---D---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DF 583 (1101)
Q Consensus 513 l~s~~~---d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg 583 (1101)
++..+. . ..+|+|+-+ +.....-+...+ --..++|.|.|+++++.-. ..
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g---------------------Le~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG---------------------LEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC---------------------ccCCccCCCCCCEEEEEEEcCCCc
Confidence 888775 2 468888654 111111111111 1234667777777777543 45
Q ss_pred cEEEEECCCCceeEEEcCC--CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 584 SIKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
.|.+|.- +|-.-..|... .....|..+.|++|+..||+...|. |++|...+-.-.++.--.
T Consensus 282 ~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~--------------- 344 (928)
T PF04762_consen 282 DVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR--------------- 344 (928)
T ss_pred EEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE---------------
Confidence 6777774 44333333322 2334689999999999999988655 999987765211111000
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
| .....+
T Consensus 345 ~-------------------------------------------------------------------------~~~~~~ 351 (928)
T PF04762_consen 345 F-------------------------------------------------------------------------SSSESV 351 (928)
T ss_pred c-------------------------------------------------------------------------cCCCCC
Confidence 0 011122
Q ss_pred EEEEEcCCCc-eEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec-CCCE
Q 001318 742 SRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY 819 (1101)
Q Consensus 742 ~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~-dg~~ 819 (1101)
..+.|+|... .|...+.+|.+..+++ .|+...+.. .+| |...
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~------------------~~~v~~s~~------------------~~~~D~g~ 395 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDF------------------AWDVSRSPG------------------SSPNDNGT 395 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEE------------------EEEEEecCC------------------CCccCceE
Confidence 3366666433 3566666677766654 122211110 011 1223
Q ss_pred EEEEeCCeEEEEECCCCcee-----eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE--------eeeec
Q 001318 820 VMSASGGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--------KSKLK 886 (1101)
Q Consensus 820 la~~sdg~i~vwd~~~~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~--------~~~l~ 886 (1101)
+++..+.++.+-.++..... ..+. -...|.+++|++ ++..+|+-..||.|.+|....... ...+.
T Consensus 396 vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 473 (928)
T PF04762_consen 396 VAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSIS 473 (928)
T ss_pred EEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcc
Confidence 34444556777776643321 2233 346799999999 676688899999999998543221 11111
Q ss_pred ----------CcccCeeEEEEcCCCCEEEEEeCC---CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 887 ----------GHSKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 887 ----------~h~~~V~~l~~s~dg~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
.-...+..++|..+...++....+ ..+.++++...+.. .......... ..+..+...++...
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~ 548 (928)
T PF04762_consen 474 LDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS-ASVESSTEVD----GVVLIISSSPDSGS 548 (928)
T ss_pred cccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc-eeEEEEeccC----ceEEEEeeCCCCcE
Confidence 123457888898887777666554 56888887443211 1111111111 23444444555543
Q ss_pred EEE-EeCCeEEEEEcCCceeee-eccCCCCCCCeeEEEEcCCCC---EEEEEEcCCeEEEEEcCCceeeeecCCCcccCC
Q 001318 954 FLV-VHETQLAIFETTKLECVK-QWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYLPA 1028 (1101)
Q Consensus 954 la~-~~d~~v~vwd~~~~~~~~-~~~~~~h~~~i~~l~~spdg~---~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 1028 (1101)
++. ..+|.+..++........ .+. . ...-..++...+.. .++.=+..|.+++ +++.++.
T Consensus 549 ~~~q~~~G~v~~~~~~~~~~~~~~fp--~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la~--------- 612 (928)
T PF04762_consen 549 LYIQTNDGKVFQLSSDGELSQIVKFP--Q-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLAS--------- 612 (928)
T ss_pred EEEEECCCEEEEeecCCCccccccCC--C-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEec---------
Confidence 444 678888866655433221 221 1 11222233333333 3444444555554 3444421
Q ss_pred CCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1029 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1029 ~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
. +. +...+. .+|+.......+++.++.
T Consensus 613 ~-----~t--SF~v~~---~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 613 N-----CT--SFAVTD---SFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred C-----Cc--eEEEEc---CEEEEEecCceEEEEECc
Confidence 1 33 444442 456555567889999998
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-10 Score=121.89 Aligned_cols=112 Identities=20% Similarity=0.302 Sum_probs=92.6
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec---cCeEEEEEee
Q 001318 804 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR 877 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~ 877 (1101)
..++|.++.|+++++-++++. -.++.|||++ +..+..+ ..++-+++-|+| .|++|+.++- -|.+-|||+.
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEecc
Confidence 478999999999999888775 3789999986 4666555 367778999999 8999888774 4799999999
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeC------CCceEEEeCCCc
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------DSQLCVWSSDGW 921 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------D~~v~iwd~~~~ 921 (1101)
+.+++..+..-.. +-+.|+|||++++|++. |+.++||++.+.
T Consensus 345 n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 345 NRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred chhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 9999998876544 45799999999998875 678999999773
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=130.61 Aligned_cols=277 Identities=11% Similarity=0.164 Sum_probs=201.9
Q ss_pred CCCccccccCcccee-eccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccc
Q 001318 691 MNGDVRSLADVKPRI-TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 769 (1101)
Q Consensus 691 ~~~~~~~~~~~~~l~-~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 769 (1101)
....+..++|+++++ +|..--.|++||+.+... .+...-....|.-..++.|-..++....|..|.+...
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-- 123 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-- 123 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEccccee-------eeeecccccceeEEEeccchhhheEeecCceeeehhh--
Confidence 355677889998876 555567899999986432 1111123445555666667666777777777765431
Q ss_pred cccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe-cCCCEEEEEeCCeEEEEECCCCceeeEecCCCCC
Q 001318 770 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA 848 (1101)
Q Consensus 770 ~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s-~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~ 848 (1101)
-|.-....+ ...-..++++ +...++++|+...|+-++++.|+.+..|....+.
T Consensus 124 ---------------------~G~hy~~RI-----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~ 177 (703)
T KOG2321|consen 124 ---------------------YGRHYRTRI-----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGE 177 (703)
T ss_pred ---------------------cCeeeeeec-----CcCCccccccCCCccEEEeecCcceEEEEcccccccccccccccc
Confidence 222111111 1122344444 4555677777888999999999999999888899
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec------Cccc-----CeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK------GHSK-----RITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~------~h~~-----~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
++++..++ -..+||+|+.+|.|..||..+.+.+.++. .|.+ .|+++.|+.||-.+++|..+|.|.|||
T Consensus 178 lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 178 LNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred ceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 99999999 88899999999999999998876665553 2433 399999999999999999999999999
Q ss_pred CCCcccccceeeecCCCCCCCCCCCeEEEEcCC--CcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC
Q 001318 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ 995 (1101)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~ 995 (1101)
+.+.+.. ...-... ..+|..+.|.+. +..+++.....++|||-.+|+....+.+ ...+..+|+-|++.
T Consensus 257 LRa~~pl---~~kdh~~----e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sG 326 (703)
T KOG2321|consen 257 LRASKPL---LVKDHGY----ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSG 326 (703)
T ss_pred cccCCce---eecccCC----ccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCc
Confidence 9985421 1111111 147888888765 5566667778899999999999887754 55799999999999
Q ss_pred EEEEEEcCCeEEEEEcCC
Q 001318 996 LVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 996 ~l~s~s~dg~v~vwd~~~ 1013 (1101)
+++++..++.+..|-+..
T Consensus 327 m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIPS 344 (703)
T ss_pred eEEEecCCCcceeEEccc
Confidence 999999998888887654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-10 Score=132.64 Aligned_cols=213 Identities=12% Similarity=0.117 Sum_probs=134.8
Q ss_pred cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc---CCeEEEEEccCCceeeee
Q 001318 369 DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQH 445 (1101)
Q Consensus 369 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~ 445 (1101)
.|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+|++.+++... .
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l 238 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V 238 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-c
Confidence 68888887654322 4456678999999999999997653 4579999999876432 2
Q ss_pred eeeccccCCeeEEEEcCCCCeEEEEEecCCC--cEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEec-CCcE
Q 001318 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKI 522 (1101)
Q Consensus 446 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg~i 522 (1101)
..+ .+.+..++|+|||+. ++++.+.++ .|++||+.+++..... .+...+....|+ ++|+.|+..+. ++..
T Consensus 239 ~~~---~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wS--PDG~~I~f~s~~~g~~ 311 (429)
T PRK03629 239 ASF---PRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWF--PDSQNLAYTSDQAGRP 311 (429)
T ss_pred cCC---CCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEEC--CCCCEEEEEeCCCCCc
Confidence 223 334557899999996 233334444 5999999888765443 344456667774 56677766665 3455
Q ss_pred EEE--ecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeE
Q 001318 523 KAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLT 597 (1101)
Q Consensus 523 ~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~ 597 (1101)
.+| |+.++.. ..+....... ....|+|+|++++..+.+ ..|++||+.+++..
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~---------------------~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~- 368 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQN---------------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 368 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCc---------------------cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence 555 4443322 2221111112 234556666667665432 45889999888644
Q ss_pred EEcCCCCCCCcCeEEEccCCCEEEEEeCCCc---EEEEEec
Q 001318 598 SIDADGGLPASPRIRFNKDGCLLAVSTNDNG---IKILATS 635 (1101)
Q Consensus 598 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~iw~~~ 635 (1101)
.+.... ......|+|||++|+..+.++. +.++++.
T Consensus 369 ~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 369 VLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 333221 2346889999999999988765 5566653
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-11 Score=124.06 Aligned_cols=95 Identities=14% Similarity=0.245 Sum_probs=79.0
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 881 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 881 (1101)
...+++++...|+++++++|. -+.+..||++.+..... +.+..+.|+++..+| ..++||+++-|+.|||+|+++.++
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchh
Confidence 356688888889999999998 79999999999888776 888899999999999 889999999999999999999777
Q ss_pred eeeecCcccCeeEEEEcCC
Q 001318 882 KSKLKGHSKRITGLAFSHA 900 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~d 900 (1101)
+....- ...+++|-+.++
T Consensus 325 l~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 325 LHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred hhhhhh-hccccEEEecCC
Confidence 665442 334667766544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.6e-10 Score=112.36 Aligned_cols=283 Identities=9% Similarity=0.083 Sum_probs=184.3
Q ss_pred CCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC---ceEEeeeccccccCCCCceeeeecCcc
Q 001318 710 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL 786 (1101)
Q Consensus 710 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~l 786 (1101)
+..|.+|++.+.........+ .......+-++|+|+++.|.++..+ |.|..|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 567999999843322111111 2256778899999999999888765 55655554
Q ss_pred ccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCC-CceeeE--ecCCCCC----------eEE
Q 001318 787 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF 851 (1101)
Q Consensus 787 w~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i~~ 851 (1101)
|..+|++...-... ....+.+.++++++|++++++. .|.|.++-+.+ |..... +-.|.+. +-.
T Consensus 72 -D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 72 -DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred -cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 33444422211100 1233448899999999999998 58999999965 433221 1123332 778
Q ss_pred EEEecCCCcEEEEEec-cCeEEEEEeecceEeeeec---CcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCC--cccc
Q 001318 852 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG--WEKQ 924 (1101)
Q Consensus 852 l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~~l~---~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~--~~~~ 924 (1101)
..|.| ++++|++.+- --.|.+|++..|++...-. .-...-..|.|+|++++..... -+++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 88999 8988888753 2389999999776442211 1223457899999999987666 489999999988 3333
Q ss_pred cceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe--CCeEEEEEcCC--ceeeeeccCCCCCCCeeEEEEcCCCCEEEEE
Q 001318 925 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYAC 1000 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--d~~v~vwd~~~--~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~ 1000 (1101)
..+.+...............+.+++||++|.++. ...|.+|.+.. ++....-....+....+...|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 3333333333333345678899999999999973 44788887654 3322111112334557899999999999988
Q ss_pred EcCC-eEEEEEc--CCceeee
Q 001318 1001 FLDA-TVCVFSA--ANLKLRC 1018 (1101)
Q Consensus 1001 s~dg-~v~vwd~--~~~~~~~ 1018 (1101)
..++ .|.||.+ .+|++-.
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 309 NQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred ccCCCcEEEEEEcCCCceEEe
Confidence 8654 5888866 4666543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-13 Score=150.14 Aligned_cols=215 Identities=17% Similarity=0.171 Sum_probs=148.5
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.|...-+|++||-+.++ |+.|+..|.|+++++.+|..... ..+|..+|+-+.-|.||..+
T Consensus 1099 d~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred ccccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCccee
Confidence 37888999999999996 99999999999999999987653 78999999999999999998
Q ss_pred EEEEcC--CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cC---cc
Q 001318 423 GVAYSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EG---HE 496 (1101)
Q Consensus 423 as~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~---h~ 496 (1101)
++.+.- ....+|++.+- ....+++. .-.++.|+....+ -+.|.....+.|||++++..+.++ .+ ..
T Consensus 1159 Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred eeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 876543 35789998762 22222332 3457889877553 333444457889999999887763 22 12
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
..-++..|+|. ..+++ .||. +||.+..+.+..|..-.. . ..=.|+|.|+.+
T Consensus 1231 y~~n~a~FsP~--D~LIl---ndGv--LWDvR~~~aIh~FD~ft~-------~---------------~~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1231 YSNNLAHFSPC--DTLIL---NDGV--LWDVRIPEAIHRFDQFTD-------Y---------------GGGGFHPSGNEV 1281 (1516)
T ss_pred hhccccccCCC--cceEe---eCce--eeeeccHHHHhhhhhhee-------c---------------ccccccCCCceE
Confidence 22244556443 34444 2554 499998766655432211 0 011377888888
Q ss_pred EEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
+.-+ .|||+++.+.++....-.. ..+.|+..|..++..
T Consensus 1282 IINS-----EIwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1282 IINS-----EIWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred Eeec-----hhhhhHHHHHHhcCccccc----eEEEeccCccchhhh
Confidence 8866 4899999988877764432 458888888766643
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=122.55 Aligned_cols=325 Identities=14% Similarity=0.247 Sum_probs=201.8
Q ss_pred CCCEEEEEeCCCcEEEEEC-CCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccc
Q 001318 572 TKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 650 (1101)
Q Consensus 572 ~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 650 (1101)
..+-+++.+.|.++++|-- +.++.-..+. +.....++++.+.++.+.|++|-.+|++.-+.+..........+
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r----- 108 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK----- 108 (404)
T ss_pred CCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh-----
Confidence 3345999999999999954 4455444443 23345688999999999999999999998887654322111110
Q ss_pred ccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccc
Q 001318 651 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 730 (1101)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 730 (1101)
.|
T Consensus 109 ----------------------------------------------------------------~~-------------- 110 (404)
T KOG1409|consen 109 ----------------------------------------------------------------DY-------------- 110 (404)
T ss_pred ----------------------------------------------------------------hh--------------
Confidence 00
Q ss_pred ccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeE
Q 001318 731 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 810 (1101)
Q Consensus 731 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~ 810 (1101)
..|...+..+.|+.....+++.+.|..+. |-... .|..+.... .....++
T Consensus 111 ----~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e---------------------~~~~lg~Y~----~~~~~t~ 160 (404)
T KOG1409|consen 111 ----LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE---------------------SGNRLGGYN----FETPASA 160 (404)
T ss_pred ----hhhhcceeeEEecCCceeEEEeccccceE-EEeec---------------------cCCcccceE----eeccCCC
Confidence 22778889999998888899998886654 33211 111110000 0011111
Q ss_pred EEEecCCCEEEEEe-CCeEEEEE--CCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce-Eeeeec
Q 001318 811 FALSKNDSYVMSAS-GGKISLFN--MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLK 886 (1101)
Q Consensus 811 ~~~s~dg~~la~~s-dg~i~vwd--~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~~~~l~ 886 (1101)
+.+.-. +..+|. .|.|..-. ......+.++.+|.+.+++++|.+ ..++|.+|..|..|.+||+.-.+ ....+.
T Consensus 161 ~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~ 237 (404)
T KOG1409|consen 161 LQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQ 237 (404)
T ss_pred CceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeec
Confidence 111111 333444 45544433 345677888999999999999999 88999999999999999997543 346678
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeee-------------------------cCCCCCCCCC-
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ-------------------------IPTGRTPTAQ- 940 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-------------------------~~~~~~~~~~- 940 (1101)
+|.+.|..+...+--+.|++++.||.|.+|+++........-+. +...|-...+
T Consensus 238 gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~ 317 (404)
T KOG1409|consen 238 GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGK 317 (404)
T ss_pred cchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence 99999999999888899999999999999998764322211000 0000000000
Q ss_pred CCeEEEEcCCCcEEEEEeCCeEEEEEcCCce-----eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 941 SDTRVQFHQDQIHFLVVHETQLAIFETTKLE-----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 941 ~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~-----~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
.+...+-+.-..+...+..-.+|+-|.-... ....-.++.-...|+.+.+-.+-.+|+|++.|..|+|||+..
T Consensus 318 avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 318 AVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1111111111222222444455555432111 100111112245799999998889999999999999999864
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-10 Score=112.74 Aligned_cols=238 Identities=14% Similarity=0.165 Sum_probs=156.2
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE-E
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-A 425 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~ 425 (1101)
...+++|+.|.. -+++|. |.-.+||+.+.-+...++.+ +.+.+.-+..---.++||- |
T Consensus 7 ~~lsvs~NQD~S-cFava~-~~Gfriyn~~P~ke~~~r~~-------------------~~~G~~~veMLfR~N~laLVG 65 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-CFAVAT-DTGFRIYNCDPFKESASRQF-------------------IDGGFKIVEMLFRSNYLALVG 65 (346)
T ss_pred ceeEEEEccCCc-eEEEEe-cCceEEEecCchhhhhhhcc-------------------ccCchhhhhHhhhhceEEEec
Confidence 345599999988 366655 45679999876444322111 1111111111112345443 3
Q ss_pred EcC------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC-CCceEEEecCcc--
Q 001318 426 YSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE-- 496 (1101)
Q Consensus 426 ~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~-- 496 (1101)
|.+ ..|.|||=...+++. ++. ...+|.++.++++- ++.. ..+.|+||... +.+.++.+....
T Consensus 66 Gg~~pky~pNkviIWDD~k~~~i~---el~-f~~~I~~V~l~r~r----iVvv-l~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 66 GGSRPKYPPNKVIIWDDLKERCII---ELS-FNSEIKAVKLRRDR----IVVV-LENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred CCCCCCCCCceEEEEecccCcEEE---EEE-eccceeeEEEcCCe----EEEE-ecCeEEEEEcCCChhheeeeecccCC
Confidence 332 469999955554444 232 46889999998763 3333 35789999987 566666664322
Q ss_pred cCeEEEeeeecCCccEEEEEe-cCCcEEEEecCCCCc--eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCC
Q 001318 497 APVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1101)
....+++ +..+..+|+.-+ .-|.|++-|+..... ...+..|... |.+++.+-+|
T Consensus 137 kGlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~---------------------Iacv~Ln~~G 193 (346)
T KOG2111|consen 137 KGLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSD---------------------IACVALNLQG 193 (346)
T ss_pred CceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCc---------------------eeEEEEcCCc
Confidence 3344444 344434555444 358899998876444 3455555554 4455555555
Q ss_pred CEEEEEeCCCc-EEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 574 NRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 574 ~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..++++|..|+ |||||..+|+.+..+........+.+++|||++.+|+++++.|+++|+.+...
T Consensus 194 t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 194 TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 68999999888 79999999999999976555667999999999999999999999999998764
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-10 Score=124.24 Aligned_cols=251 Identities=14% Similarity=0.202 Sum_probs=163.2
Q ss_pred CCCeeEEEEecCCCEEEEEeC-----CeEEEEECCCC--c--eeeEecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEE
Q 001318 805 EEAVPCFALSKNDSYVMSASG-----GKISLFNMMTF--K--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 874 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~sd-----g~i~vwd~~~~--~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vw 874 (1101)
......++++|++++|.+... +.|..|++... + .+.+..........++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 445677899999999999862 57888888753 2 2333332345567899999 788887776 58999999
Q ss_pred Eeec-ceEeee---ec----------CcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCCcc--cccceeeecCCCCCC
Q 001318 875 NVRV-DEVKSK---LK----------GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWE--KQKNRFLQIPTGRTP 937 (1101)
Q Consensus 875 d~~~-~~~~~~---l~----------~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~~~--~~~~~~~~~~~~~~~ 937 (1101)
++.. +.+... +. .-.....++.|+|||++|++... ...|.+|+++... ......+....+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9986 433322 11 11234678999999998887643 3469999997754 222223344444
Q ss_pred CCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcC--Cce--eeeeccC--CCC--CCCeeEEEEcCCCCEEEEEE-cCCeE
Q 001318 938 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLE--CVKQWVP--RES--SAPITHATFSCDSQLVYACF-LDATV 1006 (1101)
Q Consensus 938 ~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~--~~~--~~~~~~~--~~h--~~~i~~l~~spdg~~l~s~s-~dg~v 1006 (1101)
...+.++|+|+|+++.+. .++.|.+|++. ++. .+..+.. .+. ......|+++|||++|+++. .+.+|
T Consensus 192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 356999999999999884 56789999988 443 2222221 111 23688999999999987766 56689
Q ss_pred EEEEcC--Cceee--eecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe-cCCcEEEEeccCCCcccc
Q 001318 1007 CVFSAA--NLKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKWG 1072 (1101)
Q Consensus 1007 ~vwd~~--~~~~~--~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~-~dg~v~vW~~~~~~~~~~ 1072 (1101)
.+|+++ +|++. ..+. ..| ..|..++++| +|++|+++. .++.|.+|++....+.|.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~-----~~G-----~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVP-----TGG-----KFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEECTTTTTEEEEEEEE-----ESS-----SSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEEEecCCCceEEEEEEe-----CCC-----CCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 999993 34432 2222 112 4466899999 677776665 667999999865444443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.6e-10 Score=117.86 Aligned_cols=198 Identities=9% Similarity=0.167 Sum_probs=133.5
Q ss_pred CCCCeeEEEEecCCC--EEEEE---eC---CeEEEEECCCCceeeEec--C-CCCCeEEEEEecCCCcEEEEEec-----
Q 001318 804 PEEAVPCFALSKNDS--YVMSA---SG---GKISLFNMMTFKTMATFM--P-PPPAATFLAFHPQDNNIIAIGMD----- 867 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~--~la~~---sd---g~i~vwd~~~~~~~~~~~--~-~~~~i~~l~~sp~d~~~lasg~~----- 867 (1101)
|...|..+.+||.+. .+|+- .+ +.|+||.......-..+. . ....-..+.|.+.+..+|+.++.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 667788899998744 44442 12 469999876322211111 0 11223456677634445544432
Q ss_pred ------cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEE--eCCCceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 868 ------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS--GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 868 ------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~--s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
..+++++++...++.-.+. -.++|.++.|+++|+.++.+ -.=.++.|+|++. ........|
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-----~~v~df~eg----- 312 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-----KPVFDFPEG----- 312 (566)
T ss_pred CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----CEeEeCCCC-----
Confidence 2378888877444444443 47899999999999776543 3456799999887 233444444
Q ss_pred CCCeEEEEcCCCcEEEE-Ee---CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEc------CCeEEEE
Q 001318 940 QSDTRVQFHQDQIHFLV-VH---ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVF 1009 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~-~~---d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~------dg~v~vw 1009 (1101)
+=..+.|+|.|++++. |. .|.+.|||+.+.+++..+. ...-+-+.|+|||++++|++. |..++||
T Consensus 313 -pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 313 -PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred -CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence 3368999999999988 42 4789999999999888876 345667899999999998884 7889999
Q ss_pred EcCCceeee
Q 001318 1010 SAANLKLRC 1018 (1101)
Q Consensus 1010 d~~~~~~~~ 1018 (1101)
++. |.++.
T Consensus 388 hyt-G~~l~ 395 (566)
T KOG2315|consen 388 HYT-GSLLH 395 (566)
T ss_pred Eec-Cceee
Confidence 975 55544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-11 Score=136.27 Aligned_cols=204 Identities=11% Similarity=0.084 Sum_probs=133.6
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc---CeEEEEEeecceEeeeecCcccCeeEEEEcCCCC
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 902 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 902 (1101)
..|.++|.. +...+.+..+...+.+.+|+| |++.|+..+.+ ..|++||+.+++.. .+....+.+.+.+|||||+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence 468888874 455555656777899999999 88888877643 36999999888653 3333445567899999999
Q ss_pred EEE-EEeCCCceEEEeCC--CcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe--CCeEEEE--EcCCceeeee
Q 001318 903 VLV-SSGADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIF--ETTKLECVKQ 975 (1101)
Q Consensus 903 ~l~-s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--d~~v~vw--d~~~~~~~~~ 975 (1101)
.|+ +.+.++...||.++ ++.. ..... +. .......|+|||++++... ++...+| ++.++.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~-----~~lt~-~~---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGL-----RRLTQ-SS---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCc-----EECCC-CC---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 887 56778887777654 3321 11111 11 2346678999999988743 3445555 5555543322
Q ss_pred ccCCCCCCCeeEEEEcCCCCEEEEEEcCC---eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 976 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 976 ~~~~~h~~~i~~l~~spdg~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
.. . .......+|||||++|+..+.++ .|++||+.+++... +. .+ .. .. ..+|+| |++.|+.
T Consensus 324 t~-~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt------~~--~~-~~--~p~~sp-dg~~l~~ 387 (427)
T PRK02889 324 TF-T--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT------DT--TR-DE--SPSFAP-NGRYILY 387 (427)
T ss_pred ec-C--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc------CC--CC-cc--CceECC-CCCEEEE
Confidence 21 1 22345679999999998777654 69999999887543 22 11 01 12 578999 6787777
Q ss_pred EecCC
Q 001318 1053 GLSDG 1057 (1101)
Q Consensus 1053 ~~~dg 1057 (1101)
.+.++
T Consensus 388 ~~~~~ 392 (427)
T PRK02889 388 ATQQG 392 (427)
T ss_pred EEecC
Confidence 66554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-11 Score=137.68 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=138.5
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEec--CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 414 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 414 (1101)
....+..+...+.+.+|+|||++|+.+... +..|.+||+.+++... +..+.+...+.+
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~ 254 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPS 254 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCce
Confidence 344455678889999999999974444322 3469999998876533 233344556889
Q ss_pred EecCCCeEEE-EEcCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEec-CCCc--EEEEeCCCCce
Q 001318 415 WSPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAK 488 (1101)
Q Consensus 415 ~spdg~~las-~~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d~~--i~iwd~~~~~~ 488 (1101)
|||||+.|+. .+.++ .|.+||+.+++... +..+.......+|+|||+. ++..+ .++. |+++|+.+++.
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----LTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----CccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCe
Confidence 9999998864 45555 69999999876432 5556556678999999995 44433 4444 77777777664
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCC---cEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
.. +..+.......+| +++|++|+..+.++ .|.+||+.+++.. .+.. .......
T Consensus 329 ~~-lt~~g~~~~~~~~--SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p------------------- 384 (433)
T PRK04922 329 ER-LTFQGNYNARASV--SPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESP------------------- 384 (433)
T ss_pred EE-eecCCCCccCEEE--CCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCc-------------------
Confidence 33 2222233445666 45667777665433 6889998765433 2221 1112223
Q ss_pred EEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 566 VVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
.|+|+|++++..+. .+.|+++++.. .....+.... ..+...+|+|
T Consensus 385 --~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 385 --SFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred --eECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 45555556665543 34688888854 4444444322 2456677776
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-10 Score=133.27 Aligned_cols=216 Identities=12% Similarity=0.073 Sum_probs=140.7
Q ss_pred CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc---CCeEEEEEccCCceeee
Q 001318 368 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 444 (1101)
Q Consensus 368 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 444 (1101)
..|.+||....... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++...
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~- 240 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL- 240 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-
Confidence 47888888654332 25677889999999999999998764 4689999999886432
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCCc--EEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEec-CC-
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG- 520 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg- 520 (1101)
+..+.+.+...+|+|||+. ++++.+.++. |++||+.++.. ..+..+........|+ +||+.|+..+. +|
T Consensus 241 ---l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~ 313 (435)
T PRK05137 241 ---VGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS 313 (435)
T ss_pred ---eecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence 4456677889999999996 3456665555 77789887765 4455566556667774 56677776653 33
Q ss_pred -cEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcee
Q 001318 521 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 596 (1101)
Q Consensus 521 -~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 596 (1101)
.|.+||+..+.. ..+......+. ...|+|+|+.++....+ ..|.+||+.++..
T Consensus 314 ~~Iy~~d~~g~~~-~~lt~~~~~~~---------------------~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~- 370 (435)
T PRK05137 314 PQLYVMNADGSNP-RRISFGGGRYS---------------------TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE- 370 (435)
T ss_pred CeEEEEECCCCCe-EEeecCCCccc---------------------CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-
Confidence 577777654332 22221122222 34455566666665432 3688889865543
Q ss_pred EEEcCCCCCCCcCeEEEccCCCEEEEEeCC------CcEEEEEecCc
Q 001318 597 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG 637 (1101)
Q Consensus 597 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iw~~~~~ 637 (1101)
..+.. .. .+....|+|||++|+..+.+ ..+.++++..+
T Consensus 371 ~~lt~-~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 371 RILTS-GF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EeccC-CC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 33332 11 36678999999998876543 24666776544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-09 Score=116.91 Aligned_cols=205 Identities=12% Similarity=0.099 Sum_probs=129.6
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-ceEe--
Q 001318 809 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK-- 882 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~-- 882 (1101)
..++++|||+++++.. +..|.+.|+.+++.+.++.-.. ...-...+. +. +. +-+.||......+.+ ++..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEe
Confidence 4577888888888765 5789999999999988876432 122222222 22 11 123344444433322 1111
Q ss_pred --eeecCcccCee-EEEEcC-CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC----CCCCCCCeEEEEcCCCcEE
Q 001318 883 --SKLKGHSKRIT-GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIHF 954 (1101)
Q Consensus 883 --~~l~~h~~~V~-~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l 954 (1101)
..+.+-..++. .-.|++ ||+++..... |+|.+.|+................. ...++...-++++++|+.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 11111001110 014455 8888877666 9999999765443333333322211 1122445569999999998
Q ss_pred EEEe---C--------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC-EEEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 955 LVVH---E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 955 a~~~---d--------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.+.. . +.|.++|..+++.+..+.. ...+..++|||||+ +|++.+ .++.|.|+|..+++.+.++.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8832 1 5799999999999998875 45899999999999 777666 57889999999999998873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-11 Score=136.10 Aligned_cols=234 Identities=15% Similarity=0.133 Sum_probs=138.4
Q ss_pred CCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecC--CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccC
Q 001318 328 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 405 (1101)
Q Consensus 328 ~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1101)
+|..+........+..+...+.+.+|||||+.|+++...+ ..|.+||+.+++... +..
T Consensus 178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~ 237 (427)
T PRK02889 178 LQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VAN 237 (427)
T ss_pred EEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eec
Confidence 3333333333444556788999999999999744444333 359999999886543 222
Q ss_pred CCCCeEEEEEecCCCeEEE-EEcCCeEEEEEc--cCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe
Q 001318 406 PGVSVNRVIWSPDGSLFGV-AYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las-~~~d~~i~iwd~--~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
..+.+.+.+|||||+.|+. .+.++...||.+ .++. .. .+..+...+....|+|||+. ++++...++...||.
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYR 312 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEE
Confidence 3445678999999998875 567777666654 4443 22 35556666778899999995 233444456666665
Q ss_pred C--CCCceEEEecCcccCeEEEeeeecCCccEEEEEecCC---cEEEEecCCCCceeeecCCCCceeEEEEccCCceEEe
Q 001318 483 A--TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 483 ~--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
+ .+++... +..+........| +++|++|+..+.++ .|.+||+.+++... +... .....
T Consensus 313 ~~~~~g~~~~-lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~------------ 375 (427)
T PRK02889 313 MPASGGAAQR-VTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDES------------ 375 (427)
T ss_pred EECCCCceEE-EecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccC------------
Confidence 4 4444322 2212222334556 56678888776554 68999987754332 2111 11223
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
..|+|+|+.|+.++.++ .+++.++ ++.....+....+ .+...+|+|
T Consensus 376 ---------p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~~~~p~wsp 424 (427)
T PRK02889 376 ---------PSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--DVREPSWGP 424 (427)
T ss_pred ---------ceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--CCCCCccCC
Confidence 34555555666655332 3555566 4555555543322 456677776
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-10 Score=117.60 Aligned_cols=362 Identities=14% Similarity=0.196 Sum_probs=224.6
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC-------
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD------- 475 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d------- 475 (1101)
+....-++..++|||.|.+|++....+ |.+|+-.....+. .+. | ..|..+.|||.++ +|++-+..
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~---~~~-~-~~V~~~~fSP~~k--YL~tw~~~pi~~pe~ 99 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV---RFR-H-PDVKYLDFSPNEK--YLVTWSREPIIEPEI 99 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhhee---eee-c-CCceecccCcccc--eeeeeccCCccChhh
Confidence 334566899999999999999887666 9999988766443 222 3 5799999999999 78876543
Q ss_pred --------CcEEEEeCCCCceEEEecCcccC--eE-EEeeeecCCccEEEEEecCCcEEEEecCCCCceeee-cCCCCce
Q 001318 476 --------KTIKVWDATNGAKQYIFEGHEAP--VY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWC 543 (1101)
Q Consensus 476 --------~~i~iwd~~~~~~~~~~~~h~~~--v~-~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~v 543 (1101)
..+.+||+.+|..+..+.+...+ .+ -+.|+.+. .+++-. ....+.++++...-....+ ......+
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGI 176 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhh-ccCeEEEEecCCccccCchhhccccce
Confidence 35999999999999999876655 44 35564433 444433 3456888986221111111 1113456
Q ss_pred eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE
Q 001318 544 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 544 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
....++|.+.. .. .+-|.|. ..+.++++++|.+..+..+.+-....- .-..+.|.+.|++|++-
T Consensus 177 ~dFsisP~~n~--------~~-la~~tPE-----k~~kpa~~~i~sIp~~s~l~tk~lfk~--~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 177 LDFSISPEGNH--------DE-LAYWTPE-----KLNKPAMVRILSIPKNSVLVTKNLFKV--SGVQLKWQVLGKYLLVL 240 (561)
T ss_pred eeEEecCCCCC--------ce-EEEEccc-----cCCCCcEEEEEEccCCCeeeeeeeEee--cccEEEEecCCceEEEE
Confidence 66667776530 11 1122221 146788999999987766554432211 12357888888887754
Q ss_pred eCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccc
Q 001318 624 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP 703 (1101)
Q Consensus 624 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1101)
... +..+++...
T Consensus 241 ~~t------~~ksnKsyf-------------------------------------------------------------- 252 (561)
T COG5354 241 VMT------HTKSNKSYF-------------------------------------------------------------- 252 (561)
T ss_pred EEE------eeeccccee--------------------------------------------------------------
Confidence 321 111110000
Q ss_pred eeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeee--cCceEEeeeccccccCCCCceeee
Q 001318 704 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATAS 781 (1101)
Q Consensus 704 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~ 781 (1101)
.+..+.++++......... ...+.|...+|.|.++.+++.+ .+..+.++++..
T Consensus 253 -----gesnLyl~~~~e~~i~V~~--------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~------------ 307 (561)
T COG5354 253 -----GESNLYLLRITERSIPVEK--------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG------------ 307 (561)
T ss_pred -----ccceEEEEeecccccceec--------cccccceeeeecccCCceeEEecccccceeeccccc------------
Confidence 0123344444321111110 1457899999999998877666 356677776532
Q ss_pred ecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-C---CeEEEEECCCCceee-EecCCCCCeEEEEEec
Q 001318 782 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMA-TFMPPPPAATFLAFHP 856 (1101)
Q Consensus 782 ~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp 856 (1101)
. +.... ....=..+.|+|.+++++.++ | |.+.+||....-.+. .+.+ ...+-+.|+|
T Consensus 308 ----------N-l~~~~-----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wsp 369 (561)
T COG5354 308 ----------N-LRFYF-----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSP 369 (561)
T ss_pred ----------c-eEEec-----CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccC
Confidence 1 11111 233345678999999999987 5 789999987654433 5543 3456678999
Q ss_pred CCCcEEEEEe------ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC
Q 001318 857 QDNNIIAIGM------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 911 (1101)
Q Consensus 857 ~d~~~lasg~------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~ 911 (1101)
|++++.+.. .|..|.|||+...... ..+.+.|-|.|++.-+.+.+.
T Consensus 370 -d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 370 -DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -CceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 899888775 4778999998654321 466788888887777666554
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-11 Score=119.40 Aligned_cols=155 Identities=12% Similarity=0.214 Sum_probs=108.8
Q ss_pred EEEEEecCCCcEEEEEec----------cCeEEEEEeec-ceEeeeecC-cccCeeEEEEcCCCCEEEEE--eCCCceEE
Q 001318 850 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVSS--GADSQLCV 915 (1101)
Q Consensus 850 ~~l~~sp~d~~~lasg~~----------dg~v~vwd~~~-~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~--s~D~~v~i 915 (1101)
..+.|++ .|.+|++-.. -|...+|.+.. +.....+.- ..++|.+++|+|+|+.++.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 6665554332 13455565532 223333332 34579999999999987654 45779999
Q ss_pred EeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe----CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEc
Q 001318 916 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS 991 (1101)
Q Consensus 916 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~s 991 (1101)
||++.. ....... ..+..+.|||+|++++++. .|.|.+||+.+.+.+.... ...++.++||
T Consensus 88 yd~~~~-----~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVKGK-----KIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred EcCccc-----EeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 999731 1222221 2557899999999999942 4679999999999887764 3357999999
Q ss_pred CCCCEEEEEEc------CCeEEEEEcCCceeeeecC
Q 001318 992 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 992 pdg~~l~s~s~------dg~v~vwd~~~~~~~~~~~ 1021 (1101)
|||++|+++.. |..++||++. |+++.+..
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99999998874 7889999984 77776554
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-10 Score=116.29 Aligned_cols=349 Identities=16% Similarity=0.248 Sum_probs=213.8
Q ss_pred cCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc-----eEEEecCcc------------cCeEEEeeeecCCccEEE
Q 001318 452 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHE------------APVYSVCPHHKENIQFIF 514 (1101)
Q Consensus 452 ~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~v~~~~~~~~~~l~ 514 (1101)
.+-|.++.|..+|. +|++|..+|.|.++.-.... ....++.|. ..|+.+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 46789999999999 89999999999999743222 223444443 347778888888888888
Q ss_pred EEecCCcEEEEecCCCCcee-----eecCCCCceeEEEEcc----------CCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 515 STALDGKIKAWLYDNLGSRV-----DYEAPGRWCTTMAYSA----------DGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 515 s~~~dg~i~~wd~~~~~~~~-----~~~~~~~~v~~~~~s~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
..+.|.+|++|.+....... ........++++.... ..++++...+.--+..+.++.|...++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 89999999999887644332 1111222333332211 12255666666788899999999988886
Q ss_pred eCCCcEEEEECCCCc-ee--EEEcCCC---CCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCcccccccccccccccc
Q 001318 580 GDDFSIKFWDMDSVQ-LL--TSIDADG---GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 652 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~-~~--~~~~~~~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 652 (1101)
. |=.|.+|+++--. .. ..++.+. -...|++..|+| ..++++-.++.|+|++-|++....+-..
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h--------- 252 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH--------- 252 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch---------
Confidence 5 6689999986432 11 2222111 112467888999 4567777788899999998754111100
Q ss_pred ccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccccc
Q 001318 653 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 732 (1101)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 732 (1101)
-+++...
T Consensus 253 ------------------------------------------------------------sKlfEep------------- 259 (433)
T KOG1354|consen 253 ------------------------------------------------------------SKLFEEP------------- 259 (433)
T ss_pred ------------------------------------------------------------hhhhccc-------------
Confidence 0000000
Q ss_pred CccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEE
Q 001318 733 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 812 (1101)
Q Consensus 733 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~ 812 (1101)
. .|..+-+ +. +--..|..+.
T Consensus 260 -e------------dp~~rsf---------------------------------------------fs--eiIsSISDvK 279 (433)
T KOG1354|consen 260 -E------------DPSSRSF---------------------------------------------FS--EIISSISDVK 279 (433)
T ss_pred -c------------CCcchhh---------------------------------------------HH--HHhhhhhceE
Confidence 0 0000000 00 0134577889
Q ss_pred EecCCCEEEEEeCCeEEEEEC-CCCceeeEecCCC------------CC---eEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 813 LSKNDSYVMSASGGKISLFNM-MTFKTMATFMPPP------------PA---ATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 813 ~s~dg~~la~~sdg~i~vwd~-~~~~~~~~~~~~~------------~~---i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
|+++|+|+++-+--+|++||+ ...+.+.+++-|. .. -..++|+. ++.++++|+....+++|++
T Consensus 280 Fs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 280 FSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred EccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecC
Confidence 999999999887789999999 4556666665553 12 24678998 8889999999999999997
Q ss_pred ecceEe-eeecCcccC--eeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 877 RVDEVK-SKLKGHSKR--ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 877 ~~~~~~-~~l~~h~~~--V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
..|... .++...... ...+ ..-+.+.+++......+|-.. +... ..+...+|+|....
T Consensus 359 ~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~---------ldf~-------kkilh~aWhp~en~ 419 (433)
T KOG1354|consen 359 ARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA---------LDFR-------KKILHTAWHPKENS 419 (433)
T ss_pred CCCcceeecccccccCCccccc---ccceeeecCCCccccccccch---------hhhh-------hHHHhhccCCccce
Confidence 665422 222222221 1111 112334444444332222110 0000 14577899999999
Q ss_pred EEEEeCCeEEEE
Q 001318 954 FLVVHETQLAIF 965 (1101)
Q Consensus 954 la~~~d~~v~vw 965 (1101)
+|++.-+.+.+|
T Consensus 420 ia~aatnnlyif 431 (433)
T KOG1354|consen 420 IAVAATNNLYIF 431 (433)
T ss_pred eeeeecCceEEe
Confidence 999766667665
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-10 Score=133.26 Aligned_cols=232 Identities=11% Similarity=0.047 Sum_probs=143.7
Q ss_pred CCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEec--CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccC
Q 001318 328 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 405 (1101)
Q Consensus 328 ~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1101)
+|..+........+..|...+.+.+|||||++|+.+... +..|.+||+.+++... +..
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~ 243 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGN 243 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eec
Confidence 333333334444555788899999999999975554432 4689999998886532 345
Q ss_pred CCCCeEEEEEecCCCeEEE-EEcCCe--EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEec-CC--CcEE
Q 001318 406 PGVSVNRVIWSPDGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DD--KTIK 479 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las-~~~d~~--i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d--~~i~ 479 (1101)
+.+.+.+.+|||||+.|+. .+.++. |.+||+.+++..+ +..+.......+|+|||+. ++..+ .+ ..|+
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy 317 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR----LTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLY 317 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE----ccCCCCccCceeEcCCCCE--EEEEECCCCCCeEE
Confidence 5667889999999998864 455554 7778988876433 5556667788999999995 44333 33 3688
Q ss_pred EEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC---CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEE
Q 001318 480 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 480 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
+||+.+++.. .+..+.+.+....|+ ++|+.|+..+.+ ..|.+||+..... ..+.. ...+...
T Consensus 318 ~~d~~g~~~~-~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p---------- 382 (435)
T PRK05137 318 VMNADGSNPR-RISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGP---------- 382 (435)
T ss_pred EEECCCCCeE-EeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCC----------
Confidence 8897766543 343344455556664 566777766543 3577777654322 22211 1123333
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDD------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
.|+|||+.++..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 383 -----------~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 383 -----------TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred -----------eECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 455555566554332 3688888866544 3443221 355667776
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=133.21 Aligned_cols=215 Identities=13% Similarity=0.150 Sum_probs=137.5
Q ss_pred CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc---CCeEEEEEccCCceeee
Q 001318 368 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 444 (1101)
Q Consensus 368 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 444 (1101)
..|.+||....... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46889998654332 24566778999999999999998874 3479999999886432
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCC--cEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEec-CCc
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK 521 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg~ 521 (1101)
+..+.+...+.+|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+ ++|+.|+.++. +|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence 3334455668899999996 344555554 599999988875 4455555555566774 56677776654 455
Q ss_pred --EEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcee
Q 001318 522 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 596 (1101)
Q Consensus 522 --i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 596 (1101)
|.++|+.+++. ..+....... ...+|+|+|+.++..+.+ ..|++||+.+++..
T Consensus 316 ~~iy~~dl~~g~~-~~lt~~g~~~---------------------~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 316 PQIYRVAASGGSA-ERLTFQGNYN---------------------ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred ceEEEEECCCCCe-EEeecCCCCc---------------------cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 55555544332 1111111111 234566666677665433 26999999888755
Q ss_pred EEEcCCCCCCCcCeEEEccCCCEEEEEeCC---CcEEEEEecC
Q 001318 597 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD 636 (1101)
Q Consensus 597 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~ 636 (1101)
.+. +.. ......|+|||++++..+.+ +.|.+++...
T Consensus 374 -~Lt-~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 374 -TLT-PGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -ECC-CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 333 221 24567999999988877653 3466666643
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-09 Score=112.08 Aligned_cols=323 Identities=11% Similarity=0.128 Sum_probs=184.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCC---------------cEEE
Q 001318 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN---------------GIKI 631 (1101)
Q Consensus 567 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------------~i~i 631 (1101)
++++|.|.+|++.. -..|.+|.-..+..+..+... .|..+.|+|.++||.+-+..+ .+.+
T Consensus 38 ~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~~~----~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v 112 (561)
T COG5354 38 VSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFRHP----DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV 112 (561)
T ss_pred eeecCcchheehhh-ccceEEccccchhheeeeecC----CceecccCcccceeeeeccCCccChhhccCCccccCceeE
Confidence 33444444555543 346889988877766666522 488899999999999876543 4899
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 711 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 711 (1101)
||+.+| .++..+......... -....++.+..+.+-. ...
T Consensus 113 wd~~sg-~iv~sf~~~~q~~~~--------------------------------------Wp~~k~s~~D~y~ARv-v~~ 152 (561)
T COG5354 113 WDIASG-MIVFSFNGISQPYLG--------------------------------------WPVLKFSIDDKYVARV-VGS 152 (561)
T ss_pred EeccCc-eeEeeccccCCcccc--------------------------------------cceeeeeecchhhhhh-ccC
Confidence 999988 666655443322000 0122333344444322 234
Q ss_pred cceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCC
Q 001318 712 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 791 (1101)
Q Consensus 712 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~ 791 (1101)
.+.++++...-.......+ ....|....++|.++ ...+..|.. +.
T Consensus 153 sl~i~e~t~n~~~~p~~~l------r~~gi~dFsisP~~n-------~~~la~~tP----------------------Ek 197 (561)
T COG5354 153 SLYIHEITDNIEEHPFKNL------RPVGILDFSISPEGN-------HDELAYWTP----------------------EK 197 (561)
T ss_pred eEEEEecCCccccCchhhc------cccceeeEEecCCCC-------CceEEEEcc----------------------cc
Confidence 5677775322222222221 234566666666552 111222211 10
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe-----
Q 001318 792 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----- 866 (1101)
Q Consensus 792 g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~----- 866 (1101)
+ +..+++++|.+..+..+.+-.-..-.-..+.|.+ .|++|..--
T Consensus 198 ~------------------------------~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~k 246 (561)
T COG5354 198 L------------------------------NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTK 246 (561)
T ss_pred C------------------------------CCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeee
Confidence 0 0134455555544333332211111223344444 333332210
Q ss_pred ------ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEe--CCCceEEEeCCCcccccceeeecCCCCCCC
Q 001318 867 ------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 938 (1101)
Q Consensus 867 ------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
....++|+++....+.-. .+-.++|...+|.|+++.+++.+ .+.++.++|+++.- ....+..
T Consensus 247 snKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl-----~~~~Pe~---- 316 (561)
T COG5354 247 SNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL-----RFYFPEQ---- 316 (561)
T ss_pred cccceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccce-----EEecCCc----
Confidence 135788888874443333 25678999999999988776554 68889999998731 1222222
Q ss_pred CCCCeEEEEcCCCcEEEE-EeC---CeEEEEEcCCceeee-eccCCCCCCCeeEEEEcCCCCEEEEEE------cCCeEE
Q 001318 939 AQSDTRVQFHQDQIHFLV-VHE---TQLAIFETTKLECVK-QWVPRESSAPITHATFSCDSQLVYACF------LDATVC 1007 (1101)
Q Consensus 939 ~~~v~~~~~s~dg~~la~-~~d---~~v~vwd~~~~~~~~-~~~~~~h~~~i~~l~~spdg~~l~s~s------~dg~v~ 1007 (1101)
.-..+.|||.+++++. +.+ |.+.+||........ .+. ....+-+.|||||+++.+.. .|..|.
T Consensus 317 --~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~ 390 (561)
T COG5354 317 --KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIK 390 (561)
T ss_pred --ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceE
Confidence 2256889999999988 443 679999987654443 444 23455668999999988765 478899
Q ss_pred EEEcCCcee
Q 001318 1008 VFSAANLKL 1016 (1101)
Q Consensus 1008 vwd~~~~~~ 1016 (1101)
|||+.....
T Consensus 391 l~~v~g~~~ 399 (561)
T COG5354 391 LWDVYGAKV 399 (561)
T ss_pred EEEecCchh
Confidence 999875443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.1e-11 Score=116.59 Aligned_cols=112 Identities=20% Similarity=0.327 Sum_probs=92.0
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec---cCeEEEEEee
Q 001318 804 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR 877 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~ 877 (1101)
..++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...++.+.|+| +|++|++|+. .|.|.+||+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 345699999999999887653 5789999996 66666664 56788999999 8999999874 4679999999
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeC------CCceEEEeCCCc
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------DSQLCVWSSDGW 921 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------D~~v~iwd~~~~ 921 (1101)
+.+.+.... |. .++.++|||||++|++++. |..++||++.+.
T Consensus 134 ~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 134 KKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 988887765 33 4789999999999998874 788999999763
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-10 Score=115.93 Aligned_cols=255 Identities=12% Similarity=0.082 Sum_probs=176.4
Q ss_pred cCCCCcEEEEEecCCCeEEEEEe-cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
.....|+.++|--|++.=+..+. .|..+............. +|++. ........|..++.. ...
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~ 117 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGT 117 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCE
Confidence 34567888888877664333333 566666666655544332 12221 233445566666654 456
Q ss_pred EEEEEcCCeEEEEEccCCceee-eeeeeccccCCeeEEEEcCCCCeEEEEEecCC--CcEEEEeCCCCceEEEecC----
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEG---- 494 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~---- 494 (1101)
|++|-.+|.+.+|..+.+..-. ....+.- ...+..|.-++...+ ++++||.. ..++|||++..+.+.+-+.
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 7888899999999998543110 1112322 356778888877775 67779988 8899999998866654332
Q ss_pred ---ccc--CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCc-eeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 495 ---HEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 495 ---h~~--~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
-.- .++++.|.+......|++++.-+.+++||.+.+.. ...+..... .+.++.
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~---------------------~is~~~ 254 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN---------------------PISSTG 254 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC---------------------cceeee
Confidence 112 34556666554467899999999999999986432 223333333 555666
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEE-EcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..|+++++++|..-|.+..||++.++.... +++. .+.++++..+|.++++++++-|..|||+|+.+.
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 667777899999999999999999988776 5544 447999999999999999999999999999985
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.9e-10 Score=127.32 Aligned_cols=205 Identities=13% Similarity=0.110 Sum_probs=138.6
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc---CeEEEEEeecceEeeeecCcccCeeEEEEcCCCC
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 902 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 902 (1101)
..|.++|... ...+.+..+...+...+|+| |+++||.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 3588888754 33455555666788999999 88888887644 489999998875433 334556677899999998
Q ss_pred EEEE-EeCCC--ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeC----CeEEEEEcCCceeeee
Q 001318 903 VLVS-SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQ 975 (1101)
Q Consensus 903 ~l~s-~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d----~~v~vwd~~~~~~~~~ 975 (1101)
.|+. .+.++ .|.+|++.++.... ... +. .......|+|||++|+...+ ..|.++|+.+++....
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~-----l~~-~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR-----LTN-GP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE-----CCC-CC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 7764 44444 58888988754211 111 11 12356789999999887422 2688888887765432
Q ss_pred ccCCCCCCCeeEEEEcCCCCEEEEEEcCC---eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 976 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 976 ~~~~~h~~~i~~l~~spdg~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
. .+...+..+.|+|||++|+.++.++ .|.+||+.++....... + .. .. ...|+| |++.|+.
T Consensus 318 ~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-------~--~~-~~--~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 318 T---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-------T--GL-DE--SPSFAP-NGRMILY 381 (417)
T ss_pred e---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-------C--CC-CC--CceECC-CCCEEEE
Confidence 2 2345677889999999999888776 79999998865432211 1 01 11 467999 6777777
Q ss_pred EecCCc
Q 001318 1053 GLSDGG 1058 (1101)
Q Consensus 1053 ~~~dg~ 1058 (1101)
.+.++.
T Consensus 382 ~~~~~~ 387 (417)
T TIGR02800 382 ATTRGG 387 (417)
T ss_pred EEeCCC
Confidence 666653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-09 Score=112.22 Aligned_cols=237 Identities=9% Similarity=0.063 Sum_probs=149.8
Q ss_pred EecCCCEEEEEeC-----------CeEEEEECCCCceeeEecCCCC-------CeEEEEEecCCCcEEEEEe-c-cCeEE
Q 001318 813 LSKNDSYVMSASG-----------GKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ 872 (1101)
Q Consensus 813 ~s~dg~~la~~sd-----------g~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg~-~-dg~v~ 872 (1101)
+|||++.++++.. +.|.+||..+++.+.++.-... ....++++| ||++|++.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 9999998887643 6799999999999988864322 234789999 888888765 4 78999
Q ss_pred EEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCC-eEEEEcC-C
Q 001318 873 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-TRVQFHQ-D 950 (1101)
Q Consensus 873 vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~-d 950 (1101)
|.|+.+++.+.++.--. ...-...+.+. .++ -+.||......+.............+.+... .+ ..-.|++ |
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~---~v~~rP~~~~~d 205 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTANDT-FFM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE---YLINHPAYSNKS 205 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecCCc-cEE-EeecCceEEEEecCCCceEEeeeeeecCCcc---ccccCCceEcCC
Confidence 99999999988776421 11112222221 111 1234443333332211111111122111000 00 0014556 8
Q ss_pred CcEEEEEeCCeEEEEEcCCc-----eeeeeccCCC-----CCCCeeEEEEcCCCCEEEEEEc----------CCeEEEEE
Q 001318 951 QIHFLVVHETQLAIFETTKL-----ECVKQWVPRE-----SSAPITHATFSCDSQLVYACFL----------DATVCVFS 1010 (1101)
Q Consensus 951 g~~la~~~d~~v~vwd~~~~-----~~~~~~~~~~-----h~~~i~~l~~spdg~~l~s~s~----------dg~v~vwd 1010 (1101)
|+++.++.+|.|.+.|+.+. .....+.... ..+.+.-+++++|++.|++... .+.|.++|
T Consensus 206 g~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 206 GRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred CcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence 99999988899999995433 2222221110 1334445999999999887532 24799999
Q ss_pred cCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-cCCcEEEEeccCCC
Q 001318 1011 AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~-~dg~v~vW~~~~~~ 1068 (1101)
..+++.+.++.. | ..+..++++| |++ +|++.. .++.|.+.|+.+++
T Consensus 286 ~~t~kvi~~i~v------G-----~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 286 AKTGKRLRKIEL------G-----HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCCeEEEEEeC------C-----CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999999998772 1 1233799999 567 766555 68899999999987
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-09 Score=105.38 Aligned_cols=257 Identities=12% Similarity=0.187 Sum_probs=174.0
Q ss_pred CCCCeeEEEEecCCCEEEEEe----CCeEEEEECCC--Cceee--EecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEE
Q 001318 804 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 874 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s----dg~i~vwd~~~--~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vw 874 (1101)
....++-++++|+.++|.++. +|.|.-|.+.. |+... ........-+.+++++ ++++|+++. ..|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 567788999999999998875 36677777764 44322 2222233448899999 898888886 45799999
Q ss_pred Eeec-ceEeee--ecCcccC----------eeEEEEcCCCCEEEEEe--CCCceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 875 NVRV-DEVKSK--LKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 875 d~~~-~~~~~~--l~~h~~~----------V~~l~~s~dg~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
-++. |.+... +..|.+. +-...|.|++++|++.+ .|+ |.+|+++.|............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 433221 2235554 78889999999999875 454 9999999877655555555444
Q ss_pred CCCeEEEEcCCCcEEEE-E-eCCeEEEEEcCCc--e--eeeecc--CCC--CCCCeeEEEEcCCCCEEEEEEc-CCeEEE
Q 001318 940 QSDTRVQFHQDQIHFLV-V-HETQLAIFETTKL--E--CVKQWV--PRE--SSAPITHATFSCDSQLVYACFL-DATVCV 1008 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~-~-~d~~v~vwd~~~~--~--~~~~~~--~~~--h~~~i~~l~~spdg~~l~s~s~-dg~v~v 1008 (1101)
...+.++|+|++++..+ . -+++|.+|..+.. + .++.+. +.. -.....+|.+++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 46699999999998887 3 6789999998773 2 122111 111 1456788999999999987652 236888
Q ss_pred EEcC--CceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC-CcEEEEeccCCCccccCCCC
Q 001318 1009 FSAA--NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESEGKWGVPPP 1076 (1101)
Q Consensus 1009 wd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d-g~v~vW~~~~~~~~~~~~~~ 1076 (1101)
|.+. +|++...-. .. .+...|-...|.+ ++++|+++..| .+|.++.+....+.+.....
T Consensus 271 f~V~~~~g~L~~~~~---~~-----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 271 FSVDPDGGKLELVGI---TP-----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEcCCCCEEEEEEE---ec-----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 8764 343322111 11 2224566789998 56777766665 57999999877766665444
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-10 Score=113.09 Aligned_cols=216 Identities=13% Similarity=0.183 Sum_probs=142.8
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEc-cCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
.++||.+.|++...-|-..-+.+.+.|.+++||-- +.++....+ ...-..+++++.+.++.. .|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence 47899999999999998888999999999999954 444433221 112356789999999888 6888888999988
Q ss_pred EeCC----CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEE
Q 001318 481 WDAT----NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 481 wd~~----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
+.+. ....++....|...|..+.|+..+ ..+++.+.|..+. |......... ++ +.+
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~-~hc~e~~~~l-----g~------------Y~~ 154 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFA-WHCTESGNRL-----GG------------YNF 154 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceE-EEeeccCCcc-----cc------------eEe
Confidence 8654 334456667899999999886544 6899999988764 5333221111 00 000
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
..... ...+.- .+...|...|.|.+-.+. .-.++.++.++ ...+.+++|.+..+.|.+|..|..+.+||+
T Consensus 155 ~~~~t----~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 155 ETPAS----ALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred eccCC----CCceee--EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEec
Confidence 00000 000000 034445555555555443 33455666544 558999999999999999999999999999
Q ss_pred cCccccccccccccc
Q 001318 635 SDGIRLLRTFENLAY 649 (1101)
Q Consensus 635 ~~~~~~~~~~~~~~~ 649 (1101)
.........+.+|..
T Consensus 227 gg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 227 GGRKGTAYELQGHND 241 (404)
T ss_pred cCCcceeeeeccchh
Confidence 766444444444444
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-09 Score=123.67 Aligned_cols=227 Identities=10% Similarity=0.080 Sum_probs=132.6
Q ss_pred cccCCCCcEEEEEecCCCeE--EEEEecCC--cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 341 TLNQGSSPMSMDFHPVQQTL--LLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~l--latg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
+......+.+-+|||||+.+ +++...+| .|.+.++.+++... +....+.....+||
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wS 239 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFS 239 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEEC
Confidence 33455667788999999863 33544444 58888888776543 22234455678999
Q ss_pred cCCCeEEEEEc-----CCeEEEEEccCCc--eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE--eCCC-C
Q 001318 417 PDGSLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW--DATN-G 486 (1101)
Q Consensus 417 pdg~~las~~~-----d~~i~iwd~~~~~--~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw--d~~~-~ 486 (1101)
|||++||..+. |-.+.+|++.++. ..+.. ..++.......+|+|||+. ++.+...++...+| ++.. +
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccc
Confidence 99999987653 2234557776532 12211 2223344567899999995 23334456655555 4432 3
Q ss_pred ceEEEecCcccCeEEEeeeecCCccEEEEEecC---CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCc
Q 001318 487 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563 (1101)
Q Consensus 487 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 563 (1101)
.....+..+...+....|+ +||+.|+..+.+ ..|.+||+.+++... +......+....|+|||
T Consensus 317 ~~~~~lt~~~~~~~~p~wS--PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG----------- 382 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWS--PDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDS----------- 382 (428)
T ss_pred cceEEeccCCCCccceeEC--CCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCC-----------
Confidence 3344455454556667774 556777766543 368899988765432 22112233344455544
Q ss_pred eeEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC
Q 001318 564 LGVVQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 617 (1101)
Q Consensus 564 ~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 617 (1101)
+.|+... ....|++||+.+++........+ .+...+|+|-.
T Consensus 383 ----------~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~~ 426 (428)
T PRK01029 383 ----------LHLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAFP 426 (428)
T ss_pred ----------CEEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCCC
Confidence 4555432 24578999998877655543222 35567888743
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-09 Score=124.40 Aligned_cols=226 Identities=10% Similarity=0.069 Sum_probs=135.0
Q ss_pred cceeecccCCCCcEEEEEecCCCeEEEEEecC--CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEE
Q 001318 336 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 413 (1101)
Q Consensus 336 ~~~~~~~~h~~~v~~~~~spdg~~llatg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 413 (1101)
.....+..+...+...+|||||++|+.+...+ ..|.+||+.+++... +....+.+...
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~ 248 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAP 248 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCe
Confidence 33445556788899999999999855555443 368999998886543 22233445679
Q ss_pred EEecCCCeEEEE-EcCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC--cEEEEeCCCCce
Q 001318 414 IWSPDGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAK 488 (1101)
Q Consensus 414 ~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~ 488 (1101)
+|||||++|+.. +.++ .|.+||+.+++..+ +..+........|+|||+.+ +++...++ .|+++|+.+++.
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~i-~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRTL-YFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeEE----cccCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECCCCCE
Confidence 999999998854 4444 68888999876432 44556667788999999963 33333333 578888888775
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEec-CC--cEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
..... .........| +++|+.++..+. ++ .|.+||+.+++... +... .....
T Consensus 324 ~~lt~-~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~~~~~-------------------- 378 (430)
T PRK00178 324 ERVTF-VGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-SLDES-------------------- 378 (430)
T ss_pred EEeec-CCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-CCCCC--------------------
Confidence 43221 1122233455 455667766654 33 47778887654322 1111 11112
Q ss_pred EEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 566 VVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
..|+|+|+.++..+.+ ..|+++++.. .....+.... ..+...+|+|
T Consensus 379 -p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~ 427 (430)
T PRK00178 379 -PSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP 427 (430)
T ss_pred -ceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence 2455565666665432 3477777743 3333443222 2355667765
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-09 Score=124.06 Aligned_cols=222 Identities=13% Similarity=0.088 Sum_probs=131.1
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCC--cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
..+..+...+.+..|||||++|+.+...++ .|.+||+.+++... +....+.....+||
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wS 270 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFS 270 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeEC
Confidence 344556778999999999998655554444 58889998876532 11112234578999
Q ss_pred cCCCeEEEE-EcCCe--EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC--cEEEEeCCCCceEEE
Q 001318 417 PDGSLFGVA-YSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYI 491 (1101)
Q Consensus 417 pdg~~las~-~~d~~--i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~ 491 (1101)
|||+.|+.. +.++. |.+||+.+++..+ +..+.......+|+|||+. ++++...++ .|+++|+.+++....
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~----lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATKALTR----ITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCCCeEE----CccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEEE
Confidence 999988764 55664 7788888876432 4455566788999999996 333443344 467778877765432
Q ss_pred -ecCcccCeEEEeeeecCCccEEEEEec-CCc--EEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 492 -FEGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 492 -~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
+.++ .....+| +++|++|+..+. ++. |.++|+.++... .+... ..... .
T Consensus 346 t~~g~--~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~---------------------p 398 (448)
T PRK04792 346 TFEGE--QNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDES---------------------P 398 (448)
T ss_pred ecCCC--CCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCC---------------------c
Confidence 2322 2233466 455667666554 444 444565554322 11111 00111 2
Q ss_pred EEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 568 QFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
.|+|+|+.++..+. ++ .+++++. +|.....+..... .+...+|+|
T Consensus 399 s~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g--~~~~p~Wsp 446 (448)
T PRK04792 399 SVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG--EVKSPAWSP 446 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--CcCCCccCC
Confidence 35566666655443 33 3777787 4555555553322 456677876
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.8e-10 Score=109.79 Aligned_cols=277 Identities=14% Similarity=0.223 Sum_probs=172.6
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCccccccccc--CCCCCeEEEEEecCCC
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK--DPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~spdg~ 420 (1101)
...+-|.++.|..+|.+ ||||..+|.|.++.-+.... .+++.+..- .+.......++ .-...|..+.|.+++.
T Consensus 23 teadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~---~ey~~~t~f-qshepEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK---GEYNFQTEF-QSHEPEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred chhcceeeEEeecccce-EeecCCCCeEEEeecccccc---cceeeeeee-eccCcccchhhhhhhhhhhhhceecCCCC
Confidence 34577999999999996 99999999999997543322 011111000 00000010111 1235788999999655
Q ss_pred --eEEEEEcCCeEEEEEccCCceee--------------------------------eeee-eccccCCeeEEEEcCCCC
Q 001318 421 --LFGVAYSRHIVQIYSYHGGDEVR--------------------------------QHLE-IDAHVGGVNDIAFSHPNK 465 (1101)
Q Consensus 421 --~las~~~d~~i~iwd~~~~~~~~--------------------------------~~~~-l~~h~~~V~~~~~s~d~~ 465 (1101)
.++..+.|.+|++|.+....... +... -.+|.--|+++.++.|..
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 56677889999999875321100 0001 135777899999999988
Q ss_pred eEEEEEecCCCcEEEEeCCCCceEE---Eec-----CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCce----
Q 001318 466 QLCVITCGDDKTIKVWDATNGAKQY---IFE-----GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---- 533 (1101)
Q Consensus 466 ~~~l~s~~~d~~i~iwd~~~~~~~~---~~~-----~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---- 533 (1101)
.++++ +|=.|.+|+++--..-. .++ .-+..|++..|+|... ..++-.+..|+|++-|++.....
T Consensus 178 --t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 178 --TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred --eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchh
Confidence 45554 57889999987432221 222 2344578888888765 46666677899999999853221
Q ss_pred eeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeEEEcCCCCC-------
Q 001318 534 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGL------- 605 (1101)
Q Consensus 534 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~------- 605 (1101)
..+..+..+.. +.+-..--..+.-+.|+.+|+++++-+. -+|++||+ ...+++.+++.|...
T Consensus 254 KlfEepedp~~---------rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 254 KLFEEPEDPSS---------RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hhhccccCCcc---------hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence 11111111111 0011111124455677777777777443 58999999 556777777654321
Q ss_pred ---CCc---CeEEEccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 606 ---PAS---PRIRFNKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 606 ---~~v---~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
..| ..++|+.++.++++|+..+.+++++...|.
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 112 358899999999999999999999977663
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-09 Score=121.40 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=123.9
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcC---CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC--c
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 477 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~ 477 (1101)
+..+...+...+|||||++||.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566789999999999999987654 479999999876433 3345566778999999986 344555444 5
Q ss_pred EEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEec-CC--cEEEEecCCCCceeeecCCCCceeEEEEccCCce
Q 001318 478 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 554 (1101)
Q Consensus 478 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 554 (1101)
|++||+.++... .+..+........|+ ++|+.|+..+. ++ .|.+||+.+.+. ..+......
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~------------ 323 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY------------ 323 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC------------
Confidence 899998877653 344444444455664 56677766554 33 466666654332 122212222
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001318 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 627 (1101)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 627 (1101)
.....|+|++++++.++.++ .|.+||+.++... .+.... ......|+|||++|+..+.++
T Consensus 324 ---------~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 324 ---------NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ---------ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence 23345666667777777665 7899999876543 332221 234578999999988877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.6e-09 Score=110.11 Aligned_cols=294 Identities=12% Similarity=0.155 Sum_probs=181.6
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..|.-+.|||+.++|++-+..-.+.-|+= .....+.+||+.+|.+.+...........-.-..||.|++
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d-----------~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDD-----------NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK 318 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCccc-----------CCCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence 34667778888888877665432222210 0001234666677765544322101122223478999999
Q ss_pred EEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc-----CeEEEEEeecceEeeeecCcccCee
Q 001318 819 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDEVKSKLKGHSKRIT 893 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~~~~~l~~h~~~V~ 893 (1101)
|+|--....|.||+..+..++..-.-....|....|+| .+++||.=... ..+.+-.+.+++.+++-.-|.-.=.
T Consensus 319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc 397 (698)
T KOG2314|consen 319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC 397 (698)
T ss_pred eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence 99988888999999887554433222356788999999 88888865422 3677777777777776655544334
Q ss_pred EEEEcCCCCEEEEEeC----------CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE--Ee--C
Q 001318 894 GLAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VH--E 959 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~--d 959 (1101)
.+-|-.+|.+|+.--. =..+.|+.+..... ....+.+. ..|...+|-|.|..+++ +. .
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~velk-------e~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVELK-------ESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeeecc-------hheeeeeeccCCCeEEEEEccccc
Confidence 4677788888875321 12345555554221 11111111 36788999999998888 32 3
Q ss_pred CeEEEEEcCC-c---eeeeeccCCCCCCCeeEEEEcCCCCEEEEEE---cCCeEEEEEcCCceeeeecCCCcccCCCCCC
Q 001318 960 TQLAIFETTK-L---ECVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSS 1032 (1101)
Q Consensus 960 ~~v~vwd~~~-~---~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1032 (1101)
.++.+|.+++ . +.+..+. ....+.+.|||.|++++.+. ..|.+..+|..-......-. +.+
T Consensus 470 ~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-----~eh--- 537 (698)
T KOG2314|consen 470 NTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-----PEH--- 537 (698)
T ss_pred cceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-----ccc---
Confidence 4788998874 2 2233332 45678899999999988665 46889999987533322111 111
Q ss_pred CCccceEEEEeCCCCCEEEEEec------CCcEEEEeccCC
Q 001318 1033 SNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLES 1067 (1101)
Q Consensus 1033 ~~v~~~~i~~~~~d~~~l~s~~~------dg~v~vW~~~~~ 1067 (1101)
.....+-|.| .|+|+++++. |..-++|+++..
T Consensus 538 --~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 538 --FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred --cccccceECC-CCCEEEEeeehhhhccccceEEEEeecH
Confidence 1223688999 5899999886 445677777544
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.8e-09 Score=108.88 Aligned_cols=320 Identities=11% Similarity=0.169 Sum_probs=203.0
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC-----------CcEEEEE
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----------NGIKILA 633 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iw~ 633 (1101)
+.+.|+|.|.+|++--.. -|.+|--.+...++.+.+. .|.-+.|||..+||++-+.. ..++|||
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp----~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHP----GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCC----CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 446667777777776544 4789987777777777532 37789999999999986532 4577788
Q ss_pred ecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcc
Q 001318 634 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 713 (1101)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 713 (1101)
+.+| ...+.+... . +..
T Consensus 289 I~tG-~lkrsF~~~------------------~--------------------------------------------~~~ 305 (698)
T KOG2314|consen 289 IATG-LLKRSFPVI------------------K--------------------------------------------SPY 305 (698)
T ss_pred cccc-chhcceecc------------------C--------------------------------------------CCc
Confidence 7777 444333210 0 000
Q ss_pred eeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcc
Q 001318 714 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 793 (1101)
Q Consensus 714 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~ 793 (1101)
..-.-+.||.|+++++....+ .|.||+...- .+.| ++
T Consensus 306 -------------------------~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf--------------~lld---~K 342 (698)
T KOG2314|consen 306 -------------------------LKWPIFRWSHDDKYFARMTGN-SISIYETPSF--------------MLLD---KK 342 (698)
T ss_pred -------------------------cccceEEeccCCceeEEeccc-eEEEEecCce--------------eeec---cc
Confidence 111235789999988877764 6777765210 1111 11
Q ss_pred ccccccCCCCCCCCeeEEEEecCCCEEEEEe---C---CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe-
Q 001318 794 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM- 866 (1101)
Q Consensus 794 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s---d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~- 866 (1101)
.+ .-..|....|+|.+..||.-. + ..+.+..+.+++.+++-+-+.-.=..+.|-. .|.+|+.--
T Consensus 343 sl--------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvd 413 (698)
T KOG2314|consen 343 SL--------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVD 413 (698)
T ss_pred cc--------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEE
Confidence 11 234578889999999999765 2 3588888888888877665554445566766 677776532
Q ss_pred ---------ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeC---CCceEEEeCCCcccccceeeecCCC
Q 001318 867 ---------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTG 934 (1101)
Q Consensus 867 ---------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~ 934 (1101)
.-..+.|+.+......-..-.-...|...+|-|.|..+++-+. -.++.+|.+++.. ....++..+..
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-~~~~lVk~~dk 492 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-KKPSLVKELDK 492 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-Cchhhhhhhcc
Confidence 1123445555443322222224567889999999988776554 3578999988522 22233333332
Q ss_pred CCCCCCCCeEEEEcCCCcEEEEE----eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEc------CC
Q 001318 935 RTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL------DA 1004 (1101)
Q Consensus 935 ~~~~~~~v~~~~~s~dg~~la~~----~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~------dg 1004 (1101)
. ....+.|+|.|++++++ ..|.+..+|+.-..+..+-.+ .| ...+.+.|.|.|+|+++++. |.
T Consensus 493 ~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-eh-~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 493 K-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-EH-FAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred c-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-cc-cccccceECCCCCEEEEeeehhhhcccc
Confidence 2 34789999999999873 468899999985444333221 22 35678899999999999885 44
Q ss_pred eEEEEEcC
Q 001318 1005 TVCVFSAA 1012 (1101)
Q Consensus 1005 ~v~vwd~~ 1012 (1101)
--++|++.
T Consensus 566 GYri~tfq 573 (698)
T KOG2314|consen 566 GYRIFTFQ 573 (698)
T ss_pred ceEEEEee
Confidence 46667765
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-09 Score=114.15 Aligned_cols=188 Identities=16% Similarity=0.293 Sum_probs=148.1
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCceeeEecCC---CCCeEEEEEe------c-------------CCCcEEEEEeccCeE
Q 001318 815 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI 871 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~s------p-------------~d~~~lasg~~dg~v 871 (1101)
|-..++|... ||.+++||...++....|... .+..++..|. | .|..+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456788877 899999999998887777542 3344444442 1 144588889999999
Q ss_pred EEEEeecceEeeeec--CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 872 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 872 ~vwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
.+|++..++...++. .|.+.|+++.++.+-..|.|++.|+.+..|+..... ......+.. ..+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~---~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQK---PLVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCC---CccceEEEcC
Confidence 999999999888885 699999999999999999999999999999998744 233333333 3689999999
Q ss_pred CCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCC-----CCEEEEE-EcCCeEEEEEcCC
Q 001318 950 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVYAC-FLDATVCVFSAAN 1013 (1101)
Q Consensus 950 dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spd-----g~~l~s~-s~dg~v~vwd~~~ 1013 (1101)
||+.++++ .++|++||+++++.+..|. ||.++|.+++|.-+ |.+++++ ..+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988874 4789999999999999998 99999999999887 6776544 3455577786543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.8e-09 Score=117.31 Aligned_cols=210 Identities=10% Similarity=0.075 Sum_probs=132.0
Q ss_pred eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec-cC--eEEEEEeecceEeeeecCcccCeeEEEEcCCCCE
Q 001318 827 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV 903 (1101)
Q Consensus 827 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 903 (1101)
.|.++|..... .+.+..+...+....||| ||+.|+..+. ++ .|++||+.+++... +....+.....+|||||+.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence 57777875543 345555667888999999 8888877653 33 68899998776422 2222333457899999998
Q ss_pred EEE-EeCCCc--eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe--C--CeEEEEEcCCceeeeec
Q 001318 904 LVS-SGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--E--TQLAIFETTKLECVKQW 976 (1101)
Q Consensus 904 l~s-~s~D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--d--~~v~vwd~~~~~~~~~~ 976 (1101)
|+. .+.++. |.+||+.+++.. ..... . ......+|+|||++++... + ..|.++|+.+++.....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~-----~lt~~-~---~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALT-----RITRH-R---AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeE-----ECccC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence 875 455665 777788775421 11111 1 2356789999999988743 2 35777788877654432
Q ss_pred cCCCCCCCeeEEEEcCCCCEEEEEEcC-C--eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE
Q 001318 977 VPRESSAPITHATFSCDSQLVYACFLD-A--TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1053 (1101)
Q Consensus 977 ~~~~h~~~i~~l~~spdg~~l~s~s~d-g--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~ 1053 (1101)
. .+ ......+|+|||++|+..+.+ + .|.++|+.+++... +. .+ .... ...|+| ||+.|+..
T Consensus 347 ~-~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt------~~--~~d~---~ps~sp-dG~~I~~~ 410 (448)
T PRK04792 347 F-EG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT------ST--RLDE---SPSVAP-NGTMVIYS 410 (448)
T ss_pred c-CC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc------CC--CCCC---CceECC-CCCEEEEE
Confidence 1 12 223457999999998776553 3 46677888886532 22 01 0001 357999 56766554
Q ss_pred ec-CCc--EEEEec
Q 001318 1054 LS-DGG--VHVFEP 1064 (1101)
Q Consensus 1054 ~~-dg~--v~vW~~ 1064 (1101)
+. +|. ++++++
T Consensus 411 ~~~~g~~~l~~~~~ 424 (448)
T PRK04792 411 TTYQGKQVLAAVSI 424 (448)
T ss_pred EecCCceEEEEEEC
Confidence 44 443 666666
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-09 Score=115.93 Aligned_cols=146 Identities=15% Similarity=0.241 Sum_probs=120.0
Q ss_pred CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001318 749 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK 827 (1101)
Q Consensus 749 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~ 827 (1101)
+...++-+...|.|.+|++.. |.+.. .+...+|.+.|.++-++.+-..|.+++ |+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~----------------------g~it~-~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~ 125 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAG----------------------GEITA-KLSTDKHYGNVNEILDAQRLGCIYSVGADLK 125 (541)
T ss_pred CceEEEeecCCccEEEEEecC----------------------CeEEE-EEecCCCCCcceeeecccccCceEecCCcee
Confidence 444577777789999888632 22221 233345999999999999999999988 899
Q ss_pred EEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCC-----CC
Q 001318 828 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA-----LN 902 (1101)
Q Consensus 828 i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d-----g~ 902 (1101)
+..|+..+++.++.++.....+.+++++| |+.+|++|+ +.|++||+++++.+.+|.||.++|.+++|.-+ |.
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 126 VVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred EEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence 99999999999999998899999999999 899999886 67999999999999999999999999999876 66
Q ss_pred EEEE-EeCCCceEEEeCCC
Q 001318 903 VLVS-SGADSQLCVWSSDG 920 (1101)
Q Consensus 903 ~l~s-~s~D~~v~iwd~~~ 920 (1101)
++.+ +..+.-+.+|-++.
T Consensus 203 ~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeeccccccceeEEEEEc
Confidence 6554 45566688887765
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-08 Score=116.30 Aligned_cols=199 Identities=12% Similarity=0.092 Sum_probs=123.2
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcC---CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC--c
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 477 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~ 477 (1101)
+..+...+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999887644 469999999886433 3333345567999999996 333554444 6
Q ss_pred EEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEec-CC--cEEEEecCCCCceeeecCCCCceeEEEEccCCce
Q 001318 478 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 554 (1101)
Q Consensus 478 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 554 (1101)
|++||+.+++.. .+..+........|+ ++|+.++..+. +| .|.++++.+++... +.....
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~------------- 331 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGN------------- 331 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCC-------------
Confidence 888899887654 454455555556664 55566655543 44 46666665543221 111111
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC-C--c
Q 001318 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDD-F--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G 628 (1101)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~ 628 (1101)
......|+|+|+.++..+.+ + .|.+||+.+++... +... . ......|+|||++++..+.+ + .
T Consensus 332 --------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~--~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 332 --------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-S--LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred --------CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-C--CCCCceECCCCCEEEEEEecCCceE
Confidence 11224566666677665532 2 58889998876533 3221 1 12356899999999877654 3 3
Q ss_pred EEEEEec
Q 001318 629 IKILATS 635 (1101)
Q Consensus 629 i~iw~~~ 635 (1101)
+.+++..
T Consensus 400 l~~~~~~ 406 (430)
T PRK00178 400 LMLVSIN 406 (430)
T ss_pred EEEEECC
Confidence 5555553
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-08 Score=113.97 Aligned_cols=304 Identities=12% Similarity=0.072 Sum_probs=179.8
Q ss_pred EEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEE
Q 001318 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 547 (1101)
Q Consensus 468 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 547 (1101)
.++.++.++.|..+|..+|+.+..+........... .++..++.++.++.+..+|..+++.......... +.+.
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~- 140 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSP- 140 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecC-
Confidence 477888889999999999999877654332222222 2335788888999999999988877765443221 1000
Q ss_pred EccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCC---cCeEEEccCCCEEEEEe
Q 001318 548 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDGCLLAVST 624 (1101)
Q Consensus 548 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~ 624 (1101)
..+ .+..++.++.++.|+.||.++|+.+..+........ ..+... .+..++.+.
T Consensus 141 -------------------p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~ 197 (377)
T TIGR03300 141 -------------------PLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGF 197 (377)
T ss_pred -------------------CEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEEC
Confidence 000 124577788899999999999998887764322100 011122 234677888
Q ss_pred CCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccce
Q 001318 625 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 704 (1101)
Q Consensus 625 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 704 (1101)
.+|.+..+|..+|....+ ...... .+ .
T Consensus 198 ~~g~v~ald~~tG~~~W~-~~~~~~---------------~g-----------------------------------~-- 224 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWE-QRVALP---------------KG-----------------------------------R-- 224 (377)
T ss_pred CCCEEEEEEccCCCEeee-eccccC---------------CC-----------------------------------C--
Confidence 889999999988833221 100000 00 0
Q ss_pred eeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecC
Q 001318 705 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 784 (1101)
Q Consensus 705 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 784 (1101)
. ..-++.+. ...+ .+ .+..+++++.+|.+..||..+++
T Consensus 225 ----~-~~~~~~~~------------------~~~p----~~--~~~~vy~~~~~g~l~a~d~~tG~------------- 262 (377)
T TIGR03300 225 ----T-ELERLVDV------------------DGDP----VV--DGGQVYAVSYQGRVAALDLRSGR------------- 262 (377)
T ss_pred ----C-chhhhhcc------------------CCcc----EE--ECCEEEEEEcCCEEEEEECCCCc-------------
Confidence 0 00000000 0000 11 13356667777888887764321
Q ss_pred ccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCC-CeEEEEEecCCCcEE
Q 001318 785 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNII 862 (1101)
Q Consensus 785 ~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~l 862 (1101)
.+|....+ .....+ .++..+++++ +|.|..+|..+++.+........ ........ +..|
T Consensus 263 ~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l 323 (377)
T TIGR03300 263 VLWKRDAS--------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYL 323 (377)
T ss_pred EEEeeccC--------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEE
Confidence 13433210 011122 2445666666 89999999999987766532222 22233332 4478
Q ss_pred EEEeccCeEEEEEeecceEeeeecCcccCeeE-EEEcCCCCEEEEEeCCCceEEE
Q 001318 863 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVW 916 (1101)
Q Consensus 863 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~l~s~s~D~~v~iw 916 (1101)
++++.+|.|+++|..+++.+.++..+...+.. .++. + ..|+.++.||.|..+
T Consensus 324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 88999999999999999999888766654433 3333 3 358888899988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-09 Score=102.08 Aligned_cols=200 Identities=12% Similarity=0.133 Sum_probs=138.0
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEECCCCcee--eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee-cceEee
Q 001318 808 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS 883 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~~ 883 (1101)
..++.|++.+.-++++. +|.+.+-+....... ++.+.|+-++....|+..+.+++.+|++|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45678888888888876 788886665554443 47889999999999998788999999999999999998 445444
Q ss_pred e-ecCcccCeeEEEEcC-CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC--CcEEEEEeC
Q 001318 884 K-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHE 959 (1101)
Q Consensus 884 ~-l~~h~~~V~~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~d 959 (1101)
. .+-|...|.++.-+| .+.+|+||+.|..|++||.+.-.+ .++.+.. .+.|..+..+|. ++.|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k------Pl~~~~v--~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK------PLFKAKV--GGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC------ccccCcc--ccceEEEEecchhhhHHHHHHHh
Confidence 3 466888899998885 578999999999999999985321 1111111 158899999985 344555555
Q ss_pred CeEEEEEcCCceee---eeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEE-EEEcCCce
Q 001318 960 TQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAANLK 1015 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~---~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~-vwd~~~~~ 1015 (1101)
+..+|-+.+.+... .......|.+-++.-.|.....+|+|++ .|+.++ +|-..+++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 55666665544322 1111224555555555644446788765 566644 77655543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.4e-08 Score=108.91 Aligned_cols=227 Identities=16% Similarity=0.123 Sum_probs=135.4
Q ss_pred EEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCc
Q 001318 361 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 440 (1101)
Q Consensus 361 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 440 (1101)
+++++.+|.|.-+|..+|+.+-...+. ..... .. ..++..+++++.++.+..+|..+|+
T Consensus 68 v~v~~~~g~v~a~d~~tG~~~W~~~~~----------------~~~~~---~p--~v~~~~v~v~~~~g~l~ald~~tG~ 126 (377)
T TIGR03300 68 VYAADADGTVVALDAETGKRLWRVDLD----------------ERLSG---GV--GADGGLVFVGTEKGEVIALDAEDGK 126 (377)
T ss_pred EEEECCCCeEEEEEccCCcEeeeecCC----------------CCccc---ce--EEcCCEEEEEcCCCEEEEEECCCCc
Confidence 778888899999999999876542221 00011 11 1257888889999999999999998
Q ss_pred eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE-----EEeeeecCCccEEEE
Q 001318 441 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY-----SVCPHHKENIQFIFS 515 (1101)
Q Consensus 441 ~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-----~v~~~~~~~~~~l~s 515 (1101)
.+.... + .+.+.+.-.. .+. .++.++.++.+..||.++|+.+..+......+. +... . + ..++.
T Consensus 127 ~~W~~~-~---~~~~~~~p~v-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~-~-~~v~~ 195 (377)
T TIGR03300 127 ELWRAK-L---SSEVLSPPLV-ANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--A-D-GGVLV 195 (377)
T ss_pred Eeeeec-c---CceeecCCEE-ECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--E-C-CEEEE
Confidence 764321 1 1222211111 233 366677899999999999999887754332211 1111 1 2 36778
Q ss_pred EecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001318 516 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 595 (1101)
Q Consensus 516 ~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 595 (1101)
+..+|.+..+|..+++......... +.+...... .........+ .+..+++++.+|.++.||..+|+.
T Consensus 196 ~~~~g~v~ald~~tG~~~W~~~~~~---------~~g~~~~~~-~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 196 GFAGGKLVALDLQTGQPLWEQRVAL---------PKGRTELER-LVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRV 263 (377)
T ss_pred ECCCCEEEEEEccCCCEeeeecccc---------CCCCCchhh-hhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcE
Confidence 8888999999998876654332110 000000000 0000000001 134677788899999999999987
Q ss_pred eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 596 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 596 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+....... ..... .++..+++++.+|.+..+|..++
T Consensus 264 ~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 264 LWKRDASS----YQGPA--VDDNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred EEeeccCC----ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence 77665211 11122 24567777778888888887666
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-08 Score=112.12 Aligned_cols=204 Identities=13% Similarity=0.068 Sum_probs=118.3
Q ss_pred ccCCCCCeEEEEEecCCCeEE---EEEcC--CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC---
Q 001318 403 VKDPGVSVNRVIWSPDGSLFG---VAYSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--- 474 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~--- 474 (1101)
+......+..-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|||||+.+ +++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCC
Confidence 344455677889999998633 33333 458888998876443 33334455678999999963 333322
Q ss_pred -CCcEEEEeCCCC---ceEEEecCcccCeEEEeeeecCCccEEEEEe-cCCcEEEEecCC--C-CceeeecCCCCceeEE
Q 001318 475 -DKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDN--L-GSRVDYEAPGRWCTTM 546 (1101)
Q Consensus 475 -d~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~dg~i~~wd~~~--~-~~~~~~~~~~~~v~~~ 546 (1101)
|..+.+|++..+ +......++.+.....+| ++||+.|+..+ .+|...+|.+.. . .....+......+
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~--- 329 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNS--- 329 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCc---
Confidence 333455777653 333333333333445666 56667666655 466656664432 1 1122222222222
Q ss_pred EEccCCceEEeccccCceeEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE
Q 001318 547 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 547 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
....|+|||+.|+..+. ...|++||+.+++....... ...+....|+|||++|+..
T Consensus 330 ------------------~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 330 ------------------SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ------------------cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEEEE
Confidence 33455666666665543 24699999998876544322 1245679999999988865
Q ss_pred eC---CCcEEEEEecCc
Q 001318 624 TN---DNGIKILATSDG 637 (1101)
Q Consensus 624 ~~---dg~i~iw~~~~~ 637 (1101)
.. ...|+++++.++
T Consensus 389 ~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 389 AGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCceEEEEECCCC
Confidence 43 346778887766
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.3e-08 Score=120.84 Aligned_cols=257 Identities=9% Similarity=0.058 Sum_probs=162.4
Q ss_pred eeEEEEecCCCEEEEE-e-CCeEEEEECCCCceeeEecC--C------------CCCeEEEEEecCCCcEEEEEe-ccCe
Q 001318 808 VPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMP--P------------PPAATFLAFHPQDNNIIAIGM-DDSS 870 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~-s-dg~i~vwd~~~~~~~~~~~~--~------------~~~i~~l~~sp~d~~~lasg~-~dg~ 870 (1101)
...+++++++..++++ . ++.|++||.. +..+..+.+ . -.....+++++ +++.|+++. .++.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA 647 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence 3568898765444444 4 6889999975 444444332 1 12357899999 666555554 4578
Q ss_pred EEEEEeecceEeeeecC--c---------------ccCeeEEEEcC-CCCEEEEEeCCCceEEEeCCCcccccce---ee
Q 001318 871 IQIYNVRVDEVKSKLKG--H---------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FL 929 (1101)
Q Consensus 871 v~vwd~~~~~~~~~l~~--h---------------~~~V~~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~---~~ 929 (1101)
|+++|+.++. +.++.+ . -..-..|+|+| ++.++++.+.++.|++||..++...... ..
T Consensus 648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 9999987764 333211 0 01235799999 5666777778899999998775421100 00
Q ss_pred ecCCCCC---CCCCCCeEEEEcCCCcEEEE--EeCCeEEEEEcCCceeeeecc-----------CC--------CCCCCe
Q 001318 930 QIPTGRT---PTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWV-----------PR--------ESSAPI 985 (1101)
Q Consensus 930 ~~~~~~~---~~~~~v~~~~~s~dg~~la~--~~d~~v~vwd~~~~~~~~~~~-----------~~--------~h~~~i 985 (1101)
....+.. ........++|+|+|++|++ ..++.|++||+.++....... .. ..-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0001110 01134577999999986655 467899999998765321110 00 011235
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcc-cCCCC--CCCCccceEEEEeCCCCCEEEEEecCCcEEEE
Q 001318 986 THATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY-LPAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 986 ~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW 1062 (1101)
..++|+++|.++++-+.++.|++||..++........... ..+|. ...--.|..+++++ +|+++++-+.++.|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 6899999999989888999999999998876643321100 00110 01112366899998 68899999999999999
Q ss_pred eccCCC
Q 001318 1063 EPLESE 1068 (1101)
Q Consensus 1063 ~~~~~~ 1068 (1101)
|+.+++
T Consensus 886 d~~~~~ 891 (1057)
T PLN02919 886 DLNKGE 891 (1057)
T ss_pred ECCCCc
Confidence 998876
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-08 Score=121.28 Aligned_cols=260 Identities=9% Similarity=0.046 Sum_probs=163.5
Q ss_pred EEEEEcCC-CceEEeeecCceEEeeeccccccCCCCceeeeecC-ccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 742 SRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAP-QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 742 ~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
..++++++ +..+++-+.++.|++||.... ....... .......|..-. ..-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-------~i~~ig~~g~~G~~dG~~~~------a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-------FIVQIGSTGEEGLRDGSFED------ATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-------EEEEEccCCCcCCCCCchhc------cccCCCcEEEEeCCCCE
Confidence 46788875 556666666788998886322 1100000 000001111100 12234688999999887
Q ss_pred EEEEe--CCeEEEEECCCCceeeEecCC-----------------CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 820 VMSAS--GGKISLFNMMTFKTMATFMPP-----------------PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 820 la~~s--dg~i~vwd~~~~~~~~~~~~~-----------------~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
|+++. ++.|+++|..++. +.++.+. -.....++|+|+++.++++...++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77765 5779999987654 4443211 11346799999666777777788999999987765
Q ss_pred Eeeeec---------Cc------ccCeeEEEEcCCCCEE-EEEeCCCceEEEeCCCcccccce--------eeecC---C
Q 001318 881 VKSKLK---------GH------SKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNR--------FLQIP---T 933 (1101)
Q Consensus 881 ~~~~l~---------~h------~~~V~~l~~s~dg~~l-~s~s~D~~v~iwd~~~~~~~~~~--------~~~~~---~ 933 (1101)
.. .+. ++ -....+|+|+|||+.| ++-+.++.|++||+.++...... ..... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 32 111 11 1234679999999855 45566789999999875421100 00000 0
Q ss_pred CC--CCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccC-----------CCCCCCeeEEEEcCCCCEEEE
Q 001318 934 GR--TPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP-----------RESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 934 ~~--~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~-----------~~h~~~i~~l~~spdg~~l~s 999 (1101)
+. .........++++++|..+++ ..++.|++||..++........ .+.-.....++++++|+++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000123468999999987777 5889999999988776533211 112236789999999999998
Q ss_pred EEcCCeEEEEEcCCcee
Q 001318 1000 CFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 1000 ~s~dg~v~vwd~~~~~~ 1016 (1101)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999999875
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=130.57 Aligned_cols=199 Identities=19% Similarity=0.347 Sum_probs=156.8
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.+-..|.++.=+|...+ .+||+.||.|++|.+..++.+.. |+ ..|. ..|+.+.|+.+|...
T Consensus 2206 ~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKF 2266 (2439)
T ss_pred cccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCce
Confidence 45678999999999986 89999999999999998877653 11 2233 789999999999999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEec---CCCcEEEEeCCC-CceEEEecCcccC
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATN-GAKQYIFEGHEAP 498 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~---~d~~i~iwd~~~-~~~~~~~~~h~~~ 498 (1101)
..+..||.+.+|.+.. +.....+.|........|-. . .+++++ .++.+.+||..- +..-..-..|.+.
T Consensus 2267 ~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred eeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCC
Confidence 9999999999999883 34446778999999999976 3 466654 578899999642 2221222779999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
++++++.|. .++|++|+.+|.|++||++..+.+..+.. ++ ...++++
T Consensus 2339 aT~l~~~P~--~qllisggr~G~v~l~D~rqrql~h~~~~------------------------------~~-~~~~f~~ 2385 (2439)
T KOG1064|consen 2339 ATVLAYAPK--HQLLISGGRKGEVCLFDIRQRQLRHTFQA------------------------------LD-TREYFVT 2385 (2439)
T ss_pred ceEEEEcCc--ceEEEecCCcCcEEEeehHHHHHHHHhhh------------------------------hh-hhheeec
Confidence 999998654 48999999999999999998776665543 11 1257999
Q ss_pred EeCCCcEEEEECCCCceeEEEcC
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
|+..|.|+||++.....+..+..
T Consensus 2386 ~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2386 GSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred cCcccceEEEEccccchhhcCch
Confidence 99999999999998877777753
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=115.09 Aligned_cols=210 Identities=15% Similarity=0.188 Sum_probs=149.5
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCC-cee---eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCc
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 477 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~---~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~ 477 (1101)
.+.||...|..++--.+.+-+++++.|++|++|.++.. ..+ ....+++.|..+|.++.|-.+.+ +++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 47899999999998888999999999999999998742 222 25567889999999999999987 56654 789
Q ss_pred EEEEeCCCCceEEEec-----CcccCeEEEeeeecCCccEEEEE-ecCCcEEEEecCCCCceeeecCCCCceeEEEEccC
Q 001318 478 IKVWDATNGAKQYIFE-----GHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 551 (1101)
Q Consensus 478 i~iwd~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 551 (1101)
|.+||.--|+.+..+. +-.+.|.++ ++-+..+++.| +...+|+++|.+..+-...+...+. |
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna--------~- 873 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA--------P- 873 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccC--------C-
Confidence 9999988887765332 222334333 34455566665 6789999999987654443322110 0
Q ss_pred CceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001318 552 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 631 (1101)
..+..+.++++.+.|++++++-..|.|.+.|.++|+.+..+..... ....++ .|..+.|+....|.++-+
T Consensus 874 -------~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaV 943 (1034)
T KOG4190|consen 874 -------GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAV 943 (1034)
T ss_pred -------CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEe
Confidence 1123566788888889999999999999999999998877653321 111111 345667777777888888
Q ss_pred -EEecCc
Q 001318 632 -LATSDG 637 (1101)
Q Consensus 632 -w~~~~~ 637 (1101)
|...++
T Consensus 944 nWhaldg 950 (1034)
T KOG4190|consen 944 NWHALDG 950 (1034)
T ss_pred eehhcCC
Confidence 876655
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-08 Score=96.48 Aligned_cols=190 Identities=19% Similarity=0.123 Sum_probs=131.3
Q ss_pred CCCcEEEEEec---CCCeEEEEEecCCcEEEEeCCCcceeEe-eeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 345 GSSPMSMDFHP---VQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 345 ~~~v~~~~~sp---dg~~llatg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
++.+..+.|+- +|...++-+-.+|.|.++.....+.... +++..- .-....-.++.|++.|.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~--------------ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK--------------KISVVEALSLDISTSGT 134 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh--------------hhhheeeeEEEeeccCc
Confidence 45566666653 4554567777788888887654332221 111100 00011345788999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC-CCceEEE-ecCcccC
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEAP 498 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~~ 498 (1101)
-++++..+|.+.+-+.... .+....++++|.-..+.+.|+..... ++.+||+|+.+..||++ .++.+.. .+-|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 9999999999985554443 24444468899999999999987776 79999999999999999 4555544 4568888
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccC
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 551 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 551 (1101)
|.++.-++ +.+.++++|+.|-.|++||.++......-....+.|..+..+|.
T Consensus 213 V~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 213 VVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE 264 (339)
T ss_pred eEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecch
Confidence 98887543 45679999999999999999976555443444455666665554
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.4e-09 Score=112.36 Aligned_cols=303 Identities=13% Similarity=0.153 Sum_probs=186.5
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCC--CCCeEEEEEecC-
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP--GVSVNRVIWSPD- 418 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~spd- 418 (1101)
+.-.+.+.++.++|.|+. +|.++.-| +.|-|+...-.... ...| .-.|-.+.|||.
T Consensus 21 l~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~ppr-------------------~l~h~tpw~vad~qws~h~ 79 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPPR-------------------WLHHITPWQVADVQWSPHP 79 (1081)
T ss_pred EEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCce-------------------eeeccCcchhcceecccCC
Confidence 445678999999999997 67766644 34445543211110 1111 124666778773
Q ss_pred -CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc-eEEEecCcc
Q 001318 419 -GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHE 496 (1101)
Q Consensus 419 -g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~ 496 (1101)
-.+-++......-.+|++.....-...+.+.||...|+.+.|.+.... ++++++.|..+..||+++.. .+..+..-.
T Consensus 80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeeccc
Confidence 334444444555778998754433444568899999999999999887 89999999999999998754 455554444
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCc-eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
..-..|.|+... + .+.+.+..+.|++||.+.+.. ...+.++...+..+.|..--. ..
T Consensus 159 s~asqVkwnyk~-p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~--------------------s~ 216 (1081)
T KOG0309|consen 159 SAASQVKWNYKD-P-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY--------------------SE 216 (1081)
T ss_pred ccCceeeecccC-c-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh--------------------hh
Confidence 455668887543 3 355556678899999998654 445566666666665543221 34
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC-----------CEEEEEeCCCcEEEEEecCcccccccc
Q 001318 576 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-----------CLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 576 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----------~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+.+.+.||+|+.||............... ..+..-.+.|-| ..+..-.-+.....|+..++.+.+..+
T Consensus 217 ~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 217 IMSSSNDGTVKFWDYSKSTTESKRTVTTN-FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred hcccCCCCceeeecccccccccceecccc-CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence 78889999999999875433222211111 134444444422 222222223344456666676788889
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
.||.+.+..- .++..+ .-+.-.....-.|++-+.|.++++|.+.+
T Consensus 296 ~GH~D~V~eF------lWR~r~-------------------------e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 296 VGHDDVVLEF------LWRKRK-------------------------ECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCcchHHHHH------hhhhcc-------------------------cccCCCCccceeEEEeecCCceEeeeccH
Confidence 9998875421 001000 00111112334688999999999999874
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-09 Score=110.74 Aligned_cols=210 Identities=13% Similarity=0.195 Sum_probs=155.9
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC-------CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEE
Q 001318 803 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 874 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 874 (1101)
+|...|+.++--.+.+.+++++ |.+|++|.++. ..+..++..|..+|..+.|-. +.++++++ ||-|.+|
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLW 809 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceee
Confidence 4888898887777777788888 99999999863 346778899999999999999 88888764 8899999
Q ss_pred EeecceEeeeecC--cccCeeEEEEcC--CCCEEEEE-eCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 875 NVRVDEVKSKLKG--HSKRITGLAFSH--ALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 875 d~~~~~~~~~l~~--h~~~V~~l~~s~--dg~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
|.--++++..+.. ..+.+..+.--+ |...++.+ +...+|+++|.+.++...........++. ..+++++..+
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn---a~~R~iaVa~ 886 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN---ALTRAIAVAD 886 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc---hheeEEEecc
Confidence 9887777764421 223333333333 33444433 67899999999887644333333223332 4678999999
Q ss_pred CCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEE-EEcCCceeeeecC
Q 001318 950 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV-FSAANLKLRCRIN 1021 (1101)
Q Consensus 950 dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~v-wd~~~~~~~~~~~ 1021 (1101)
.|++++++ ++|.|.+.|..+|+.+..|.+- .-....++ .|..+.|+....|.++.| |-..+|....+.+
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 99999995 8999999999999999988732 23333444 466778888888999999 9999888877666
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-07 Score=102.41 Aligned_cols=109 Identities=13% Similarity=0.320 Sum_probs=81.6
Q ss_pred EEEEecCCCeEEEEEec----CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 350 SMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
-..|+|... ++|+++. .|.|-||- ++|+.-...+ . .-.+++++|+|..-.||.|
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~---P~hatSLCWHpe~~vLa~g 77 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------Y---PVHATSLCWHPEEFVLAQG 77 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------c---ceehhhhccChHHHHHhhc
Confidence 346788877 4666654 46788874 5555332111 1 1235679999999999999
Q ss_pred EcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 426 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 426 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
-.-|.+.+|...+.+.- .....|..+|..+.||++|. .++|+..-|.|.+|...-
T Consensus 78 we~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 78 WEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred cccceeEEEecCCceee---eeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeee
Confidence 99999999998875422 23456999999999999999 899999999999998763
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=104.21 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=112.8
Q ss_pred cEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE---
Q 001318 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV--- 424 (1101)
Q Consensus 348 v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las--- 424 (1101)
+..+.++|+|+ |+|++..+....++++..... ..+.++.. .... .-+++.|-.+......
T Consensus 65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~~---~~~ai~~~~~~~sv~v~dk 127 (390)
T KOG3914|consen 65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVPK---RPTAISFIREDTSVLVADK 127 (390)
T ss_pred ccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------eccc---CcceeeeeeccceEEEEee
Confidence 34455666777 588887777777777655433 11111100 0111 2233444444444433
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCcccCeEEEe
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVC 503 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~ 503 (1101)
++....+.+|....+.+.. +-||-..++.++|+||++ +++++..|..|+|-....--.+..| -||+..|..++
T Consensus 128 agD~~~~di~s~~~~~~~~----~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRCEP----ILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred cCCceeeeeecccccCcch----hhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 4556667777776654332 568999999999999998 7999999999999887766666555 57999999998
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeecC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 538 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 538 (1101)
.. ++..|+++|.|++|++||+.+++.+.++..
T Consensus 202 l~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 202 LT---DNYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ec---cCceeeecCCCCcEEEEecccCCcccccch
Confidence 63 336799999999999999999888765543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=122.62 Aligned_cols=200 Identities=15% Similarity=0.227 Sum_probs=155.3
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
+..|-..|.++.=+|...+-+||+.||.|++|.+..++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4455668899999999999999999999999999999887655443 33 8999999999999 688888999999999
Q ss_pred CCCCceEEEecCcccCeEEEeeeecCCccEEEEEe---cCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecc
Q 001318 483 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 559 (1101)
Q Consensus 483 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 559 (1101)
+. .+.....+.|......+.|.. ..+++++ .++.+.+||....... ..+...
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~--------------------s~v~~~ 2334 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMN--------------------SLVHTC 2334 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCccc--------------------ceeeee
Confidence 65 677777888988888887754 3566654 4688999987542221 111223
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
+.+..+++++-|....|++||.+|.|++||++..+.++.++. +. ...++++|+..|.++||++... .
T Consensus 2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~-~ 2401 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF-G 2401 (2439)
T ss_pred cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc-c
Confidence 344666777777778999999999999999999888777653 33 5678999999999999999776 5
Q ss_pred ccccc
Q 001318 640 LLRTF 644 (1101)
Q Consensus 640 ~~~~~ 644 (1101)
.+..+
T Consensus 2402 ll~~~ 2406 (2439)
T KOG1064|consen 2402 LLHTF 2406 (2439)
T ss_pred hhhcC
Confidence 55544
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-06 Score=87.19 Aligned_cols=208 Identities=16% Similarity=0.148 Sum_probs=137.9
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCCC--ceeeE---ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 810 CFALSKNDSYVMSASGGKISLFNMMTF--KTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 810 ~~~~s~dg~~la~~sdg~i~vwd~~~~--~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
.++.+.||+.||+..|..|.|=..++. ..+.. -+.....=+.++||| |+.+||.+...|+|++||+.... +..
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEE
Confidence 367889999999999988888776542 12222 222344568899999 99999999999999999987543 323
Q ss_pred ecC-------cccCeeEEEEcCC------CCEEEEEeCCCceEEEeCCCcccccceeeec--CCCCCCCCCCCeEEEEcC
Q 001318 885 LKG-------HSKRITGLAFSHA------LNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 885 l~~-------h~~~V~~l~~s~d------g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~ 949 (1101)
+.. -..+|.+|.|-+- ...|+....+|.++=|-+..+.......... +..+. +..|.++.++|
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y--p~Gi~~~vy~p 157 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY--PHGINSAVYHP 157 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC--CCceeEEEEcC
Confidence 321 2356777777542 1246666778888877764432222221111 11222 25899999999
Q ss_pred CCcEEEEEe--C-C---------eEEEEEcCCcee----e-----------------eec-----cC-CCCCCCeeEEEE
Q 001318 950 DQIHFLVVH--E-T---------QLAIFETTKLEC----V-----------------KQW-----VP-RESSAPITHATF 990 (1101)
Q Consensus 950 dg~~la~~~--d-~---------~v~vwd~~~~~~----~-----------------~~~-----~~-~~h~~~i~~l~~ 990 (1101)
.-++|++++ . . .+..|.+-++.. + +.. .. ......|..|..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 988888731 1 1 356665533211 0 000 00 012567999999
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 991 SCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 991 spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
||||++||+...+|.|.+|++.+.++.....
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999998887766
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-06 Score=97.02 Aligned_cols=210 Identities=8% Similarity=0.046 Sum_probs=129.2
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCc-EEEEEec---cCeEEEEEeecceEeeeecCcccCeeEEEEcCCC
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMD---DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 901 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~---dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg 901 (1101)
..|.+-|..... .+.+.... ......|+| |++ .++..+. +..|+++|+.+++..... ...+.+....|||||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCC
Confidence 346666654333 33333233 677899999 776 4665443 357999999887654433 345556678899999
Q ss_pred CEEEE-EeCC--CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC----eEEEEEcCCceeee
Q 001318 902 NVLVS-SGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVK 974 (1101)
Q Consensus 902 ~~l~s-~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~----~v~vwd~~~~~~~~ 974 (1101)
+.|+. .+.+ ..|.++|+.+++.. .+....+ ......|+|||+.|+...+. .|.++|+.+++..+
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 87764 4334 45777788775421 1111111 12455799999998885443 78899998887754
Q ss_pred eccCCCCCCCeeEEEEcCCCCEEEEEEcC---------CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCC
Q 001318 975 QWVPRESSAPITHATFSCDSQLVYACFLD---------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1045 (1101)
Q Consensus 975 ~~~~~~h~~~i~~l~~spdg~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~ 1045 (1101)
.... +. ....|||||++|+..+.. ..|.+.|+++++.. .+... + . .. ...|+|
T Consensus 316 lt~~-g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~-~~--~p~~SP- 377 (419)
T PRK04043 316 VVFH-GK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V-NQ--FPRFSS- 377 (419)
T ss_pred CccC-CC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C-cC--CeEECC-
Confidence 4321 21 124899999998876643 36888899888753 33311 1 1 11 478999
Q ss_pred CCCEEEEEecC-Cc--EEEEeccC
Q 001318 1046 EPNEFALGLSD-GG--VHVFEPLE 1066 (1101)
Q Consensus 1046 d~~~l~s~~~d-g~--v~vW~~~~ 1066 (1101)
||+.|+....+ +. +.+.++..
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEecCC
Confidence 67776655443 33 55555533
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=93.85 Aligned_cols=224 Identities=16% Similarity=0.212 Sum_probs=142.1
Q ss_pred CCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCc--eeeeeeeeccccC------------CeeEEEEcCCCCeEEEE
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVG------------GVNDIAFSHPNKQLCVI 470 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~l~~h~~------------~V~~~~~s~d~~~~~l~ 470 (1101)
....-|+++.|...|.||++|...|.|.+|.-+... ..+-+.++++|.. .|..+.|..++..-.++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 345689999999999999999999999999766432 2222334555543 48889998776554677
Q ss_pred EecCCCcEEEEeCCCCce-------------------------------------E-----EEe-cCcccCeEEEeeeec
Q 001318 471 TCGDDKTIKVWDATNGAK-------------------------------------Q-----YIF-EGHEAPVYSVCPHHK 507 (1101)
Q Consensus 471 s~~~d~~i~iwd~~~~~~-------------------------------------~-----~~~-~~h~~~v~~v~~~~~ 507 (1101)
..+.|++|++|.+..... + +.. ..|...++++.|.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-- 181 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-- 181 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec--
Confidence 778899999998754300 0 001 2466667777764
Q ss_pred CCccEEEEEecCCcEEEEecCCCCceeee---cCCCCceeEEEEccCCceEEeccccCceeEEEEcCCC-CEEEEEeCCC
Q 001318 508 ENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDF 583 (1101)
Q Consensus 508 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg 583 (1101)
.|.+.++++ .|=.|.+|+++-......+ ..+... .-...++...|+|.. +.+...+..|
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nme----------------eLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNME----------------ELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHH----------------HHHHHHhhcccCHhHcceEEEecCCC
Confidence 443556554 4788999988754433221 111110 000123333444433 4566678899
Q ss_pred cEEEEECCCCce------eE--EEcCC------CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccc
Q 001318 584 SIKFWDMDSVQL------LT--SIDAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 648 (1101)
Q Consensus 584 ~i~iwd~~~~~~------~~--~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 648 (1101)
.|++-|++.... +. .+.+. +-...|..+.|+++|+++++-+. -+|++||+...+.++.++.-|.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 999999974221 11 11111 11235778999999999987764 7999999988877777664443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-08 Score=110.34 Aligned_cols=257 Identities=12% Similarity=0.176 Sum_probs=165.1
Q ss_pred CcEEEEEecCCC-eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeEEE
Q 001318 347 SPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV 424 (1101)
Q Consensus 347 ~v~~~~~spdg~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 424 (1101)
.|..+.|||.-. .+-++......-.||++.....-. ..-++.+|...|+.+.|.| .-..||+
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a----------------Ief~lhghsraitd~n~~~q~pdVlat 132 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA----------------IEFVLHGHSRAITDINFNPQHPDVLAT 132 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccc----------------eEEEEecCccceeccccCCCCCcceee
Confidence 355566665321 123344444566788876433221 1115789999999999999 5668999
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ceEEEecCcccCeEEEe
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~v~ 503 (1101)
++.|..|..||+.+... .+.....-......++|+--.. .++..+..+.|.+||.+.| .++..+++|...|+.+.
T Consensus 133 csvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~ 208 (1081)
T KOG0309|consen 133 CSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSID 208 (1081)
T ss_pred ccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHH
Confidence 99999999999998653 3333444446678899987776 3666677788999999876 56788999999999998
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeec-CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
|..... ..+.+++.||+|++||.+......... ....++..-.+.|-|.-. ++-+...++.+..-.-+
T Consensus 209 fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~----------~~mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 209 FNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY----------CIMPMVGGNMVPQLRCE 277 (1081)
T ss_pred Hhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee----------EeccccCCeeeeecccc
Confidence 864433 368899999999999998654433222 223345555555555411 11111111222222223
Q ss_pred CcEEEEECCC-CceeEEEcCCCCCCCcCeEEEcc----------CCCEEEEEeCCCcEEEEEecC
Q 001318 583 FSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK----------DGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 583 g~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
.....|+..+ .++++++.+|.. .|....|-. ..-.|++-+.|..+++|-+.+
T Consensus 278 n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 278 NSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred chhhhhccccCCcceeeecCcch--HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 3445565544 357888887654 454443322 123799999999999998764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-06 Score=85.50 Aligned_cols=216 Identities=15% Similarity=0.132 Sum_probs=136.3
Q ss_pred EEEecCCCcEEEEEeccCeEEEEEeecc--eEeeeecCc---ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccc
Q 001318 852 LAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGH---SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 926 (1101)
Q Consensus 852 l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l~~h---~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~ 926 (1101)
++.+. +|++||+- .|..|.|-..++. .++.+.+-. ...-..++||||+.+||.+...|+|+++|+.+.+....
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 45666 88888865 5777777665441 233333222 23356799999999999999999999999987443221
Q ss_pred eeeecCCCCCCCCCCCeEEEEcCCC-------cEEEEEeCCeEEEEEcCCc-----eeeeeccCCC-CCCCeeEEEEcCC
Q 001318 927 RFLQIPTGRTPTAQSDTRVQFHQDQ-------IHFLVVHETQLAIFETTKL-----ECVKQWVPRE-SSAPITHATFSCD 993 (1101)
Q Consensus 927 ~~~~~~~~~~~~~~~v~~~~~s~dg-------~~la~~~d~~v~vwd~~~~-----~~~~~~~~~~-h~~~i~~l~~spd 993 (1101)
.......+ .....|..+.|-+.. ++|+...+|.++-|-+..+ +.-..+.... +...|.++.+.|.
T Consensus 81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 11111111 112467777776543 4566688888888876332 2333333323 3778999999999
Q ss_pred CCEEEEEEc----C-------CeEEEEEcCCceeeeecCCC---------------------cccCCCCCCCCccceEEE
Q 001318 994 SQLVYACFL----D-------ATVCVFSAANLKLRCRINPS---------------------AYLPAGVSSSNVHPLVIA 1041 (1101)
Q Consensus 994 g~~l~s~s~----d-------g~v~vwd~~~~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~i~ 1041 (1101)
.++|++|+. | .-+..|.+-++....+.-.. -+...+.....|+ .+.
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmS 236 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMS 236 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEE
Confidence 998877762 1 13677877665443321100 0011111122344 677
Q ss_pred EeCCCCCEEEEEecCCcEEEEeccCCC--ccccCC
Q 001318 1042 AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1074 (1101)
Q Consensus 1042 ~~~~d~~~l~s~~~dg~v~vW~~~~~~--~~~~~~ 1074 (1101)
-+| ||..||+...+|.|.+|++++-. +.|...
T Consensus 237 lSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 237 LSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 788 78999999999999999998876 666653
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-06 Score=97.80 Aligned_cols=156 Identities=9% Similarity=0.003 Sum_probs=98.7
Q ss_pred CcEEEEEecCCCeEEEEEec---CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
.+....|||||+++++..+. +..|.++|+.+++... +....+.+...+|||||+.|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEEE
Confidence 77889999999964554333 3479999998887643 223455667788999999887
Q ss_pred EEE-c--CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC-CcEEEEeCCCCceEEEecCcccCe
Q 001318 424 VAY-S--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 424 s~~-~--d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
... . +..|.++|+.+++..+ +..+........|+|||+.+++.+...+ ..|.+.|+.+|+..+.... ...
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred EEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 643 2 3568888988876332 3333333445689999997544443222 2688889888776443321 111
Q ss_pred EEEeeeecCCccEEEEEecC---------CcEEEEecCCCC
Q 001318 500 YSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLG 531 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~d---------g~i~~wd~~~~~ 531 (1101)
...| +++|+.++..+.. ..|.+.|+.++.
T Consensus 323 -~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 323 -NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred -CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 1355 5666777666543 256666766543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-06 Score=94.61 Aligned_cols=309 Identities=10% Similarity=0.051 Sum_probs=171.5
Q ss_pred EEEEecCCCcEEEEeCCCCceEEEecCcc--cCeE-----EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCC
Q 001318 468 CVITCGDDKTIKVWDATNGAKQYIFEGHE--APVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 540 (1101)
Q Consensus 468 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~-----~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 540 (1101)
.++.++.++.+.-+|..+|+.+....-.. .... .+.-.+.-.+..++.++.+|.+..+|..+++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 46667778899999999999887654221 0000 0000011122467778889999999999988877665432
Q ss_pred CceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCC---cCeEEEccCC
Q 001318 541 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDG 617 (1101)
Q Consensus 541 ~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~ 617 (1101)
....+-. + .+..++.+..++.|+.+|..+|+.+..+........ ..+... .+
T Consensus 151 ~~~ssP~---------------------v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~ 205 (394)
T PRK11138 151 EALSRPV---------------------V--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF 205 (394)
T ss_pred ceecCCE---------------------E--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence 2100000 0 123577778899999999999999988864321000 011111 23
Q ss_pred CEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCcccc
Q 001318 618 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS 697 (1101)
Q Consensus 618 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1101)
..++.++.+|.+..+|..+|....+ ...... .
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~-~~~~~~---------------~-------------------------------- 237 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQ-QRISQP---------------T-------------------------------- 237 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhhe-eccccC---------------C--------------------------------
Confidence 4577778889999999888833221 100000 0
Q ss_pred ccCccceeeccCCCcc-eeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCC
Q 001318 698 LADVKPRITEESNDKS-KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 776 (1101)
Q Consensus 698 ~~~~~~l~~~~~d~~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 776 (1101)
+ . ..+ +++++ ...++ + .+..++.++.+|.+..+|..+++
T Consensus 238 ---~------~--~~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~----- 277 (394)
T PRK11138 238 ---G------A--TEIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ----- 277 (394)
T ss_pred ---C------c--cchhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-----
Confidence 0 0 000 00000 00010 0 12345556666776666653221
Q ss_pred ceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCC-CCeEEEEE
Q 001318 777 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAF 854 (1101)
Q Consensus 777 ~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~ 854 (1101)
.+|....+. ...+.. ++..++.++ +|.+..+|..+++.+....... ....+..+
T Consensus 278 --------~~W~~~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v 333 (394)
T PRK11138 278 --------IVWKREYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL 333 (394)
T ss_pred --------EEEeecCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence 134322110 111222 344555555 8999999999988765443211 12233333
Q ss_pred ecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE-EEEcCCCCEEEEEeCCCceEEEeC
Q 001318 855 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 855 sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
. + .+|+.++.||.|++.|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 334 ~--~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 Y--N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred E--C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3 3 36677899999999999999988776543333332 222 2457888899999887764
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-06 Score=84.89 Aligned_cols=242 Identities=13% Similarity=0.076 Sum_probs=153.3
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
..+||.|+ .|...+|...+.+.... -..+...|+-+.-.-+...-+..++.|.++++.++.-+.....+.-..-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34778876 79999999986544322 23333333221111111234556788889999888755433322211123889
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceee
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 973 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~ 973 (1101)
+++++|++++++.+....|..|.++.............. ...-.+..|+.....+|+ ..||.+.|||+......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-----~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-----SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-----CCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 999999999999999999999999864432222111111 123478899999999999 59999999999876543
Q ss_pred eec---cCCCCCCCeeEEEEcCCCC--EEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001318 974 KQW---VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1048 (1101)
Q Consensus 974 ~~~---~~~~h~~~i~~l~~spdg~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~ 1048 (1101)
... ....|.+.+..+.||+-|. +|+..-.-+.+.|-|+++++-...+.+....-..|....+. .-.|+. ++.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n~ 315 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-ENE 315 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CCc
Confidence 222 1235899999999998665 34444456789999999998888776544332233333344 566665 344
Q ss_pred EEEEEecCCcEEEEeccCC
Q 001318 1049 EFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1049 ~l~s~~~dg~v~vW~~~~~ 1067 (1101)
.+.+...+ .+.-|++...
T Consensus 316 s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 316 SNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred ccccccch-hhheeecccc
Confidence 44444433 3456766543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-06 Score=91.12 Aligned_cols=224 Identities=14% Similarity=0.114 Sum_probs=138.5
Q ss_pred CCeEEEEECCCCceeeEecCC--CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCC
Q 001318 825 GGKISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 902 (1101)
Q Consensus 825 dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 902 (1101)
+|.|..||..+|+.+....-. .....+..+ + ++..+++++.++.|+.||..+|+.+.+... .+.+..... .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccc
Confidence 578999999999998877531 122222233 2 345666678999999999999998877654 222222122 2455
Q ss_pred EEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCC
Q 001318 903 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES 981 (1101)
Q Consensus 903 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h 981 (1101)
.++.++.|+.+..+|..+|+............. ..........++..++++ .++.|..+|+.+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 666677888999999999886443211111110 011222223336666664 599999999999999877654221
Q ss_pred C--C------CeeEEEEcCCCCEEEEEEcCCe-EEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 982 S--A------PITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 982 ~--~------~i~~l~~spdg~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
. . .+..-.+..++ .++.++.++. +.+ |+.+++.+-... ..+ .. . .... ++..|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence 1 1 12222333345 6666777775 555 999999663222 111 11 1 1234 4577887
Q ss_pred EecCCcEEEEeccCCCcccc
Q 001318 1053 GLSDGGVHVFEPLESEGKWG 1072 (1101)
Q Consensus 1053 ~~~dg~v~vW~~~~~~~~~~ 1072 (1101)
++.++.|..||+.+|+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 77999999999999998774
|
... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-05 Score=82.34 Aligned_cols=208 Identities=15% Similarity=0.097 Sum_probs=140.5
Q ss_pred CeeEEEEec-CCCEEEEEe-CC-eEEEEECCCCceeeEecCCCCCe--EEEEEecCCCcEEEEEe-----ccCeEEEEEe
Q 001318 807 AVPCFALSK-NDSYVMSAS-GG-KISLFNMMTFKTMATFMPPPPAA--TFLAFHPQDNNIIAIGM-----DDSSIQIYNV 876 (1101)
Q Consensus 807 ~i~~~~~s~-dg~~la~~s-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~sp~d~~~lasg~-----~dg~v~vwd~ 876 (1101)
....++.+| +...++.+. -| ...+||..+++....+....+.- -.-+||+ ||++|++.- ..|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345688888 555666666 44 48999999999988887655443 2478999 888888764 3579999999
Q ss_pred e-cceEeeeecCcccCeeEEEEcCCCCEEEEEeC------------------CCceEEEeCCCcccccceeeecCCCCCC
Q 001318 877 R-VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------------------DSQLCVWSSDGWEKQKNRFLQIPTGRTP 937 (1101)
Q Consensus 877 ~-~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 937 (1101)
. +.+.+..+..|.-.--.+.+.|||+.|+.+-. +-.+..-|..+|+......+.. ..+.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~- 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ- 162 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc-
Confidence 9 67788888877655667889999988876632 1234445555555333222110 1122
Q ss_pred CCCCCeEEEEcCCCcEEEEE-eCC-------eEEEEEcCCceeeeeccC-----CCCCCCeeEEEEcCCCCEEEEEE-cC
Q 001318 938 TAQSDTRVQFHQDQIHFLVV-HET-------QLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACF-LD 1003 (1101)
Q Consensus 938 ~~~~v~~~~~s~dg~~la~~-~d~-------~v~vwd~~~~~~~~~~~~-----~~h~~~i~~l~~spdg~~l~s~s-~d 1003 (1101)
.+|..+++.++|..++.. ..+ -|.+++.... +..+.. ..-...|-+|+++++|.++++.| .-
T Consensus 163 --lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 163 --LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred --cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 479999999999877763 222 2444443332 222211 12256899999999999876555 66
Q ss_pred CeEEEEEcCCceeeeecC
Q 001318 1004 ATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 1004 g~v~vwd~~~~~~~~~~~ 1021 (1101)
+.+.+||..+++++....
T Consensus 239 g~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CEEEEEECCCCCEeeccc
Confidence 789999999999997766
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.5e-06 Score=92.85 Aligned_cols=211 Identities=9% Similarity=0.003 Sum_probs=122.1
Q ss_pred CCeEEEEECCCCceeeEecCCCCC-----eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc-------Ce
Q 001318 825 GGKISLFNMMTFKTMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-------RI 892 (1101)
Q Consensus 825 dg~i~vwd~~~~~~~~~~~~~~~~-----i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~-------~V 892 (1101)
++.|.-+|.++|+.+..+...... ..+.... ++ .++.++.+|.+..+|..+|+.+-....... ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 667777777777776665432111 0111222 23 456677889999999988876544321100 01
Q ss_pred eEEEEcC--CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCc
Q 001318 893 TGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 970 (1101)
Q Consensus 893 ~~l~~s~--dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~ 970 (1101)
..+.-+| .+..++.++.++.+..+|..+|+..-... .+ ....+.. .+++.++...++.+..+|..++
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YG------SVNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CC------CccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 1111122 24567777789999999999886533221 11 1111221 2344444478899999999999
Q ss_pred eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001318 971 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1050 (1101)
Q Consensus 971 ~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l 1050 (1101)
+.+-...... .....+..+ .+.+|+.++.||.|++.|..+|+.+.+.+. ..+ . +.. ...+. +..|
T Consensus 315 ~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----~~~---~-~~s-~P~~~---~~~l 379 (394)
T PRK11138 315 VELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV----DSS---G-FLS-EPVVA---DDKL 379 (394)
T ss_pred cEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc----CCC---c-cee-CCEEE---CCEE
Confidence 7754332111 111222222 255677889999999999999999887662 111 0 110 11121 3578
Q ss_pred EEEecCCcEEEEec
Q 001318 1051 ALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1051 ~s~~~dg~v~vW~~ 1064 (1101)
+.++.||.|+.+++
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 88899999998875
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.3e-07 Score=99.35 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=93.9
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 426 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 426 (1101)
.+++++|+|..- +|+.|-.-|.+.+|...+.+... +...|..+|..+.||++|..|.++.
T Consensus 61 hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~ht-------------------v~~th~a~i~~l~wS~~G~~l~t~d 120 (1416)
T KOG3617|consen 61 HATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTETHT-------------------VVETHPAPIQGLDWSHDGTVLMTLD 120 (1416)
T ss_pred ehhhhccChHHH-HHhhccccceeEEEecCCceeee-------------------eccCCCCCceeEEecCCCCeEEEcC
Confidence 356699999876 69999999999999988765533 4678999999999999999999999
Q ss_pred cCCeEEEEEccCCceeeeeeeecccc--CCe--eEEEEcCCCCeE----EEEEecCCCcEE-EEeCCCCceEEEecCccc
Q 001318 427 SRHIVQIYSYHGGDEVRQHLEIDAHV--GGV--NDIAFSHPNKQL----CVITCGDDKTIK-VWDATNGAKQYIFEGHEA 497 (1101)
Q Consensus 427 ~d~~i~iwd~~~~~~~~~~~~l~~h~--~~V--~~~~~s~d~~~~----~l~s~~~d~~i~-iwd~~~~~~~~~~~~h~~ 497 (1101)
.-|.|.+|...--..+... .+-.|. ..+ .|...++++... ..+..++++-+- .++++....-+... |
T Consensus 121 ~~g~v~lwr~d~~g~~q~~-~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-- 196 (1416)
T KOG3617|consen 121 NPGSVHLWRYDVIGEIQTS-NIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-- 196 (1416)
T ss_pred CCceeEEEEeeeccccccc-hhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c--
Confidence 9999999988733223211 111222 223 444456663210 122333333332 33333211111111 1
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEec
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLY 527 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~ 527 (1101)
+..++|..++.++.+|+|+--|-
T Consensus 197 -------sgv~~g~~F~~~~~~GtVyyvdq 219 (1416)
T KOG3617|consen 197 -------SGVPKGTEFLFAGKSGTVYYVDQ 219 (1416)
T ss_pred -------cCCCCCcEEEEEcCCceEEEEcC
Confidence 12356677888888898876653
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-07 Score=91.50 Aligned_cols=258 Identities=12% Similarity=0.204 Sum_probs=161.3
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCc-----eeeEecCCCC------------CeEEEEEecCCC-cEEEE
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK-----TMATFMPPPP------------AATFLAFHPQDN-NIIAI 864 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~-----~~~~~~~~~~------------~i~~l~~sp~d~-~~las 864 (1101)
....|+++.|...|.|+++|. .|.|.+|...... ....|++|.. .|..+.|..+.+ ..+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 456799999999999999999 7999999876432 1233555542 477787765333 35556
Q ss_pred EeccCeEEEEEeecce-------------------------------------Ee----e--eecCcccCeeEEEEcCCC
Q 001318 865 GMDDSSIQIYNVRVDE-------------------------------------VK----S--KLKGHSKRITGLAFSHAL 901 (1101)
Q Consensus 865 g~~dg~v~vwd~~~~~-------------------------------------~~----~--~l~~h~~~V~~l~~s~dg 901 (1101)
.+.|.+|++|.+.... .+ . .-..|.-.|+++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 6789999999874320 00 0 013466778999999998
Q ss_pred CEEEEEeCCCceEEEeCCCcccccceeeecCCCC-CCCCCCCeEEEEcCCCcEEEE--EeCCeEEEEEcCCcee------
Q 001318 902 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLEC------ 972 (1101)
Q Consensus 902 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~la~--~~d~~v~vwd~~~~~~------ 972 (1101)
..++++. |-.|.+|+++-....... +.+.... .....-|++..|+|....+.. ++.|.|++-|+.....
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnI-VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNI-VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEE-EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 8888865 677999998754322111 1111110 000124678889997654443 6889999999873211
Q ss_pred eeeccCC--------CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc-eeeeecCCCcc----cCCCCCCCCcc-ce
Q 001318 973 VKQWVPR--------ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL-KLRCRINPSAY----LPAGVSSSNVH-PL 1038 (1101)
Q Consensus 973 ~~~~~~~--------~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~----~~~~~~~~~v~-~~ 1038 (1101)
+.....+ +-...|..+.|+++|+++++-+ --+|++||+... .++.++..+.. +.+-..+..++ -.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 1111111 1245788999999999999765 458999998654 45554431110 00000111121 23
Q ss_pred EEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1039 VIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1039 ~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
.+.|+. |.+.+.+|+..+..-++-..
T Consensus 342 eisfSg-d~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 342 EISFSG-DDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred EEEecC-Ccccccccccccceeeeccc
Confidence 688888 45788888888877777643
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-07 Score=96.69 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=106.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE----EeCCeEEEEEc
Q 001318 892 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFET 967 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~----~~d~~v~vwd~ 967 (1101)
...+..++++++||.+..+....++++..... ...+........ .-+++.|..+.....+ +....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~----~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPK----RPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeeccc----CcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 34456677788888777777766776665433 222232222221 2345555555544444 24456777777
Q ss_pred CCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCC
Q 001318 968 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1047 (1101)
Q Consensus 968 ~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~ 1047 (1101)
..+.+...+ ||-..++.++||||+++++++..|..|+|-.+..-..+..+- -||..- |. .++.-+ +
T Consensus 140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc------lGH~eF-VS--~isl~~--~ 205 (390)
T KOG3914|consen 140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC------LGHKEF-VS--TISLTD--N 205 (390)
T ss_pred cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc------cccHhh-ee--eeeecc--C
Confidence 666655443 899999999999999999999999999998887655554433 244333 55 455443 5
Q ss_pred CEEEEEecCCcEEEEeccCCC
Q 001318 1048 NEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1048 ~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+.|+++|.|++|++||+.+|+
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred ceeeecCCCCcEEEEecccCC
Confidence 679999999999999999998
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.6e-06 Score=85.79 Aligned_cols=185 Identities=12% Similarity=0.151 Sum_probs=126.6
Q ss_pred EEEEecCCCEEEEEe------CCeEEEEECC-CCceeeEecCCCCCeEEEEEecCCCcEEEEEe----------------
Q 001318 810 CFALSKNDSYVMSAS------GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---------------- 866 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~---------------- 866 (1101)
.-+||+||++|++.. .|.|-|||.. +.+.+.++..+.-.--.+.+.| |++.|+++-
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 478999999999874 2679999999 7778888887766667788999 887777663
Q ss_pred --ccCeEEEEEeecceEeee--e--cCcccCeeEEEEcCCCCEEEEEeCCCc-------eEEEeCCCcccccceeeecCC
Q 001318 867 --DDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADSQ-------LCVWSSDGWEKQKNRFLQIPT 933 (1101)
Q Consensus 867 --~dg~v~vwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~~l~s~s~D~~-------v~iwd~~~~~~~~~~~~~~~~ 933 (1101)
.+-++..-|..+|+++.+ + ..|...|..+++.++|..++-.-..+. |-+++-.. . ...+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~--~~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A--LRLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c--ceeccCCh
Confidence 122455567788888877 4 348888999999999876665433321 33333222 1 11111111
Q ss_pred CC-CCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe
Q 001318 934 GR-TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT 1005 (1101)
Q Consensus 934 ~~-~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~ 1005 (1101)
.. ....+.+-+++++++|.+++++ .-+.+.+||..+++.+.... -..+..++-.+++ ++++.+ .|.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCC-Ccc
Confidence 00 0112478899999999988874 66799999999999988765 3456777777777 555544 444
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-06 Score=82.64 Aligned_cols=192 Identities=9% Similarity=-0.047 Sum_probs=129.1
Q ss_pred EEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEe-e-eecCcccCeeEEE
Q 001318 821 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVK-S-KLKGHSKRITGLA 896 (1101)
Q Consensus 821 a~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~-~-~l~~h~~~V~~l~ 896 (1101)
..++ |.++++++++-+.......-..-.+.++++++ |++++++.++...|..|.+... +.+ . ....-++.=.+..
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 3444 78888888765443333221123388999999 9999999999999999998753 222 2 2233344456789
Q ss_pred EcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCc--EEEEE-eCCeEEEEEcCCceee
Q 001318 897 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI--HFLVV-HETQLAIFETTKLECV 973 (1101)
Q Consensus 897 ~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~--~la~~-~d~~v~vwd~~~~~~~ 973 (1101)
|+.....+|++..||++.|||++.........-..... +.+.++.+.|++.|. +|..+ .-+.+.+.|+.++...
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~---hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH---HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCC---CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 99999999999999999999998743222111122222 346899999998664 33333 6678999999998765
Q ss_pred eeccCC-----CC-CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 001318 974 KQWVPR-----ES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1017 (1101)
Q Consensus 974 ~~~~~~-----~h-~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~ 1017 (1101)
..+.+. .| ...|+.-.|+.++.-+.+.+++ .+.=|++.+....
T Consensus 288 q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srsR~ 336 (344)
T KOG4532|consen 288 QVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRSRF 336 (344)
T ss_pred eEEecCccccccccccccccccccCCCcccccccch-hhheeecccccee
Confidence 544321 23 3348888999988887777655 4556776655433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-05 Score=82.79 Aligned_cols=219 Identities=14% Similarity=0.079 Sum_probs=137.0
Q ss_pred eEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec
Q 001318 809 PCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 809 ~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 886 (1101)
.+++|.+ ++.++++-- .+.|+.|+..++.... +.... ...+++...+++++++ .. +.+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEE-Ec-CceEEEecCCCcEEEEee
Confidence 4678888 555555544 7899999998865533 22122 7788888326666554 44 455666988875443332
Q ss_pred C-----cccCeeEEEEcCCCCEEEEEeCC--------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 887 G-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 887 ~-----h~~~V~~l~~s~dg~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
. .....+.+++.++|++.++.... +.|..++.. ++. ....... .....++|+||++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~~~-------~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVADGL-------GFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEEEE-------SSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEecCc-------ccccceEECCcchh
Confidence 2 34568899999999988876544 345555555 221 1111111 13478999999998
Q ss_pred EEE--EeCCeEEEEEcCCcee----eeec-cCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCccc
Q 001318 954 FLV--VHETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1026 (1101)
Q Consensus 954 la~--~~d~~v~vwd~~~~~~----~~~~-~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 1026 (1101)
|.+ +..+.|..|++..... ...+ ......+..-.+++..+|++.++....+.|.++|.+ |+++..+. +
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~----~ 222 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE----L 222 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-----
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc----C
Confidence 876 3677899998853221 1212 111212348889999999998888889999999987 99988887 4
Q ss_pred CCCCCCCCccceEEEEeCCCCCEEEEE
Q 001318 1027 PAGVSSSNVHPLVIAAHPQEPNEFALG 1053 (1101)
Q Consensus 1027 ~~~~~~~~v~~~~i~~~~~d~~~l~s~ 1053 (1101)
|. -.+.+++|...+.+.|+..
T Consensus 223 p~------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 223 PV------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SS------SSEEEEEEESTTSSEEEEE
T ss_pred CC------CCEEEEEEECCCCCEEEEE
Confidence 31 1355899964454555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-07 Score=87.89 Aligned_cols=210 Identities=12% Similarity=0.173 Sum_probs=127.4
Q ss_pred cEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc
Q 001318 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 427 (1101)
Q Consensus 348 v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 427 (1101)
|+.+.|+-+- .|+++..++.+......++.+.. .|+-.....+ ...+..|.++-.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~--~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDP--FKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCc--eeeeeccCCCCCcccccccCCceEecCC
Confidence 6666666554 58888888888887766654433 2222222211 2234455555555555667888999999
Q ss_pred CCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCeEEEEEec-----CCCcEEEEeCCCCceEEEecCcccCeEE
Q 001318 428 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEGHEAPVYS 501 (1101)
Q Consensus 428 d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 501 (1101)
||.+.+.+.+.- ++...... .|.+ -.+.+....+. .+.+++ .-+..++|+++..+.+..-..-...|.+
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 999999998762 22111111 1221 12222333444 333332 1234556665543332211122334888
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCcee-eecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
+|-+|... +.+++|+.||.+-+||++...... .+..|...+..+.|.|... ..|++++
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--------------------~~Lft~s 243 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--------------------EHLFTCS 243 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--------------------hheeEec
Confidence 99877655 688999999999999999864332 3456666777777766543 5799999
Q ss_pred CCCcEEEEECCC
Q 001318 581 DDFSIKFWDMDS 592 (1101)
Q Consensus 581 ~dg~i~iwd~~~ 592 (1101)
+||.+..||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999864
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.6e-07 Score=85.28 Aligned_cols=150 Identities=16% Similarity=0.225 Sum_probs=98.4
Q ss_pred cCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--
Q 001318 747 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-- 824 (1101)
Q Consensus 747 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-- 824 (1101)
+-.++.+++++.||.+.+++.+. .+....+. .. -...-.+.++-..++++.++.
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i---------------~~--------~~~~~as~~~~~~~~~i~s~~~g 153 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDK-DLALMSRI---------------PS--------IHSGSASRKICRHGNSILSGGCG 153 (319)
T ss_pred cccCCceEecCCCceEEEEechH-HHhhhhhc---------------cc--------ccccccccceeecccEEecCCcc
Confidence 33456689999999999887643 11000000 00 011111223334445555443
Q ss_pred ----CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe-eeecCcccCeeEEEEcC
Q 001318 825 ----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSH 899 (1101)
Q Consensus 825 ----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~-~~l~~h~~~V~~l~~s~ 899 (1101)
-+..+.|++...+....-......|++++-+|...++++.|+.||.+-+||.+..... ..+..|..+|+.+-|+|
T Consensus 154 ~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 154 NWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP 233 (319)
T ss_pred eEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC
Confidence 2446666665333222212223349999999977789999999999999999887533 45688999999999998
Q ss_pred -CCCEEEEEeCCCceEEEeCCC
Q 001318 900 -ALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 900 -dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
++..|++++.||.+.-||..+
T Consensus 234 k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCchheeEecCCCcEEEEcCCC
Confidence 568999999999999999876
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-07 Score=93.87 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=120.1
Q ss_pred EEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCce
Q 001318 362 LVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE 441 (1101)
Q Consensus 362 atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~ 441 (1101)
++.+.+-.|-+-|++||-... +. -.+.|.++.|.-.+.++..|+.+|.|...|+..+..
T Consensus 228 fs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq 286 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ 286 (425)
T ss_pred ecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc
Confidence 444556788999999886533 22 567899999999999999999999999999986411
Q ss_pred --eeeeeeeccccCCeeEEEEcC-CCCeEEEEEecCCCcEEEEeCCCCce---EEEecCcccCeEEEeeeecCCccEEEE
Q 001318 442 --VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSVCPHHKENIQFIFS 515 (1101)
Q Consensus 442 --~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~~l~s 515 (1101)
..+...+ -|...|+++..-. +++ +|++.+.+|.|++||.+--++ +.+++||.+.-.-+-++.++....+++
T Consensus 287 G~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s 363 (425)
T KOG2695|consen 287 GNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS 363 (425)
T ss_pred CCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE
Confidence 1111122 4899999998877 455 789999999999999987666 889999977666565655666678999
Q ss_pred EecCCcEEEEecCCCCceeeecCCC
Q 001318 516 TALDGKIKAWLYDNLGSRVDYEAPG 540 (1101)
Q Consensus 516 ~~~dg~i~~wd~~~~~~~~~~~~~~ 540 (1101)
++.|...|+|.++.+..+.+++.+.
T Consensus 364 ~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 364 VGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccCeeEEEEEecccCceeeccCCCC
Confidence 9999999999999887776655443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-05 Score=90.99 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=116.9
Q ss_pred EecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc---C-eEEEEEeecceEeeeec
Q 001318 813 LSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 813 ~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g-~v~vwd~~~~~~~~~l~ 886 (1101)
+++||+.+...+ .+.+.+.|.++.+...++.- .+....+++++ +++++++.+.+ | ++..-+......+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 456777665444 47788999998877776653 23456789999 88888777532 1 22222221111111110
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc-ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEE
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 963 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~ 963 (1101)
- ..+ -++.++|++...+ +++|.+.|..+..... .....++-+. ....+.+||||++++++ .+.++.
T Consensus 278 i--~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGK-----sPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 278 I--ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPK-----NPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred h--HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCC-----CccceEECCCCCEEEEeCCCCCcEE
Confidence 0 000 1334578876653 6789999988710000 1122222232 45889999999999994 678999
Q ss_pred EEEcCCcee------------eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 964 IFETTKLEC------------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 964 vwd~~~~~~------------~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
|+|+.+.+. +.+... .......+|.++|....+-..|..|..||+.+
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999988653 333322 34556789999999888889999999999987
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0002 Score=75.42 Aligned_cols=226 Identities=19% Similarity=0.200 Sum_probs=141.1
Q ss_pred EEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe-cCCCeEEEEEc
Q 001318 349 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS 427 (1101)
Q Consensus 349 ~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~ 427 (1101)
.+++|.+....|+++--..+.|..|+..+++.... ... ....+++. ++|. |+.+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~-l~v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGR-LYVADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSE-EEEEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCE-EEEEEc
Confidence 46789985445788877889999999998765431 111 27778888 5654 444555
Q ss_pred CCeEEEEEccCCceeeeeeeec--c-ccCCeeEEEEcCCCCeEEEEEecCC--------CcEEEEeCCCCceEEEecCcc
Q 001318 428 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 428 d~~i~iwd~~~~~~~~~~~~l~--~-h~~~V~~~~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
++ +.++|..+++. ..+.... . .....+.+++.++|+ +.++.... +.|..++.. ++...... ..
T Consensus 60 ~~-~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL 133 (246)
T ss_dssp TC-EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred Cc-eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence 44 55559988854 3333332 2 345789999999999 56665433 457777766 55433333 45
Q ss_pred cCeEEEeeeecCCccEE-EEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc--CceeEEEEcCCC
Q 001318 497 APVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK--RSLGVVQFDTTK 573 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~ 573 (1101)
...+.++|++ +++.| ++-+..+.|..++++.......-. +.+..... +....++++.+|
T Consensus 134 ~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 134 GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNR----------------RVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEE----------------EEEEE-SSSSCEEEEEEEBTTS
T ss_pred ccccceEECC--cchheeecccccceeEEEeccccccceeee----------------eeEEEcCCCCcCCCcceEcCCC
Confidence 5678899854 45555 466778888888886543311000 01100000 124456777777
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEe
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST 624 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 624 (1101)
+..++....+.|.+++.+ |+.+..+..... .+++++|. ++.+.|++.+
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~--~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELPVP--RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-SSS--SEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCCCC--CEEEEEEECCCCCEEEEEe
Confidence 777777789999999987 888888876522 68899994 5766666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.4e-06 Score=86.40 Aligned_cols=213 Identities=12% Similarity=0.071 Sum_probs=141.7
Q ss_pred CCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC-CCcEEEEeC
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDA 483 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~ 483 (1101)
-|.+.|+.+.-+ -.+++.+++.||.++.|.-..-.-+.-...+..|...|.+++.+-++. ++.|.+. |+.++++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEe
Confidence 467777776544 467999999999999998664222333334678999999999999998 7889777 999999999
Q ss_pred CCCceEEEec--CcccCeEEEeeeecCC-c--cEEEEEecCCcEEEEecCCCCcee--eecCCCCceeEEEEccCCceEE
Q 001318 484 TNGAKQYIFE--GHEAPVYSVCPHHKEN-I--QFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 484 ~~~~~~~~~~--~h~~~v~~v~~~~~~~-~--~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
++-..+.-++ --.+.+ +|..++. - .+-++.-.++.+.++|-....+.. .-..|..+|.
T Consensus 84 En~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~------------ 148 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVK------------ 148 (558)
T ss_pred eccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceE------------
Confidence 8765543222 122222 2222221 1 233344457889999876544322 2233444444
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC------CceeEEEcC-------CCCCCCcCeEEEccCCCEEEEE
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------VQLLTSIDA-------DGGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
++.+.+.+..+++....|.|.-|..+. .+....++. ........++.|+|+|..+.+-
T Consensus 149 ---------~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 149 ---------KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred ---------EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 444555556788888899999999873 111112211 1222346789999999999999
Q ss_pred eCCCcEEEEEecCccccccccc
Q 001318 624 TNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 624 ~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
..|..|+++...+| +.++.+.
T Consensus 220 ~~DrkVR~F~~KtG-klvqeiD 240 (558)
T KOG0882|consen 220 NPDRKVRGFVFKTG-KLVQEID 240 (558)
T ss_pred CcccEEEEEEeccc-hhhhhhh
Confidence 99999999999998 6666554
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-07 Score=105.91 Aligned_cols=199 Identities=17% Similarity=0.206 Sum_probs=144.5
Q ss_pred CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC--ce
Q 001318 836 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QL 913 (1101)
Q Consensus 836 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~--~v 913 (1101)
.+..++|..|....+|++|+. +.++|++|+-.|.|++|++.+|.......+|.++|+.+.-+.||..+.+.+.-. -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 344566777888999999999 889999999999999999999999999999999999999999998887665433 46
Q ss_pred EEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCC--CCCCCeeEEEE
Q 001318 914 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATF 990 (1101)
Q Consensus 914 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~--~h~~~i~~l~~ 990 (1101)
.+|++...- .....+ ..-.++.|+.....-+.+ ......+||+.++....++... +....-.+..|
T Consensus 1170 aLW~~~s~~----~~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTG----GPRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHhcccccc----Cccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 799987621 111111 244778888875555554 4467889999999877664321 12334478899
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 991 SCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 991 spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
||+..+++ .|| .+||+...+.+++|.....-. .=.|+| .|.-++.-+ .|||+.+-+
T Consensus 1239 sP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-----------~G~FHP-~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-----------GGGFHP-SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred CCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-----------cccccC-CCceEEeec-----hhhhhHHHH
Confidence 99999887 566 479999888887776322111 124777 456666655 577776654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.2e-05 Score=82.54 Aligned_cols=228 Identities=14% Similarity=0.062 Sum_probs=137.4
Q ss_pred CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeee
Q 001318 367 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446 (1101)
Q Consensus 367 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~ 446 (1101)
+|.|..||..+|+.+-...++ .. .....+. ..+++.++++++.++.+..||..+|+.+....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~----------------~~-~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG----------------PG-IGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS----------------SS-CSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECC----------------CC-CCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence 588999999999887653221 01 1122211 34467788888999999999999998765332
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCccc---CeEEEeeeecCCccEEEEEecCCcE
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEA---PVYSVCPHHKENIQFIFSTALDGKI 522 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~---~v~~v~~~~~~~~~~l~s~~~dg~i 522 (1101)
+.+ .+.......++. ++.++.++.++.+|..+|+.+... ..... .......... +..++.+..++.|
T Consensus 64 -~~~---~~~~~~~~~~~~---v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 64 -LPG---PISGAPVVDGGR---VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp -CSS---CGGSGEEEETTE---EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred -ccc---cccceeeecccc---cccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 222 111112223343 555567789999999999999874 32211 1111222112 4678888889999
Q ss_pred EEEecCCCCceeeecCCCCce-eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 001318 523 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 523 ~~wd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
..+|..+++.+.......... ..+.... ....-.+..++ .++.++.++.+..+|+.+++.+....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~- 200 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFS------------DINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP- 200 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEET------------TEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeec------------ccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence 999999988877665533211 1000000 01111111123 57777777764444999998765433
Q ss_pred CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 602 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 602 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
... +.. ....++..|++++.++.|..||..+++.
T Consensus 201 ~~~---~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 201 ISG---IYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CCC---ccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 211 222 2456788888888999999999999843
|
... |
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-07 Score=87.77 Aligned_cols=133 Identities=22% Similarity=0.239 Sum_probs=100.3
Q ss_pred HHHHHHHhhcCChHHHHHHhcccc-cccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhh
Q 001318 25 MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEIT 103 (1101)
Q Consensus 25 ~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~ 103 (1101)
...++++|++|+++.|++.+.... .+-.. . ..+.|.|++|+|+|||..++..+|+.+.|+.+.|......+.++++.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~-~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-N-SSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-C-CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 577899999999999999998762 22111 1 23899999999999999999999999999999776654688899999
Q ss_pred hhhcccCcch--hhhhhccCCchHHHHHHHHHHhhcccCCccccccccCCCCC-hHHHHHHHHHhHHHH
Q 001318 104 QLLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ 169 (1101)
Q Consensus 104 ~ll~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 169 (1101)
.+|...+..+ ...+..+- ....|++|.+.+.+.+-...- +| ...|+.++.+....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 9998887665 23333332 236789999998886655333 44 466888888876543
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00064 Score=66.35 Aligned_cols=147 Identities=9% Similarity=0.001 Sum_probs=96.8
Q ss_pred EEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec
Q 001318 458 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 537 (1101)
Q Consensus 458 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 537 (1101)
+...+|.+. +++.|+..+.+.--|..+|+.+..-. -...+.+-+.. -|++++.|+..|.+++.+..++++...+.
T Consensus 16 LVV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 16 LVVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred EEEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeee
Confidence 344456655 78889999999999999999876432 22334443332 12579999999999999999987776554
Q ss_pred CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC
Q 001318 538 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 617 (1101)
Q Consensus 538 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 617 (1101)
.... .-......+++..+..++.|++.+..|..+..++...+..+. ...+-++.|..
T Consensus 91 ~~~~---------------------vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~ 147 (354)
T KOG4649|consen 91 ILET---------------------VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGD 147 (354)
T ss_pred ehhh---------------------hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCC
Confidence 3221 001123456677899999999999999999999988775544 23344555623
Q ss_pred CEEEEEeCCCcEEEE
Q 001318 618 CLLAVSTNDNGIKIL 632 (1101)
Q Consensus 618 ~~l~~~~~dg~i~iw 632 (1101)
..|..+...|.+.--
T Consensus 148 ~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 148 GSLYAAITAGAVLAV 162 (354)
T ss_pred ceEEEEeccceEEEE
Confidence 334444444554433
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.9e-05 Score=77.03 Aligned_cols=205 Identities=17% Similarity=0.192 Sum_probs=129.1
Q ss_pred EEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee-cceEeee-
Q 001318 810 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKSK- 884 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~~~- 884 (1101)
.++++.||+++++.. .-.|.|.|+...+.+.++... .+..+- |..++-+.+-|.||.+.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIY--PSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEE--EEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEE--ecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 357778888887765 467999999998888877622 222222 2234557788889999988887 3544322
Q ss_pred ---ecCcccCe-eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCC----CCCCCCCCeEEEEcCCCcEEEE
Q 001318 885 ---LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 885 ---l~~h~~~V-~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
|..-..++ ..-+++.++..++-.+.+|.|+--|+................ ....++.-.-+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22112222 233445555566667788888888877655333333332210 1112245567899887766665
Q ss_pred -E---eCC-------eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC-EEEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 957 -V---HET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 957 -~---~d~-------~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
- .++ .|.+||+.+++.+..+.. ..++.+|++|.|.+ +|++.+ .++.+.|||..+|+++.++.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2 222 699999999999999875 34788999999888 555444 57899999999999998877
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.4e-07 Score=90.48 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=111.7
Q ss_pred EEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-----eEeeeecCcccCee
Q 001318 819 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLKGHSKRIT 893 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-----~~~~~l~~h~~~V~ 893 (1101)
.+++|.+-.|-+-|++++... .|. ..+.|.++.|.. .+.++..|+.+|.|.++|++.+ .+...+. |.+.|+
T Consensus 227 hfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvt 302 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVT 302 (425)
T ss_pred eecccccceeEEEEeeccccc-ccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchh
Confidence 345566788999999886543 333 566799999997 7889999999999999999864 3444444 888999
Q ss_pred EEEEcC-CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCcee
Q 001318 894 GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 972 (1101)
Q Consensus 894 ~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~ 972 (1101)
++..-. ++++|++.+.+|+|++||.+-.+... -+....||..
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN----------------------------------- 345 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVN----------------------------------- 345 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeecccc-----------------------------------
Confidence 988766 78899999999999999987632111 1222222211
Q ss_pred eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCC
Q 001318 973 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 973 ~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1022 (1101)
...-.-+.+.+....++++++|...|||.+..|.+++++..
T Consensus 346 ---------~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 346 ---------LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ---------cccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 11222233456677888899999999999999999999883
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0077 Score=70.28 Aligned_cols=594 Identities=11% Similarity=0.093 Sum_probs=290.6
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
...++..+-..|+..-++| ++.+||.-|.=.+-.+.+....... ....+ . -..-++|..++.-.+
T Consensus 300 ve~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy----------~~ile--t-~~NLgPI~Dm~Vvd~ 364 (1096)
T KOG1897|consen 300 VEYLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY----------VVILE--T-FVNLGPIVDMCVVDL 364 (1096)
T ss_pred EEecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch----------hhhhh--h-cccccceeeEEEEec
Confidence 3355666777888888888 5888988776555555443221100 00000 0 122357888877652
Q ss_pred ----CCeEEEEE---cCCeEEEEEccCCceeeeeeeeccccCCeeEEE--EcCCCCeEEEEEecCCCcEEEEeCCCCceE
Q 001318 419 ----GSLFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVITCGDDKTIKVWDATNGAKQ 489 (1101)
Q Consensus 419 ----g~~las~~---~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 489 (1101)
+..++|++ .||++++..-.-+-...-...+.| -..++.+. +.+.-.. +++.+-.+ .-++..+...-..
T Consensus 365 d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee 441 (1096)
T KOG1897|consen 365 DRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEE 441 (1096)
T ss_pred cccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEE
Confidence 23555553 589999986543322222223555 45567776 4443222 33332222 2233433222111
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
....+.......+..+ .-+++.|+=.. ...||+++-. .....+..+.+. .+...
T Consensus 442 ~~~~gf~~~~~Tif~S-~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~----------------------ti~~~ 495 (1096)
T KOG1897|consen 442 TEDPGFSTDEQTIFCS-TINGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKI----------------------TIGVV 495 (1096)
T ss_pred eccccccccCceEEEE-ccCCceEEEEe-cccEEEEcch--hhhhcccCCCce----------------------EEEEE
Confidence 1111211112222211 11222222222 2345555433 122222222221 11112
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccC--C----CEEEEEeCCCcEEEEEecCccccccc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--G----CLLAVSTNDNGIKILATSDGIRLLRT 643 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~----~~l~~~~~dg~i~iw~~~~~~~~~~~ 643 (1101)
+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.-.......+..
T Consensus 496 ~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~ 574 (1096)
T KOG1897|consen 496 SANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITH 574 (1096)
T ss_pred eecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeee
Confidence 2222346777777777777777665 333322333346889999973 2 27888887766655533222111111
Q ss_pred cccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccC-
Q 001318 644 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS- 722 (1101)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~- 722 (1101)
..-. . .+.|-. ... ..+..+..+|.++..||.+.-|.+....
T Consensus 575 ~~l~-~-----------~~iPRS-------------------Il~------~~~e~d~~yLlvalgdG~l~~fv~d~~tg 617 (1096)
T KOG1897|consen 575 EQLS-G-----------EIIPRS-------------------ILL------TTFEGDIHYLLVALGDGALLYFVLDINTG 617 (1096)
T ss_pred eccC-C-----------Cccchh-------------------eee------EEeeccceEEEEEcCCceEEEEEEEcccc
Confidence 1000 0 000000 000 0112236788899999988766654322
Q ss_pred -CCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 723 -EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 723 -~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
.....+. .-...++.--.|+..++.-+.+.+|.-..+|.- .+++....+..
T Consensus 618 ~lsd~Kk~-----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-----------------------n~kLv~spls~ 669 (1096)
T KOG1897|consen 618 QLSDRKKV-----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-----------------------NGKLVYSPLSL 669 (1096)
T ss_pred eEcccccc-----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-----------------------CCcEEEeccch
Confidence 1111100 113345555667666655555555544444432 11111100000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCce--eeEecCCCCCeEEEEEecCCCcEEEEEecc-----------
Q 001318 802 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD----------- 868 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----------- 868 (1101)
..-..+..+.-..-...++++..+.+++.-+..-+. ++++. -......+++.+ ....+++.+.-
T Consensus 670 -kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee 746 (1096)
T KOG1897|consen 670 -KEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEE 746 (1096)
T ss_pred -HHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCc
Confidence 000011111111223467777777777777654332 23333 233456666665 44444443321
Q ss_pred ---CeEEEEEeecceEeeeecC--c--ccCeeEEEEcCC-CCEEEEEeC----------CCceEEEeCCCcccccceeee
Q 001318 869 ---SSIQIYNVRVDEVKSKLKG--H--SKRITGLAFSHA-LNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQ 930 (1101)
Q Consensus 869 ---g~v~vwd~~~~~~~~~l~~--h--~~~V~~l~~s~d-g~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~ 930 (1101)
..++++|-.+.+.+...+- - .-.|.++.|..| +.++++|.. .|.|.|+.+......+...-.
T Consensus 747 ~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~ 826 (1096)
T KOG1897|consen 747 YEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET 826 (1096)
T ss_pred ceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee
Confidence 2466777666554433211 1 123555668877 777877753 356777776652221111111
Q ss_pred cCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEE-
Q 001318 931 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF- 1009 (1101)
Q Consensus 931 ~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vw- 1009 (1101)
... +.+ .+..--...++++-+..|++|+..+.+.++.-. .|..++..+...-.|..+++|..=+.|.+-
T Consensus 827 ~v~------Gav--~aL~~fngkllA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 827 VVK------GAV--YALVEFNGKLLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred eec------cce--eehhhhCCeEEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 111 112 222233334555677899999999987666543 668889999999999999999877776664
Q ss_pred -EcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1010 -SAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1010 -d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+-..|.+.-.-+ .+.| -+.+++.+-. ++.++-+..+|.+++-...+
T Consensus 897 y~~~eg~f~evAr--D~~p-------~Wmtaveil~--~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 897 YKGDEGNFEEVAR--DYNP-------NWMTAVEILD--DDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred EeccCCceEEeeh--hhCc-------cceeeEEEec--CceEEeecccccEEEEEecC
Confidence 444444443222 2222 2333666664 45667777789998887654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.5e-07 Score=63.05 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=37.1
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-05 Score=90.31 Aligned_cols=277 Identities=10% Similarity=0.132 Sum_probs=157.0
Q ss_pred ccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001318 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 817 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg 817 (1101)
...|.++.|..++..++.+...|.|.+-|..+ ...... ..-...|.+++||||+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~eiv----g~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPET----------------------LELEIV----GNVDNGISAASWSPDE 121 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccc----------------------cceeee----eeccCceEEEeecCCC
Confidence 36899999999999999999999988865432 211110 1146789999999999
Q ss_pred CEEEEEeCCeEEEEECCCCceeeEecCC-----CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeeecCcccC
Q 001318 818 SYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKR 891 (1101)
Q Consensus 818 ~~la~~sdg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~ 891 (1101)
+.++..+.+...++...+...+....-+ .+....+-|-. ....+ -| ..|...-.+.... +......-| +.
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~-~~ 197 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIEQD-DH 197 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchhhc-cC
Confidence 9999998544334444444444332211 11122222221 00000 00 0111111111100 001111112 22
Q ss_pred eeEEEEcCCCCEEEEE-----eCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE----EeCCeE
Q 001318 892 ITGLAFSHALNVLVSS-----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQL 962 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~-----s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~----~~d~~v 962 (1101)
=+.|.|--||+++|+. ...+.|+|||-+. .. +...... .+.-.+++|-|.|.++++ .+|+.|
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~L------ns~se~~--~~l~~~LsWkPsgs~iA~iq~~~sd~~I 268 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-AL------NSTSEPV--EGLQHSLSWKPSGSLIAAIQCKTSDSDI 268 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEecccc-hh------hcccCcc--cccccceeecCCCCeEeeeeecCCCCcE
Confidence 3569999999999873 2237899999873 21 1111111 123478999999999998 256679
Q ss_pred EEEEcCCceeeeeccC--CCCCCCeeEEEEcCCCCEEEE---EEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccc
Q 001318 963 AIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1037 (1101)
Q Consensus 963 ~vwd~~~~~~~~~~~~--~~h~~~i~~l~~spdg~~l~s---~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1037 (1101)
.+|.-+..+. ..+.. .....+|..++|+.++..|++ ......|++|-+.+.....+.. -..+.. .
T Consensus 269 vffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~-----~-- 338 (1265)
T KOG1920|consen 269 VFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK-----A-- 338 (1265)
T ss_pred EEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc-----c--
Confidence 9998764332 21111 122345999999999999987 4455569999988876433221 012211 1
Q ss_pred eEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1038 LVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1038 ~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
-+.|+|.....+..-..+|...+.++
T Consensus 339 -~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 339 -LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred -cccccCCCceeEEEEecCCcEEEEEE
Confidence 26777765555555556666555554
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-05 Score=88.33 Aligned_cols=222 Identities=12% Similarity=0.038 Sum_probs=137.7
Q ss_pred cCCCEEEEEe--CCeEEEEECCCCceeeEecC------C---------CCCeE-----EEEEecCCCcEEEE-EeccCeE
Q 001318 815 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP------P---------PPAAT-----FLAFHPQDNNIIAI-GMDDSSI 871 (1101)
Q Consensus 815 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~------~---------~~~i~-----~l~~sp~d~~~las-g~~dg~v 871 (1101)
.||+|+..-. +..|-..++...++-+.+.- | ...|. .+=++| ||+.+.. .-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 5888998887 45666666665554333221 1 11111 222445 5554432 2234677
Q ss_pred EEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCC---C-ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEE
Q 001318 872 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---S-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 947 (1101)
Q Consensus 872 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D---~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 947 (1101)
.+.|..+.+...++.-- +.-..+.+++||+++++.+.+ + ++..-+.. +......+... ..-++
T Consensus 218 SvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~--e~d~~vvfni~----------~iea~ 284 (635)
T PRK02888 218 TAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA--ERDWVVVFNIA----------RIEEA 284 (635)
T ss_pred EEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccc--cCceEEEEchH----------HHHHh
Confidence 77888877766655432 234567899999999888632 2 22222221 11100000000 01134
Q ss_pred cCCCcEEEEEeCCeEEEEEcCC-----ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCcee-----
Q 001318 948 HQDQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL----- 1016 (1101)
Q Consensus 948 s~dg~~la~~~d~~v~vwd~~~-----~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~----- 1016 (1101)
.++|++..+ .++.|.+.|..+ ...+..+.. ......+.+||||+++++++ .+.+|.|.|+.+.+.
T Consensus 285 vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 557887665 467899999998 345554443 56789999999999976555 588999999988653
Q ss_pred -------eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1017 -------RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1017 -------~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+.+++ + | ..|+..+|.+ +|+...+..-|..|..||+.+
T Consensus 361 ~~~~~~vvaeve----v--G-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPE----L--G-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeec----c--C-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 33333 1 2 4477899988 678889999999999999987
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-06 Score=88.08 Aligned_cols=213 Identities=13% Similarity=0.082 Sum_probs=151.3
Q ss_pred CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec---ceEeeeecCcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCC
Q 001318 845 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG 920 (1101)
Q Consensus 845 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~ 920 (1101)
|...|+.+..+ -.+++.+++-||.++.|.-.. -+.+..+..|.+.|.+++.+-||.++.|.+. |..++++|+..
T Consensus 8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 66777777666 467999999999999997543 2455667789999999999999999999887 99999999987
Q ss_pred cccccceeeecCCCCCCCCCCCeEEEEcCCC--cEEEEE--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCE
Q 001318 921 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--IHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 996 (1101)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~la~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~ 996 (1101)
-......-+..+.+ -..+..++.. ..++++ .++.+.++|-....+.....-.-|..+|.++.+++-+..
T Consensus 86 ~DminmiKL~~lPg-------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG-------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCC-------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 54332222222221 1222223321 244443 778999999877665444444568999999999999999
Q ss_pred EEEEEcCCeEEEEEcCC------ceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 997 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 997 l~s~s~dg~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+++....|.|.-|..+. +++...++....+-.- -...-.+.++.|+| ++..+.+-+.|..|+++++.+|+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF-PKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcc-cccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99999999999999873 2222222222211110 11113456899999 78999999999999999999998
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0012 Score=78.43 Aligned_cols=274 Identities=14% Similarity=0.138 Sum_probs=146.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
..+..+.|..+.+.++.+..+|.|.+-|..+......-... ..|.+++||||+..++..+..+++.+-.- +- .++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~-~f-~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTK-DF-EPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEec-cc-cch
Confidence 36777778888888999999999999988776543332222 35899999999999999998888766432 11 111
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..-.-+...-. ....+..+....-.-+.....
T Consensus 144 ~E~~L~~d~~~------------------------------------------------~sk~v~VGwGrkeTqfrgs~g 175 (1265)
T KOG1920|consen 144 AEKPLDADDER------------------------------------------------KSKFVNVGWGRKETQFRGSEG 175 (1265)
T ss_pred hcccccccccc------------------------------------------------ccccceecccccceeeecchh
Confidence 11000000000 000111111111111111000
Q ss_pred CCCccccc---cccCccccccceEEEEEcCCCceEEeee-----cCceEEeeeccccccCCCCceeeeecCccccCCCcc
Q 001318 722 SEPNQCRS---LRLPENLRATKISRLIFTNSGNAILALA-----SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 793 (1101)
Q Consensus 722 ~~~~~~~~---~~~~~~~~~~~i~~l~~s~~g~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~ 793 (1101)
.....-.. -..........=+++.|-.||.++++.. ....|++||-. |.
T Consensus 176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------------------g~ 232 (1265)
T KOG1920|consen 176 RQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------------------GA 232 (1265)
T ss_pred hhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------------------ch
Confidence 00000000 0000001223345789999999888733 22788888753 11
Q ss_pred ccccccCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEECCCCc---eeeEecCCCCCeEEEEEecCCCcEEEE--
Q 001318 794 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMTFK---TMATFMPPPPAATFLAFHPQDNNIIAI-- 864 (1101)
Q Consensus 794 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s----dg~i~vwd~~~~~---~~~~~~~~~~~i~~l~~sp~d~~~las-- 864 (1101)
+-.... ...+.-.+++|-|.|..+++-. |+.|.+|.....+ ..-.+.....++..++|+. ++.+||+
T Consensus 233 Lns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~ 308 (1265)
T KOG1920|consen 233 LNSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVT 308 (1265)
T ss_pred hhcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeee
Confidence 110000 0223345789999999999863 5679999865321 1122333344589999999 8999998
Q ss_pred -EeccCeEEEEEeecce--EeeeecCcccCeeEEEEcCCC-CEEEEEeCCCceEEEe
Q 001318 865 -GMDDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWS 917 (1101)
Q Consensus 865 -g~~dg~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~dg-~~l~s~s~D~~v~iwd 917 (1101)
......|++|-+.+.. +.+.+.-..... +.|+|-. ..|..-..+|...+++
T Consensus 309 ~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 309 SNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred cccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEE
Confidence 4555569999987642 223333222222 6677632 2233333455444444
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.1e-06 Score=93.56 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=133.0
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 444566666 778889999988887776655555665554 5689999999999999999999999999999999987
Q ss_pred EEEcCCCCEEEEEeC---------CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC--CcEEEEEeCCeEE
Q 001318 895 LAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLA 963 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~---------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~d~~v~ 963 (1101)
+.. .|+.|+++|. |..|+|||++.-+.. .+++...+ ..-+.|.|. .+.++++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcccccC-------chhhhhcccccceEEEEeccccee
Confidence 666 6889999886 566899999884432 23333332 245677775 3334447888999
Q ss_pred EEEcCCce-e-eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEE
Q 001318 964 IFETTKLE-C-VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 964 vwd~~~~~-~-~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
+-|..+.. . ............+..+++|++|..|+.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88843321 1 11111123355699999999999999999999999997
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-05 Score=90.63 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=133.2
Q ss_pred CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccc
Q 001318 847 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 926 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~ 926 (1101)
..++|++++ +++++-|+.+|.|++++.. +.. .+...|+.. ..+|.+++||+.||+|.|-.+-+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 457777776 4799999999999999975 333 444446554 56899999999999999999887653221
Q ss_pred eeeecCCCCCCCCCCCeEEEEcCC-----CcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE
Q 001318 927 RFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1001 (1101)
Q Consensus 927 ~~~~~~~~~~~~~~~v~~~~~s~d-----g~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s 1001 (1101)
.-.. .++.+++++|| .+.+++|+...+.++.-.-.............++|.++.| .|.++|-++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 1111 26789999998 5667775444477776443322222222344789999999 588999887
Q ss_pred cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCC
Q 001318 1002 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1002 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
++| |+|||..+++.+..+++....+ ....++-.+.|.+ ...|+.| .--+|+|..++.+
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD--EDRLVIG-WGDSVKICSIKKR 235 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCC----CcccCCCceEecC--CCeEEEe-cCCeEEEEEEecc
Confidence 665 9999999999998887544222 3335556788886 3466665 5667888888733
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0019 Score=63.09 Aligned_cols=145 Identities=11% Similarity=0.085 Sum_probs=95.5
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCe
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 430 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 430 (1101)
+..-+|.+.+++.|+..+.+.--|..+|+..-... + ...|.+-+.- -|++++.|+..|.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGG 74 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCc
Confidence 34456667789999999999999999998765311 1 1233332222 4788999999999
Q ss_pred EEEEEccCCceeeeeeeeccccCCee-EEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCC
Q 001318 431 VQIYSYHGGDEVRQHLEIDAHVGGVN-DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 509 (1101)
Q Consensus 431 i~iwd~~~~~~~~~~~~l~~h~~~V~-~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~ 509 (1101)
+++-+.++|.....+..+. .|. .....+++. ++..|+.|++.+.-|.++..++...+--.+...+-++.+ .+
T Consensus 75 lYfl~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~-g~ 147 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP-GD 147 (354)
T ss_pred EEEEEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecC-CC
Confidence 9999999997665443332 221 223455777 799999999999999999999988764333222223322 13
Q ss_pred ccEEEEEecCCcEEE
Q 001318 510 IQFIFSTALDGKIKA 524 (1101)
Q Consensus 510 ~~~l~s~~~dg~i~~ 524 (1101)
+ .|+.+...|.+.-
T Consensus 148 ~-sly~a~t~G~vla 161 (354)
T KOG4649|consen 148 G-SLYAAITAGAVLA 161 (354)
T ss_pred c-eEEEEeccceEEE
Confidence 2 3444444455443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.4e-05 Score=78.23 Aligned_cols=222 Identities=14% Similarity=0.188 Sum_probs=130.6
Q ss_pred cccCCCCCeEEEEEecCCC-eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
++.+|...|..++|||..+ +|..++.+..|+|.|+++...+. .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 6889999999999999776 78889999999999999976554 34555 89999999999876 8899999999999
Q ss_pred EeCCCCce-EEEecC--cccCeEEEeeee----cCCccEEEEEecCCcEEEEecCCCCc----eeeecCCCCceeEEEEc
Q 001318 481 WDATNGAK-QYIFEG--HEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYS 549 (1101)
Q Consensus 481 wd~~~~~~-~~~~~~--h~~~v~~v~~~~----~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s 549 (1101)
+|++..+- +..+.+ ...+|..++..+ .+.|-+++.... .+.+|++..... ...+.. .+.+.++.+.
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~-pG~cismqy~ 339 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEP-PGICISMQYH 339 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCC-Ccceeeeeec
Confidence 99986542 222222 223343332111 011223333332 244565543211 111111 1122222222
Q ss_pred c----------------------------CCceEEe------ccccCc---eeEEEEcCCCCEEEE-EeCCCcEEEEECC
Q 001318 550 A----------------------------DGTRTYQ------GFRKRS---LGVVQFDTTKNRFLA-AGDDFSIKFWDMD 591 (1101)
Q Consensus 550 ~----------------------------~~~~~~~------~~~~~~---~~~~~~~~~~~~l~~-~~~dg~i~iwd~~ 591 (1101)
+ +|..+.. |..... -..+.-.++.++++. ++..+.+.+||..
T Consensus 340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~ 419 (463)
T KOG1645|consen 340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH 419 (463)
T ss_pred CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence 2 1111110 100000 011222334455554 5567889999999
Q ss_pred CCceeEEEcCCCCCCCcCeEEEcc-C-CCEEEEEeCCCcEEEEEec
Q 001318 592 SVQLLTSIDADGGLPASPRIRFNK-D-GCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 592 ~~~~~~~~~~~~~~~~v~~~~~s~-~-~~~l~~~~~dg~i~iw~~~ 635 (1101)
+++.++++.... +|.+++... + +.+|++-+ |..++||..+
T Consensus 420 s~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 420 SFEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hhheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 999999997653 465555544 3 34565554 5688888654
|
|
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=98.23 E-value=9e-07 Score=68.43 Aligned_cols=53 Identities=32% Similarity=0.518 Sum_probs=42.8
Q ss_pred cHHHHHHHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCH
Q 001318 24 NMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 77 (1101)
Q Consensus 24 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~ 77 (1101)
++..++++|++|+|++|++.+...........+ .+.|.|++|+|+|||+.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 377899999999999999999887433222222 49999999999999998765
|
Alpha-helical motif of unknown function. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.2e-05 Score=84.91 Aligned_cols=203 Identities=14% Similarity=0.159 Sum_probs=129.6
Q ss_pred EEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccC-eeEEEEcCCCCEEEEEeCCCc-----eEEEeCCCccccc-
Q 001318 853 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK- 925 (1101)
Q Consensus 853 ~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s~s~D~~-----v~iwd~~~~~~~~- 925 (1101)
+|++ ++..+|.|+.+|.|.+++ .+.+.+..++++... |..+....+..+|++.+.|+. |+||+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 778999999999999887 345666778888777 555555445578999888765 8999998754333
Q ss_pred ceee---ecCCCCCC-CCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCC--ceeeeeccCCCCCCCeeEEEEcCCCCEEE
Q 001318 926 NRFL---QIPTGRTP-TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVY 998 (1101)
Q Consensus 926 ~~~~---~~~~~~~~-~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~--~~~~~~~~~~~h~~~i~~l~~spdg~~l~ 998 (1101)
..++ .+.....+ .+.++..++.|.+-+.+|+| .+|.|..+.-+- .+-.+....+....+|+.++|..|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2333 22221111 23578899999999999997 788888875322 11112211122378999999999999844
Q ss_pred EEEcCCeEEEEEcCCcee-eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 999 ACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 999 s~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
-+..-..|.+|.+....+ ++.+. +++..+. +.+|++..+. +++++ +..|.+++....+.
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld--------~~G~~ln--Css~~~~t~q-fIca~-~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD--------NNGISLN--CSSFSDGTYQ-FICAG-SEFLYFYDSDGRGP 247 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec--------cCCccce--eeecCCCCcc-EEEec-CceEEEEcCCCcce
Confidence 444566899999984331 22222 1222244 7777764332 43333 56788888875543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.6e-06 Score=58.84 Aligned_cols=39 Identities=28% Similarity=0.506 Sum_probs=36.6
Q ss_pred CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 836 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 836 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
++++.++.+|...|++++|+| ++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0012 Score=76.89 Aligned_cols=211 Identities=12% Similarity=0.087 Sum_probs=116.5
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeecc---ccCCe--eEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA---HVGGV--NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 493 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~---h~~~V--~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 493 (1101)
+..+..++.++.|.-.|..+|+.+-....-.. +...+ ..++.. ++. .++.++.++.|.-+|.++|+.+..+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence 55677777889999999999886543211110 00011 011221 213 47778889999999999999998775
Q ss_pred CcccC-----eE-EEeeeecCCccEEEEEe---------cCCcEEEEecCCCCceeeecCCCCceeEEE-EccCCceEEe
Q 001318 494 GHEAP-----VY-SVCPHHKENIQFIFSTA---------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMA-YSADGTRTYQ 557 (1101)
Q Consensus 494 ~h~~~-----v~-~v~~~~~~~~~~l~s~~---------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~~~ 557 (1101)
..... +. +..+ .. .+++.++ .+|.+..+|..+++....+........... +.... ...
T Consensus 138 ~~~~~~~~~~i~ssP~v--~~--~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~-~~~- 211 (488)
T cd00216 138 NNDQVPPGYTMTGAPTI--VK--KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR-QMW- 211 (488)
T ss_pred CCCCcCcceEecCCCEE--EC--CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc-cee-
Confidence 43221 11 1111 11 3455543 367889999999888877654321110000 00000 000
Q ss_pred ccccC-ceeEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCceeEEEcCCCCCC----CcCeEEEc
Q 001318 558 GFRKR-SLGVVQFDTTKNRFLAAGDDF------------------SIKFWDMDSVQLLTSIDADGGLP----ASPRIRFN 614 (1101)
Q Consensus 558 ~~~~~-~~~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~s 614 (1101)
+.... ......+++.+..++.++.++ .|.-+|+.+|+.+..++...+.. ......+.
T Consensus 212 ~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~ 291 (488)
T cd00216 212 GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLA 291 (488)
T ss_pred cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEE
Confidence 00001 112345555566777776554 79999999999988876322210 00111111
Q ss_pred ----cCCC---EEEEEeCCCcEEEEEecCcc
Q 001318 615 ----KDGC---LLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 615 ----~~~~---~l~~~~~dg~i~iw~~~~~~ 638 (1101)
-++. .+++++.+|.+...|..+|+
T Consensus 292 ~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 292 DIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred eccccCCCeeEEEEEECCCceEEEEECCCCc
Confidence 1333 57778888888888888883
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0076 Score=67.07 Aligned_cols=104 Identities=16% Similarity=0.276 Sum_probs=63.7
Q ss_pred ecCCCeEEEEE--------ecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 354 HPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 354 spdg~~llatg--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
|||++++|+.- +..+.+.|||+.+++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78999866632 223678899999876543 22225688999999999999988
Q ss_pred EcCCeEEEEEccCCceeeeeeeecc-------c---------cCCeeEEEEcCCCCeEEEEEe-cCCCcEEEEe
Q 001318 426 YSRHIVQIYSYHGGDEVRQHLEIDA-------H---------VGGVNDIAFSHPNKQLCVITC-GDDKTIKVWD 482 (1101)
Q Consensus 426 ~~d~~i~iwd~~~~~~~~~~~~l~~-------h---------~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd 482 (1101)
. ++.|.+++..++...+. +..| - -+.-..+-||||+++ |+.. -++..|..+.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP 129 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE
Confidence 6 57899999888754432 1222 0 122356889999996 4333 3344444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.002 Score=74.89 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=93.6
Q ss_pred EEEecCCCcEEEEEeccC------------------eEEEEEeecceEeeeecC--ccc----CeeEEEEc----CCCC-
Q 001318 852 LAFHPQDNNIIAIGMDDS------------------SIQIYNVRVDEVKSKLKG--HSK----RITGLAFS----HALN- 902 (1101)
Q Consensus 852 l~~sp~d~~~lasg~~dg------------------~v~vwd~~~~~~~~~l~~--h~~----~V~~l~~s----~dg~- 902 (1101)
.++.+ .+.+++.++.++ .|.-+|..+|+.+-..+. |.. ......+. -+|.
T Consensus 222 pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 222 PTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred eeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 45555 455677776665 799999999988866532 210 00011111 1343
Q ss_pred --EEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE------------------EeCCeE
Q 001318 903 --VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV------------------VHETQL 962 (1101)
Q Consensus 903 --~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~------------------~~d~~v 962 (1101)
.++.++.+|.+...|..+|+..-...... ..++.+| +..++. ..++.+
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeec-----------cccccCC-ceEEEccccccccCcccccCCCCCCCceEE
Confidence 57778889999999999987644332210 1122233 211111 135678
Q ss_pred EEEEcCCceeeeeccCCCCC------CCe--eEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 963 AIFETTKLECVKQWVPRESS------API--THATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 963 ~vwd~~~~~~~~~~~~~~h~------~~i--~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.-.|+.+|+.+-......+. .+. ..+.. .+.+|++++.||.|+.+|..+|+.+-+.+
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 88888888876655432111 111 12222 56788889999999999999999998877
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00051 Score=76.71 Aligned_cols=156 Identities=12% Similarity=0.127 Sum_probs=90.8
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..+....++++..++++++..|.|.++-++. ...++-.. .. .....|...|++++|++|++
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~----------------~t--~~d~~~~~rVTal~Ws~~~~ 137 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDY----------------VT--PCDKSHKCRVTALEWSKNGM 137 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCccee----------------ec--cccccCCceEEEEEeccccc
Confidence 4556677888888888888889998887654 11111111 11 11122788999999999999
Q ss_pred EEEEEe-CCeEEEEECCCC----ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE--eeeecCccc-
Q 001318 819 YVMSAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSK- 890 (1101)
Q Consensus 819 ~la~~s-dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~--~~~l~~h~~- 890 (1101)
.+++|. .|+|.+-.+.+. -..+.+......|..+.+.. +.+|++...- -.+++.+.++. +.+-. ..+
T Consensus 138 k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~r--~~Lc~tE~eti~QIG~k~-R~~~ 212 (726)
T KOG3621|consen 138 KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLTR--CILCQTEAETITQIGKKP-RKSL 212 (726)
T ss_pred EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhhh--hheeecchhHHHHhcCCC-cCCc
Confidence 999999 699888887762 11223333466788887763 5555543322 23444443321 11111 111
Q ss_pred CeeEEEEcCC----CCEEEEEeCCCceEEEeCC
Q 001318 891 RITGLAFSHA----LNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 891 ~V~~l~~s~d----g~~l~s~s~D~~v~iwd~~ 919 (1101)
.-.+.+|-|. .+-.+.++.=| .|+|.++
T Consensus 213 ~~~GACF~~g~~~~q~~~IycaRPG-~RlWead 244 (726)
T KOG3621|consen 213 IDFGACFFPGQCKAQKPQIYCARPG-LRLWEAD 244 (726)
T ss_pred cccceEEeeccccCCCceEEEecCC-CceEEee
Confidence 1234455543 33445555555 7888765
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00053 Score=76.28 Aligned_cols=289 Identities=13% Similarity=0.126 Sum_probs=145.8
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 582 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
.+.+.+||+.+++....... ...+....|||+|+.++... ++.|.+++..++....-+..+ ...
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~----------- 85 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPG----------- 85 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTT-----------
T ss_pred ceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-cee-----------
Confidence 46799999999765544332 23578899999999999886 578999987666221111111 000
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
+..|-.| |-.++ + --..-
T Consensus 86 ------------------------------------------i~nG~~d-----wvyeE-----E----------v~~~~ 103 (353)
T PF00930_consen 86 ------------------------------------------IYNGVPD-----WVYEE-----E----------VFDRR 103 (353)
T ss_dssp ------------------------------------------EEESB-------HHHHH-----H----------TSSSS
T ss_pred ------------------------------------------EEcCccc-----eeccc-----c----------ccccc
Confidence 0000000 00000 0 00111
Q ss_pred EEEEEcCCCceEEeeecC-ceEEeeecccc-------------ccCCCCceeeeecCccccCCCccccccccC--CCCCC
Q 001318 742 SRLIFTNSGNAILALASN-AIHLLWKWQRT-------------ERNSSGKATASVAPQLWQPPSGIMMTNDVT--DSNPE 805 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~-------------~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~--~~~~~ 805 (1101)
..+-|||||+.|+....| ..+..+.+..- .....|.......+.++++.++........ .....
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~ 183 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD 183 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence 345666666666655543 33333322111 011222233344556677777765332221 01235
Q ss_pred CCeeEEEEecCCCEEEEE-e--C---CeEEEEECCCCceeeEecC-CCC---CeEEEEEe-cCCCcEEEEEeccCeEEEE
Q 001318 806 EAVPCFALSKNDSYVMSA-S--G---GKISLFNMMTFKTMATFMP-PPP---AATFLAFH-PQDNNIIAIGMDDSSIQIY 874 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~-s--d---g~i~vwd~~~~~~~~~~~~-~~~---~i~~l~~s-p~d~~~lasg~~dg~v~vw 874 (1101)
.-+..+.|+++++.|+.. . + -.+.++|..++.+...... ... .-....|. ++++.+|.....||.-+||
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 568889999999944443 2 2 2377888877655433321 122 22355555 6567777777788855555
Q ss_pred --EeecceEeeeecCcccCeeE-EEEcCCCCEEE-EEeCC--CceEEEeCCCcccccceeeecCCCCCCCCCCC-eEEEE
Q 001318 875 --NVRVDEVKSKLKGHSKRITG-LAFSHALNVLV-SSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-TRVQF 947 (1101)
Q Consensus 875 --d~~~~~~~~~l~~h~~~V~~-l~~s~dg~~l~-s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~ 947 (1101)
+...+. ...+....-.|+. +.++++++.|. ++..+ ..-.+|.+.........++.... .. ..+.|
T Consensus 264 ~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-------~~~~~~~~ 335 (353)
T PF00930_consen 264 LYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-------GDHYSASF 335 (353)
T ss_dssp EEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-------STTEEEEE
T ss_pred EEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-------CCceEEEE
Confidence 444444 4455555566755 67788877665 45442 23445544332011122222221 22 58999
Q ss_pred cCCCcEEEE
Q 001318 948 HQDQIHFLV 956 (1101)
Q Consensus 948 s~dg~~la~ 956 (1101)
||+|++++.
T Consensus 336 Spdg~y~v~ 344 (353)
T PF00930_consen 336 SPDGKYYVD 344 (353)
T ss_dssp -TTSSEEEE
T ss_pred CCCCCEEEE
Confidence 999999887
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0027 Score=67.87 Aligned_cols=286 Identities=15% Similarity=0.088 Sum_probs=136.1
Q ss_pred EEEcCCCceEEeeec-CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEE
Q 001318 744 LIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 822 (1101)
Q Consensus 744 l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 822 (1101)
=+|.+||+.|+.++. +|.-.+|-+ |++++...+.. .. .........++++++.++.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QLT--dg-~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQLT--DG-PGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----S-S-B-TTT-EE-TTSSEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEECc--cC-CCCCccceEEecCCCeEEE
Confidence 467889987776665 555555543 44555544321 11 1112224667788888776
Q ss_pred Ee-CCeEEEEECCCCceeeEecCCCCCeEEEEEec-CCCcEEEEEec----------------------cCeEEEEEeec
Q 001318 823 AS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP-QDNNIIAIGMD----------------------DSSIQIYNVRV 878 (1101)
Q Consensus 823 ~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp-~d~~~lasg~~----------------------dg~v~vwd~~~ 878 (1101)
.. +..|+-.|+.+.+....+.-....+-...|.. .|+..++-.-. ...|.--|+.+
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 65 57899999999876666655566555555542 24555442211 12455556666
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeC----CCc-eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA----DSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~----D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
|+....+. -..-+..+.|||....+++=+. |.. -|||-+++.......+.+... ...+..=-|.|||..
T Consensus 178 G~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 178 GERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGST 251 (386)
T ss_dssp --EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS-
T ss_pred CceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCCE
Confidence 66444333 3455778999997655555433 332 377766543222211111111 135567789999998
Q ss_pred EEE-Ee-----CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC----------------eEEEEEc
Q 001318 954 FLV-VH-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVFSA 1011 (1101)
Q Consensus 954 la~-~~-----d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg----------------~v~vwd~ 1011 (1101)
+.. +. +..|.-+|+.+++...... ......+..++||++++-=+.|. -|+++++
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~ 327 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV 327 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred EEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence 876 32 3367788898886644322 22455677789999887544432 4677888
Q ss_pred CCceeee--ecCCCcccCCCCCCCCccceEEEEeCCCCCE-EEEEecCCcEEEEecc
Q 001318 1012 ANLKLRC--RINPSAYLPAGVSSSNVHPLVIAAHPQEPNE-FALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1012 ~~~~~~~--~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~-l~s~~~dg~v~vW~~~ 1065 (1101)
..++... +...+-..-.|+ .. +.---..|+|+ +++ |.+....|...|+-++
T Consensus 328 ~~~~~~~l~~h~~sw~v~~~~-~q-~~hPhp~FSPD-gk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 328 EAGRFRKLARHDTSWKVLDGD-RQ-VTHPHPSFSPD-GKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTTEEEEEEE-------BTTB-SS-TT----EE-TT-SSEEEEEE-TTSS-EEEEEE
T ss_pred ccCceeeeeeccCcceeecCC-Cc-cCCCCCccCCC-CCEEEEECCCCCCccEEEEe
Confidence 8776532 211000011111 00 11124899995 555 5566667766666543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00073 Score=74.74 Aligned_cols=281 Identities=12% Similarity=0.167 Sum_probs=141.9
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeee------------ecCccccC--------CCcccccccc
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS------------VAPQLWQP--------PSGIMMTNDV 799 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------------~~~~lw~~--------~~g~~~~~~~ 799 (1101)
.|+.+.|+++..-|+++...|.+.||.+.............. ..-.+-|+ ..|.+....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 578999999988899999999999999876544320000000 01111111 1232222222
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEe--cC------CCCCeEEEEEec----CCC---cEEE
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF--MP------PPPAATFLAFHP----QDN---NIIA 863 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~--~~------~~~~i~~l~~sp----~d~---~~la 863 (1101)
.. ..+.|++++.| |=-++|+|. +|.+.|.|++....+..- .. ....++++.|+- +|+ -.|.
T Consensus 83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22 47899999997 555999999 899999999887766552 22 234588888872 122 4788
Q ss_pred EEeccCeEEEEEeec---ceEeeee----cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccccee--ee-cCC
Q 001318 864 IGMDDSSIQIYNVRV---DEVKSKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQ-IPT 933 (1101)
Q Consensus 864 sg~~dg~v~vwd~~~---~~~~~~l----~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~-~~~ 933 (1101)
+|++.|.+.+|.+.- +.....+ ..+.++|..+ ...+.++++...... ++ ...
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I------------------~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSI------------------IPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EE------------------EEEETTT--B-B-BHHHHHGGGG
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEE------------------EEEECCCCCcccCchhHhhcccc
Confidence 899999999998752 1111111 1222233222 222333332211110 00 001
Q ss_pred CCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEc-----CCCCEEEEEEcCCeEEE
Q 001318 934 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCV 1008 (1101)
Q Consensus 934 ~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~s-----pdg~~l~s~s~dg~v~v 1008 (1101)
+. . ...+++++.+..++++...+.+...... ...-....+++- ..+..|++-..+|.|++
T Consensus 222 g~-----~--------i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 222 GI-----S--------IPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp T-----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred CC-----C--------cCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 10 0 1225666889999999999887766544 112233344552 35667889999999999
Q ss_pred EEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1009 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1009 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
|.+...+.+..+....... ..... ..++++ +|+.++-.+. ..+.++.+
T Consensus 287 ~SLP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 287 YSLPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-SS-SEEEEEEE
T ss_pred EECCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEeCc-ccEEEEEE
Confidence 9999999998777321110 11122 455666 6777666653 34344433
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0013 Score=68.88 Aligned_cols=243 Identities=13% Similarity=0.152 Sum_probs=141.7
Q ss_pred eeEEEEecCCCEEEEEe-----------CCeEEEEECCCCceeeEecCCCC-------CeEEEEEecCCCcEEEEEe--c
Q 001318 808 VPCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM--D 867 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg~--~ 867 (1101)
.-.+.++||++.+++++ ...|.+||..+.....++.-... .....+++. |++++.+.. -
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TP 116 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTP 116 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T-TSSEEEEEEESS
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEcc-CCcEEEEEccCC
Confidence 44578899999988753 12399999999887775432221 223467777 777776643 3
Q ss_pred cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC-CcccccceeeecCCCCCCCCCCCeEEE
Q 001318 868 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 868 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
--.|.|-|+..++.+..+.-- .+..+--+. .+-+.+.+.||++.-..++ .|+.. ...-..+..... .-...-+
T Consensus 117 a~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~d--p~f~~~~ 190 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTP--GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDD--PLFEHPA 190 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGT--SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS---B-S--E
T ss_pred CCeEEEEECCCCceeeeecCC--CEEEEEecC-CCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCc--ccccccc
Confidence 357888888888877766522 122222222 2457788889999988887 34332 222222222111 1223344
Q ss_pred EcC-CCcEEEEEeCCeEEEEEcCCceee--eeccCC------CC--CCCeeEEEEcCCCCEEEEEEcCC----------e
Q 001318 947 FHQ-DQIHFLVVHETQLAIFETTKLECV--KQWVPR------ES--SAPITHATFSCDSQLVYACFLDA----------T 1005 (1101)
Q Consensus 947 ~s~-dg~~la~~~d~~v~vwd~~~~~~~--~~~~~~------~h--~~~i~~l~~spdg~~l~s~s~dg----------~ 1005 (1101)
++. ++.++.++.+|.|+--|+...... ..|..- .+ .+...-+++.+....|++-...| .
T Consensus 191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 191 YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred eECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 444 445666788888888887655321 122110 00 23345577877665555443221 4
Q ss_pred EEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE-ecCCcEEEEeccCCC
Q 001318 1006 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1006 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~-~~dg~v~vW~~~~~~ 1068 (1101)
|.++|+.+++.+.++. +.+. +. +|+.+.++..+|++. ..++.|.+||..+|+
T Consensus 271 VWv~D~~t~krv~Ri~----l~~~-----~~--Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIP----LEHP-----ID--SIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEETTTTEEEEEEE----EEEE-----ES--EEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEECCCCeEEEEEe----CCCc-----cc--eEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 8899999999999987 3221 33 677777665577654 458999999999998
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00047 Score=76.99 Aligned_cols=121 Identities=10% Similarity=0.024 Sum_probs=94.8
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
|...|.--+++-.+++ ++.|+.-|.+++|+-.+++.+.. ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 4556667778888886 99999999999999888876542 1233556778888999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeee---eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~---l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
+|+..|.|.++-+..+........ -..|...|++++|++|+. .+.+|...|.|..-.+.+
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence 999999999998877443222111 123778999999999999 699999999998888776
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0001 Score=84.06 Aligned_cols=184 Identities=11% Similarity=0.132 Sum_probs=129.2
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 497 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 497 (1101)
++..++-|+-...+..+|+.+.+..+.. .-....|.-|.. +++ ++.+|...|+|.+-|..+-+.++++..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~---~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTT---NVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeee---eccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 4566777888888999999988765522 222334555554 566 799999999999999999999999999999
Q ss_pred CeEEEeeeecCCccEEEEEec---------CCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
.|..+.. .|++|++++. |.-|++||++..+.+.-+..+.++ . .+.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~---------------------flr 272 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-Q---------------------FLR 272 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-h---------------------hhh
Confidence 9987753 4468888875 556899999987665443333221 1 122
Q ss_pred EcCC-CCEEEEEeCCCcEEEEECCC-Cce-eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 569 FDTT-KNRFLAAGDDFSIKFWDMDS-VQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 569 ~~~~-~~~l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
|+|. ...+++++..|...+-|..+ +.+ ...+..+.....+..+.++++|..++.|..+|.|.+|.-
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 3332 14577888889998888322 111 222222222335888999999999999999999999973
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0018 Score=66.31 Aligned_cols=217 Identities=10% Similarity=0.084 Sum_probs=119.0
Q ss_pred eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCc-ccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 840 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 840 ~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+.+.+-...+..++|.|+++.++|+....+.|..++. +|+.++++.-. .+..-+|++..++.++++--.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3455666679999999966778888999999998886 47777776432 345788999988888887767899999998
Q ss_pred CCccc--ccc--eeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCC---ceeeee-----cc-CCCCCCC
Q 001318 919 DGWEK--QKN--RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQ-----WV-PRESSAP 984 (1101)
Q Consensus 919 ~~~~~--~~~--~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~---~~~~~~-----~~-~~~h~~~ 984 (1101)
..... ... ..+... -.......+..++|++.+..|.++ ...-..+|.+.. ...+.. +. .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~-~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLG-FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE----S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecc-cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 44221 111 111111 111222468999999987777765 444456666543 111111 11 1123556
Q ss_pred eeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEE
Q 001318 985 ITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 985 i~~l~~spd-g~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW 1062 (1101)
+.++++.|. |.+++.......|.++| .+|+.+..+....-.+ |-....-.+-.|+|.+ +|+ |...++-+..+++
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CCC-EEEEcCCceEEEe
Confidence 899999985 55677777888899999 7788877666322111 1011223466899998 664 5555566655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00022 Score=73.83 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=134.1
Q ss_pred EEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCC-CEEEE
Q 001318 828 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVS 906 (1101)
Q Consensus 828 i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg-~~l~s 906 (1101)
+++.+..+.+...-+.++...|..++|||...-++..++.+..|.|.|+++..++..+..| ..+++++|.-|. .+|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 7777777776666677788889999999944448999999999999999999999998888 789999998765 55666
Q ss_pred EeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE------EcCCCcEEEEEeCCeEEEEEcCCc--eeeeeccC
Q 001318 907 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ------FHQDQIHFLVVHETQLAIFETTKL--ECVKQWVP 978 (1101)
Q Consensus 907 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~s~dg~~la~~~d~~v~vwd~~~~--~~~~~~~~ 978 (1101)
|...|.|.|||++..+...........- .+|..++ ..+.|.+|+.+ --.+..|+.... ........
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~-----~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTI-----NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhcc-----CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCccccc
Confidence 7788999999998755322221110110 1333332 22334444432 122344544321 11111111
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEE-cCC------eEEE-EEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001318 979 RESSAPITHATFSCDSQLVYACF-LDA------TVCV-FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1050 (1101)
Q Consensus 979 ~~h~~~i~~l~~spdg~~l~s~s-~dg------~v~v-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l 1050 (1101)
+..+...++++.+-.+.++... .+- .|-+ -|..+|..++..+...+ .+.... +...-..+.+.|.+++
T Consensus 328 -e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~--Gs~~~k-l~t~~ai~~~~~nn~i 403 (463)
T KOG1645|consen 328 -EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF--GSKQTK-LSTTQAIRAVEDNNYI 403 (463)
T ss_pred -CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc--CCcccc-cccccceeccccccEE
Confidence 2244556666655445444332 211 1111 24456777765553332 111111 1111223333344554
Q ss_pred -EEEecCCcEEEEeccCCC
Q 001318 1051 -ALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1051 -~s~~~dg~v~vW~~~~~~ 1068 (1101)
..|...+.+.+||+.+.+
T Consensus 404 v~~gd~tn~lil~D~~s~e 422 (463)
T KOG1645|consen 404 VVVGDSTNELILQDPHSFE 422 (463)
T ss_pred EEecCCcceeEEeccchhh
Confidence 456666899999999888
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00033 Score=79.78 Aligned_cols=203 Identities=13% Similarity=0.174 Sum_probs=138.0
Q ss_pred EEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCC-eEEEEEecCCCcEEEEEeccC-----eEEEEEeecc----
Q 001318 811 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD---- 879 (1101)
Q Consensus 811 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~---- 879 (1101)
-++++.+..+|.|+ +|.|.+.+- ..+.++.++.+... |..+-... +..+|++-+.|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 46778888999999 899988884 34555777777766 44444443 556787777665 5999999742
Q ss_pred --eEee--eecC-----cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 880 --EVKS--KLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 880 --~~~~--~l~~-----h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
.++. .+.. ...++.+++.|.+-+.+|.|-.||.|..+.=+--.....+..-...+. .+|+.++|-.+
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 2331 1222 346788999999999999999999998885433222222222222222 58999999999
Q ss_pred CcE-EEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 951 QIH-FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 951 g~~-la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
++. +.++.-.+|.+|.+.... ...-..+.|...+.|-+|++...-+++++ +..|.+|+.+.......+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 987 555777889999998444 33322457788999999987555355554 5679999987555544444
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.8e-05 Score=73.88 Aligned_cols=152 Identities=18% Similarity=0.267 Sum_probs=104.9
Q ss_pred chhHHHHHHHH-------------HhHhcCcccc---------HHHHHHHhhcCChHHHHHHhcccc--cccCcccccee
Q 001318 4 LSRELVFLILQ-------------LEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKI 59 (1101)
Q Consensus 4 ~~~e~vrli~q-------------l~~esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~~ 59 (1101)
.+.|+=|||+. ..+|+|+... -...|.+|..|+-++|+..+.++- .++.+ + .+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n--~-~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN--R-EL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc--h-hH
Confidence 35677788887 8889999871 677889999999999999998872 22222 2 27
Q ss_pred hhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhh---cccCcchhhhhhccCCchHHHHHHHHHHhh
Q 001318 60 FFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL---TLENFRENEQLSKYGDTKSARSIMLVELKK 136 (1101)
Q Consensus 60 ~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll---~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 136 (1101)
.|.+.+|+++||+..+...+|+.++|++|.|+...+++.++.|...| .....++.+...-| ....|.++.+.+..
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~--~~s~R~kvA~~vN~ 179 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELL--SQSLRQKVASEVNS 179 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHH--HHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999877767766665543 33322222221111 24457777777776
Q ss_pred cccCCccccccccCCCCC-hHHHHHHHHHhHHHH
Q 001318 137 LIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ 169 (1101)
Q Consensus 137 ~i~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 169 (1101)
.|-...- .+ ..+|..||+.-+.-|
T Consensus 180 aiL~~~~---------~~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 180 AILASQE---------HESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHHhc---------ccccchHHHHHHHHHHHH
Confidence 6533111 11 456777774443333
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.003 Score=67.61 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=90.5
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec---cC-eEEEEEeec-ceEeeeecCcc--cCeeEEEEc
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DS-SIQIYNVRV-DEVKSKLKGHS--KRITGLAFS 898 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg-~v~vwd~~~-~~~~~~l~~h~--~~V~~l~~s 898 (1101)
..|.-.|+.+|+....+. ....+..+.|||.|..+|+.+-+ +. .-|||-+.+ +.....+..|. ..+..=-|+
T Consensus 168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 456667788877654444 45678899999988888877642 32 237787764 44444444343 234455689
Q ss_pred CCCCEEEEEe-----CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCC------------
Q 001318 899 HALNVLVSSG-----ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET------------ 960 (1101)
Q Consensus 899 ~dg~~l~s~s-----~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~------------ 960 (1101)
|||..|.--+ .+..|.-.|+.+++... +.... .-..+-.++||++++. +.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~~p--------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LMEMP--------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEEE---------SEEEEEE-TTSSEEEEEE---------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEeCC--------ceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 9998776432 24467777888765422 22222 2246677899999887 5442
Q ss_pred ----eEEEEEcCCceeeeecc------CCCCCCCe--eEEEEcCCCCEEE-EEEcCCeEEEEEc
Q 001318 961 ----QLAIFETTKLECVKQWV------PRESSAPI--THATFSCDSQLVY-ACFLDATVCVFSA 1011 (1101)
Q Consensus 961 ----~v~vwd~~~~~~~~~~~------~~~h~~~i--~~l~~spdg~~l~-s~s~dg~v~vwd~ 1011 (1101)
-|.++++.+++...... ...|...+ -...|||||++++ ++...|...||-+
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 46678887766532211 10111122 3578999999865 5556777766644
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0011 Score=74.38 Aligned_cols=224 Identities=11% Similarity=0.115 Sum_probs=119.6
Q ss_pred ccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001318 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 817 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg 817 (1101)
......+.++|+|+.+++ +.+|...|+..... +. ...+.....+|.+.+
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~----------------------r~--------k~~G~g~~~vw~~~n 80 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW----------------------RN--------KAFGSGLSFVWSSRN 80 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT----------------------EE--------EEEEE-SEEEE-TSS
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC----------------------cc--------cccCceeEEEEecCc
Confidence 345688999999997777 67777777752100 00 022345568888866
Q ss_pred CEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEE
Q 001318 818 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 897 (1101)
Q Consensus 818 ~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 897 (1101)
++.+.-.+++|.++.--+......++.. ..+..+-. |.+|+..+.+ .|.+||..+++.++++... +|..|.|
T Consensus 81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 81 RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred cEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence 6444444788999743333333344322 22333322 6677766544 8999999999999998744 3899999
Q ss_pred cCCCCEEEEEeCCCceEEEeCCCc---------ccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcC
Q 001318 898 SHALNVLVSSGADSQLCVWSSDGW---------EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 968 (1101)
Q Consensus 898 s~dg~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~ 968 (1101)
+++|.+++-.+.+ ++.|++.+.. -......+.... ..|.+.+|..| .++.+...+++- +-
T Consensus 153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~------~~IkSg~W~~d--~fiYtT~~~lkY--l~ 221 (443)
T PF04053_consen 153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS------ERIKSGCWVED--CFIYTTSNHLKY--LV 221 (443)
T ss_dssp -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEETT--EEEEE-TTEEEE--EE
T ss_pred ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec------ceeEEEEEEcC--EEEEEcCCeEEE--EE
Confidence 9999999998866 5888876542 000111111111 36788899888 333343336666 33
Q ss_pred Ccee--eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 969 KLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 969 ~~~~--~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
+|+. +..+ ..+++=+.+.+....+.....|+.|..+.++....
T Consensus 222 ~Ge~~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~ 266 (443)
T PF04053_consen 222 NGETGIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLSEL 266 (443)
T ss_dssp TTEEEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHH
T ss_pred cCCcceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHHHH
Confidence 3332 3332 45777788888778888888999999888765443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00034 Score=79.16 Aligned_cols=185 Identities=14% Similarity=0.202 Sum_probs=127.5
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
...++++++ .+++++-|. +|.|++++... .. .+...|... .. +|.++++|+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av--~~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAV--HDKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHh--hcceeeeccccceEEEEecCC-cc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 445666666 356899998 89999999764 33 333223332 44 89999999999999999998887776
Q ss_pred eecCcccCeeEEEEcCC-----CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe
Q 001318 884 KLKGHSKRITGLAFSHA-----LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 958 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~d-----g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 958 (1101)
++. ...++.+|+++|| .+.+++||.-| +.++.-.=-.......+.. ..+.|.++.| .|.++|-++
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~------~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE------GEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec------CccceEEEEe--cCcEEEEec
Confidence 665 3467999999998 57899999888 7766422100001111111 1257888877 466777799
Q ss_pred CCeEEEEEcCCceeeeeccCCCC----CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 959 ETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 959 d~~v~vwd~~~~~~~~~~~~~~h----~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
|-.|+|||+.+.+.+..+..... ..-...+.|.++.++++ | ...+|+|..+.
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence 99999999999988877654221 22345678887766554 4 55578888887
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.042 Score=64.13 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=42.0
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCc
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 888 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 888 (1101)
|.|.-+|+.+++.....+............ .+.+++.++.||.++.+|.++|+.+-..+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 457888888888877665332222222122 3447777888999999999999998777543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0034 Score=69.53 Aligned_cols=269 Identities=14% Similarity=0.179 Sum_probs=140.1
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeE------ee------------eeeeeecCCCCc------cccccc
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV------LR------------NFKVWDLGACSM------PLQAAL 402 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~~~------~~~~~~ 402 (1101)
.|+++.|+++..- |++|...|.|.||.+...+.-. .. +-++-|+..... -.+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5889999999775 8999999999999886653322 00 112333322111 122234
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeecc------ccCCeeEEEEc-----CCC-CeEEEE
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFS-----HPN-KQLCVI 470 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~------h~~~V~~~~~s-----~d~-~~~~l~ 470 (1101)
+....+.|++++.| |=.++|+|+.+|.+.|.|++....+... .+.. ....|+++.|+ .|+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55668999999997 6779999999999999999876655431 2322 34468888886 222 224788
Q ss_pred EecCCCcEEEEeCC-C--CceE----EEecCcccCeEEEeeeecCCc-------------------cEEEEEecCCcEEE
Q 001318 471 TCGDDKTIKVWDAT-N--GAKQ----YIFEGHEAPVYSVCPHHKENI-------------------QFIFSTALDGKIKA 524 (1101)
Q Consensus 471 s~~~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~v~~~~~~~~-------------------~~l~s~~~dg~i~~ 524 (1101)
.|...|.+.+|.+. . +... .....+.++|..++.-...+| +-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999875 1 2211 112245566666653211110 12333344677888
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 604 (1101)
+...+.+...+.......+..+.+-+-. . ...+..|++-..+|.|++|.+..-+.+..+.....
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~---------------~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~ 303 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTI---------------S-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP 303 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-----------------EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred EeCCCCcccceeeccccccceEEEEeec---------------c-cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence 8776655443332111111222221000 0 11234577788999999999999998888775321
Q ss_pred --CCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 605 --LPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 605 --~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
...+...+++++|..++-.+. ..+.++.+-
T Consensus 304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv~ 335 (395)
T PF08596_consen 304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSVW 335 (395)
T ss_dssp --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEEE
T ss_pred cccccccccEECCCCCEEEEeCc-ccEEEEEEE
Confidence 123556788889987665543 455555543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00024 Score=78.31 Aligned_cols=80 Identities=19% Similarity=0.327 Sum_probs=67.3
Q ss_pred eeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 338 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 338 ~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
....+.....|.|++++|+.+. ++.|..||.|++||...+.... ..+.-..+.++|+|
T Consensus 252 svtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~~---------------------~ka~~~P~~iaWHp 309 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTLL---------------------AKAEFIPTLIAWHP 309 (545)
T ss_pred EEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeeee---------------------eeecccceEEEEcC
Confidence 3445568999999999999996 9999999999999998764432 23345688999999
Q ss_pred CCCeEEEEEcCCeEEEEEccCC
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGG 439 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~ 439 (1101)
+|..+++|+..|.+.+||+.-+
T Consensus 310 ~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 310 DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999998754
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.014 Score=65.70 Aligned_cols=198 Identities=15% Similarity=0.176 Sum_probs=109.6
Q ss_pred EEEEecCCCEEEEEeCC------------eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 810 CFALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 810 ~~~~s~dg~~la~~sdg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
.++.+|.|-.+|...|. .|++|+.. |+.+..+.-..+.+.++.|+. +.. |++-..||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCC
Confidence 35566666666666543 59999875 566666543448899999997 544 4456789999999986
Q ss_pred cceE-------eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccc-cceee-ecCCCCC--CCCCCCeE-E
Q 001318 878 VDEV-------KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFL-QIPTGRT--PTAQSDTR-V 945 (1101)
Q Consensus 878 ~~~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~-~~~~~-~~~~~~~--~~~~~v~~-~ 945 (1101)
|+. +....-....+....+..+|-.+.+ .++.+.+- ...... ..+.. ..+.... ........ .
T Consensus 110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~ 184 (410)
T PF04841_consen 110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIP 184 (410)
T ss_pred -CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccce
Confidence 332 1111112233333344445633333 34433333 222211 00001 1111000 00001111 2
Q ss_pred EEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 946 QFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 946 ~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.++.+....+. ..++.+.+.+....+. + ...+++..|++||+|++||.-..+|.+.|.+.+-.+.++.+.
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 34445444444 4455565444332211 1 114689999999999999999999999999887777777666
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.15 Score=60.11 Aligned_cols=470 Identities=12% Similarity=0.111 Sum_probs=237.4
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCcccCeEEEeeeecCCcc----EEEEEecCCcEEEEec
Q 001318 453 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQ----FIFSTALDGKIKAWLY 527 (1101)
Q Consensus 453 ~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~----~l~s~~~dg~i~~wd~ 527 (1101)
+.++..+.+.+..+ ++.++.++.+...++..+.....- ......|.|+.++|-++++ +++.|.-+..+
T Consensus 488 ~~~ti~~~~~n~sq--VvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~----- 560 (1096)
T KOG1897|consen 488 GKITIGVVSANASQ--VVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDIS----- 560 (1096)
T ss_pred CceEEEEEeecceE--EEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceE-----
Confidence 33444444445553 555666677777777766622211 2235668888887665544 45544433322
Q ss_pred CCCCceeeecCCCCceeEEEEccCCceEEecc-----ccCceeEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEc
Q 001318 528 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-----RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSID 600 (1101)
Q Consensus 528 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~ 600 (1101)
.-+.+.||........ -...+-...+-.+..+|+++..||.+.-|.++ +++.-..-+
T Consensus 561 ----------------~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk 624 (1096)
T KOG1897|consen 561 ----------------MILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK 624 (1096)
T ss_pred ----------------EEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc
Confidence 2233333333211110 01234445555667899999999998777554 443322222
Q ss_pred CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccc
Q 001318 601 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 680 (1101)
Q Consensus 601 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1101)
.+-+..++.--.|+..++.-+.+..|.-..+|.-+.. -.+..+.-..-. .+.+..
T Consensus 625 ~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-Lv~spls~kev~----------~~c~f~-------------- 679 (1096)
T KOG1897|consen 625 VTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-LVYSPLSLKEVN----------HMCPFN-------------- 679 (1096)
T ss_pred cccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-EEEeccchHHhh----------hhcccc--------------
Confidence 2223334444456654444444445556556643221 222111100000 000000
Q ss_pred ccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCc
Q 001318 681 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 760 (1101)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 760 (1101)
...-...++. ...+.+++..++....... ++ +|. ......+++.+....+.+.+...
T Consensus 680 ----------------s~a~~d~l~~-~~~~~l~i~tid~iqkl~i-rt--vpl---~~~prrI~~q~~sl~~~v~s~r~ 736 (1096)
T KOG1897|consen 680 ----------------SDAYPDSLAS-ANGGALTIGTIDEIQKLHI-RT--VPL---GESPRRICYQESSLTFGVLSNRI 736 (1096)
T ss_pred ----------------cccCCceEEE-ecCCceEEEEecchhhcce-ee--ecC---CCChhheEecccceEEEEEeccc
Confidence 0001122222 2335666666665432211 11 121 23445667766444444444322
Q ss_pred eEEeeeccccccCCCCceeeeecCccccCCCccccccc-cCCCCCCCCeeEEEEecC-CCEEEEEe-----------CCe
Q 001318 761 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKN-DSYVMSAS-----------GGK 827 (1101)
Q Consensus 761 ~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~-~~~~~~~~~i~~~~~s~d-g~~la~~s-----------dg~ 827 (1101)
....= . .+.......++++|.++-+.+... +........+.++.|..| +.++++|. .|.
T Consensus 737 e~~~~------~--~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR 808 (1096)
T KOG1897|consen 737 ESSAE------Y--YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR 808 (1096)
T ss_pred ccchh------h--cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce
Confidence 11100 0 011111112345555554433321 111111223444557777 77888773 267
Q ss_pred EEEEECCCCceeeEecCC--CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE
Q 001318 828 ISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 905 (1101)
Q Consensus 828 i~vwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~ 905 (1101)
|.+|....++.++....+ .+.+.++..- +|++||. -+..|++|+..+.+.++.-..|..++..+...-.|..++
T Consensus 809 Iivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~ 884 (1096)
T KOG1897|consen 809 IIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIA 884 (1096)
T ss_pred EEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEE
Confidence 889988875555444333 3455555443 5777764 467899999999877877778889999999999999999
Q ss_pred EEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCc----------eeeee
Q 001318 906 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL----------ECVKQ 975 (1101)
Q Consensus 906 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~----------~~~~~ 975 (1101)
.|..-+.+.+--.+..+. .+....+.-.+ ..++++.+-.+..++.+-.++.+.+-..++. +.+..
T Consensus 885 VgDlm~Sitll~y~~~eg---~f~evArD~~p--~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~ 959 (1096)
T KOG1897|consen 885 VGDLMRSITLLQYKGDEG---NFEEVARDYNP--NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGK 959 (1096)
T ss_pred EeeccceEEEEEEeccCC---ceEEeehhhCc--cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceee
Confidence 999888777665544221 12222222211 3567788878888877766666555433321 01111
Q ss_pred ccCC------CCCCCeeE--EEEcCCCCEEEEEEcCCeEEEEE
Q 001318 976 WVPR------ESSAPITH--ATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 976 ~~~~------~h~~~i~~--l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
|..+ .|..-|.+ -..+|-+..++.|..+|.|-+--
T Consensus 960 ~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i~ 1002 (1096)
T KOG1897|consen 960 FHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGIIV 1002 (1096)
T ss_pred EEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEEE
Confidence 1110 13333333 13345555678888899987653
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0067 Score=67.93 Aligned_cols=206 Identities=13% Similarity=0.139 Sum_probs=146.2
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec---cCeEEEEEeecceE
Q 001318 807 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEV 881 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~~~~~ 881 (1101)
....+++++++..+.+.. ++.|.+.|..+.+......-. .....+++++ +++.+.++.. ++.+.+.|-.+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345788899998666655 689999998877766655422 2677899999 6655555544 68999999988888
Q ss_pred eeeecCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCccccc-ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--
Q 001318 882 KSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-- 957 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-- 957 (1101)
+.....-..+ ..++++|+|..+..+. .++.|.+.|..+..... ........+ .....+.++++|.++.+.
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEec
Confidence 8775443344 8899999999666554 78899999977643221 000001111 245789999999987773
Q ss_pred eC--CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-CeEEEEEcCCceeeeecC
Q 001318 958 HE--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 958 ~d--~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-g~v~vwd~~~~~~~~~~~ 1021 (1101)
.+ +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.|.+-|..+......+.
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 22 58999999988887763322223 56788999999998877544 889999999988887655
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.031 Score=65.22 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=87.0
Q ss_pred eEEEEEeecceEeeeecCcccCeeE---------EEEcCCCC---EEEEEeCCCceEEEeCCCcccccce------ee--
Q 001318 870 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNR------FL-- 929 (1101)
Q Consensus 870 ~v~vwd~~~~~~~~~l~~h~~~V~~---------l~~s~dg~---~l~s~s~D~~v~iwd~~~~~~~~~~------~~-- 929 (1101)
.|.-.|+++|+..-.++.....++. +....+|+ .++.+..+|.+.+.|-.+|+..... ..
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5666788888887666542222221 22224665 7889999999999999998753110 00
Q ss_pred ec--CCCCCC---------------------CCCCC--eEEEEcCCCcEEEE-EeC------------------------
Q 001318 930 QI--PTGRTP---------------------TAQSD--TRVQFHQDQIHFLV-VHE------------------------ 959 (1101)
Q Consensus 930 ~~--~~~~~~---------------------~~~~v--~~~~~s~dg~~la~-~~d------------------------ 959 (1101)
.+ ..+... ..+.+ ..++++|+..++.+ ..+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 00 000000 00000 12566776665554 211
Q ss_pred ---------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 960 ---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 ---------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.|.-+|+.+++.+-...... ....+. +.-.+.+++.++.||.++.+|..||+.+-+++
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 357788888888766543211 111111 22255677778889999999999999998887
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00033 Score=77.19 Aligned_cols=129 Identities=11% Similarity=0.090 Sum_probs=89.6
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEe----cCCc----EEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCC
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGT----NVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 408 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~----~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (1101)
++.....-+....++.||-...+.+.|-. .+|. -.+|++..++... ..+ +-.....
T Consensus 197 EvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr-vsv---------------tsipL~s 260 (545)
T PF11768_consen 197 EVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR-VSV---------------TSIPLPS 260 (545)
T ss_pred EEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE-EEE---------------EEEecCC
Confidence 33444445566788888875544444332 2443 3566665443221 111 2335677
Q ss_pred CeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
.|.|++++|+.+.|+.|+.||+|++||...+... +..+.-..+.++|+|+|. ++++|+..|.+.+||+.-...
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCcc
Confidence 9999999999999999999999999999876322 223455688999999999 899999999999999875443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0072 Score=67.94 Aligned_cols=218 Identities=17% Similarity=0.167 Sum_probs=119.2
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 805 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
...+..+.++|+|++++++++|...|+.....+... .+.....+|.+ .++ +|+-...+.|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 445788999999999999999999999854433322 23456788988 565 56666688999973222332223
Q ss_pred ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEE
Q 001318 885 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 964 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~v 964 (1101)
++.. ..+..|-. |.+|...+.+ .|.+||+++++... .... ..|..+.|+++|.+++...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~-----~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIR-----RIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEE-----EESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceee-----EEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 12344433 8888877655 79999999865322 2221 2478999999999999977778888
Q ss_pred EEcCCc--------------eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee--eeecCCCcccCC
Q 001318 965 FETTKL--------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPA 1028 (1101)
Q Consensus 965 wd~~~~--------------~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~ 1028 (1101)
++.+.. ..+..+ ...|.+.+|..| .++-.+.. .++- +-.|+. ++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-------
T ss_pred EEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-------
Confidence 765543 233222 457889999766 44434334 6665 444443 33332
Q ss_pred CCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1029 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1029 ~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
..++ -+.+.++ .+.+.....|+.|..+.+...+
T Consensus 233 ----~~~y--llgy~~~-~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 233 ----KPLY--LLGYLPK-ENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp ----S--E--EEEEETT-TTEEEEE-TT--EEEEE--HHH
T ss_pred ----CceE--EEEEEcc-CCEEEEEECCCCEEEEEECHHH
Confidence 1144 4556663 4688888899999988875443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.8e-05 Score=86.46 Aligned_cols=159 Identities=14% Similarity=0.223 Sum_probs=108.2
Q ss_pred CCCCcEEEEEecCCC-eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCe
Q 001318 344 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 421 (1101)
Q Consensus 344 h~~~v~~~~~spdg~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 421 (1101)
....+.|+++.-+.+ -++++|..+|.|.+-.+....-. ...+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 556788888876554 58999999999999887643221 1124678888999999999 8889
Q ss_pred EEEEE----cCCeEEEEEccCC--ceeeeeeeec-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc-eEEEec
Q 001318 422 FGVAY----SRHIVQIYSYHGG--DEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE 493 (1101)
Q Consensus 422 las~~----~d~~i~iwd~~~~--~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~ 493 (1101)
||+|- .|..+.|||+.++ .+.... .+. +-.....+++|-.+.+ ++++|...+.+.++|++... ....+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence 99883 3677999999986 211111 122 2445677899998887 78899988999999987322 22222
Q ss_pred CcccCeEEEeeeecCCccEEEEEecCCcEEEEe
Q 001318 494 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 526 (1101)
Q Consensus 494 ~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd 526 (1101)
.+..+..+.+.+- .+.++++-. ||.|-+||
T Consensus 194 -nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 194 -NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred -hhhhcccceecCC-CCCceeccc-cCceeecc
Confidence 2223344444331 234666655 99999999
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00068 Score=75.79 Aligned_cols=185 Identities=13% Similarity=0.119 Sum_probs=116.6
Q ss_pred CCCeeEEEEecCCCEEEEEe---CC--eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC--eEEEEEee
Q 001318 805 EEAVPCFALSKNDSYVMSAS---GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVR 877 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s---dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~ 877 (1101)
...+..-+|+|+++.++..+ .+ .+.++++.+++....+. ..+.-..-+|+|++.+++++...|| .|+++|+.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 44566778999999877664 23 49999999887665554 3444556789994444445556666 56666777
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeC-CCc--eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEE
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 954 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 954 (1101)
++. +..+..-.+.-+.-.|+|||++|+-.+. .|. |.+.+.+++.. .+ + +..+. .-..-.+||||+++
T Consensus 271 ~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~r-i-T~~~~-----~~~~p~~SpdG~~i 340 (425)
T COG0823 271 GKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TR-L-TFSGG-----GNSNPVWSPDGDKI 340 (425)
T ss_pred CCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eE-e-eccCC-----CCcCccCCCCCCEE
Confidence 666 3335544444457789999999886654 444 55556665442 11 1 11111 11266899999999
Q ss_pred EEEe--CCe--EEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC
Q 001318 955 LVVH--ETQ--LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1003 (1101)
Q Consensus 955 a~~~--d~~--v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d 1003 (1101)
+... ++. |.++|+.++...+.+. +......-+|.++|+.+...+.-
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEeccCCceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccC
Confidence 9832 454 7777777666433332 23344556788888887755543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.031 Score=57.32 Aligned_cols=162 Identities=8% Similarity=0.105 Sum_probs=95.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
-...+..++|.|+...|+++....+.|...+.+ |+.+.+.+ +.+ .+..-.|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 445699999999988889999999999988864 67665422 223 34678899988888887
Q ss_pred EEEcCCeEEEEEccCCce---eee--eeee--c-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC---CceEEE-
Q 001318 424 VAYSRHIVQIYSYHGGDE---VRQ--HLEI--D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYI- 491 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~---~~~--~~~l--~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~~- 491 (1101)
+--.++.+.++++..... ... ...+ . .+...+-.++|.+.++. |+.+-...-..|+.+.. +..+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 766789999998843221 111 1111 1 35567999999999885 44445555556665543 222211
Q ss_pred -e------cCcccCeEEEeeeecCCccEEEEEecCCcEEEEec
Q 001318 492 -F------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527 (1101)
Q Consensus 492 -~------~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~ 527 (1101)
. ......+.++.+++. .+++++.......|..+|.
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR 200 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC
Confidence 1 123345677888754 5578888888888888883
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.17 Score=57.18 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=78.2
Q ss_pred EEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCc-c
Q 001318 812 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S 889 (1101)
Q Consensus 812 ~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~ 889 (1101)
.++.+....+... ++.+.+.+....+. +. ..+++..+++|| ++++||.-..+|.+.|.+..-.+.+..+... .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3445555555444 56666555433211 22 346899999999 9999999999999999876555555555433 3
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCC
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 969 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~ 969 (1101)
.....+.|.-+...++.- ...|.+..... ..+.|.-++..++...-..+||+.-..
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence 455677776543333222 23344443222 223444444444445444477777666
Q ss_pred ceeeeec
Q 001318 970 LECVKQW 976 (1101)
Q Consensus 970 ~~~~~~~ 976 (1101)
.+.++..
T Consensus 316 ~~~l~~V 322 (410)
T PF04841_consen 316 HEFLQRV 322 (410)
T ss_pred eEEEEEC
Confidence 6665544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.08 Score=59.37 Aligned_cols=240 Identities=16% Similarity=0.160 Sum_probs=156.9
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEe-cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 807 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
....+++.+++..+.+.. ...+...+.. ....... ......-..+++++.+.+..+....+..|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 456678888886666554 2345555555 2222221 21113455778888445566666677999999987776665
Q ss_pred eecCcccCeeEEEEcCCCCEEEEEeC---CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--e
Q 001318 884 KLKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 958 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~dg~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~ 958 (1101)
...--. .-..++++++++.+..+.. ++++.+.|-.+...... ...+.. -..++++|+|..+.+. .
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~----~~vG~~-----P~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT----IPVGNT-----PTGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE----EecCCC-----cceEEECCCCCeEEEEecC
Confidence 543222 4567999999987776655 67788888777553222 233321 2789999999988874 5
Q ss_pred CCeEEEEEcCCceeeeeccC---CCCCCCeeEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeeeecCCCcccCCCCCC
Q 001318 959 ETQLAIFETTKLECVKQWVP---RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSS 1032 (1101)
Q Consensus 959 d~~v~vwd~~~~~~~~~~~~---~~h~~~i~~l~~spdg~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1032 (1101)
++.|.+.|..+....+ ... -.-......+.++|||.++.+.... +.+.+.|..++.....-... .
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~--------~ 251 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV--------G 251 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc--------c
Confidence 8999999988776664 110 0113456788999999977665544 58999999998887652211 1
Q ss_pred CCccceEEEEeCCCCCEEEEE-ecCCcEEEEeccCCC
Q 001318 1033 SNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1033 ~~v~~~~i~~~~~d~~~l~s~-~~dg~v~vW~~~~~~ 1068 (1101)
.. .+..+..+| ++..+.+. +..+.+.+-|..+..
T Consensus 252 ~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 252 SG-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred cC-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 11 344688899 56776665 444888888887766
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.015 Score=68.26 Aligned_cols=203 Identities=13% Similarity=0.071 Sum_probs=110.7
Q ss_pred CCeEEEEEecCCCcEEEEEe------ccC--eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCC-CceEEE-
Q 001318 847 PAATFLAFHPQDNNIIAIGM------DDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVW- 916 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg~------~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D-~~v~iw- 916 (1101)
..+...++|| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|.+.... ..+++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777776654 244 4555554 22222222332 37889999999988877533 122222
Q ss_pred ----------eCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEE---EEcCCceeeee-----ccC
Q 001318 917 ----------SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI---FETTKLECVKQ-----WVP 978 (1101)
Q Consensus 917 ----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~v---wd~~~~~~~~~-----~~~ 978 (1101)
+++.++... .....|..+.|||||+.++...+++|.+ -....|. ... +.
T Consensus 426 ~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~- 492 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVG- 492 (591)
T ss_pred cCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEee-
Confidence 333322110 0124699999999999999966788877 4444454 111 11
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC-ceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCC
Q 001318 979 RESSAPITHATFSCDSQLVYACFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1057 (1101)
Q Consensus 979 ~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg 1057 (1101)
.+-...+.++.|..++.++ ++..++...+|.+.- |.....+ +.+.....+. +|+-.+ ..++....+|
T Consensus 493 ~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~------~~~n~~~~v~--~vaa~~---~~iyv~~~~g 560 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL------PSRNLSAPVV--AVAASP---STVYVTDARA 560 (591)
T ss_pred cccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccccc------CCCCccCceE--EEecCC---ceEEEEcCCc
Confidence 1223346889999999965 455555555565432 2222111 1111111133 566665 2455556666
Q ss_pred cEEEEeccCCCccccCCCCCC
Q 001318 1058 GVHVFEPLESEGKWGVPPPVD 1078 (1101)
Q Consensus 1058 ~v~vW~~~~~~~~~~~~~~~~ 1078 (1101)
.+.+=.-..++..|+-.+...
T Consensus 561 ~~~l~~~~~~~~~W~ev~~l~ 581 (591)
T PRK13616 561 VLQLPNSDSGDQYWREVPGLM 581 (591)
T ss_pred eEEecCCCCCCCCceECcccc
Confidence 433332223336676655544
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0077 Score=67.51 Aligned_cols=178 Identities=13% Similarity=0.057 Sum_probs=109.0
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe---cc-CeEEEEEeecceEeeeecCcccCeeEEEEcCCC
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---DD-SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 901 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~---~d-g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg 901 (1101)
..+.+-|.. +.....+......+..-+|+| +++.++... .. ..++++|+.+++....+. ..+.-...+|||||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCC
Confidence 345555554 454555554555677788999 666655442 22 469999999876444332 23334457999999
Q ss_pred CEEEE-EeCCCce--EEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC----eEEEEEcCCceeee
Q 001318 902 NVLVS-SGADSQL--CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVK 974 (1101)
Q Consensus 902 ~~l~s-~s~D~~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~----~v~vwd~~~~~~~~ 974 (1101)
+.|+. ...|+.. .+.|+.++.. .+ +....+ .-..-.|+|||++++...|+ .|.+++++.....+
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~--~~-Lt~~~g------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNL--PR-LTNGFG------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcc--ee-cccCCc------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 88774 4556664 4556665441 11 221211 22466899999999985443 58888888776533
Q ss_pred eccCCCCCCCeeEEEEcCCCCEEEEEEcC-Ce--EEEEEcCCceeee
Q 001318 975 QWVPRESSAPITHATFSCDSQLVYACFLD-AT--VCVFSAANLKLRC 1018 (1101)
Q Consensus 975 ~~~~~~h~~~i~~l~~spdg~~l~s~s~d-g~--v~vwd~~~~~~~~ 1018 (1101)
.-. .+ +.-..-.|||||++|+..+.. |. |.+.|+.++....
T Consensus 321 iT~-~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 321 LTF-SG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred eec-cC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 322 12 122277899999998877643 44 7778877766433
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.1 Score=59.75 Aligned_cols=247 Identities=15% Similarity=0.146 Sum_probs=123.6
Q ss_pred cEEEEEecCCCeEEEEEecCC----cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 348 PMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 348 v~~~~~spdg~~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
+...++||||++++++-+..| .++|.|+.+++.+.. .+. . ..-..++|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~-----------------~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIE-----------------N--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEE-----------------E--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-ccc-----------------c--cccceEEEeCCCCEEE
Confidence 446789999998666666666 499999999977653 111 1 1122499999999887
Q ss_pred EEEcCC-----------eEEEEEccCCceeeeeeeeccccCC--eeEEEEcCCCCeEEEEEecC-C-CcEEEEeCCCC--
Q 001318 424 VAYSRH-----------IVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGD-D-KTIKVWDATNG-- 486 (1101)
Q Consensus 424 s~~~d~-----------~i~iwd~~~~~~~~~~~~l~~h~~~--V~~~~~s~d~~~~~l~s~~~-d-~~i~iwd~~~~-- 486 (1101)
....+. .|+.|++.++..-. ...+.+.... ...+..++|++.+++.+.+. + ..+.+-|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 665332 37788887764321 1134443333 57889999999643333332 2 35788888775
Q ss_pred --ceEEEecCcccCe-EEEeeeecCCccEEEEEec---CCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccc
Q 001318 487 --AKQYIFEGHEAPV-YSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 560 (1101)
Q Consensus 487 --~~~~~~~~h~~~v-~~v~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 560 (1101)
.....+......+ ..+.. . ++.+++.... .+.|...++....... -..+.+.++.
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~-~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~--------~~~~l~~~~~-------- 325 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDH-H--GDRLYILTNDDAPNGRLVAVDLADPSPAE--------WWTVLIPEDE-------- 325 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEE-E--TTEEEEEE-TT-TT-EEEEEETTSTSGGG--------EEEEEE--SS--------
T ss_pred CcCCcEEEeCCCCceEEEEEc-c--CCEEEEeeCCCCCCcEEEEeccccccccc--------ceeEEcCCCC--------
Confidence 2233333233333 33332 1 2233333322 3455555655543200 0001111111
Q ss_pred cCceeEEEEcCCCCEEEEE-eCC--CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC----CCcEEEEE
Q 001318 561 KRSLGVVQFDTTKNRFLAA-GDD--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNGIKILA 633 (1101)
Q Consensus 561 ~~~~~~~~~~~~~~~l~~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~ 633 (1101)
......+...+++|+.. ..+ ..|+++++..+.....+..... ..|..+...+++..+..... -+++..||
T Consensus 326 --~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d 402 (414)
T PF02897_consen 326 --DVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYD 402 (414)
T ss_dssp --SEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEE
T ss_pred --ceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 11122222233444443 333 3588899984455555543322 23444444455554443321 35677788
Q ss_pred ecCc
Q 001318 634 TSDG 637 (1101)
Q Consensus 634 ~~~~ 637 (1101)
+.++
T Consensus 403 ~~t~ 406 (414)
T PF02897_consen 403 LATG 406 (414)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8777
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.071 Score=57.18 Aligned_cols=233 Identities=11% Similarity=0.125 Sum_probs=131.7
Q ss_pred CCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCe
Q 001318 748 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 827 (1101)
Q Consensus 748 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~ 827 (1101)
..++.|+.|+++| +.+++.... ..... ..+...|..+.+.++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~---------------------~~~~~-----i~~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP---------------------SKPTR-----ILKLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC---------------------cccee-----EeecceEEEEEEecccCEEEEEcCCc
Confidence 3567788898888 777775110 00000 00334499999999999999999999
Q ss_pred EEEEECCCCceeeEe--------------cCCCCCeEEEE--EecCCCcEEEEEeccCeEEEEEeecc-----eEeeeec
Q 001318 828 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK 886 (1101)
Q Consensus 828 i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~d~~~lasg~~dg~v~vwd~~~~-----~~~~~l~ 886 (1101)
++++++......... ......+...+ -...+..+|+++. ...|.+|..... +..+.+.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999998765443311 01122344444 1121445565554 458999888653 3445544
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC------CCCCCCCeEEEEcCCCcEEEEEeCC
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR------TPTAQSDTRVQFHQDQIHFLVVHET 960 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~dg~~la~~~d~ 960 (1101)
-...+.+++|. ++.|+.|..++ ..+.|+.++..... ....... .....++..+. -+++.+|++ .+.
T Consensus 137 -lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~-~~~ 208 (275)
T PF00780_consen 137 -LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSEL--LDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLC-YDN 208 (275)
T ss_pred -cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEE--eCccCCcchhhhcccCCCceEEEE-eCCceEEEE-ecc
Confidence 34678999998 55677776555 88899987553221 1111100 00001222223 334565554 333
Q ss_pred eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 961 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.-...|. .|+..+.... .-...+.++++ ...||++.+. +.|.||++.++++++.+.
T Consensus 209 ~g~fv~~-~G~~~r~~~i-~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 209 IGVFVNK-NGEPSRKSTI-QWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred eEEEEcC-CCCcCcccEE-EcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 3333333 3332221000 01345667777 3457776654 569999999999998876
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=9.8e-05 Score=80.97 Aligned_cols=198 Identities=14% Similarity=0.184 Sum_probs=129.6
Q ss_pred CCeeEEEEecCCC--EEEEEe-CCeEEEEECCCCce--eeEecCCCCCeEEEEEecCCCcEEEEEe----ccCeEEEEEe
Q 001318 806 EAVPCFALSKNDS--YVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM----DDSSIQIYNV 876 (1101)
Q Consensus 806 ~~i~~~~~s~dg~--~la~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~----~dg~v~vwd~ 876 (1101)
..+.|++...+.. .+++|. +|.|.+-......- .....++...+++++|++-|..+||+|- .|-.+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3456666554433 567776 79888887764322 2334567778999999998889999884 4668999999
Q ss_pred ecc--eEe--eeecC-cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC-C
Q 001318 877 RVD--EVK--SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-D 950 (1101)
Q Consensus 877 ~~~--~~~--~~l~~-h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d 950 (1101)
.++ .+. ..+.+ -.....+++|-.|.+++.+|...+.+.++|++........ +++ ..+..+..+| .
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-vnT--------k~vqG~tVdp~~ 207 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-VNT--------KYVQGITVDPFS 207 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-hhh--------hhcccceecCCC
Confidence 876 111 12222 3344668999989999999999989999998742211111 111 1356677888 7
Q ss_pred CcEEEEEeCCeEEEEEc-CCce-eeeeccCC--CCCCCeeEEEEcCCCC-EEEEEE-cCCeEEEEEcC
Q 001318 951 QIHFLVVHETQLAIFET-TKLE-CVKQWVPR--ESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAA 1012 (1101)
Q Consensus 951 g~~la~~~d~~v~vwd~-~~~~-~~~~~~~~--~h~~~i~~l~~spdg~-~l~s~s-~dg~v~vwd~~ 1012 (1101)
+.+++...|+.|.+||. .+-+ .+..+... .....+..++|+|... .|++.+ ..++|+.+|+.
T Consensus 208 ~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 88888888999999993 3322 12222111 1123589999999543 344444 45789999874
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0099 Score=69.67 Aligned_cols=188 Identities=12% Similarity=0.052 Sum_probs=105.5
Q ss_pred CCeeEEEEecCCCEEEEEe-------CC--eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc--------
Q 001318 806 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-------- 868 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-------- 868 (1101)
..+.+.+++|||+.++... |. .|.+++.. +.. ..+.. ....+.-.|+| ||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3578899999999887654 32 46666653 222 33321 22478899999 77767666432
Q ss_pred ----CeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEE---EeCCCcccccceeeecCCCCCCCCCC
Q 001318 869 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS 941 (1101)
Q Consensus 869 ----g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1101)
+.+++.++..++... ...+.|..+.|||||..|+... ++.|.+ -....|+...........+-. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444333322 2356799999999999988766 467776 444444321111122222111 23
Q ss_pred CeEEEEcCCCcEEEEEeCC--eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEE
Q 001318 942 DTRVQFHQDQIHFLVVHET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1007 (1101)
Q Consensus 942 v~~~~~s~dg~~la~~~d~--~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~ 1007 (1101)
+..+.|..++.+++...+. .+...++..... ..+.......++.+++=+++ .|+....+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 5789999999966544333 344444443222 22122223566777777653 344555566443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.05 Score=58.04 Aligned_cols=221 Identities=13% Similarity=0.089 Sum_probs=126.7
Q ss_pred EEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee---
Q 001318 811 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--- 885 (1101)
Q Consensus 811 ~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l--- 885 (1101)
..|.++...|+... .+.|.-|+..+++. ..+.........+.+.. ++ .|+++ +.-+++++.+++..+..+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~-~g-~Lv~~--~~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDA-GG-RLIAC--EHGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecC-CC-eEEEE--ccccEEEeccCCceeEEeccc
Confidence 34566777666665 68899999876543 33332232223334443 44 44433 234666776655542222
Q ss_pred -cC-cccCeeEEEEcCCCCEEEEEeC-----C----CceEEEeCCC-cccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 886 -KG-HSKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 886 -~~-h~~~V~~l~~s~dg~~l~s~s~-----D----~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
.+ -...-+.+...|+|.+.++... . ..-.+|.+.. +. ......++. ..-..++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~---~~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDL---TIPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcE---EecCceEECCCCCE
Confidence 11 1245567888899988776544 1 1124565552 22 112222211 13367999999988
Q ss_pred EEEE--eCCeEEEEEcCC--cee---eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC-eEEEEEcCCceeeeecCCCcc
Q 001318 954 FLVV--HETQLAIFETTK--LEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAY 1025 (1101)
Q Consensus 954 la~~--~d~~v~vwd~~~--~~~---~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~ 1025 (1101)
|..+ ..+.|.-|++.. +.. ..........+..-.++...+|.+-+++-.+| .|.+|+.+ |+++..+.
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~---- 251 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK---- 251 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE----
Confidence 8774 557888887752 211 11111122356677788888898876555554 89999988 99998888
Q ss_pred cCCCCCCCCccceEEEEeCCCCCEEEEEec
Q 001318 1026 LPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1055 (1101)
Q Consensus 1026 ~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~ 1055 (1101)
+|. ..+.+++|-..+.+.|...+.
T Consensus 252 lP~------~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 252 LPV------KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCC------CCCccceEeCCCcCEEEEEec
Confidence 442 123378887655566554443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.046 Score=54.80 Aligned_cols=234 Identities=15% Similarity=0.110 Sum_probs=136.5
Q ss_pred eEEEEecCCCE-EEEEe-CCe-EEEEECCCCceeeEecCCCCC--eEEEEEecCCCcEEEEEecc-----CeEEEEEeec
Q 001318 809 PCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 878 (1101)
Q Consensus 809 ~~~~~s~dg~~-la~~s-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~ 878 (1101)
..++++|.... ++.+. -|+ ..+||..+.+...++...++. --.=.||| ||++|...-+| |.|-|||...
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 45677775543 44444 455 778999888777665433322 22346999 89988865433 7899999875
Q ss_pred c-eEeeeecCcccCeeEEEEcCCCCEEEEEeC------C------------CceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 879 D-EVKSKLKGHSKRITGLAFSHALNVLVSSGA------D------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 879 ~-~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------D------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
+ ..+..+..|.-.--.+.|.+||+.|+.+.. | -.+.+.|..+|+...+..+..... .
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~----~ 225 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR----Q 225 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh----h
Confidence 3 456777778766778999999999997753 1 123344444444333322221111 1
Q ss_pred CCCeEEEEcCCCcEEEEE-eCCe-----EEEEEcCCceeeeeccCC-----CCCCCeeEEEEcCCCCEEEEEEc-CCeEE
Q 001318 940 QSDTRVQFHQDQIHFLVV-HETQ-----LAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFL-DATVC 1007 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~~-~d~~-----v~vwd~~~~~~~~~~~~~-----~h~~~i~~l~~spdg~~l~s~s~-dg~v~ 1007 (1101)
.+|..++..+||+.++.+ ..|. ..+=-...++.+.-+... .....|-+++..-+..+++..+- .+...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 368889999999877763 2221 111111222222222111 11346778888877777665554 45578
Q ss_pred EEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEE
Q 001318 1008 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 1008 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW 1062 (1101)
+||..+|..+.... +++- . .++-. ..-++..+.+|.+.+.
T Consensus 306 i~da~tG~vv~~a~----l~da------a--Gva~~---~~gf~vssg~G~~~~~ 345 (366)
T COG3490 306 IWDAATGAVVSEAA----LPDA------A--GVAAA---KGGFAVSSGQGRIIFY 345 (366)
T ss_pred EEEcCCCcEEeccc----cccc------c--cceec---cCceEEecCCceEEec
Confidence 89999999886543 3321 1 12222 2335555567877766
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.042 Score=55.08 Aligned_cols=238 Identities=17% Similarity=0.194 Sum_probs=127.5
Q ss_pred EEEEeCCCc-EEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC-----CcEEEEEecCccccccccccccc
Q 001318 576 FLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----NGIKILATSDGIRLLRTFENLAY 649 (1101)
Q Consensus 576 l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~ 649 (1101)
++.+-.-|+ ..++|....+...++.........-.-.|||||.+|+..-+| |.|-|||...+.+.+-.+..|.-
T Consensus 83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~Gi 162 (366)
T COG3490 83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGI 162 (366)
T ss_pred EEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCc
Confidence 333444444 567888888777766544332223346799999999976443 78999999876555554443322
Q ss_pred cccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee--------ecccc
Q 001318 650 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW--------KLTEL 721 (1101)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w--------~~~~~ 721 (1101)
. .-++...+|++.++.+.. -|+.- +++.+
T Consensus 163 G-----------------------------------------pHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsM 199 (366)
T COG3490 163 G-----------------------------------------PHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSM 199 (366)
T ss_pred C-----------------------------------------cceeEEecCCcEEEEeCC--ceecccccCccccchhhc
Confidence 1 223455667777766542 22221 23322
Q ss_pred CCC---------ccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccC-CCCceeeeecCccccCCC
Q 001318 722 SEP---------NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN-SSGKATASVAPQLWQPPS 791 (1101)
Q Consensus 722 ~~~---------~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~lw~~~~ 791 (1101)
+.. ..+....+|...+...|..++..+||+.++.+--.|. ..+.. ..+.......++..+...
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~-------~~d~ppLvg~~~~g~~l~~~~~pe 272 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGP-------RNDLPPLVGHFRKGEPLEFLDLPE 272 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCC-------CccCCcceeeccCCCcCcccCCCH
Confidence 221 1222333443346677888888888884443321111 00000 000000111122233322
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC
Q 001318 792 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS 869 (1101)
Q Consensus 792 g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg 869 (1101)
.+... ....|-+++.+.+..+++..+ .+...+||..+|..+..-.- ..+..++-.. + =+++.+.+|
T Consensus 273 e~~~~-------~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~~--~-gf~vssg~G 340 (366)
T COG3490 273 EQTAA-------FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAAK--G-GFAVSSGQG 340 (366)
T ss_pred HHHHH-------HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccceecc--C-ceEEecCCc
Confidence 22211 244577889888888888777 46789999999988765331 1222333332 2 244455678
Q ss_pred eEEEEE
Q 001318 870 SIQIYN 875 (1101)
Q Consensus 870 ~v~vwd 875 (1101)
.+.++.
T Consensus 341 ~~~~~s 346 (366)
T COG3490 341 RIIFYS 346 (366)
T ss_pred eEEecc
Confidence 888774
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.099 Score=59.95 Aligned_cols=239 Identities=12% Similarity=0.096 Sum_probs=127.2
Q ss_pred eeEEEEecCCCEEEEEe--CC----eEEEEECCCCceeeEe-cCCCCCeEEEEEecCCCcEEEEEecc-----------C
Q 001318 808 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDD-----------S 869 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s--dg----~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~d-----------g 869 (1101)
+....+||||+++|.+- +| .|+++|+.+++.+... .. .....+.|.+ |++.|+....+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 34678999999999773 33 4999999999766432 21 1123499999 65555444322 2
Q ss_pred eEEEEEeecceE--eeeecCcccC--eeEEEEcCCCCEEEEEeCC----CceEEEeCCCcc--cccceeeecCCCCCCCC
Q 001318 870 SIQIYNVRVDEV--KSKLKGHSKR--ITGLAFSHALNVLVSSGAD----SQLCVWSSDGWE--KQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 870 ~v~vwd~~~~~~--~~~l~~h~~~--V~~l~~s~dg~~l~s~s~D----~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~ 939 (1101)
.|+.|.+.+... ...+...... ...+..++|+++|+..... ..+.+.++..+. ......+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~------ 276 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE------ 276 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS------
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC------
Confidence 477777765421 2233333322 5688899999998754332 346777777641 11222222211
Q ss_pred CCCeEEEEcCCCcEEEEE----eCCeEEEEEcCCcee---eeeccCCCCCC--CeeEEEEcCCCCE-EEEEEcCCe--EE
Q 001318 940 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQL-VYACFLDAT--VC 1007 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~~----~d~~v~vwd~~~~~~---~~~~~~~~h~~--~i~~l~~spdg~~-l~s~s~dg~--v~ 1007 (1101)
..+....-+..+.+++.+ .++.|...++.+... ...+. .|.. .+..+.. .+.+ ++....++. |+
T Consensus 277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 123333333355454443 345787788877653 22333 3333 4555554 3444 445555554 88
Q ss_pred EEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC---CcEEEEeccCCC
Q 001318 1008 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1068 (1101)
Q Consensus 1008 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d---g~v~vW~~~~~~ 1068 (1101)
++++..+.....+. ++.. +.+. .+...+....+.++.+.- ++++.+|+.+++
T Consensus 353 v~~~~~~~~~~~~~----~p~~---g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 353 VYDLDDGKESREIP----LPEA---GSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETT-TEEEEEEE----SSSS---SEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEECCCCcEEeeec----CCcc---eEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99998444444444 2211 1122 444444333444444433 578888888887
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0085 Score=70.98 Aligned_cols=151 Identities=13% Similarity=0.141 Sum_probs=97.7
Q ss_pred CCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC-eEEEeeeec---CCccEEEEEecCCcEEEEecCCCCceeee-cC
Q 001318 464 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHK---ENIQFIFSTALDGKIKAWLYDNLGSRVDY-EA 538 (1101)
Q Consensus 464 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~v~~~~~---~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~ 538 (1101)
++.++|........|+-.|++.|+.+..+..|... |..++-... -+..-.+.|-.++.+..||.+-.+..... ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34434555566788999999999999999887654 666652211 01234566777889999999864321110 00
Q ss_pred CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC
Q 001318 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 618 (1101)
Q Consensus 539 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 618 (1101)
+ .+ .++..+.|++-+.+| +|++|+.+|.||+||--..+....+++-+ .+|.+|..+.||+
T Consensus 572 k---------------~Y--~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGk 631 (794)
T PF08553_consen 572 K---------------QY--SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGK 631 (794)
T ss_pred c---------------cc--ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCc
Confidence 0 00 122345555555554 59999999999999954333333444333 4799999999999
Q ss_pred EEEEEeCCCcEEEEEec
Q 001318 619 LLAVSTNDNGIKILATS 635 (1101)
Q Consensus 619 ~l~~~~~dg~i~iw~~~ 635 (1101)
++++.+. ..+.+++..
T Consensus 632 wilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 632 WILATCK-TYLLLIDTL 647 (794)
T ss_pred EEEEeec-ceEEEEEEe
Confidence 9987764 677777753
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.16 Score=54.43 Aligned_cols=223 Identities=13% Similarity=0.135 Sum_probs=126.5
Q ss_pred ecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee--------
Q 001318 814 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-------- 885 (1101)
Q Consensus 814 s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-------- 885 (1101)
...++.|+.|.++.|.+++........... +...|..+...+ +-+.|++-+ |+.++++++..-......
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 346788999995449999993333222222 223399999998 544444433 599999998764333210
Q ss_pred ------cCcccCeeEEE--EcCCC-CEEEEEeCCCceEEEeCCCcccc---cceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 886 ------KGHSKRITGLA--FSHAL-NVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 886 ------~~h~~~V~~l~--~s~dg-~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
......+...+ -...+ .+|+.+ ..++|.+|........ ....+... ..+..++|. +..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFL--GNK 150 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEe--CCE
Confidence 11223344444 11233 445544 4558999988764211 11222222 367888888 667
Q ss_pred EEEEeCCeEEEEEcCCceeeeeccCCCC----------CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeee--ecC
Q 001318 954 FLVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RIN 1021 (1101)
Q Consensus 954 la~~~d~~v~vwd~~~~~~~~~~~~~~h----------~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~--~~~ 1021 (1101)
++++..+...+.|+.++.....+..... ..++..+... ++.+|++- |..-.+.|. .|+... .+.
T Consensus 151 i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~ 226 (275)
T PF00780_consen 151 ICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ 226 (275)
T ss_pred EEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE
Confidence 7777788899999997766544432111 2234444443 56777643 333333343 444332 222
Q ss_pred CCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1022 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1022 ~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
.. ..|.++++.. .+|++.+. +.|.||++.+++
T Consensus 227 W~-----------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 227 WS-----------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred cC-----------CchhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence 11 2244677754 46776665 559999999997
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.023 Score=67.53 Aligned_cols=148 Identities=11% Similarity=0.139 Sum_probs=98.8
Q ss_pred CCcEEEEE-eccCeEEEEEeecceEeeeecCcccC-eeEEEEcC-----CCCEEEEEeCCCceEEEeCCCcccccceeee
Q 001318 858 DNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSH-----ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 930 (1101)
Q Consensus 858 d~~~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~-----dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 930 (1101)
+.++|..- .....|+-.|+..|+.+..+..|... |..++-.. ....-+.|-.+..+..||.+-.. ..+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence 44454443 35678999999999999999888754 55543321 12334556667789999987532 11111
Q ss_pred cCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEE
Q 001318 931 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 931 ~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
.............+++-+.+|...+.+.+|.||+||-. |...++..+ +-..+|.+|..+.||++|++.+ +..+.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 11111122246678888888887777899999999954 333444332 5578999999999999988665 66788887
Q ss_pred c
Q 001318 1011 A 1011 (1101)
Q Consensus 1011 ~ 1011 (1101)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0024 Score=65.98 Aligned_cols=143 Identities=15% Similarity=0.207 Sum_probs=97.4
Q ss_pred HhHhcCcc--------ccHHHHHHHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHh
Q 001318 15 LEQESGFF--------FNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVK 86 (1101)
Q Consensus 15 l~~esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~ 86 (1101)
|-++|.+. .++...+++|++|+...|+..+..=...-.+. ...+-|.++.|+|+||+..+++.+|+.+.++
T Consensus 138 L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~-~S~lEf~lRlQefIELi~~~~~~~Ai~~akk 216 (389)
T KOG0396|consen 138 LGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKE-ESSLEFQLRLQEFIELIKVDNYDKAIAFAKK 216 (389)
T ss_pred HHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-cchhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 66777766 24888889999999999888886531111111 2237899999999999999999999999999
Q ss_pred ccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-chHHH-HHHHH-HHhhcccCCccccccccCCCCC-hHHHHHHH
Q 001318 87 DLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-TKSAR-SIMLV-ELKKLIEANPLFRDKLQFPNLK-NSRLRTLI 162 (1101)
Q Consensus 87 ~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-~~~~r-~~l~~-~l~~~i~~~~~~~~~~~~~~~p-~~rL~~ll 162 (1101)
.|.|....+.++++....+|.++...+.. .|.+ ....| +.|.+ -++++.+--- +| ..+|..+|
T Consensus 217 ~f~~~~~~~~~~Lk~a~g~laF~~~t~~s---ky~~l~~~~rw~~l~~lF~s~a~~l~~----------i~~~~~L~~~l 283 (389)
T KOG0396|consen 217 HFAPWAKSHKSDLKLAMGLLAFPKYTSSS---KYLNLLTADRWSVLADLFLSEALKLFG----------IPINPALTIYL 283 (389)
T ss_pred HHhhhhhhhHHHHHHHHHhhcCccccCcc---cccCcccHHHHHHHHHHhhHHHHHHhC----------CCCCcHHHHHH
Confidence 99999887899999999999887543222 2433 23344 33322 2233322211 22 23588888
Q ss_pred HHhHHHHHH
Q 001318 163 NQSLNWQHQ 171 (1101)
Q Consensus 163 ~qa~~~q~~ 171 (1101)
+..+..|.-
T Consensus 284 ~~GLsalKT 292 (389)
T KOG0396|consen 284 QAGLSALKT 292 (389)
T ss_pred Hhhhhhccc
Confidence 877776643
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0022 Score=70.92 Aligned_cols=95 Identities=17% Similarity=0.368 Sum_probs=73.4
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeE-EEEEecCCCeEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLFG 423 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~la 423 (1101)
...|.-+.|+|.-. |+|++..+|.|.+..+. .+.+.+ +.-|...++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEE
Confidence 45678899999988 79999999999998887 444432 344555666 999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH 462 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~ 462 (1101)
+|-.||+|++-|++++..+... ...-...|.++-|++
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 9999999999999998766532 222345677777753
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.045 Score=59.62 Aligned_cols=150 Identities=11% Similarity=0.109 Sum_probs=96.0
Q ss_pred CeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEE-----EEEecCCcEEEEecCCCCc-eeeecC
Q 001318 465 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGS-RVDYEA 538 (1101)
Q Consensus 465 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-----~s~~~dg~i~~wd~~~~~~-~~~~~~ 538 (1101)
..+++.++.....++--|++.|+.+..++-|.. |+-+.+.++..+..+ +.|-.|..|.-||.+-... ......
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 334677888888899999999999999987766 655666554443332 3344578888899874332 111000
Q ss_pred CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC
Q 001318 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 618 (1101)
Q Consensus 539 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 618 (1101)
. -.| .++..+.|.+-..+ .++++||.+|.|++||--.......+++-+. .|..|..+.+|+
T Consensus 424 ~------kqy----------~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~--~I~hVdvtadGK 484 (644)
T KOG2395|consen 424 S------KQY----------STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGD--AIKHVDVTADGK 484 (644)
T ss_pred c------ccc----------ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCC--ceeeEEeeccCc
Confidence 0 000 01123344444433 3699999999999999733333444554444 789999999999
Q ss_pred EEEEEeCCCcEEEEEec
Q 001318 619 LLAVSTNDNGIKILATS 635 (1101)
Q Consensus 619 ~l~~~~~dg~i~iw~~~ 635 (1101)
+|++.+ +..+.+.++.
T Consensus 485 wil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 485 WILATC-KTYLLLIDTL 500 (644)
T ss_pred EEEEec-ccEEEEEEEe
Confidence 988766 4667666653
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.077 Score=58.29 Aligned_cols=175 Identities=15% Similarity=0.144 Sum_probs=102.7
Q ss_pred CeEEEEECCCCceeeEecCCCC-CeEEE---EEecC---CCcEEEEEec----------cCeEEEEEeecc----eEeee
Q 001318 826 GKISLFNMMTFKTMATFMPPPP-AATFL---AFHPQ---DNNIIAIGMD----------DSSIQIYNVRVD----EVKSK 884 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~-~i~~l---~~sp~---d~~~lasg~~----------dg~v~vwd~~~~----~~~~~ 884 (1101)
+.|++.|..+.+.+.++.-... .+.++ .|..+ ...+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4688899888887766543222 34443 33321 1578888863 299999999883 12222
Q ss_pred e--cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcc-cccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCC
Q 001318 885 L--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE-KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 960 (1101)
Q Consensus 885 l--~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~ 960 (1101)
+ ....++|++++-- +|. |+.+. .+.|.+|++...+ ........ . .+........+.+++++ ..+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~---~------~~~i~sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD---S------PFYITSLSVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE----B------SSSEEEEEEETTEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheec---c------eEEEEEEeccccEEEEEEccc
Confidence 2 2357889998876 444 44433 4789999998866 22211111 1 22334444446677776 446
Q ss_pred eEEEEEcCC-ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 961 QLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 961 ~v~vwd~~~-~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
.+.++.... ...+..+..+.....++++.|-+|++.++++..+|.|.++...
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 666654332 2222222222336678999998777899999999999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.05 E-value=1.3 Score=53.73 Aligned_cols=215 Identities=14% Similarity=0.069 Sum_probs=118.5
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccC-----CeeEEEEcC----------------CCCeEEEEEecCCCc
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG-----GVNDIAFSH----------------PNKQLCVITCGDDKT 477 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~-----~V~~~~~s~----------------d~~~~~l~s~~~d~~ 477 (1101)
+..|..++.++.|.-.|..+|+.+-....-..... ....+++-. .+. .++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCCe
Confidence 66777777788888888888886643211000000 011122211 233 4777888999
Q ss_pred EEEEeCCCCceEEEecCcccCeE-------------EEeeeecCCccEEEEEec----------CCcEEEEecCCCCcee
Q 001318 478 IKVWDATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTAL----------DGKIKAWLYDNLGSRV 534 (1101)
Q Consensus 478 i~iwd~~~~~~~~~~~~h~~~v~-------------~v~~~~~~~~~~l~s~~~----------dg~i~~wd~~~~~~~~ 534 (1101)
+.-.|.++|+.+..+. ..+.|. .+.-.+--.+..++.|+. +|.|+-+|..+++...
T Consensus 272 LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 272 LIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 9999999999987764 222221 000000001135666642 6889999999999888
Q ss_pred eecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE------------------eCCCcEEEEECCCCcee
Q 001318 535 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA------------------GDDFSIKFWDMDSVQLL 596 (1101)
Q Consensus 535 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~dg~i~iwd~~~~~~~ 596 (1101)
.+.......... .+.+ ..+...........++++....++.+ ...+.|.-.|+++|+..
T Consensus 351 ~~~~g~p~~~~~--~~~g-~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~ 427 (764)
T TIGR03074 351 AWDPGNPDPTAP--PAPG-ETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER 427 (764)
T ss_pred EEecCCCCcccC--CCCC-CEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence 765321111100 0112 12221111222334444444333331 12466788899999998
Q ss_pred EEEcCCCCC-------CCcCeEEEcc-CCC---EEEEEeCCCcEEEEEecCccc
Q 001318 597 TSIDADGGL-------PASPRIRFNK-DGC---LLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 597 ~~~~~~~~~-------~~v~~~~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
..++...|. ....-+.+.. +|+ .++.++.+|.+.++|-++|+.
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 888753221 0011122333 553 888999999999999999943
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.14 Score=56.33 Aligned_cols=220 Identities=13% Similarity=0.102 Sum_probs=119.6
Q ss_pred CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE---EecC----CCeEEEEEc----------CCe
Q 001318 368 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI---WSPD----GSLFGVAYS----------RHI 430 (1101)
Q Consensus 368 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~---~spd----g~~las~~~----------d~~ 430 (1101)
..|++.|..+.+.+....++ ....|.+++ |..+ ..+|++|.. .|.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred cEEEEEeCCCCeEEEEEECC------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 46788888888877655443 122344443 3332 567887753 289
Q ss_pred EEEEEccCC----ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc-eEEEec-CcccCeEEEee
Q 001318 431 VQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE-GHEAPVYSVCP 504 (1101)
Q Consensus 431 i~iwd~~~~----~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~v~~ 504 (1101)
|.++++... ..++..... ...++|++++-- .+. ++++. .+.|.+|++...+ .+..-. .....+.++..
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred EEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 999999984 234333222 357889999876 333 33333 3789999998888 443222 12235555553
Q ss_pred eecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCc
Q 001318 505 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 584 (1101)
Q Consensus 505 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 584 (1101)
.. ++++.|...+.+.++.++...... .-++-... ...+..+.+-++++.++++..+|.
T Consensus 138 --~~--~~I~vgD~~~sv~~~~~~~~~~~l---------~~va~d~~---------~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 138 --FK--NYILVGDAMKSVSLLRYDEENNKL---------ILVARDYQ---------PRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp --ET--TEEEEEESSSSEEEEEEETTTE-E---------EEEEEESS----------BEEEEEEEE-SSSEEEEEETTSE
T ss_pred --cc--cEEEEEEcccCEEEEEEEccCCEE---------EEEEecCC---------CccEEEEEEecCCcEEEEEcCCCe
Confidence 23 489999888888887655422111 11111111 112334444434457888999999
Q ss_pred EEEEECCC-------C--ceeEEEcCCCCCCCcCeE---EEcc--CC------CEEEEEeCCCcEEEEEe
Q 001318 585 IKFWDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 585 i~iwd~~~-------~--~~~~~~~~~~~~~~v~~~---~~s~--~~------~~l~~~~~dg~i~iw~~ 634 (1101)
+.++.... + +.......+-+ ..|+++ ++.| .+ ..++.++.+|.|...-.
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 99887752 2 22222221211 235555 4444 12 24888889999985543
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.31 Score=53.99 Aligned_cols=93 Identities=18% Similarity=0.295 Sum_probs=61.1
Q ss_pred EEEEecCCCeEEEEEcCCeEEE---EEccC-C--ce---eeeeeeecccc-CCeeEEEEcCC---C------CeEEEEEe
Q 001318 412 RVIWSPDGSLFGVAYSRHIVQI---YSYHG-G--DE---VRQHLEIDAHV-GGVNDIAFSHP---N------KQLCVITC 472 (1101)
Q Consensus 412 ~l~~spdg~~las~~~d~~i~i---wd~~~-~--~~---~~~~~~l~~h~-~~V~~~~~s~d---~------~~~~l~s~ 472 (1101)
.++.+|+|++||.+..+..+.+ |+... + .. +.-...+.... ..|+++.|-|- . ...+++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988887776 64421 1 11 11111222111 46777776442 1 12289999
Q ss_pred cCCCcEEEEeCCCCceEEEecCcccCeEEEeee
Q 001318 473 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 505 (1101)
Q Consensus 473 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 505 (1101)
..+|.|++|. ++|..+..-.-|..+|..+...
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence 9999999999 6888776655688888887653
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.3 Score=52.18 Aligned_cols=231 Identities=13% Similarity=0.063 Sum_probs=131.4
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCe
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 430 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 430 (1101)
-.|.|+...|+.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++. .-
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~--~g 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE--HG 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc--cc
Confidence 35677777777787778899999998775432 11 223445555555555555543 33
Q ss_pred EEEEEccCCceeeeeeeec-cc-cCCeeEEEEcCCCCeEEEEEecC------C---CcEEEEeCC-CCceEEEecCcccC
Q 001318 431 VQIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGD------D---KTIKVWDAT-NGAKQYIFEGHEAP 498 (1101)
Q Consensus 431 i~iwd~~~~~~~~~~~~l~-~h-~~~V~~~~~s~d~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~~~~h~~~ 498 (1101)
+.+++.+++.......... +. ...-+.+...|+|. +.++... + ..-.+|-+. .+..++.+..+-..
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 6777776665433222222 22 24567889999998 3333222 0 112445444 57777777766667
Q ss_pred eEEEeeeecCCccEEEEEec-CCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 499 VYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
-+.++|++ |++.++.+.. .+.|.-|++...... .... ... .......+..-.++...+|++.+
T Consensus 165 ~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~----~~~~-~~~---------~~~~~~~G~PDG~~vDadG~lw~ 228 (307)
T COG3386 165 PNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGP----IGGR-RGF---------VDFDEEPGLPDGMAVDADGNLWV 228 (307)
T ss_pred cCceEECC--CCCEEEEEeCCCCeEEEEecCcccCc----cCCc-ceE---------EEccCCCCCCCceEEeCCCCEEE
Confidence 78899865 4455555544 577877777631100 0000 000 11111112233456666777665
Q ss_pred EEeCCC-cEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeC
Q 001318 578 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 625 (1101)
Q Consensus 578 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 625 (1101)
++...| .|.+|+.+ ++.+..+.... ..+.+++|-- +.+.|++.+.
T Consensus 229 ~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 229 AAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ecccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence 544444 89999998 88888887663 2477788854 4555554443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0024 Score=43.78 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=34.3
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
+++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.51 Score=48.27 Aligned_cols=187 Identities=9% Similarity=0.119 Sum_probs=115.0
Q ss_pred CCCeeEEEEecCCCEEEEEe-CC--eEEEEECCCCceeeEecCCCC-CeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg--~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
......+.|..+|.++-+.+ -| .|+.+|+.+++......-... ---.++.. ++++....-.++...+||..+.+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 34456788888888777766 44 699999999987766442222 12334444 45666667789999999999998
Q ss_pred EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC
Q 001318 881 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 959 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d 959 (1101)
.+.++.- .+.=+.++ .||+.|+.......+.++|.++-+..... .+..+..+ -..+.-+-+- +|...|-. ..
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i--~V~~~g~p-v~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI--QVTDNGRP-VSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE--E-EETTEE----EEEEEEE-TTEEEEEETTS
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEE--EEEECCEE-CCCcEeEEEE-cCEEEEEeCCC
Confidence 8888864 34567787 46777777766777999998875543322 22221110 1233445554 66655554 67
Q ss_pred CeEEEEEcCCceeeeeccCC----------C---CCCCeeEEEEcCCCCEE-EEE
Q 001318 960 TQLAIFETTKLECVKQWVPR----------E---SSAPITHATFSCDSQLV-YAC 1000 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~----------~---h~~~i~~l~~spdg~~l-~s~ 1000 (1101)
..|...|..+|+.+..+... . ...-...+|+.|....| +||
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 78888999999987765321 0 13468899998866654 444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.6 Score=51.84 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=56.3
Q ss_pred EEEEecCCCEEEEEeCCeEE----EEECC-CC----ceeeE----ecCCC-CCeEEEEEecC----------CCcEEEEE
Q 001318 810 CFALSKNDSYVMSASGGKIS----LFNMM-TF----KTMAT----FMPPP-PAATFLAFHPQ----------DNNIIAIG 865 (1101)
Q Consensus 810 ~~~~s~dg~~la~~sdg~i~----vwd~~-~~----~~~~~----~~~~~-~~i~~l~~sp~----------d~~~lasg 865 (1101)
.++.+|++++||.+....+. .|+.. .+ ..... +.... ..|+++.+-|- |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 57889999999999854433 35331 11 11111 22111 45776665432 46899999
Q ss_pred eccCeEEEEEeecceEeeeecCcccCeeEEEEc
Q 001318 866 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 866 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 898 (1101)
..+|.|++|.. +|.++..-.-|..+|..+.+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999995 566555545577777777764
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.45 Score=50.50 Aligned_cols=157 Identities=11% Similarity=0.087 Sum_probs=80.8
Q ss_pred cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec--ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC-C
Q 001318 843 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS-D 919 (1101)
Q Consensus 843 ~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~--~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~-~ 919 (1101)
....+.+..+..++ |+++++++..-..+.-||--. ..... ..-+.+|.+|.|+||+.+.+.+ ..|.|+.=+. .
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 34456788888898 999999886655556776432 22222 2245789999999998776644 7787877762 2
Q ss_pred CcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeecc-CCCCCCCeeEEEEcCCCCEEE
Q 001318 920 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVY 998 (1101)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~-~~~h~~~i~~l~~spdg~~l~ 998 (1101)
..+.-......... ....+..++|.+++...|++..+.+ +.....|+.-..-. ...-...++.+.|.++.+-++
T Consensus 217 ~~~~w~~~~~~~~~----~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 217 DGETWSEPIIPIKT----NGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp EEEEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred CccccccccCCccc----CceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence 21110000011111 1134789999999999998888755 34444444322221 112255788999987766666
Q ss_pred EEEcCCeEEEE
Q 001318 999 ACFLDATVCVF 1009 (1101)
Q Consensus 999 s~s~dg~v~vw 1009 (1101)
.| .+|.|--|
T Consensus 292 lG-~~G~ll~~ 301 (302)
T PF14870_consen 292 LG-QDGVLLRY 301 (302)
T ss_dssp E--STTEEEEE
T ss_pred EC-CCcEEEEe
Confidence 55 78887655
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.96 Score=49.60 Aligned_cols=241 Identities=13% Similarity=0.099 Sum_probs=119.6
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCce---eeEe----cCCCCCeEEEEEecC---CCcEEEEEecc--------
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF----MPPPPAATFLAFHPQ---DNNIIAIGMDD-------- 868 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~---~~~~----~~~~~~i~~l~~sp~---d~~~lasg~~d-------- 868 (1101)
..++|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 36789999999988876699999999 44443 2222 223456889999992 14444433321
Q ss_pred CeEEEEEeecc-------e-EeeeecC---cccCeeEEEEcCCCCEEEEEeCCCc-----------eEEEeCCC-ccccc
Q 001318 869 SSIQIYNVRVD-------E-VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQ-----------LCVWSSDG-WEKQK 925 (1101)
Q Consensus 869 g~v~vwd~~~~-------~-~~~~l~~---h~~~V~~l~~s~dg~~l~s~s~D~~-----------v~iwd~~~-~~~~~ 925 (1101)
..|.-|.+..+ + ++..+.. ..-.-..|.|.|||.+.++.+..+. -+|+.+.. +....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24444444332 1 1112221 1123456999999988887765443 12222211 00000
Q ss_pred c---------eeeecCCCCCCCCCCCeEEEEcCC-CcEEEE--EeCCeEEEEEcCCceee--------------------
Q 001318 926 N---------RFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV-------------------- 973 (1101)
Q Consensus 926 ~---------~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~--~~d~~v~vwd~~~~~~~-------------------- 973 (1101)
. .......|. .....++|+|. |.+.++ +.+..=.|.-+..+.-.
T Consensus 162 dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0 000000011 12367899999 777776 44433333333322110
Q ss_pred -------eeccCCCCCCCeeEEEEcC-------CCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceE
Q 001318 974 -------KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1039 (1101)
Q Consensus 974 -------~~~~~~~h~~~i~~l~~sp-------dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1039 (1101)
..+.. .+...+..+.|-. .|.++++.-..+.|....+.++..+.... ..+ . .....++.
T Consensus 238 ~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~~ 310 (331)
T PF07995_consen 238 SCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPRD 310 (331)
T ss_dssp S-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EEE
T ss_pred CCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCceE
Confidence 00001 1235667777753 45566666666778888877553332211 011 1 11134668
Q ss_pred EEEeCCCCCEEEEEecCCcEE
Q 001318 1040 IAAHPQEPNEFALGLSDGGVH 1060 (1101)
Q Consensus 1040 i~~~~~d~~~l~s~~~dg~v~ 1060 (1101)
+++.| ||.+.++.+.+|.|+
T Consensus 311 v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 311 VAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEET-TSEEEEEE-TTTTEE
T ss_pred EEEcC-CCeEEEEECCCCeEe
Confidence 99999 788888888888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.63 E-value=2.7 Score=51.15 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=51.9
Q ss_pred CeEEEEEcCCceeeeeccCCCCC----------------CCeeEEEEcCCCCEEEE-EEcCCeEEEEEcCCceeeeecCC
Q 001318 960 TQLAIFETTKLECVKQWVPRESS----------------APITHATFSCDSQLVYA-CFLDATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~----------------~~i~~l~~spdg~~l~s-~s~dg~v~vwd~~~~~~~~~~~~ 1022 (1101)
|.|.-+|+.+++.+-......+. .+...=...-.|.+++. |+.|+.++-+|.++|+.+-+.+
T Consensus 641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~- 719 (764)
T TIGR03074 641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDLSTGKELWKAR- 719 (764)
T ss_pred EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEECCCCceeeEee-
Confidence 67889999999877554432110 01111112235667665 7899999999999999998877
Q ss_pred CcccCCCCCCCCccceEEEEe-CCCCCEEEEE
Q 001318 1023 SAYLPAGVSSSNVHPLVIAAH-PQEPNEFALG 1053 (1101)
Q Consensus 1023 ~~~~~~~~~~~~v~~~~i~~~-~~d~~~l~s~ 1053 (1101)
++.+ +...=+.|. .+..+|++..
T Consensus 720 ---l~~~-----~~a~P~tY~~~~GkQYVvi~ 743 (764)
T TIGR03074 720 ---LPAG-----GQATPMTYMGKDGKQYVVIV 743 (764)
T ss_pred ---CCCC-----cccCCEEEEecCCEEEEEEE
Confidence 5554 222235565 4233455543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.047 Score=64.69 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=70.9
Q ss_pred EEEEEecCCcEEEEeCCCcce-eEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccC
Q 001318 360 LLLVGTNVGDIGLWEVGSRER-LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 438 (1101)
Q Consensus 360 llatg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 438 (1101)
.++.|+..|.|...|+.+.-. .+ | -..-.++|++++|+.||++++.|-.+|.|.+||+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~------~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLH------Q-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhh------c-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 488888889999888865311 11 0 112257999999999999999999999999999999
Q ss_pred CceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC
Q 001318 439 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 483 (1101)
Q Consensus 439 ~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 483 (1101)
++.++.+.........|..+.+..++. .++++...|. +|.+
T Consensus 162 ~k~l~~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 AKILKVITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcceeeeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 887764433222222444455555665 6788877776 5654
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0085 Score=66.50 Aligned_cols=92 Identities=14% Similarity=0.265 Sum_probs=77.0
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeE-EEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
...+.-+.|+|.-..+|.+. +|.|.+..+. .+.+.++.-+...++ +++|.| ||++||+|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 45678899999999999998 8999999988 888889887777777 999999 8999999999999999999998766
Q ss_pred eee-cCcccCeeEEEEc
Q 001318 883 SKL-KGHSKRITGLAFS 898 (1101)
Q Consensus 883 ~~l-~~h~~~V~~l~~s 898 (1101)
... ..-...|.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 552 2234567777775
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.23 Score=58.76 Aligned_cols=224 Identities=12% Similarity=0.068 Sum_probs=113.8
Q ss_pred eEEEEECCCCceee--EecCCCCCeEEEEEecCCCcEEEEEecc------CeEEEEEeecce--EeeeecCcccCeeEEE
Q 001318 827 KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE--VKSKLKGHSKRITGLA 896 (1101)
Q Consensus 827 ~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd~~~~~--~~~~l~~h~~~V~~l~ 896 (1101)
.+..||..+.+... .+..... -.+++. - ++.++++|+.+ ..+..||..+.. .+..+.........+.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 46678877654321 1211111 122333 3 67888888854 357788877653 2222221111222222
Q ss_pred EcCCCCEEEEEeCCC-----ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC-----------
Q 001318 897 FSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----------- 959 (1101)
Q Consensus 897 ~s~dg~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d----------- 959 (1101)
-+|+..+.||.++ ++..||..+.+-.....+..... ....+ .-+|+..+.| .+
T Consensus 350 --~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~------~~~~~--~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 350 --IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS------SYGMC--VLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred --ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc------cccEE--EECCEEEEEeCCCccccccccccc
Confidence 3678888888764 37789887643211111111110 11122 2356666664 22
Q ss_pred ------------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC------CeEEEEEcCC-ceeeeec
Q 001318 960 ------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRI 1020 (1101)
Q Consensus 960 ------------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d------g~v~vwd~~~-~~~~~~~ 1020 (1101)
..+..||..+.+-...-... ......-+..-+|+..+.|+.+ ..|..||..+ .+....-
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 35778998877654322211 1111111223367777777654 2467899887 4443211
Q ss_pred CCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCC--cEEEEeccCCCccccCCCCCC
Q 001318 1021 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG--GVHVFEPLESEGKWGVPPPVD 1078 (1101)
Q Consensus 1021 ~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg--~v~vW~~~~~~~~~~~~~~~~ 1078 (1101)
. ++.. .....++-. ++++.++|+.|| ++..+|+.+.+ |....|.-
T Consensus 498 ~----m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~ 544 (557)
T PHA02713 498 T----TESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQH 544 (557)
T ss_pred c----cCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhc
Confidence 1 2211 111123332 578999999998 77778887755 66655543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.54 Score=48.04 Aligned_cols=199 Identities=14% Similarity=0.185 Sum_probs=119.2
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc-ccCCCCCCCCeeEEEEec
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~-~~~~~~~~~~i~~~~~s~ 815 (1101)
-...+.+++|+|+.+.|++......-.||=. .+|.++.. .+.+ -.....+.+..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt----------------------~~GdlirtiPL~g---~~DpE~Ieyig 138 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELT----------------------KEGDLIRTIPLTG---FSDPETIEYIG 138 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEe----------------------cCCceEEEecccc---cCChhHeEEec
Confidence 4455999999999999999888766555422 23433322 2222 34456788888
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEe----------cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce-E--
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATF----------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-V-- 881 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~----------~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~-- 881 (1101)
+|+++++-- ++.+.++.+.....+..+ .......-.++|+| ..+.|..+-+-.-+.||.+..+. .
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence 888887776 788888877654322211 11144678899999 55666666666777777665322 1
Q ss_pred eeeecCc-------ccCeeEEEEcCC-CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCC---CCCCCCeEEEEcCC
Q 001318 882 KSKLKGH-------SKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT---PTAQSDTRVQFHQD 950 (1101)
Q Consensus 882 ~~~l~~h-------~~~V~~l~~s~d-g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~d 950 (1101)
+.....+ -..|.++.|.+. +.+||-+.+++.+.-.|....-. ..+....|.. ........++..++
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~---~~lsL~~g~~gL~~dipqaEGiamDd~ 294 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVI---ELLSLTKGNHGLSSDIPQAEGIAMDDD 294 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCee---eeEEeccCCCCCcccCCCcceeEECCC
Confidence 1111112 234677788754 56677777777777777766431 1222222221 11124467888888
Q ss_pred CcEEEEEeCCeEEE
Q 001318 951 QIHFLVVHETQLAI 964 (1101)
Q Consensus 951 g~~la~~~d~~v~v 964 (1101)
|...+++.-+-...
T Consensus 295 g~lYIvSEPnlfy~ 308 (316)
T COG3204 295 GNLYIVSEPNLFYR 308 (316)
T ss_pred CCEEEEecCCccee
Confidence 88777765554433
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.17 Score=43.82 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=47.6
Q ss_pred eeEEEE---cCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEec
Q 001318 455 VNDIAF---SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527 (1101)
Q Consensus 455 V~~~~~---s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~ 527 (1101)
|++|++ ..||.. .|+.|+.|..|+||+ ....+..+. ....|.+++-. .. ..++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~--~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSL--GG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEc--CC-CEEEEEecCCEEEEEeC
Confidence 455554 445555 799999999999997 446677776 45567777743 22 57889999999988865
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.042 Score=65.06 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=79.0
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 497 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 497 (1101)
-+.+++.|+..|.|-..|+.+. +++...-..-.++|++++|+.+|+ .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667899999999999998774 222111222356999999999999 788899999999999999999999988888
Q ss_pred CeEEEeeee-cCCccEEEEEecCCcEEEEecC
Q 001318 498 PVYSVCPHH-KENIQFIFSTALDGKIKAWLYD 528 (1101)
Q Consensus 498 ~v~~v~~~~-~~~~~~l~s~~~dg~i~~wd~~ 528 (1101)
+++++-+.. ..++..++++...|. +|.+.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 877765432 233346888877776 56543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.074 Score=59.10 Aligned_cols=160 Identities=13% Similarity=0.142 Sum_probs=90.3
Q ss_pred CCCeEEEEEecCCCcEEEEEe--ccCeEEEEEeecceEeeeecCcccCeeEEEEcCC----CCEEEEEeCCCceEEEeCC
Q 001318 846 PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d----g~~l~s~s~D~~v~iwd~~ 919 (1101)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.++.|+|- -..|...-.-+.|.||.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 35678899984 444444432 344444322 2334444 34889999985 3345555667789999987
Q ss_pred Ccccccce--eeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCE
Q 001318 920 GWEKQKNR--FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 996 (1101)
Q Consensus 920 ~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~ 996 (1101)
........ .-++-.-..+-+.-...+.|+|....|++ .....-.++++......-.... ...+.|.|.+|.+||+.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE
Confidence 32221111 11111111111122356889999999988 4444334555543322222222 22678999999999998
Q ss_pred EEEEEcC-CeEEEEEcCCc
Q 001318 997 VYACFLD-ATVCVFSAANL 1014 (1101)
Q Consensus 997 l~s~s~d-g~v~vwd~~~~ 1014 (1101)
|+++-.. =.-+|||-...
T Consensus 170 LVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEeCCeEEEEEecCchh
Confidence 7765433 34788986544
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.41 E-value=1.4 Score=48.22 Aligned_cols=111 Identities=20% Similarity=0.263 Sum_probs=58.7
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC---CCeEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSLFG 423 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~la 423 (1101)
..+.|+|.|||+ +++ +...|.|++++ ..+.... .+. ++ ..+..........++++|+ ..+|.
T Consensus 3 ~P~~~a~~pdG~-l~v-~e~~G~i~~~~-~~g~~~~--~v~--~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLV-AERSGRIWVVD-KDGSLKT--PVA--DL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEE-EETTTEEEEEE-TTTEECE--EEE--E---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEE-EeCCceEEEEe-CCCcCcc--eec--cc--------ccccccccCCcccceeccccCCCCEEE
Confidence 468999999998 344 56699999999 4444311 110 00 1234555678899999994 33443
Q ss_pred E-EEcC--------CeEEEEEccCC-cee---eeee-eec---cccCCeeEEEEcCCCCeEEEEEec
Q 001318 424 V-AYSR--------HIVQIYSYHGG-DEV---RQHL-EID---AHVGGVNDIAFSHPNKQLCVITCG 473 (1101)
Q Consensus 424 s-~~~d--------~~i~iwd~~~~-~~~---~~~~-~l~---~h~~~V~~~~~s~d~~~~~l~s~~ 473 (1101)
+ .+.. ..|.-|....+ ..+ +.+. .+. .....-..|+|.|||. |++.+|+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~ 133 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD 133 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence 3 3321 24555555544 111 1111 111 1234567799999995 3555544
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.44 Score=56.23 Aligned_cols=235 Identities=9% Similarity=0.069 Sum_probs=129.5
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEecc-C-----eEEEEEeecce
Q 001318 815 KNDSYVMSAS-G------GKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRVDE 880 (1101)
Q Consensus 815 ~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~d-g-----~v~vwd~~~~~ 880 (1101)
..+..+++|+ . ..+..+|..++.......- ....-.++++. ++.+.++|+.| | .+..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3445566665 3 3588899887644332221 12223445554 57899999988 3 67788877643
Q ss_pred --EeeeecCcccCeeEEEEcCCCCEEEEEeCCCc-----eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 881 --VKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 881 --~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
.+..+...........+ +|...|+||.||. +-.||..+.+-.....+... .-..-...-+|+.
T Consensus 361 W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGKL 430 (571)
T ss_pred eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCEE
Confidence 23333322222222222 7888999999964 67777776442211111111 1122233446666
Q ss_pred EEE-EeC------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe-----EEEEEcCCceeeeecC
Q 001318 954 FLV-VHE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 954 la~-~~d------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~-----v~vwd~~~~~~~~~~~ 1021 (1101)
.++ |.+ ..+..||..+++....-.... ...-..++ .-++.+.+.|+.|+. |..||..+.+....-
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~- 507 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA- 507 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc-
Confidence 666 323 468899998877654432211 11112233 236778888887763 788998887665331
Q ss_pred CCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCC-----cEEEEeccCCCccccCCCC
Q 001318 1022 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1076 (1101)
Q Consensus 1022 ~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg-----~v~vW~~~~~~~~~~~~~~ 1076 (1101)
.++.. .....++-. ++.+.++|+.|| +|..||..+.+ |....+
T Consensus 508 ---~m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 508 ---PMTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred ---cCccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 12222 111122322 567888999887 57788777755 544433
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.22 Score=43.15 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=66.5
Q ss_pred eEEEEEec-CC---CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 410 VNRVIWSP-DG---SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 410 V~~l~~sp-dg---~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
|+++++.. || +.|++|+.|..|++|+-+. .+. ++. -.+.|++++-...++ ++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~~---F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGGR---FAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCCE---EEEEecCCEEEEEeC--
Confidence 66777776 33 5799999999999998664 333 233 246788888777654 888999999999973
Q ss_pred CceEEEecCcccCeEEEee-eecCCc-cEEEEEecCCcEE
Q 001318 486 GAKQYIFEGHEAPVYSVCP-HHKENI-QFIFSTALDGKIK 523 (1101)
Q Consensus 486 ~~~~~~~~~h~~~v~~v~~-~~~~~~-~~l~s~~~dg~i~ 523 (1101)
...+...+.. ..+.++++ ....+| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3334444432 23555553 222222 2577887777763
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.056 Score=58.95 Aligned_cols=145 Identities=10% Similarity=0.123 Sum_probs=100.0
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCC--EE-----EEEeCCCceEEEeCCCcccccceeeecC
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VL-----VSSGADSQLCVWSSDGWEKQKNRFLQIP 932 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~--~l-----~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 932 (1101)
-+|..+.....++--|++.|+.+..++-|.. |+-+.+.|+.+ .| +.|=.|..|.-||.+-.... .+...
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~ 422 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVV 422 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeee
Confidence 3455556667888889999999999998877 88888888753 22 23445777999998743221 22222
Q ss_pred CCCC-CCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001318 933 TGRT-PTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 933 ~~~~-~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
+++. .....-.|.+-..+|..++.+.+|.|++||- .+...++..+ +-..+|..+..+.||++|++.+ +.++.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 2221 1113456667777777666689999999998 5655555443 6688999999999999988554 667777765
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.51 Score=49.38 Aligned_cols=145 Identities=13% Similarity=0.052 Sum_probs=89.2
Q ss_pred CCeeEEEEecCCCEEEEEe--CCe--EEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE-eecce
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDE 880 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd-~~~~~ 880 (1101)
..+.+.++++|++.+|... ++. ++++.. +....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 444 555544 33333322 233788889999 677777777677767764 23332
Q ss_pred Ee-eeecC--cccCeeEEEEcCCCCEEEEEe---CCCceEEEeCCCcccc----cceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 881 VK-SKLKG--HSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQ----KNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 881 ~~-~~l~~--h~~~V~~l~~s~dg~~l~s~s---~D~~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
.. ..+.. -.+.|+++.+||||..+|... .++.|.+=-+...... .......... ....+..+.|.++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDD 176 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCC
Confidence 21 11111 112899999999999888665 3466776655432222 1111111111 1147889999999
Q ss_pred CcEEEEE
Q 001318 951 QIHFLVV 957 (1101)
Q Consensus 951 g~~la~~ 957 (1101)
+.+++.+
T Consensus 177 ~~L~V~~ 183 (253)
T PF10647_consen 177 STLVVLG 183 (253)
T ss_pred CEEEEEe
Confidence 9988874
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0079 Score=41.02 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=33.0
Q ss_pred ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 837 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 837 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
+....+..|...|.++.|++ ++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 45566777888999999999 778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=2.8 Score=51.06 Aligned_cols=196 Identities=10% Similarity=0.026 Sum_probs=101.9
Q ss_pred CCeeEEEEecCCCEEEEEeC--C----eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc------CeEEE
Q 001318 806 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQI 873 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sd--g----~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~v 873 (1101)
-.+..+.+||||++|+.+.| | .|++.|+.++..+...-... -..++|++ |++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999999998763 3 48999998876432221111 14599999 66655554332 36788
Q ss_pred EEeecc--eEeeeecCcccCee-EEEEcCCCCEEEEEeC---CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEE
Q 001318 874 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 947 (1101)
Q Consensus 874 wd~~~~--~~~~~l~~h~~~V~-~l~~s~dg~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 947 (1101)
+++.++ +....+........ .+..+.|+++++..+. ++.+.+++...........+....+ ....+ .
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~-~ 276 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD------HEYSL-D 276 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC------CEEEE-E
Confidence 888876 32333333223333 3344558887764433 4568888853321111111111111 11222 2
Q ss_pred cCCCcEEEEEeC----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 948 HQDQIHFLVVHE----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 948 s~dg~~la~~~d----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
+..+.+++.... ..|...++.+......+....-...|..+.++ .+.++++...+|.-+++-++
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 333333333322 23444455421112223322113478888887 34566677778875555443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.57 Score=51.06 Aligned_cols=238 Identities=12% Similarity=0.122 Sum_probs=109.9
Q ss_pred CCceEEeee-cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe---
Q 001318 749 SGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--- 824 (1101)
Q Consensus 749 ~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--- 824 (1101)
+.++|++.+ ..+.|+|.|+.+....+.-...-. ...+... . .-.....+-.-|+|++++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe---------~~ev~~k--~---g~s~PHT~Hclp~G~imIS~lGd~ 151 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIE---------PEEVFEK--T---GLSRPHTVHCLPDGRIMISALGDA 151 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE----------HHHHHHH--H----EEEEEEEEE-SS--EEEEEEEET
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeC---------HHHHHhh--c---CCCCCceeeecCCccEEEEeccCC
Confidence 345566666 468899999865433222111100 0000000 0 012233455568998888762
Q ss_pred C----CeEEEEECCCCceeeEecCCCC---CeEEEEEecCCCcEEEEEec--------------------cCeEEEEEee
Q 001318 825 G----GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGMD--------------------DSSIQIYNVR 877 (1101)
Q Consensus 825 d----g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~~--------------------dg~v~vwd~~ 877 (1101)
+ |.+.+.|-++.+.......... --...-|.| ..+.+++... ..++.+||+.
T Consensus 152 ~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~ 230 (461)
T PF05694_consen 152 DGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS 230 (461)
T ss_dssp TS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred CCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence 2 5699999998888777654322 245677788 6666666541 3589999999
Q ss_pred cceEeeeecCcc--cCeeEEEEcCC--CCE-EEEEeCCCceEEE-eCCCcccccceeeecCCCCC-------------CC
Q 001318 878 VDEVKSKLKGHS--KRITGLAFSHA--LNV-LVSSGADSQLCVW-SSDGWEKQKNRFLQIPTGRT-------------PT 938 (1101)
Q Consensus 878 ~~~~~~~l~~h~--~~V~~l~~s~d--g~~-l~s~s~D~~v~iw-d~~~~~~~~~~~~~~~~~~~-------------~~ 938 (1101)
+.+.++++.--. .....|.|..+ ..+ ++.+....+|..| .-+.++-.....+.+..... ..
T Consensus 231 ~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~ 310 (461)
T PF05694_consen 231 TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAV 310 (461)
T ss_dssp TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE
T ss_pred CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccC
Confidence 999999886432 23567777654 333 3333334444444 33444433344444433210 00
Q ss_pred CCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCc---eeeeeccCCCC--------------CCCeeEEEEcCCCCEEEE
Q 001318 939 AQSDTRVQFHQDQIHFLVV--HETQLAIFETTKL---ECVKQWVPRES--------------SAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 939 ~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~---~~~~~~~~~~h--------------~~~i~~l~~spdg~~l~s 999 (1101)
+.-|+.+.+|.|.++|.++ ..|.|+.||+... +++.+....+- .+...-+..|-||+.|..
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 2457999999999999995 7999999999763 33333322110 223467889999998876
Q ss_pred EE
Q 001318 1000 CF 1001 (1101)
Q Consensus 1000 ~s 1001 (1101)
.+
T Consensus 391 Tn 392 (461)
T PF05694_consen 391 TN 392 (461)
T ss_dssp E-
T ss_pred Ee
Confidence 54
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.6 Score=48.59 Aligned_cols=198 Identities=11% Similarity=0.094 Sum_probs=107.2
Q ss_pred ccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCcee-
Q 001318 701 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT- 779 (1101)
Q Consensus 701 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~- 779 (1101)
...+++-+.||.+.+++-+.......+..+-+| ..+.|.+....+++++.+..+..|..+.-....+....
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llP--------gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~ 216 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLP--------GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQ 216 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCC--------cCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccc
Confidence 577888899999999997754322222222222 35788888888999999999998887532221111100
Q ss_pred ---------eeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeE
Q 001318 780 ---------ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT 850 (1101)
Q Consensus 780 ---------~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~ 850 (1101)
...-..-|...-|.. --.|..+.++.....+++-+..++.+.+. +|......+-.-.+..
T Consensus 217 ~~~~~~~~~~k~l~~dWs~nlGE~----------~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~ 285 (418)
T PF14727_consen 217 SGTEQDISSGKKLNPDWSFNLGEQ----------ALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSC 285 (418)
T ss_pred ccccccccccccccceeEEECCce----------eEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEecCCceee
Confidence 000011232222211 11123333333445566666777777776 3544433332222222
Q ss_pred EEEEe------cCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEE---cCCCCEEEEEeCCCceEEEeCCC
Q 001318 851 FLAFH------PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF---SHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 851 ~l~~s------p~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~---s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
...|. +..+..+++++.++++.||.= .+++-..+....+| ++.. ..-...|++-+.+|.+.+-=+-|
T Consensus 286 ~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 286 FCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred EEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 22222 211235888999999999963 33333333223333 3332 22345788899999998876665
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.018 Score=56.04 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=71.5
Q ss_pred CCEEEEEe-CCeEEEEECCCC-ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcc-cCee
Q 001318 817 DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRIT 893 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~ 893 (1101)
+.-+++|. +|.|++|+..-. .....+......|.++.-.-+++.+..+++.||.||.|++.-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34566666 899999987622 22222222233344433333366799999999999999999998888887787 5666
Q ss_pred EEEEcCCCCEEEEE--eCCCceEEEeCCC
Q 001318 894 GLAFSHALNVLVSS--GADSQLCVWSSDG 920 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~--s~D~~v~iwd~~~ 920 (1101)
.+..+..++.|+++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666667777777 7777788887765
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.04 E-value=5.2 Score=48.30 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=70.6
Q ss_pred EEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEE--EEcCCceeeeecCC
Q 001318 945 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV--FSAANLKLRCRINP 1022 (1101)
Q Consensus 945 ~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~v--wd~~~~~~~~~~~~ 1022 (1101)
.++.|...++.++-...+++||+-+.+.++......-...|+.+++ .+..+++|...-.|.. |+-+..+++.-..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad- 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD- 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC-
Confidence 4666777788888888999999988777666554333567788877 4667777775555544 4544444443221
Q ss_pred CcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1023 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1023 ~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
...|.. |. ++.+- |-+.++.+..-|.+.+-+++..-
T Consensus 1016 -D~~pR~-----Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1016 -DPVPRH-----VT--ALELL--DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred -CCccce-----ee--EEEEe--cCCceeeccccCcEEEEECCCcc
Confidence 222222 33 44444 45678888888988888875543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.4 Score=50.20 Aligned_cols=149 Identities=15% Similarity=0.031 Sum_probs=88.3
Q ss_pred CeEEEEEecCCCcEEEEEe---ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe-CCCccc
Q 001318 848 AATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS-SDGWEK 923 (1101)
Q Consensus 848 ~i~~l~~sp~d~~~lasg~---~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd-~~~~~~ 923 (1101)
.+.+.++++ +++.+|... ....++++.. +.....+. -...++...|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999 676665544 3335555543 33233321 223688889999988777777677777774 223221
Q ss_pred ccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe----CCeEEEEEcC---Cc--eeeee-cc-CCCCCCCeeEEEEcC
Q 001318 924 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT---KL--ECVKQ-WV-PRESSAPITHATFSC 992 (1101)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----d~~v~vwd~~---~~--~~~~~-~~-~~~h~~~i~~l~~sp 992 (1101)
.. ..+...... ..|..+.+||||..+|... +++|.+--+. .+ ..+.. .. .......++.++|.+
T Consensus 101 ~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 101 EP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred ee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 11 111111110 1689999999999999833 5677766543 22 11100 01 012246899999999
Q ss_pred CCCEEEEEEcCCe
Q 001318 993 DSQLVYACFLDAT 1005 (1101)
Q Consensus 993 dg~~l~s~s~dg~ 1005 (1101)
++.+++.+...+.
T Consensus 176 ~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 176 DSTLVVLGRSAGG 188 (253)
T ss_pred CCEEEEEeCCCCC
Confidence 9998776665443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.32 Score=57.58 Aligned_cols=189 Identities=10% Similarity=0.076 Sum_probs=98.5
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCCceeeEecCC-CCCeEEEEEecCCCcEEEEEeccC-----eEEEEEeecc--
Q 001318 815 KNDSYVMSAS-G------GKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD-- 879 (1101)
Q Consensus 815 ~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~-- 879 (1101)
-++..+++|+ + ..+..||..+..-. .+..- .......+..- ++++.+.|+.++ .+..||..+.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE-CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 3666666665 3 24778888765432 22111 11111112222 688889998764 4888998764
Q ss_pred eEeeeecCcccCeeEEEEcCCCCEEEEEeCCC-----------------------ceEEEeCCCcccccceeeecCCCCC
Q 001318 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQIPTGRT 936 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~-----------------------~v~iwd~~~~~~~~~~~~~~~~~~~ 936 (1101)
..+..+.........+++ +|+..+.||.++ ++..||..+.+-.....+...
T Consensus 380 ~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~---- 453 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG---- 453 (557)
T ss_pred EECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc----
Confidence 333333222222222233 678888888653 366777766432111111111
Q ss_pred CCCCCCeEEEEcCCCcEEEEE-eC------CeEEEEEcCC-ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC--eE
Q 001318 937 PTAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--TV 1006 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg~~la~~-~d------~~v~vwd~~~-~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg--~v 1006 (1101)
....-+..-+|+..++| .+ ..+..||..+ .+-...-...........+.+ +|+..++|+.|+ .+
T Consensus 454 ----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 454 ----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQ 527 (557)
T ss_pred ----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeeh
Confidence 11111223345555554 22 2467899987 444332222121222222333 788889999888 78
Q ss_pred EEEEcCCceee
Q 001318 1007 CVFSAANLKLR 1017 (1101)
Q Consensus 1007 ~vwd~~~~~~~ 1017 (1101)
-.||..+.+-.
T Consensus 528 e~yd~~~~~W~ 538 (557)
T PHA02713 528 DTFNVYTYEWN 538 (557)
T ss_pred hhcCccccccc
Confidence 88888877654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.84 E-value=4.4 Score=45.81 Aligned_cols=156 Identities=13% Similarity=0.046 Sum_probs=83.8
Q ss_pred CCeeEEEEcCCCCeEEEEEec--CCCcEEEEeCCCCceEEEecCcccCeEEEeeeecC--CccEEEEEecCCcEEEEecC
Q 001318 453 GGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE--NIQFIFSTALDGKIKAWLYD 528 (1101)
Q Consensus 453 ~~V~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~~l~s~~~dg~i~~wd~~ 528 (1101)
.+|..++|. ||++ +++|.- ..|.+++=| .+.+..| ..|..++|.+-. +...+++.-..+.|.+|-+.
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 478999997 7886 555542 233333222 2233333 458888887642 22357777778999999875
Q ss_pred CCCcee--eecCCCCce-eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCC
Q 001318 529 NLGSRV--DYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADG 603 (1101)
Q Consensus 529 ~~~~~~--~~~~~~~~v-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~ 603 (1101)
...... -+......+ ..+-.-|+| +.|+|....|++-.....-.++++... +....++..
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQG--------------CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~- 155 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQG--------------CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS- 155 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCc--------------ccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC-
Confidence 321110 000000000 001112222 457777666666444433344554432 333334333
Q ss_pred CCCCcCeEEEccCCCEEEEEeCC-CcEEEEEe
Q 001318 604 GLPASPRIRFNKDGCLLAVSTND-NGIKILAT 634 (1101)
Q Consensus 604 ~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw~~ 634 (1101)
+.|.|.+|.+||+.|+++-.. =.-++||-
T Consensus 156 --G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 156 --GLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred --ceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 359999999999988877533 23467763
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.80 E-value=4.3 Score=45.39 Aligned_cols=280 Identities=11% Similarity=0.058 Sum_probs=151.3
Q ss_pred CceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec-----CCCEEEEEe
Q 001318 750 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-----NDSYVMSAS 824 (1101)
Q Consensus 750 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~-----dg~~la~~s 824 (1101)
...+++|+..|.++||+.....+.+....+.. .-..+|..++.-. +...||+-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---------------------~l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---------------------QLKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE---------------------ecCCcEEEEEeccccCCCCcceEEEec
Confidence 35689999999999998754443333222111 1345555555432 334666666
Q ss_pred CCeEEEEECCC--Cc-------eeeEecCCC--CCeEEEEEecCC----CcEEEEEeccCeEEEEEeecceEeeeecCcc
Q 001318 825 GGKISLFNMMT--FK-------TMATFMPPP--PAATFLAFHPQD----NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 889 (1101)
Q Consensus 825 dg~i~vwd~~~--~~-------~~~~~~~~~--~~i~~l~~sp~d----~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~ 889 (1101)
-.++.||.+.. +. .+..+..|. .....+++-|-+ ..+|++-+-||.+.+|+-+.......+.+.
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~- 174 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF- 174 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-
Confidence 77888887731 11 111122222 122233333322 368999999999999997765544444431
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccc-------------------eeeecCCCCCCCCCCCeEEEEcCC
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN-------------------RFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~-------------------~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
---..++|.+.-..+++++.+..+.-|....-..... .-....-|.. .-.|..+.++..
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~--~l~i~v~~~~~~ 252 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQ--ALDIQVVRFSSS 252 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCce--eEEEEEEEcCCC
Confidence 1123467888888899999988888887532100000 0000000110 012233344444
Q ss_pred CcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEE-E----cCCCC---EEEEEEcCCeEEEEEcCCceeeeecCC
Q 001318 951 QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT-F----SCDSQ---LVYACFLDATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 951 g~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~-~----spdg~---~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1022 (1101)
-..+++-.+..+.+.+.. |........+. ...|++ | ..++. .++.++.++++.||.=.+...-+++.
T Consensus 253 ~~~IvvLger~Lf~l~~~-G~l~~~krLd~---~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~- 327 (418)
T PF14727_consen 253 ESDIVVLGERSLFCLKDN-GSLRFQKRLDY---NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP- 327 (418)
T ss_pred CceEEEEecceEEEEcCC-CeEEEEEecCC---ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC-
Confidence 445555556666666664 44444433322 222222 1 12222 47888999999999855444443332
Q ss_pred CcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1023 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1023 ~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+. ...+.++.-++-...|++-+.+|.+.+-=+-+..
T Consensus 328 -----~~-----PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 328 -----HV-----PVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred -----CC-----CEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 11 1122344333345689999999999998886655
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.89 Score=46.55 Aligned_cols=170 Identities=7% Similarity=0.047 Sum_probs=113.1
Q ss_pred ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEE
Q 001318 885 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 963 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~ 963 (1101)
+.+-...|.++.|+|+.+.|++......-.||=...|+.....++.... ....+.+..+|.++++- .++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 4455556999999999999999888887777766677765555555443 33678888899888884 778888
Q ss_pred EEEcCCceeeeec-----cC--CCC-CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCC---
Q 001318 964 IFETTKLECVKQW-----VP--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS--- 1032 (1101)
Q Consensus 964 vwd~~~~~~~~~~-----~~--~~h-~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--- 1032 (1101)
++.+.....+... .. ..+ ....-.++|+|.++.|+.+-+-.-+.||.+..+.--.... ....+..
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~ 229 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD 229 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence 8877665322211 11 122 5567889999999999988887778887766332111111 1111100
Q ss_pred ---CCccceEEEEeCCCCCEEEEEecCCcEEEEeccCC
Q 001318 1033 ---SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1033 ---~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
..+. ++.|.+..+.++|-+.+++.+...+....
T Consensus 230 ~f~~DvS--gl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 230 LFVLDVS--GLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eEeeccc--cceecCCCCcEEEEecCCceEEEEecCCC
Confidence 0133 68888877788888888888777776544
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.55 Score=55.44 Aligned_cols=195 Identities=9% Similarity=0.057 Sum_probs=106.0
Q ss_pred eEEEEecCCCEEEEEe-C------CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC-----eEEEEEe
Q 001318 809 PCFALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNV 876 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~ 876 (1101)
.++++. ++...++|+ + .++..||..+.+-.. +..-...-.......-+|.+.|+|+.|| +|..||.
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecC
Confidence 344443 446666666 6 247888887766333 2111111111111111789999999997 4667777
Q ss_pred ecce--EeeeecCcccCeeEEEEcCCCCEEEEEeCCC------ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEc
Q 001318 877 RVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 948 (1101)
Q Consensus 877 ~~~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 948 (1101)
.+.+ .+..+.........+.+ +|+..+.||.|+ ++..||..++.-.....+...... ..+ -.
T Consensus 404 ~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-------~g~-a~ 473 (571)
T KOG4441|consen 404 VTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-------FGV-AV 473 (571)
T ss_pred CCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-------ceE-EE
Confidence 6533 33333222222222333 688888888664 467888877654333333333322 122 23
Q ss_pred CCCcEEEE-EeCC-----eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe-----EEEEEcCCceee
Q 001318 949 QDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKLR 1017 (1101)
Q Consensus 949 ~dg~~la~-~~d~-----~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~-----v~vwd~~~~~~~ 1017 (1101)
-++...++ |.|+ +|..||..+.+....-........+....+ +++..++|+.||. |..||..+.+..
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCcee
Confidence 34555555 4444 478899988776554322121222222232 6777788887764 777877776654
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.033 Score=39.93 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=28.6
Q ss_pred CCCeEEEEEecCCCeEEEEEcCCeEEEEEcc
Q 001318 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH 437 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 437 (1101)
...|.+++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.63 Score=45.56 Aligned_cols=141 Identities=9% Similarity=0.057 Sum_probs=84.6
Q ss_pred CCeEEEEEecCCCcEEEEEecc---------CeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE-EEeCCCceEEE
Q 001318 847 PAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVW 916 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg~~d---------g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~-s~s~D~~v~iw 916 (1101)
...+.-..+| +|++.+-...| |.++.|-.. ..+..+...-+--++++|+.|.+.+. +-+.+-+|.-|
T Consensus 109 nR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCC-CCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 3455666788 88885422222 344444321 11122222223345788987776554 45567778778
Q ss_pred e--CCCcccccceeeecCCCCCC-CCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC
Q 001318 917 S--SDGWEKQKNRFLQIPTGRTP-TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSC 992 (1101)
Q Consensus 917 d--~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp 992 (1101)
| ..+|.......+--....++ .......+++..+|.+.++. ..++|...|..+|+.+.++... ...|+|+||--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecC
Confidence 8 66665544333222221111 01123456677788877775 6789999999999999988754 78999999964
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=8.6 Score=46.88 Aligned_cols=246 Identities=9% Similarity=0.044 Sum_probs=116.4
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
-.+..+.++|||++|+.+...+--.-++ +.+.++.+|..+...+.. .-..++|++|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~~-----~~~~~~w~~D~~ 184 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLDN-----VEPSFVWANDSW 184 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCccccC-----cceEEEEeeCCC
Confidence 4567788999999877665432211111 123344555533322221 114599999998
Q ss_pred EEEEEe-C------CeEEEEECCCC--ceeeEecCCCCCeEEEEEecCCCcEEEEEec---cCeEEEEEee--cceEeee
Q 001318 819 YVMSAS-G------GKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR--VDEVKSK 884 (1101)
Q Consensus 819 ~la~~s-d------g~i~vwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~--~~~~~~~ 884 (1101)
.|+... + ..|+.+++.++ +....+...........+.+.++++++..+. ++.+.+|+.. +++....
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 777664 2 35888899887 3334444333333322333336776665543 3578888842 3332222
Q ss_pred ecCcccCeeEEEEcCCCCEEEEEeCC-CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE--EeCCe
Q 001318 885 LKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQ 961 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~d~~ 961 (1101)
+..-.+....+. +..+.+++....+ ...+|..+.-........+..... ...+..+.+. +..|+. ..++.
T Consensus 265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~i~~~~~~--~~~l~~~~~~~g~ 337 (686)
T PRK10115 265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRE----NIMLEGFTLF--TDWLVVEERQRGL 337 (686)
T ss_pred EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCC----CCEEEEEEEE--CCEEEEEEEeCCE
Confidence 221112222222 2233333333222 233444332211111112211111 1256677776 334444 35554
Q ss_pred --EEEEEcCCceeeeeccCCCCCCCeeEEEEc--CCCC-EEEEEE---cCCeEEEEEcCCce
Q 001318 962 --LAIFETTKLECVKQWVPRESSAPITHATFS--CDSQ-LVYACF---LDATVCVFSAANLK 1015 (1101)
Q Consensus 962 --v~vwd~~~~~~~~~~~~~~h~~~i~~l~~s--pdg~-~l~s~s---~dg~v~vwd~~~~~ 1015 (1101)
+.+++..++. +..+.... ...+..+.++ +++. ++++.+ .-+.+..||..+++
T Consensus 338 ~~l~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 338 TSLRQINRKTRE-VIGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEcCCCCc-eEEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 5555654333 23322111 1223334444 4444 444444 34568899988875
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.46 E-value=3.6 Score=49.64 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=59.2
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEECCC-CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 804 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
-...|..+.++++|++++..+...|.|..+.. +..-..+++....|.|=.+.- +.+++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~------------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT------------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence 34578999999999999999877777766642 111122333333333333322 222211
Q ss_pred eeecCcccCeeEEEEcCC---CCEEEEEeCCCceEEEeCCC
Q 001318 883 SKLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~d---g~~l~s~s~D~~v~iwd~~~ 920 (1101)
..+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 123456778888876 47888888899999999865
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.39 E-value=5.5 Score=43.82 Aligned_cols=131 Identities=18% Similarity=0.067 Sum_probs=61.7
Q ss_pred CeEEEEECCCCceeeEecCCCC--CeEEEEEecC-CCcEEEEEe-ccCeEEEEEe-ecce----EeeeecC---------
Q 001318 826 GKISLFNMMTFKTMATFMPPPP--AATFLAFHPQ-DNNIIAIGM-DDSSIQIYNV-RVDE----VKSKLKG--------- 887 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~-d~~~lasg~-~dg~v~vwd~-~~~~----~~~~l~~--------- 887 (1101)
.++.+||+.+.+.++++.-... -...+.|..+ +..+=.+|+ -..+|..|-- ..++ .+..+..
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp 301 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP 301 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence 4699999999999999864433 2456666652 222222222 3344444433 3322 1111111
Q ss_pred --------cccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcccccceeeecCCCCC------------CCCCCCeEEE
Q 001318 888 --------HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRT------------PTAQSDTRVQ 946 (1101)
Q Consensus 888 --------h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~ 946 (1101)
-..-|+.|..|.|.++|.... .+|.|+.||+......+.. -++.-|.. ...+...-+.
T Consensus 302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~-gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq 380 (461)
T PF05694_consen 302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV-GQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ 380 (461)
T ss_dssp GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE-EEEE-BTTTT-B--TTS------S----EE
T ss_pred ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE-eEEEECcEeccCCCccccccccCCCCCeEE
Confidence 134589999999999987665 5899999999875432211 11111100 0112346788
Q ss_pred EcCCCcEEEEE
Q 001318 947 FHQDQIHFLVV 957 (1101)
Q Consensus 947 ~s~dg~~la~~ 957 (1101)
.|-||+.|.++
T Consensus 381 lS~DGkRlYvT 391 (461)
T PF05694_consen 381 LSLDGKRLYVT 391 (461)
T ss_dssp E-TTSSEEEEE
T ss_pred EccCCeEEEEE
Confidence 89999988763
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.061 Score=38.62 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=30.3
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 982 ~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
...|.+++|+|...+||.++.||.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 567999999999999999999999999998 4443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.12 E-value=5.6 Score=42.41 Aligned_cols=231 Identities=11% Similarity=0.027 Sum_probs=111.7
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEec---CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-ceE-
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV- 881 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~- 881 (1101)
...++.|..+ ..+++|..+. .+.....++.-..+. .-.+....+.... ++..+++ +..|.|+ -..+ |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~-~~~G~iy--~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAELA-GDRGAIY--RTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEE-ETT--EE--EESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEE-cCCCcEE--EeCCCCCCe
Confidence 3566777543 4455555553 333333343333321 1223334444444 3444443 4445543 3322 221
Q ss_pred eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCe
Q 001318 882 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 961 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~ 961 (1101)
......-.+.+..+..++||++++++.......-||--.. ......... ...|..+.|+|++...+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--S-----SS-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccCc-----cceehhceecCCCCEEEEeCCcE
Confidence 1122334567889999999999998877766678875431 111222221 14789999999999888888888
Q ss_pred EEEEE-cCCceeeee--ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccce
Q 001318 962 LAIFE-TTKLECVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1038 (1101)
Q Consensus 962 v~vwd-~~~~~~~~~--~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1038 (1101)
|+.=+ ....+.... .......-.+..++|.+++...++|+ .|++. ...+.|+--.+.+.....+.. .+
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n-----~~-- 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSN-----LY-- 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS----------
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCCCc-----eE--
Confidence 88877 222322221 11111234589999999988877665 55443 566777766555433333322 55
Q ss_pred EEEEeCCCCCEEEEEecCCcEEEE
Q 001318 1039 VIAAHPQEPNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 1039 ~i~~~~~d~~~l~s~~~dg~v~vW 1062 (1101)
.+.|.+. +.-.+.+.+|.|.-|
T Consensus 280 ~i~f~~~--~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVNP--DKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEET--TEEEEE-STTEEEEE
T ss_pred EEEEcCC--CceEEECCCcEEEEe
Confidence 7888763 455555678877655
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.02 E-value=3.1 Score=41.03 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=39.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 567 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
++++.+|+..++.-..++|...|..+|+.+..+... ...++|++|-.
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgG 263 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGG 263 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecC
Confidence 445667888888889999999999999999999866 44789999964
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.98 E-value=6.5 Score=43.97 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=78.9
Q ss_pred CCeeEEEEecCCCEEEEEe------------CC-eEEEEECCC--Cce--eeEecCCCCCeEEEEEecCCCcEEEEEecc
Q 001318 806 EAVPCFALSKNDSYVMSAS------------GG-KISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD 868 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s------------dg-~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 868 (1101)
.....|+|.++|+++++-. .+ .|.+++-.+ ++. ...+.........+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4567899999999887742 23 677776543 322 234443344568899998 77 444 4444
Q ss_pred CeEEEEEeec-------ce-EeeeecC----cccCeeEEEEcCCCCEEEEEeCC-------------------CceEEEe
Q 001318 869 SSIQIYNVRV-------DE-VKSKLKG----HSKRITGLAFSHALNVLVSSGAD-------------------SQLCVWS 917 (1101)
Q Consensus 869 g~v~vwd~~~-------~~-~~~~l~~----h~~~V~~l~~s~dg~~l~s~s~D-------------------~~v~iwd 917 (1101)
...++.|... .+ ++..+.. +......++|.|||.+.++.+.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333434421 11 2222322 23347789999999887766521 2344444
Q ss_pred CCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
.++++. .....+. .....++|+++|+++++
T Consensus 171 pdg~~~-----e~~a~G~----rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL-----RVVAHGF----QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE-----EEEecCc----CCCccceECCCCCEEEE
Confidence 444321 1112222 23468999999998877
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.2 Score=42.97 Aligned_cols=178 Identities=10% Similarity=0.031 Sum_probs=98.8
Q ss_pred CCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCe
Q 001318 816 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 892 (1101)
Q Consensus 816 dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V 892 (1101)
+|.++.+.+ ...|++||+.+++.+..-+-....+..=-...-+..+.+-.-.+|.-.+||..+.+++..+.- .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 445555554 356999999998877654322111111111110334444556788999999999888877653 3444
Q ss_pred eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCce
Q 001318 893 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 971 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~ 971 (1101)
+.++- |++-|+.++...+++.-|.++-...... ....+|..- ..+..+.| -||...|- -....|...|.++|+
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v-~VT~~g~pv--~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTV-QVTDDGVPV--SKLNELEW-VDGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceE-EEEECCeec--ccccceee-eccEEEEeeeeecceEEEcCCCCc
Confidence 55554 6666777766667777776653322211 111222110 01111222 14544444 355566666777777
Q ss_pred eeeeccCC----------CCCCCeeEEEEcCCC-CEEEEE
Q 001318 972 CVKQWVPR----------ESSAPITHATFSCDS-QLVYAC 1000 (1101)
Q Consensus 972 ~~~~~~~~----------~h~~~i~~l~~spdg-~~l~s~ 1000 (1101)
.+..+... .|..-...+++.|++ +++++|
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 66554322 245567889999987 556665
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.082 Score=51.60 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=60.1
Q ss_pred EEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE-EEEecCCCeEEEEEcCCeEEEEEccCC
Q 001318 361 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIWSPDGSLFGVAYSRHIVQIYSYHGG 439 (1101)
Q Consensus 361 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~spdg~~las~~~d~~i~iwd~~~~ 439 (1101)
+++|+.+|.|.+|++........ ....-...|.+ +.--.++.+..+++.||.|+.|++.-+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSD------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred EEeecccceEEEecCCccchHHH------------------hhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 88999999999999873211110 01111223333 333346678889999999999999887
Q ss_pred ceeeeeeeecccc-CCeeEEEEcCCCCeEEEEEe--cCCCcEEEEeCC
Q 001318 440 DEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITC--GDDKTIKVWDAT 484 (1101)
Q Consensus 440 ~~~~~~~~l~~h~-~~V~~~~~s~d~~~~~l~s~--~~d~~i~iwd~~ 484 (1101)
+.+. ....|. .++.....+..++ +++.. |.|..++.|++.
T Consensus 135 k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 135 KVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchh
Confidence 7554 233455 3444444444444 34444 556666666654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.4 Score=52.42 Aligned_cols=189 Identities=8% Similarity=0.003 Sum_probs=93.0
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEEEEEecc-----CeEEEEEeecce-
Q 001318 815 KNDSYVMSAS-G------GKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE- 880 (1101)
Q Consensus 815 ~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~- 880 (1101)
.++..++.|+ + ..+..||..+.+.. .+.... ......+..- ++++++.|+.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 4555556554 2 24778888765542 222111 1111112223 67888888865 357778876643
Q ss_pred -EeeeecCcccCeeEEEEcCCCCEEEEEeCC------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 881 -VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 881 -~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
....+....... +++ .-+++..+.||.+ ..+..||..+.+-..... ..... . ...+...+++.
T Consensus 371 ~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~~r-----~-~~~~~~~~~~i 440 (534)
T PHA03098 371 REEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP--LPISH-----Y-GGCAIYHDGKI 440 (534)
T ss_pred eeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC--CCccc-----c-CceEEEECCEE
Confidence 222221111111 112 2367777777742 357888887643221111 11111 1 11223335565
Q ss_pred EEEEe-C--------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceee
Q 001318 954 FLVVH-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1017 (1101)
Q Consensus 954 la~~~-d--------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~ 1017 (1101)
++.|+ + ..+.+||..+++....-...........+.+ ++++++.|+.+ ..|.+||..+.+..
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 55542 1 2388999988765433211111111112222 77777777654 46888988877654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=9.1 Score=42.03 Aligned_cols=156 Identities=10% Similarity=0.043 Sum_probs=88.9
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEE-EEeecceEeee-ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccc
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQI-YNVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 923 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~v-wd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~ 923 (1101)
...+..+.+.+ ++.++++|. .|.++. +|- .++.-.. -..-...++++.+.++++.++.+ ..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999 777776654 555543 221 1121111 12234578999999998876654 567554322333321
Q ss_pred ccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccC-CCCCCCeeEEEEcCCCCEEEEEEc
Q 001318 924 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 1002 (1101)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~s~s~ 1002 (1101)
.......... ....+..+++.+++..++++.+|.+. .....++.-..... ..-....+.+.|..+++.+++| .
T Consensus 248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~ 321 (334)
T PRK13684 248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q 321 (334)
T ss_pred --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence 1111111000 11246789999999988888887665 34444444333221 1113467888888777776655 6
Q ss_pred CCeEEEEEc
Q 001318 1003 DATVCVFSA 1011 (1101)
Q Consensus 1003 dg~v~vwd~ 1011 (1101)
.|.|..|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 888887763
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=2 Score=50.03 Aligned_cols=185 Identities=10% Similarity=-0.029 Sum_probs=92.2
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEeccC--eEEEEEeecc--eEe
Q 001318 815 KNDSYVMSAS-G-----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVD--EVK 882 (1101)
Q Consensus 815 ~dg~~la~~s-d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~--~~~ 882 (1101)
.++..+++|+ + ..+..||..+.+.... +....... +++ .- ++++.++|+.++ .+..||..++ ..+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455556665 3 2477888876543222 22111112 222 23 788888888643 5778887653 333
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCC---ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeC
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 959 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d 959 (1101)
..+.........+. -+|+..+.||.++ .+..||..+.+-.....+.... -...+..-+|+..+.|
T Consensus 347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--
Confidence 33322111122222 3678888888654 4677887764322111111111 0112223456655555
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCcee
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKL 1016 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~ 1016 (1101)
|.+.+||..+++-...-......... +++ .-+|+..+.|+.+ .+|.+||..+++.
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 35778998877654332211111122 222 2267777777754 3466777666543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.6 Score=50.12 Aligned_cols=188 Identities=13% Similarity=0.112 Sum_probs=92.0
Q ss_pred CCcEEEEEeccC------eEEEEEeecceEee--eecCcccCeeEEEEcCCCCEEEEEeCC-----CceEEEeCCCcccc
Q 001318 858 DNNIIAIGMDDS------SIQIYNVRVDEVKS--KLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQ 924 (1101)
Q Consensus 858 d~~~lasg~~dg------~v~vwd~~~~~~~~--~l~~h~~~V~~l~~s~dg~~l~s~s~D-----~~v~iwd~~~~~~~ 924 (1101)
++.+++.|+.++ .+..||..+.+-.. .+.........+. -+++..+.||.+ ..+..||..+..-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456666666432 46777776654321 1211111122222 367788888865 34677887764322
Q ss_pred cceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe---C----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEE
Q 001318 925 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---E----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 997 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---d----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l 997 (1101)
....+... . .-.++ ..-+++..+.|+ + +.+..||..+.+-...-.... ...-.+ +..-+++++
T Consensus 372 ~~~~lp~~--r-----~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~-~~~~~~~iy 441 (534)
T PHA03098 372 EEPPLIFP--R-----YNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGC-AIYHDGKIY 441 (534)
T ss_pred eCCCcCcC--C-----ccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCce-EEEECCEEE
Confidence 11111111 1 11122 223566656542 1 468899988765543221111 111112 223366776
Q ss_pred EEEEcC--------CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC-----CcEEEEec
Q 001318 998 YACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEP 1064 (1101)
Q Consensus 998 ~s~s~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d-----g~v~vW~~ 1064 (1101)
+.|+.+ ..+.+||..+++....-. ...+.. . .. .+.+ ++++++.|+.+ +.+.++|+
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~r~--~--~~--~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSS--LNFPRI--N--AS--LCIF---NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCC--CCcccc--c--ce--EEEE---CCEEEEEcCCcCCcccceeEEEeC
Confidence 777643 238889988876543211 111111 1 11 2222 46777888765 46788887
Q ss_pred cCCC
Q 001318 1065 LESE 1068 (1101)
Q Consensus 1065 ~~~~ 1068 (1101)
.+.+
T Consensus 511 ~~~~ 514 (534)
T PHA03098 511 KTNT 514 (534)
T ss_pred CCCE
Confidence 7654
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.22 E-value=4.6 Score=40.93 Aligned_cols=192 Identities=13% Similarity=0.118 Sum_probs=120.0
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccccee
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF 928 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~ 928 (1101)
-..++-+| ||..-.++...|.|--.|-.+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+.. .
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt---~ 138 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT---R 138 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE---E
Confidence 45566777 78777788777888777888887665544444555667788888766654333 3554555554322 2
Q ss_pred eecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC----------eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEE
Q 001318 929 LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY 998 (1101)
Q Consensus 929 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~----------~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~ 998 (1101)
..+...+.. .......|.+.|.+-.++..| .|++|+.. .....+.|+..|||..-+
T Consensus 139 f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEEE
Confidence 233333322 467889999999998885443 34444442 244678899999999988
Q ss_pred EEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 999 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 999 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+.-.+..|...|-.++. -.++....-+..+ .+ .+--+| -+..-++....+.+..+|.++..
T Consensus 205 aslagnaiaridp~~~~-aev~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 205 ASLAGNAIARIDPFAGH-AEVVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EeccccceEEcccccCC-cceecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCccccc
Confidence 87778888888877773 2233322222222 22 233334 45667777777777777776654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.20 E-value=8.2 Score=40.17 Aligned_cols=228 Identities=15% Similarity=0.230 Sum_probs=128.2
Q ss_pred CeEEEEEecCCCeEEEEEcCCeEEEEEcc------CCceeeeeeeecc-----ccCCeeEEEEcCCCCe----------E
Q 001318 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYH------GGDEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------L 467 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d~~i~iwd~~------~~~~~~~~~~l~~-----h~~~V~~~~~s~d~~~----------~ 467 (1101)
.-+.|+|+|.+.+-++...-+...+||.. ..+.+. .++.. .....+.+.|+..... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~--vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLV--VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceE--EEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 45789999999888888888999999987 122221 12221 2245777888754331 1
Q ss_pred EEEEecCCCcEEEEeCCCCce-----EEEec-CcccCe-EEEeeeecCCccEEEEEe-cCCcEEEEecCCCCcee--eec
Q 001318 468 CVITCGDDKTIKVWDATNGAK-----QYIFE-GHEAPV-YSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRV--DYE 537 (1101)
Q Consensus 468 ~l~s~~~d~~i~iwd~~~~~~-----~~~~~-~h~~~v-~~v~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~--~~~ 537 (1101)
.++.+++||+|.-|...-+.. ...+. ...+.| ..+++.....+.+|+.+. ..++|.++|-.-..... .+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 357788999999998543222 12222 112333 335554444445666554 46889988754322110 011
Q ss_pred CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc--
Q 001318 538 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-- 615 (1101)
Q Consensus 538 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-- 615 (1101)
.+. + -.-|.|-+-..+.+ .--+....-.++++.=+.+-.-|.|-+||. .|+.++++...+....-..++..|
T Consensus 182 DP~--i-PagyAPFnIqnig~--~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 182 DPA--L-PAGYAPFNVQNLGG--TLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCC--C-CCCCCCcceEEECC--eEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhh
Confidence 110 0 00111111100000 000111111233333444555688999997 688888887666555667788765
Q ss_pred ----CCCEEEEEeCCCcEEEEEecCccccccccc
Q 001318 616 ----DGCLLAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 616 ----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
.+.+|+---.||+|..+|..++ +.+-.+.
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~ 288 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSG-AQLGQLL 288 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCC-ceeeeec
Confidence 4778887788999999999888 4444443
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.13 E-value=8.4 Score=40.08 Aligned_cols=208 Identities=9% Similarity=0.064 Sum_probs=120.9
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEECC------CC-ceeeEecC-----CCCCeEEEEEecCCCcE------------E
Q 001318 808 VPCFALSKNDSYVMSAS-GGKISLFNMM------TF-KTMATFMP-----PPPAATFLAFHPQDNNI------------I 862 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s-dg~i~vwd~~------~~-~~~~~~~~-----~~~~i~~l~~sp~d~~~------------l 862 (1101)
...++++|.+.+.++.. .+...+||.. .. .++-++.. .....+.+.|+. ...+ +
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 56799999997777665 5889999986 12 22333432 134577788875 2222 4
Q ss_pred EEEeccCeEEEEEeecceE-----eeeec-CcccCe-eEEEEcCC--CCEEEEE-eCCCceEEEeCCCcccccceeeecC
Q 001318 863 AIGMDDSSIQIYNVRVDEV-----KSKLK-GHSKRI-TGLAFSHA--LNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIP 932 (1101)
Q Consensus 863 asg~~dg~v~vwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--g~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~ 932 (1101)
+.+++||+|.=|.-.-+.. ...+. ...+.| ..+++... +.+|..+ -..++|.|+|-.-..... -..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~---~g~F 180 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL---PGSF 180 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC---CCCc
Confidence 5678999999998432211 11222 112333 45666533 4555544 357889999855422100 0000
Q ss_pred CCCC-CCCCCCeEEEEcCCCcEEEE-E-------------eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC-----
Q 001318 933 TGRT-PTAQSDTRVQFHQDQIHFLV-V-------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSC----- 992 (1101)
Q Consensus 933 ~~~~-~~~~~v~~~~~s~dg~~la~-~-------------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp----- 992 (1101)
.... +.......+.- -.++++++ + ..|.|-+||+. |..++.+...+.-...+.|+..|
T Consensus 181 ~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 181 IDPALPAGYAPFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred cCCCCCCCCCCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCC
Confidence 0100 00000111111 12333332 2 23578999986 66666666556666778888865
Q ss_pred -CCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 993 -DSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 993 -dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.|.+|+---.||+|..||..+|+.+..+.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 57788877789999999999999988777
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=93.97 E-value=8.6 Score=39.61 Aligned_cols=191 Identities=10% Similarity=0.029 Sum_probs=106.7
Q ss_pred CCCeEEEEEecCCCeEEEEEcCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC
Q 001318 407 GVSVNRVIWSPDGSLFGVAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 484 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 484 (1101)
..-...+.|..+|.++-+.+.-| .|+.+|+.+|+..... .+.. .----.++.. +.. +..-.=.++...+||..
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-~l~~-~~FgEGit~~--~d~-l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-PLPP-RYFGEGITIL--GDK-LYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-E-TT-T--EEEEEEE--TTE-EEEEESSSSEEEEEETT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-ECCc-cccceeEEEE--CCE-EEEEEecCCeEEEEccc
Confidence 44567788988999988887766 6999999999865432 2332 1112223333 222 34444567889999999
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
+-+.+.++. ..+.=+.++ .+++.|+.......|.++|..+.+....+.. ..+|.. -..+
T Consensus 119 tl~~~~~~~-y~~EGWGLt----~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V----------~~~g~p------v~~L 177 (264)
T PF05096_consen 119 TLKKIGTFP-YPGEGWGLT----SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV----------TDNGRP------VSNL 177 (264)
T ss_dssp TTEEEEEEE--SSS--EEE----ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-----------EETTEE---------E
T ss_pred cceEEEEEe-cCCcceEEE----cCCCEEEEECCccceEEECCcccceEEEEEE----------EECCEE------CCCc
Confidence 999998886 345667777 2334566666677899998876555443321 111110 0112
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-------------CCCCCcCeEEEccCCCEEEEEe
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-------------GGLPASPRIRFNKDGCLLAVST 624 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~~~~ 624 (1101)
+-+.+- +|...+=.=....|..-|..+|+.+..+... ......+.+++.|....+.+.+
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 222222 2323333335567777888888887776410 1123567899998665544443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=13 Score=40.97 Aligned_cols=156 Identities=10% Similarity=0.022 Sum_probs=88.1
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCceEE-EeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEc
Q 001318 889 SKRITGLAFSHALNVLVSSGADSQLCV-WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 967 (1101)
Q Consensus 889 ~~~V~~l~~s~dg~~l~s~s~D~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~ 967 (1101)
.+.+.++.+.+++.+++++. .|.+.. ++-. ++ ....+... ....+..+.+.++++.++++..|.+.+=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~--tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QT--AWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CC--eEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccC
Confidence 45688999999987766554 454332 2211 11 11111111 114678999999999888887777653234
Q ss_pred CCceeeeeccCC--CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCC
Q 001318 968 TKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1045 (1101)
Q Consensus 968 ~~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~ 1045 (1101)
+.+..-...... .....+.++.|.+++..++++ .+|.|. ...+.|+.-..++.....+.. .+ .+.|..
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~-----~~--~~~~~~- 312 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSN-----FY--KIVFLD- 312 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcc-----eE--EEEEeC-
Confidence 444432221111 113458889999988866654 677665 455666554443311112211 33 577765
Q ss_pred CCCEEEEEecCCcEEEEec
Q 001318 1046 EPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1046 d~~~l~s~~~dg~v~vW~~ 1064 (1101)
+ +.....+..|.|..|+-
T Consensus 313 ~-~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 313 P-EKGFVLGQRGVLLRYVG 330 (334)
T ss_pred C-CceEEECCCceEEEecC
Confidence 2 34556677899887764
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.2 Score=51.98 Aligned_cols=122 Identities=11% Similarity=0.160 Sum_probs=75.5
Q ss_pred ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec-CcccCeeEEEEc--CCCCEEEEEeCCCceEEEeC
Q 001318 842 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFS--HALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 842 ~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~-~h~~~V~~l~~s--~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+......++-+.-|. -++.-++-+....+.|||...+.+...-. ...+.|.++.|. |||+.+++.|..+.|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334455555555 44555544445589999998876432221 346789999986 79999999999999999864
Q ss_pred CCc----ccccceeeecC--CCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEc
Q 001318 919 DGW----EKQKNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 967 (1101)
Q Consensus 919 ~~~----~~~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~ 967 (1101)
... .......+... ..+. +.+|....|.++|.+++ +..+++.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T--~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHT--PHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCC--CCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 211 11111111111 1222 24788999999997554 55677888864
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.3 Score=49.68 Aligned_cols=125 Identities=10% Similarity=0.116 Sum_probs=77.5
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec-CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC
Q 001318 453 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG 531 (1101)
Q Consensus 453 ~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~ 531 (1101)
....-+.-|.-++ ..+..+....+.|||...+.....-. ...+.|..+.|...++++.+++.|..+.|.++--....
T Consensus 30 ~~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 3455555555566 34445556679999999887554322 35788999999999999999999999999998432110
Q ss_pred ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001318 532 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 590 (1101)
Q Consensus 532 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1101)
.... ...-..+..+. +..++.+++....|.++|..++.+| +.+.|++-
T Consensus 108 y~~~-~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 108 YTNK-GPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhcC-CcccceeEEEE--------eecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 0000 00001222222 2334445677777888876555543 46777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.069 Score=61.86 Aligned_cols=145 Identities=14% Similarity=0.222 Sum_probs=85.5
Q ss_pred CeEEEEECC--CCceeeEe-----cCCCCCeEEEEEecC--CCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEE
Q 001318 826 GKISLFNMM--TFKTMATF-----MPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 896 (1101)
Q Consensus 826 g~i~vwd~~--~~~~~~~~-----~~~~~~i~~l~~sp~--d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~ 896 (1101)
|.+.|||+. .|+....+ ......+.-+.|.|. +.-++..+..++.|++....... ...+.+|...++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHH
Confidence 678888875 34333222 222233444444431 45678888889999887765433 255566887777665
Q ss_pred -----------EcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC-------CcE--EEE
Q 001318 897 -----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QIH--FLV 956 (1101)
Q Consensus 897 -----------~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-------g~~--la~ 956 (1101)
.||||+.+|.+..||.++.|.+.-..+...+++..-..|.. ..-.|..|..+ +.+ +++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence 47999999999999999999876443333344333332221 12233334332 222 233
Q ss_pred E--eCCeEEEEEcCCceee
Q 001318 957 V--HETQLAIFETTKLECV 973 (1101)
Q Consensus 957 ~--~d~~v~vwd~~~~~~~ 973 (1101)
+ .+..+++|.....+|.
T Consensus 310 ttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cccCCcceeEeeccchhhh
Confidence 3 3456888887777776
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.012 Score=63.22 Aligned_cols=240 Identities=16% Similarity=0.174 Sum_probs=134.8
Q ss_pred EEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEE
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 821 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la 821 (1101)
....+.+.+..++.++.+..+..||-.. ..... .........++|..++..++
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag----------------------q~~le-----~n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG----------------------QVILE-----LNPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc----------------------ceecc-----cCCchhHhhhhhccccchhh
Confidence 3455666666688888887777776321 11111 11334455677877777766
Q ss_pred EEe--CCeEEEEECCCCceeeEec-CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEc
Q 001318 822 SAS--GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 822 ~~s--dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 898 (1101)
+.. .+.+.+||+.+... .++. +....-.-+.|++ +...++.|...|.+.||+..+.+.+...-.|..+++++++.
T Consensus 91 vlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 654 68899999976432 2222 1122222378999 88999999999999999988776666655599999999999
Q ss_pred CCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEE---EEcCCCcEEEEEeCCeEEEE--Ec--CCce
Q 001318 899 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV---QFHQDQIHFLVVHETQLAIF--ET--TKLE 971 (1101)
Q Consensus 899 ~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~s~dg~~la~~~d~~v~vw--d~--~~~~ 971 (1101)
+.+ +.+.++.|..+.+-...+.... ..+ ..+... ...-..+ .|..-|..+.....+.+.+. .+ ..+.
T Consensus 169 lEd-~vil~dcd~~L~v~~qegeta~---lte-vggepd-nm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~p 242 (615)
T KOG2247|consen 169 LED-YVILCDCDNTLSVTTQEGETAS---LTE-VGGEPD-NMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEP 242 (615)
T ss_pred ccc-eeeecCcHHHHHHhhhccceee---eee-ccCccc-hhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCc
Confidence 875 5666777766554433331110 011 111100 0000011 12223333333222222111 11 1111
Q ss_pred eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeee
Q 001318 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~ 1019 (1101)
.--.+. .-.+-+.|..|--||..+. +.+-|.|.+-...++++...
T Consensus 243 val~fq--~~~gni~cyrwylDg~i~i-gf~ag~iV~iS~h~aeLgae 287 (615)
T KOG2247|consen 243 VALQFQ--EKYGNIHCYRWYLDGYILI-GFDAGYIVSISAHNAELGAE 287 (615)
T ss_pred cceEee--ecCCceeEEEEeccccccc-cccceeEEEEeccchHHHHH
Confidence 111222 2256788888888886544 66667777777888777554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.32 E-value=4.3 Score=47.18 Aligned_cols=148 Identities=14% Similarity=0.223 Sum_probs=89.7
Q ss_pred cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEE
Q 001318 868 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 947 (1101)
Q Consensus 868 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 947 (1101)
--.|+||++ +|.++.++.-..+.+..+.|+.+ ..|+....||++.||++-+........ |.......|..+.|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~sv-----g~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSV-----GFESQMSDIVECRF 135 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhccccc-----ccccccCceeEEEE
Confidence 346889886 47777665444457889999976 466667899999999987643222100 11111124555555
Q ss_pred cCCCcEEEEEeCCeEEEEEcCCc---------------eeeeecc--------------------------CCCC-----
Q 001318 948 HQDQIHFLVVHETQLAIFETTKL---------------ECVKQWV--------------------------PRES----- 981 (1101)
Q Consensus 948 s~dg~~la~~~d~~v~vwd~~~~---------------~~~~~~~--------------------------~~~h----- 981 (1101)
..+|-.+.+.++.-+.+.+.... .+-..+. ...|
T Consensus 136 f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 136 FHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred ecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence 55665444433332222222110 0000000 0011
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCC
Q 001318 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 982 ~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1022 (1101)
...+..+.+||+.++|+-=..+|.|.+-+.+..+.++.++.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 25678889999999999999999999999999988888773
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=93.05 E-value=12 Score=39.89 Aligned_cols=190 Identities=11% Similarity=0.058 Sum_probs=104.1
Q ss_pred eeEEEEecCCCEEEE--Ee-C----------CeEEEEECCCCceeeEecCC------CCCeEEEEEecCCC----cEEEE
Q 001318 808 VPCFALSKNDSYVMS--AS-G----------GKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDN----NIIAI 864 (1101)
Q Consensus 808 i~~~~~s~dg~~la~--~s-d----------g~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~----~~las 864 (1101)
|..+...+++++-+. |. + -+|.+||+.+.+.++++.-. .+....+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666654443 21 1 26899999999988876422 34577788876332 34444
Q ss_pred Ee-ccCeEEEEEeecceEeeeecCcc-------------------cCeeEEEEcC---CCCEEEEEeCCCceEEEeCCCc
Q 001318 865 GM-DDSSIQIYNVRVDEVKSKLKGHS-------------------KRITGLAFSH---ALNVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 865 g~-~dg~v~vwd~~~~~~~~~l~~h~-------------------~~V~~l~~s~---dg~~l~s~s~D~~v~iwd~~~~ 921 (1101)
+. ..+-|.|||+.+++..+.+..+. +.+.+++.+| ||++|.-....+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 43 34689999999887655543321 2366666655 666777665443 355555442
Q ss_pred ccccce---------eeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCce---eeeeccCCCC-CCCeeE
Q 001318 922 EKQKNR---------FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE---CVKQWVPRES-SAPITH 987 (1101)
Q Consensus 922 ~~~~~~---------~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~---~~~~~~~~~h-~~~i~~ 987 (1101)
-..... ..+.. |... .....++++++|..+.+ ...+.|..|+..+.- ....+..... -..+..
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 111100 00111 1000 13467899999998888 588899999998621 1111211122 346788
Q ss_pred EEEcC--CCCEEEEEE
Q 001318 988 ATFSC--DSQLVYACF 1001 (1101)
Q Consensus 988 l~~sp--dg~~l~s~s 1001 (1101)
+.+.+ +|.+.+..+
T Consensus 239 ~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEE-T--TS-EEEEE-
T ss_pred eeeccccCceEEEEEC
Confidence 88888 776655543
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.1 Score=54.20 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=94.9
Q ss_pred CCCeeEEEEecCCCEEEEEe--C-CeEEEEECCCCceee-----EecCC------CCCeEEEEEecCCCcEEEEEeccCe
Q 001318 805 EEAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMA-----TFMPP------PPAATFLAFHPQDNNIIAIGMDDSS 870 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--d-g~i~vwd~~~~~~~~-----~~~~~------~~~i~~l~~sp~d~~~lasg~~dg~ 870 (1101)
...+..+++.+|+...++.. + ..|..||+++...-. -|..| ..-..++.|.|.=--..|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45567778888887766654 3 359999997543221 12222 2335677888743445667778999
Q ss_pred EEEEEeecce-EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 871 IQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 871 v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
|+|..+.-.. ....+ .....+++++|+|-|+.++.|-..|++.-|......+. .+..+... ....|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~--e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVE--ENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcC--CCcceeEEEEec
Confidence 9988765322 12222 24566899999999999999999999998876542211 11111111 125789999999
Q ss_pred CCcEEEE
Q 001318 950 DQIHFLV 956 (1101)
Q Consensus 950 dg~~la~ 956 (1101)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.89 E-value=13 Score=44.93 Aligned_cols=66 Identities=23% Similarity=0.363 Sum_probs=39.6
Q ss_pred CCcEEEEeCCCcceeEeeeeeeeecCC---CCcccccccc-cCCCCCeEEEEEecCCCeEEEEEcCCeEEE
Q 001318 367 VGDIGLWEVGSRERLVLRNFKVWDLGA---CSMPLQAALV-KDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 433 (1101)
Q Consensus 367 dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~h~~~V~~l~~spdg~~las~~~d~~i~i 433 (1101)
|+.+.+||-..... ...+++.-+-.. ....++.... ..-.-.|..|.+||+|++||..|..|.+.+
T Consensus 41 d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 41 DGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred CCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 57888898765443 334444332211 1122332222 223458999999999999999998775444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.75 E-value=4.4 Score=44.59 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=90.5
Q ss_pred EcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecC------CccEEEEEecCCcEEEEecCCCCce
Q 001318 460 FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDNLGSR 533 (1101)
Q Consensus 460 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~------~~~~l~s~~~dg~i~~wd~~~~~~~ 533 (1101)
...++..+++..|+....++--|++.|+.+..+.-|...| +.|.|.. +.+.|+-.+ +..|.-.|.+..+..
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNK 550 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNK 550 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEecccccCCc
Confidence 3334444466778888889999999999999998777653 4443322 223444444 444544455443322
Q ss_pred eeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEE
Q 001318 534 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF 613 (1101)
Q Consensus 534 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 613 (1101)
.........++.-.|+. . ......++++++..|.|++||--.......+++.+. .|..+..
T Consensus 551 i~v~esKdY~tKn~Fss----------------~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idv 611 (776)
T COG5167 551 IKVVESKDYKTKNKFSS----------------G-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDV 611 (776)
T ss_pred eeeeeehhccccccccc----------------c-ccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEe
Confidence 11111111111111111 1 112235799999999999999654444444444443 5788999
Q ss_pred ccCCCEEEEEeCCCcEEEEEec
Q 001318 614 NKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 614 s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
+.+|+++++.+. ..+.+-|+.
T Consensus 612 ta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 612 TANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ecCCcEEEEeec-ceEEEEecc
Confidence 999999887775 567777764
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=92.74 E-value=18 Score=39.63 Aligned_cols=165 Identities=11% Similarity=0.100 Sum_probs=90.4
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCe------EEEEEeec--c-----eEe--eeecCccc--------CeeEEEEcCCCC
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D-----EVK--SKLKGHSK--------RITGLAFSHALN 902 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~------v~vwd~~~--~-----~~~--~~l~~h~~--------~V~~l~~s~dg~ 902 (1101)
-+.+..+.+.+.++++++ .+++|. ++.+++.. + ... ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 456788999874555555 456666 66555543 1 011 11111111 234788888888
Q ss_pred EEEEEeCC------CceEEEeCCCcccccceeeecCC-------CCCCCCCCCeEEEEcCCCcEEEEE------eCC--e
Q 001318 903 VLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT-------GRTPTAQSDTRVQFHQDQIHFLVV------HET--Q 961 (1101)
Q Consensus 903 ~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~la~~------~d~--~ 961 (1101)
++++.=.+ ..|..++.+ |.......+...- ...........++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88877666 667777766 3332221111100 112233578999999999955542 222 1
Q ss_pred -------EE--EEEcCC-ceeeeecc--CCC-----CCCCeeEEEEcCCCCEEEEEE-----cCCeEEEEEcC
Q 001318 962 -------LA--IFETTK-LECVKQWV--PRE-----SSAPITHATFSCDSQLVYACF-----LDATVCVFSAA 1012 (1101)
Q Consensus 962 -------v~--vwd~~~-~~~~~~~~--~~~-----h~~~i~~l~~spdg~~l~s~s-----~dg~v~vwd~~ 1012 (1101)
++ .||..+ +.....+. ... ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 34 455554 32222222 111 356899999999999877432 23455565443
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.66 E-value=31 Score=42.17 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=63.2
Q ss_pred EEEecCCCEEEEEeCCeEEEEECCCCceeeEe--cCCCCCeEEEEEecCCCcEEEEEeccCeEEE--EEeecceEeeeec
Q 001318 811 FALSKNDSYVMSASGGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQI--YNVRVDEVKSKLK 886 (1101)
Q Consensus 811 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~v~v--wd~~~~~~~~~l~ 886 (1101)
.|..|...++.+|-...+++||+...+.++.. +.....|+.+.+. +..+++|+..-.|.. |+-...+++.-..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 45567777888888899999999877666553 2234557777664 456777775555554 4433334332221
Q ss_pred -CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 887 -GHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 887 -~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
.-...|+++.+- |-..+|.+..=|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 122346666665 44567766665666555544
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=21 Score=39.97 Aligned_cols=152 Identities=10% Similarity=0.047 Sum_probs=85.3
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeec--ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccc
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 926 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~--~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~ 926 (1101)
...+..++ ++.++++|..-..++-||-.. .+.+. ......++++.|.+++..++++ .+|.+ +|....++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHN--RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEec--CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456667 777777665443333444221 11111 2234568999999998877755 55654 344444321100
Q ss_pred -eeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeecc-CCCCCCCeeEEEEcCCCCEEEEEEcCC
Q 001318 927 -RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDA 1004 (1101)
Q Consensus 927 -~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~-~~~h~~~i~~l~~spdg~~l~s~s~dg 1004 (1101)
........ .....+..+.|.+++..++++..|.+..-. ..|+.-.... ...-...++.+.|.++++.+++| .+|
T Consensus 316 ~~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G 391 (398)
T PLN00033 316 FDFEEADIK--SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG 391 (398)
T ss_pred cceeecccC--CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence 01111110 011257889999999999999888776654 3333322211 12224578899998887777755 688
Q ss_pred eEEEE
Q 001318 1005 TVCVF 1009 (1101)
Q Consensus 1005 ~v~vw 1009 (1101)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77655
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.48 E-value=4 Score=45.62 Aligned_cols=149 Identities=9% Similarity=0.086 Sum_probs=78.4
Q ss_pred CeeEEEEcCCCCEEEEEe-----------CCC-ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe
Q 001318 891 RITGLAFSHALNVLVSSG-----------ADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 958 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s-----------~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 958 (1101)
...+|+|.++|+++++-. ..+ .|.+++-..+.-..........+. .....+++.++| .+++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l----~~p~Gi~~~~~G-lyV~~- 88 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL----SMVTGLAVAVGG-VYVAT- 88 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC----CCccceeEecCC-EEEeC-
Confidence 356789999988877643 122 576666543221111111111111 245789999999 44443
Q ss_pred CCeEEEE-EcCCc-----e--ee-eeccCCC--CCCCeeEEEEcCCCCEEEEEEcC-------------------CeEEE
Q 001318 959 ETQLAIF-ETTKL-----E--CV-KQWVPRE--SSAPITHATFSCDSQLVYACFLD-------------------ATVCV 1008 (1101)
Q Consensus 959 d~~v~vw-d~~~~-----~--~~-~~~~~~~--h~~~i~~l~~spdg~~l~s~s~d-------------------g~v~v 1008 (1101)
...|..| |.... + .+ ..+.... +......++|.|||.+.++-+.. |.|.-
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 3445444 54321 1 11 2222210 23457889999999877655521 34555
Q ss_pred EEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCC
Q 001318 1009 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1057 (1101)
Q Consensus 1009 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg 1057 (1101)
++.++++.. .+. .| ...+..++|++ +++++++-..++
T Consensus 169 ~~pdg~~~e-~~a------~G----~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 169 YNPDGGKLR-VVA------HG----FQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EecCCCeEE-EEe------cC----cCCCccceECC-CCCEEEEccCCC
Confidence 555554432 111 12 13345799998 678877655443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.47 E-value=15 Score=37.95 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec---ceEeeeecCcccCe
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRI 892 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~h~~~V 892 (1101)
++++..+. +..++++|+.+......+..-.-.=.+-.+.- .|++..++..|.-+.++|+.+ -.+..+.......-
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~ 174 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT 174 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc
Q ss_pred eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCcee
Q 001318 893 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 972 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~ 972 (1101)
..++.| |++-..+..|+-+.|-|+.. ..-..+-++......+..+..+++-.+++....+ +.+-|..+.+.
T Consensus 175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSn------p~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~s~~ss 245 (370)
T COG5276 175 HDVAIS--GNYAYVAWRDGGLTIVDVSN------PHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDVSGPSS 245 (370)
T ss_pred eeEEEe--cCeEEEEEeCCCeEEEEccC------CCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eEEEecCCCCC
Q ss_pred eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 973 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 973 ~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
...+-......++.--.|.=-+++...+..+.-+.+-|+.+
T Consensus 246 p~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 246 PTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred ceEeeccccCCcccccceecccceeeeeccccCceeEeccC
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=8.7 Score=44.74 Aligned_cols=185 Identities=8% Similarity=-0.005 Sum_probs=93.7
Q ss_pred CCcEEEEEeccC-----eEEEEEeecceE--eeeecCcccCeeEEEEcCCCCEEEEEeCC--CceEEEeCCCccccccee
Q 001318 858 DNNIIAIGMDDS-----SIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRF 928 (1101)
Q Consensus 858 d~~~lasg~~dg-----~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~D--~~v~iwd~~~~~~~~~~~ 928 (1101)
++.++++|+.++ .+..||..+++- +..+.........+. -+|...+.||.+ .++..||..+++-.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 567777787543 566788776542 223322111122222 367777888764 357778765532111111
Q ss_pred eecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC---CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC
Q 001318 929 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1004 (1101)
Q Consensus 929 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d---~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg 1004 (1101)
+... .-...+..-+|+..+.| .+ ..+..||..+.+-...-........ .++ ..-+|+..+.| |
T Consensus 349 l~~~--------r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~G---G 415 (480)
T PHA02790 349 LLKP--------RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVG---R 415 (480)
T ss_pred CCCC--------CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEEC---C
Confidence 1111 11112223456666663 32 3577899887765443221111111 122 23467766666 4
Q ss_pred eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001318 1005 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1068 (1101)
Q Consensus 1005 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d-----g~v~vW~~~~~~ 1068 (1101)
.+.+||..+++-... . .++...... +++.. ++++.+.||.+ .++..+|+.+.+
T Consensus 416 ~~e~ydp~~~~W~~~-~---~m~~~r~~~-----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLI-D---DPIYPRDNP-----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEc-C---CCCCCcccc-----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 577899887765432 1 122211111 23333 46788888865 357788887755
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.22 E-value=15 Score=37.49 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=143.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
.......++.++||..-.++. .+.|--.|-.+|+....--+....-..+..-|+++.++. -+.. .|.-.|-++.+..
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wit-d~~~-aI~R~dpkt~evt 137 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWIT-DTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEe-cCcc-eeEEecCcccceE
Confidence 345567788999998888887 677888888888877665555666677788884444443 2211 4444555444322
Q ss_pred e---eecCcccCeeEEEEcCCCCEEEEEeCC---------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 883 S---KLKGHSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 883 ~---~l~~h~~~V~~l~~s~dg~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
. ..+.-........|.++|.+-+|+... +.|++|+... | .....++..||
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------G-----~gpyGi~atpd 199 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-------------G-----GGPYGICATPD 199 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-------------C-----CCCcceEECCC
Confidence 1 122234557788899999888887532 3455555433 2 24578899999
Q ss_pred CcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCC
Q 001318 951 QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1029 (1101)
Q Consensus 951 g~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 1029 (1101)
|...+++ .++.|...|..++.......+.+-...-..+.-+|.|+.-++....+.+.-||-.+.. -..+. +|..
T Consensus 200 Gsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eyp----LPgs 274 (353)
T COG4257 200 GSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYP----LPGS 274 (353)
T ss_pred CcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeee----CCCC
Confidence 9988774 6667777777666332222222213334555667788888887777888888866544 22233 3321
Q ss_pred CCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC-ccccCCCC
Q 001318 1030 VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVPPP 1076 (1101)
Q Consensus 1030 ~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~-~~~~~~~~ 1076 (1101)
...-+ ++.-.. .+..-.+--..|.|.-+|..+.. ..+..++|
T Consensus 275 --~arpy--s~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 275 --KARPY--SMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred --CCCcc--eeeecc-CCcEEeeccccCceeecCcccceEEEecCCCC
Confidence 11122 233322 23344444455667777776655 44444444
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.18 E-value=3.4 Score=40.03 Aligned_cols=183 Identities=10% Similarity=0.096 Sum_probs=99.0
Q ss_pred CCcEEEEEeccC--eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEE-EeCCCceEEEeCCCcccccceeeecCCC
Q 001318 858 DNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIPTG 934 (1101)
Q Consensus 858 d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 934 (1101)
++.++.+.+.-| .|++||+.+++.+..-.-....+..=-...-|.++.. .=.||.-.++|.++-+.... +.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~-----~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGR-----FSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcc-----ccc
Confidence 567777766443 7999999988766543221112211111111222222 22467778888877432211 110
Q ss_pred CCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCC---CCeeEEEEcCCCCEEEEEEcCCeEEEEE
Q 001318 935 RTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITHATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 935 ~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~---~~i~~l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
.=.......|++.|+.+ ....++.-|.++.....+....-.. ..+..+.|- ||...|-.-.+..|...+
T Consensus 130 ------~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 130 ------EGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred ------CCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 11234445566666654 4456666677665444333221112 233444443 777777666777788889
Q ss_pred cCCceeeeecCCCcccCCC----CCCCCccceEEEEeCCCCCEEEEEe
Q 001318 1011 AANLKLRCRINPSAYLPAG----VSSSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
.++|+.+..+..+.-.+.- ...... -.|++.|+.++++++|-
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvl--NGIA~~~~~~r~~iTGK 248 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVL--NGIAHDPQQDRFLITGK 248 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccc--cceeecCcCCeEEEecC
Confidence 9999988877654432211 011112 37999997667777763
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.9 Score=49.20 Aligned_cols=78 Identities=15% Similarity=0.310 Sum_probs=55.3
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 406 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
....++++.-+|.|+.++.+..||+|++|++......+ +.....+-..+.|...| |++...|..+.-|. ++
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~d 83 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-ED 83 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-cc
Confidence 34567888888999999999999999999987644322 22233455567776555 56777788888887 66
Q ss_pred CceEEEe
Q 001318 486 GAKQYIF 492 (1101)
Q Consensus 486 ~~~~~~~ 492 (1101)
|...+.|
T Consensus 84 gvvqqqf 90 (1636)
T KOG3616|consen 84 GVVQQQF 90 (1636)
T ss_pred Ccchhhc
Confidence 6555444
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.32 Score=44.81 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=61.7
Q ss_pred ehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHHH
Q 001318 59 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIML 131 (1101)
Q Consensus 59 ~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 131 (1101)
++|.|+-+.||||+..|...+|..++++--..+.....+++++|+.+....+..+++....++. .+.+=..|+
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~ 108 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL 108 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence 8999999999999999999999999997655555567899999999998887777776665544 234446666
Q ss_pred HHHhh
Q 001318 132 VELKK 136 (1101)
Q Consensus 132 ~~l~~ 136 (1101)
.-|++
T Consensus 109 ~~L~~ 113 (133)
T cd08044 109 RFLES 113 (133)
T ss_pred HHHHH
Confidence 66665
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.29 Score=56.97 Aligned_cols=164 Identities=13% Similarity=0.145 Sum_probs=96.4
Q ss_pred cCCCCcEEEEE----ecCCCeEEEEEecCCcEEEEeCCC--cceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 343 NQGSSPMSMDF----HPVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 343 ~h~~~v~~~~~----spdg~~llatg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
+..+.|-.++| +|.+.. ++ |...|||+.- |+......+++ ...-...+.-+.|.
T Consensus 130 gf~G~v~dl~fah~~~pk~~~-~v-----g~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wc 189 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGRR-LV-----GELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWC 189 (1283)
T ss_pred cCCCCcccccccccCChHHHH-Hh-----hhhheeehHhhccccccceEEee--------------cCcCCCCcceeeec
Confidence 35677777777 344442 22 6788898753 43332222221 22222333444444
Q ss_pred ---cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEE-----------cCCCCeEEEEEecCCCcEEEEe
Q 001318 417 ---PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-----------SHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 417 ---pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~-----------s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
++.-++..+-.+++|++..+.+... . .+.+|...+..++| ||||+ .++.++.||.++.|.
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQ 263 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceee
Confidence 4777888888899999888776433 1 25578888777765 78888 788888888888776
Q ss_pred CC-----CCceEEEecCcccCeEEEeeeecCC---------ccEEEEEec-CCcEEEEecCCCCce
Q 001318 483 AT-----NGAKQYIFEGHEAPVYSVCPHHKEN---------IQFIFSTAL-DGKIKAWLYDNLGSR 533 (1101)
Q Consensus 483 ~~-----~~~~~~~~~~h~~~v~~v~~~~~~~---------~~~l~s~~~-dg~i~~wd~~~~~~~ 533 (1101)
+. ..+|++.++.|++.-. +||....+ -.++++++. ...+++|.....++.
T Consensus 264 iyi~g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 53 2345556666763322 33332221 123444443 456888876554444
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.43 E-value=28 Score=39.03 Aligned_cols=151 Identities=9% Similarity=-0.021 Sum_probs=84.3
Q ss_pred eeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCce
Q 001318 892 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 971 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~ 971 (1101)
...+..++||.+++.+.....++-||--.. ....+.... ...+..+.|.++|..++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~---~W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP---YWQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc---ceEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 445667788877776654433334443220 001111111 13678999999999998887777544 333332
Q ss_pred -----eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 972 -----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 972 -----~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
.........-...++++.|.+|+..+++| .+|.+.... +.|+.-.+.......+ ...+ .+.|.+ +
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~-----~~ly--~v~f~~-~ 381 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIA-----ANLY--SVKFFD-D 381 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCC-----ccee--EEEEcC-C
Confidence 11222111112458999999888876655 678776654 5555544333111122 2255 788876 3
Q ss_pred CCEEEEEecCCcEEEE
Q 001318 1047 PNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW 1062 (1101)
+.....+.+|.|.-|
T Consensus 382 -~~g~~~G~~G~il~~ 396 (398)
T PLN00033 382 -KKGFVLGNDGVLLRY 396 (398)
T ss_pred -CceEEEeCCcEEEEe
Confidence 445555678887655
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.79 Score=48.83 Aligned_cols=88 Identities=10% Similarity=0.206 Sum_probs=69.4
Q ss_pred HhHhcCcccc----------HHHHHHHhhcCChHHHHHHhccc-ccccCccccceehhhhHHhHHHHHhcCCCHH--HHH
Q 001318 15 LEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGF-TKVDDNRYSMKIFFEIRKQKYLEALDKHDRA--KAV 81 (1101)
Q Consensus 15 l~~esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~--~Al 81 (1101)
|-+|+|...+ +.+.-+++..||-.-|++.+..- ..+.+.. . .+.|.+.++.|++++..|... +|+
T Consensus 139 l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~-s-~LE~~Lh~l~fl~l~~~g~~~~~eAl 216 (394)
T KOG2817|consen 139 LIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS-S-SLEFKLHSLHFLSLIRGGKSDQREAL 216 (394)
T ss_pred HHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc-c-cHHHHHHHHHHHHHHhcCCcCcHHHH
Confidence 8899998862 77888999999999999998764 2333322 2 278999999999999998888 999
Q ss_pred HHHHhccccccccCHHHHHHhhh
Q 001318 82 EILVKDLKVFSTFNEELFKEITQ 104 (1101)
Q Consensus 82 ~~L~~~l~~l~~~~~~~~~~L~~ 104 (1101)
+..|+.++|+......+.+.|-.
T Consensus 217 ~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 217 RYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHhcCccccchHHHHHHHHH
Confidence 99999999987655555555543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.38 E-value=19 Score=42.20 Aligned_cols=172 Identities=7% Similarity=0.125 Sum_probs=89.7
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeE----ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
.+..+.|+.+..++++.-+|++++|++.. ..+.. +......|..+.|.. +| +|.-..+|.+.+-+-.....+
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~-~G--Vavlt~~g~v~~i~~~~~~~~ 160 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFH-NG--VAVLTVSGQVILINGVEEPKL 160 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEec-Cc--eEEEecCCcEEEEcCCCcchh
Confidence 78889999999888888899999999863 22222 122233455555555 45 333344565555432222122
Q ss_pred eeecC---cccCeeEEEEcCCC---CEEEEEe-CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 883 SKLKG---HSKRITGLAFSHAL---NVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 883 ~~l~~---h~~~V~~l~~s~dg---~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
.++.. ..-+-+|-...+++ ..|+-.. ..+ ..+.-++... ......... ...+..+..||+.++|+
T Consensus 161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q~~~~~~~----~~~~~ki~VS~n~~~la 232 (829)
T KOG2280|consen 161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQLHALSWP----NSSVVKISVSPNRRFLA 232 (829)
T ss_pred hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---ccccccCCC----CceEEEEEEcCCcceEE
Confidence 22221 11111121111221 1111111 011 1112222111 111111111 14678899999999999
Q ss_pred E-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEc
Q 001318 956 V-VHETQLAIFETTKLECVKQWVPRESSAPITHATFS 991 (1101)
Q Consensus 956 ~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~s 991 (1101)
- ...|.+.+-+.+..++...+....|. +...++|.
T Consensus 233 Lyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wc 268 (829)
T KOG2280|consen 233 LYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWC 268 (829)
T ss_pred EEecCCcEEEEecchhhhhhccCCCCCC-chHhceee
Confidence 8 78899999998888877777654433 22255554
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=91.23 E-value=26 Score=39.30 Aligned_cols=199 Identities=11% Similarity=-0.044 Sum_probs=104.8
Q ss_pred EecCCCEEEEEeCCeEEEEECCCCceeeEecCCC--CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcc-
Q 001318 813 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS- 889 (1101)
Q Consensus 813 ~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~- 889 (1101)
...|++.++...+|.|.-+|..++..+....... ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+-......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4446666555558888888888887654433221 2333333343 565 6678889999999988888877665544
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeec-CCCCCCCCCCCeEEEEcCCCcEEEEEe--CCeEEEEE
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI-PTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFE 966 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~la~~~--d~~v~vwd 966 (1101)
-.+..-..-.++. +...+.|+.+...+..+++..-...... ... .+..-....++..++... ++.+.-.|
T Consensus 143 ~~~~~~~v~~~~~-v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~------~~~~~~~~~~~~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 143 PYYASPPVVGDGT-VYVGTDDGHLYALNADTGTLKWTYETPAPLSL------SIYGSPAIASGTVYVGSDGYDGILYALN 215 (370)
T ss_pred eEEecCcEEcCcE-EEEecCCCeEEEEEccCCcEEEEEecCCcccc------ccccCceeecceEEEecCCCcceEEEEE
Confidence 1122222222332 2333356667666666655422211111 000 111111133444444433 55677778
Q ss_pred cCCceeeeeccC---CCCCCCe-e-EE---EEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 967 TTKLECVKQWVP---RESSAPI-T-HA---TFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 967 ~~~~~~~~~~~~---~~h~~~i-~-~l---~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.+|...-.... .+..... + .+ ..--++. +..++.++.+...|..+|+.+-++.
T Consensus 216 ~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 216 AEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGG-VYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred ccCCcEeeeeeeecccCcccccccccccCceEEECCc-EEEEecCCeEEEEEcCCCceEEEEe
Confidence 878777655321 0111000 0 00 0011222 3566778888889999999887776
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=91.21 E-value=9.9 Score=37.63 Aligned_cols=112 Identities=16% Similarity=0.235 Sum_probs=67.4
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECC--CCceeeEecCCCCCeEEEEEecCCCcEEEEEecc---C---eEEEE---E
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S---SIQIY---N 875 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g---~v~vw---d 875 (1101)
....++.+..+.++++++.++|.+|++. ..+...+|..- +.|..++++. .|.+|++--.+ . .+|+| .
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 4455555554455555668889999987 44556667643 7899999999 89999986432 2 56665 2
Q ss_pred ee--cceEe-eeecCc---------------------ccCeeEEEEcCC-CCEEEEEeCCCceEEEeCCCcc
Q 001318 876 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWE 922 (1101)
Q Consensus 876 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d-g~~l~s~s~D~~v~iwd~~~~~ 922 (1101)
.. ..+.+ ..+-|| +.++.+++-.|- |++|+ |+ ++++.+|.+....
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQT 166 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEE
Confidence 21 11111 122232 224556666664 44444 44 5679999887643
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.69 Score=32.14 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=26.7
Q ss_pred CCcEEEEEecCCC--eEEEEEecCCcEEEEeCCC
Q 001318 346 SSPMSMDFHPVQQ--TLLLVGTNVGDIGLWEVGS 377 (1101)
Q Consensus 346 ~~v~~~~~spdg~--~llatg~~dg~i~iwd~~~ 377 (1101)
+.|.++.|||... .||+....-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998544 5788888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=90.17 E-value=58 Score=40.54 Aligned_cols=174 Identities=10% Similarity=0.132 Sum_probs=105.6
Q ss_pred CCCCeeEEEEe---c----CCCEEEEEeCCeEEEEECCCC---------------ceeeEecC---CCCCeEEEEEecCC
Q 001318 804 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTF---------------KTMATFMP---PPPAATFLAFHPQD 858 (1101)
Q Consensus 804 ~~~~i~~~~~s---~----dg~~la~~sdg~i~vwd~~~~---------------~~~~~~~~---~~~~i~~l~~sp~d 858 (1101)
...+|..|+|+ . ..++|++-....+.|+...-. ..+.++.. .......++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46788888888 2 234777777778888872211 12223321 12356778888877
Q ss_pred CcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCC
Q 001318 859 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 938 (1101)
Q Consensus 859 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
.+.||+.+..|+..||++..... .+ .....+.- ...|.| +.|...-
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~-----~~-~~~~~~~~----------~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPK-----RK-SSNLRLSR----------NISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEeccccc-----cC-Ccceeecc----------CCCccc-cCCCccc-----------------
Confidence 78888888889999998821110 01 11111111 112222 2222210
Q ss_pred CCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCC--CCEEEEEEcCCeEEEEEcCCc
Q 001318 939 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 939 ~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spd--g~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
..-..+.|.++-..|+++....+.++|+.+......+........|..+.-+|+ +..++.. ...|...++.+.
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 133578888898899999999999999998876442322234678999998887 3333332 367888888763
|
These proteins are found in fungi. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=90.08 E-value=1 Score=30.88 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=24.7
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecC--CcEEEE
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW 373 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~d--g~i~iw 373 (1101)
+........+.+|||||++|+.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344566788999999999988888887 776666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.04 E-value=5 Score=48.86 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=65.0
Q ss_pred CeeEEEEecCCC--EEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 807 AVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 807 ~i~~~~~s~dg~--~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
...++.|.|.-- .++.-.|+.|++.-+.......+--......++++|+| .|+.+++|...|++.-|... ++....
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ 234 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSE 234 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeec
Confidence 345566666432 23333488888887753222222112355689999999 89999999999999988743 333333
Q ss_pred ecC----cccCeeEEEEcCCCCEEEEEe
Q 001318 885 LKG----HSKRITGLAFSHALNVLVSSG 908 (1101)
Q Consensus 885 l~~----h~~~V~~l~~s~dg~~l~s~s 908 (1101)
+.+ ....|.+|+|-....+||+-+
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEec
Confidence 322 246899999987777777543
|
|
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.4 Score=44.77 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=54.8
Q ss_pred ehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHHH
Q 001318 59 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIML 131 (1101)
Q Consensus 59 ~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 131 (1101)
++|.|+-+.||+|+..|..++|..+|.+--.-+.....+++++|..+....+..+.+....++. .+.+-..|+
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~ 119 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLLL 119 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHHH
Confidence 8999999999999999999999999998655555557788999988777665554444444433 244445666
Q ss_pred HHHhh
Q 001318 132 VELKK 136 (1101)
Q Consensus 132 ~~l~~ 136 (1101)
.-|++
T Consensus 120 ~fL~~ 124 (142)
T PF04494_consen 120 QFLQE 124 (142)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65555
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.3 Score=30.85 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCeEEEEEecC-C--CeEEEEEcCCeEEEEEccCC
Q 001318 408 VSVNRVIWSPD-G--SLFGVAYSRHIVQIYSYHGG 439 (1101)
Q Consensus 408 ~~V~~l~~spd-g--~~las~~~d~~i~iwd~~~~ 439 (1101)
++|.++.|||+ + ++|+.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 47899999984 4 58888888899999999863
|
It contains a characteristic DLL sequence motif. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=89.76 E-value=17 Score=40.84 Aligned_cols=205 Identities=13% Similarity=0.078 Sum_probs=107.1
Q ss_pred CCcEEEEEeccCeEEEEEeecceEeeeecCc--ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC
Q 001318 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR 935 (1101)
Q Consensus 858 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h--~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 935 (1101)
+++ +.++..+|.|.-.|..+++.+-....- ...+..-.+..+|+ |+.++.++.+...|..+|+..-...... .
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~ 142 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S 142 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC---C
Confidence 443 444577887777777777654322111 12222323333676 6667788888888887766543332222 0
Q ss_pred CCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCC-CCCCeeEEEEcCCCCEEEEEEc--CCeEEEEEcC
Q 001318 936 TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFL--DATVCVFSAA 1012 (1101)
Q Consensus 936 ~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~s~s~--dg~v~vwd~~ 1012 (1101)
..+..-.+-.++..++.+.++.+...|..+++.+-...... -...+..--...++. ++.+.. ++.+.-.|..
T Consensus 143 ----~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 143 ----PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGYDGILYALNAE 217 (370)
T ss_pred ----eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCCcceEEEEEcc
Confidence 01222233344544444456777777777777654432211 011111111122343 344444 5677778888
Q ss_pred CceeeeecCCCcccCCCCC--CCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccccCCCC
Q 001318 1013 NLKLRCRINPSAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1076 (1101)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~--~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~~~~~~ 1076 (1101)
+|...-..+.......... ...+..-.+ .. + ..+..++.+|.+.-.+..+++..|..+.+
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v-~v--~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPV-YV--D-GGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceE-EE--C-CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 8888766432221211100 000110011 11 1 23577788899999999999999999886
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.45 E-value=16 Score=43.52 Aligned_cols=116 Identities=8% Similarity=0.058 Sum_probs=76.2
Q ss_pred CeEEEEEec--CCCeEEEEEcCCeEEEEEccC-------C----------ceeeeeeeeccccCCeeEEEEc--CCCCeE
Q 001318 409 SVNRVIWSP--DGSLFGVAYSRHIVQIYSYHG-------G----------DEVRQHLEIDAHVGGVNDIAFS--HPNKQL 467 (1101)
Q Consensus 409 ~V~~l~~sp--dg~~las~~~d~~i~iwd~~~-------~----------~~~~~~~~l~~h~~~V~~~~~s--~d~~~~ 467 (1101)
.|..|.... +...|+.|.+||.|.+|.+++ . ..+++.+.+. -...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 566666655 677899999999999997632 0 0112222233 33478899998 5555
Q ss_pred EEEEecCCCcEEEEeCCCC--ceEE-EecCcccCeEEEeeeecC---Ccc-EEEEEecCCcEEEEec
Q 001318 468 CVITCGDDKTIKVWDATNG--AKQY-IFEGHEAPVYSVCPHHKE---NIQ-FIFSTALDGKIKAWLY 527 (1101)
Q Consensus 468 ~l~s~~~d~~i~iwd~~~~--~~~~-~~~~h~~~v~~v~~~~~~---~~~-~l~s~~~dg~i~~wd~ 527 (1101)
++|.++....|.||-.... +... .-..|...|-+|+|.... +|. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888888765432 1111 111255678888887654 233 7888889999998877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.27 E-value=9.5 Score=45.28 Aligned_cols=132 Identities=6% Similarity=0.057 Sum_probs=73.7
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCce-eeecCCCCc-eeEEEEccCCceEEeccccCceeEEEEc--CCCC
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRW-CTTMAYSADGTRTYQGFRKRSLGVVQFD--TTKN 574 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~-v~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~ 574 (1101)
|+.|....-.+...|+.|..||.|.+|..++--.. ......... ...+...|+ +.-.-....+.++++ ...+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~----f~~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF----FHLRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC----eEeecCCceeEEEEEecCcce
Confidence 34343333355578999999999999976431100 000000000 000111121 112223366777777 6777
Q ss_pred EEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCCcCeEEEccCC---C---EEEEEeCCCcEEEEEe
Q 001318 575 RFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDG---C---LLAVSTNDNGIKILAT 634 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~---~---~l~~~~~dg~i~iw~~ 634 (1101)
++|+++....|.||-..... .......+.+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 78888888888887654421 11111122234468899998743 2 7888899999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.05 E-value=25 Score=38.52 Aligned_cols=173 Identities=17% Similarity=0.212 Sum_probs=94.6
Q ss_pred cccceEEEEEcCCCceEEeeecCce------EEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeE
Q 001318 737 RATKISRLIFTNSGNAILALASNAI------HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 810 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~ 810 (1101)
.-+.++.+.+.+++..+++.+.+|. +..+++..... ..........+.+-+.. |.... . ......+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~----~--~~~D~Eg 89 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP----K--NGLDPEG 89 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC----c--CCCChhH
Confidence 3467789999977667888888777 55555433111 01111111111111111 21111 0 1225677
Q ss_pred EEEecCCCEEEEEe-C------CeEEEEECCCCceeeEec---------------CCCCCeEEEEEecCCCcEEEEEec-
Q 001318 811 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFM---------------PPPPAATFLAFHPQDNNIIAIGMD- 867 (1101)
Q Consensus 811 ~~~s~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~---------------~~~~~i~~l~~sp~d~~~lasg~~- 867 (1101)
+++.++|.++++.- + ..|+.++.. |+....+. ......-+|+++| +|+.|.++.+
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES 167 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence 88888888877765 6 678888876 66554431 1234578999999 8885555542
Q ss_pred ----cC--e-------EEEE--Eeec-ceE----eeeecC-----cccCeeEEEEcCCCCEEEEE-----eCCCceEEEe
Q 001318 868 ----DS--S-------IQIY--NVRV-DEV----KSKLKG-----HSKRITGLAFSHALNVLVSS-----GADSQLCVWS 917 (1101)
Q Consensus 868 ----dg--~-------v~vw--d~~~-~~~----~~~l~~-----h~~~V~~l~~s~dg~~l~s~-----s~D~~v~iwd 917 (1101)
|+ . ++|+ |..+ ++. ...+.. ....|..+.+-+++++|+-= +....++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 22 1 4555 4443 222 223332 34568889999998877632 1234455555
Q ss_pred CC
Q 001318 918 SD 919 (1101)
Q Consensus 918 ~~ 919 (1101)
+.
T Consensus 248 v~ 249 (326)
T PF13449_consen 248 VD 249 (326)
T ss_pred EE
Confidence 44
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.89 E-value=13 Score=40.58 Aligned_cols=143 Identities=6% Similarity=0.073 Sum_probs=87.2
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeecc--eEeeee-cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 925 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~ 925 (1101)
.+.+-|.. .++.| .+...|.+.=|-+... ...-.+ ....++|.++.||+|.+.||.--.|++|.+.+....+...
T Consensus 25 sngvFfDD-aNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 45566654 33333 3445566666665432 112222 2346799999999999999999999999999985433211
Q ss_pred ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCce-eeeeccCCCCCCCeeEEEEcCCCCEEEEE
Q 001318 926 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYAC 1000 (1101)
Q Consensus 926 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~s~ 1000 (1101)
.. ...+......|...+|+.. .-+|...+..+.+|-+...+ .++.. ..|...|.-..|.++-+.++.+
T Consensus 103 ~~----~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlV--ks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 103 EY----TQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLV--KSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred HH----HHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhh--hhcccCccEEEEccccceEeee
Confidence 11 1111111235788899877 55666667777777654332 22222 2567788888888888764433
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=88.66 E-value=43 Score=36.92 Aligned_cols=196 Identities=10% Similarity=0.098 Sum_probs=105.0
Q ss_pred CCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEc----CCCCE--EEEEe-CC---CceEEEeCCCcccccce
Q 001318 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNV--LVSSG-AD---SQLCVWSSDGWEKQKNR 927 (1101)
Q Consensus 858 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s----~dg~~--l~s~s-~D---~~v~iwd~~~~~~~~~~ 927 (1101)
...+|+....++-+.+||+. |+.++.+. .++.+.|..- -+|+. |+.++ .+ .+|++|.++.... .
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---E 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---E
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---c
Confidence 34566667778899999987 55566553 2344444332 13433 44444 32 4699998864211 1
Q ss_pred eeecCCC-C-C-CCCCCCeEEEE--cC-CCcEEEE--EeCCeEEEEEcC---Cc----eeeeeccCCCCCCCeeEEEEcC
Q 001318 928 FLQIPTG-R-T-PTAQSDTRVQF--HQ-DQIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFSC 992 (1101)
Q Consensus 928 ~~~~~~~-~-~-~~~~~v~~~~~--s~-dg~~la~--~~d~~v~vwd~~---~~----~~~~~~~~~~h~~~i~~l~~sp 992 (1101)
+..+... + . .....+..+|+ ++ +|.+.+. ..+|.+..|.+. ++ +.++.|.. ...+-.+....
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDD 217 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDD 217 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEET
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEec
Confidence 1111110 0 0 11123566665 43 5665554 477888877664 22 45677764 45889999988
Q ss_pred CCCEEEEEEcCCeEEEEEcCC-----ceeeeecCCCcccCCCCCCCCccceEEEEeCC-CCCEEEEEecCCcEEEEeccC
Q 001318 993 DSQLVYACFLDATVCVFSAAN-----LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 993 dg~~l~s~s~dg~v~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~-d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
...+|+.+-+|.-|.-|+.+. +.++.... ...+ ...+.-+++-..++ .|.+|++.=.+++..||+...
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l-----~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGL-----VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB------S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeeccc-cccc-----ccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 888999999998888888752 23332222 1112 22355455655442 234556666678899999876
Q ss_pred CC
Q 001318 1067 SE 1068 (1101)
Q Consensus 1067 ~~ 1068 (1101)
..
T Consensus 292 ~~ 293 (381)
T PF02333_consen 292 PN 293 (381)
T ss_dssp T-
T ss_pred CC
Confidence 54
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.58 E-value=4.3 Score=43.95 Aligned_cols=170 Identities=11% Similarity=0.061 Sum_probs=93.5
Q ss_pred eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe-eee-cCccc----Cee-EEEEcCCCCEEEEEeCC
Q 001318 838 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKL-KGHSK----RIT-GLAFSHALNVLVSSGAD 910 (1101)
Q Consensus 838 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~dg~~l~s~s~D 910 (1101)
.++.+......+..+-..| |+++|..-+. ..+.|+++.+...- +++ ....+ .|+ ++..-..|.-|..++.|
T Consensus 212 ~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred hhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3444555566788889999 8988877654 68889988764322 122 11111 122 22223456778888999
Q ss_pred CceEEE-eCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEE
Q 001318 911 SQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHA 988 (1101)
Q Consensus 911 ~~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l 988 (1101)
|.|.-| |+..+..........+ .-...++..+.=..+.+-++. ..+|.+.++.....+.+-.-. --..+..+
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f---~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~~ 363 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNF---KLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQLV 363 (733)
T ss_pred CceeeeeeeecCCCCcceeeecc---ccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCccee
Confidence 998877 4443322111111111 111112222221222233333 466677766554433322111 13367788
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 989 TFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 989 ~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
++||.+.+|++- +.|.|+++.+++...
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCC
Confidence 999999999865 567899998876544
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=87.90 E-value=22 Score=41.23 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=73.6
Q ss_pred ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE
Q 001318 867 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 867 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
..+...++|. .|.++..+.........+.+.++|.+++..+ ..+..+|+.+.. ... .....+.. ..-..+.
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~~--~~l~~~~~---~~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV-IWE--YDLPGGYY---DFHHDID 196 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E-EEE--EE--TTEE----B-S-EE
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE-EEe--eecCCccc---ccccccE
Confidence 3445555553 3444444332222222266778898887665 668888876532 111 12221100 0125678
Q ss_pred EcCCCcEEEEEe--------------CCeEEEEEcCCceeeeeccCCCCC-------------------------CCeeE
Q 001318 947 FHQDQIHFLVVH--------------ETQLAIFETTKLECVKQWVPRESS-------------------------APITH 987 (1101)
Q Consensus 947 ~s~dg~~la~~~--------------d~~v~vwd~~~~~~~~~~~~~~h~-------------------------~~i~~ 987 (1101)
.-|+|.+|+.+. +..|..+| .+|+.+..|....|- -.+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999888754 23566677 777777665432221 24788
Q ss_pred EEEcC-CCCEEEEEEcCCeEEEEEcCCceeeeecCC
Q 001318 988 ATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 988 l~~sp-dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1022 (1101)
+.+.+ |+.+|+++-.-..|...|..+++..-.+..
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 99988 666666555555899999999998877764
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.70 E-value=16 Score=42.83 Aligned_cols=211 Identities=11% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEEEE--------------------------------------------------
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQIYN-------------------------------------------------- 875 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd-------------------------------------------------- 875 (1101)
.+.|.+.+||. |.+.++....+..|-+++
T Consensus 112 ~nGIvaa~wS~-DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~ 190 (1243)
T COG5290 112 SNGIVAASWSA-DEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPY 190 (1243)
T ss_pred cCceEEEeecc-CCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcc
Q ss_pred -eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCC----CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 876 -VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 876 -~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
+..|.+.....+. .-++|-.|..+.+.+... ..+++|.-++ +......+..+.-..+.|-|.
T Consensus 191 ~vD~G~l~avd~~k----~~i~wrgD~~y~~v~r~Ee~prra~rvysreg---------~lds~sep~~g~e~~LSWkpq 257 (1243)
T COG5290 191 MVDYGDLFAVDTNK----KIIFWRGDTEYNLVGRSEERPRRAFRVYSREG---------QLDSASEPVTGMEHQLSWKPQ 257 (1243)
T ss_pred cccccceeEeeCCc----eEEEEccCcceeeecchhcccccceeeecccc---------ccccccCCcccchhccccccC
Q ss_pred CcEEEE-EeCC-----eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCc
Q 001318 951 QIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1024 (1101)
Q Consensus 951 g~~la~-~~d~-----~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 1024 (1101)
|..+++ +.|| .|..+..+..+.=.--...+-...+..++|.-....++.+ ....|.+|-..+....-+.. .
T Consensus 258 gS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e--~ 334 (1243)
T COG5290 258 GSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVE--R 334 (1243)
T ss_pred CceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEe--e
Q ss_pred ccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccccCCCCCCCCCC
Q 001318 1025 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGST 1082 (1101)
Q Consensus 1025 ~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~~~~~~~~~~~~ 1082 (1101)
..|.- .+ +.|+|...+.+...+ .+.|..-.+......=...-|+++|.+
T Consensus 335 ~ip~~-----s~---vkwhpe~~nTl~f~d-~~~I~~V~f~~k~~~~~s~~p~d~g~~ 383 (1243)
T COG5290 335 QIPGI-----SY---VKWHPEEKNTLLFRD-GERILRVFFSEKKTHHGSEYPFDNGTS 383 (1243)
T ss_pred cCCCc-----ce---eeeccccCcEEEEec-CCeEEEEEeehhhhcCCcccCccCCce
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.06 E-value=2.5 Score=45.62 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=97.4
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCcee-eEe-cCCCC----CeE-EEEEecCCCcEEEEEeccCeEEEE-E
Q 001318 804 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM-ATF-MPPPP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N 875 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~-~~~-~~~~~----~i~-~l~~sp~d~~~lasg~~dg~v~vw-d 875 (1101)
.-..+..+-..|||+++.+-+..++.++++.+.... +++ ....+ .|+ .+..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 345677888999999999988888999988754322 111 11111 122 222233 67777888999998887 4
Q ss_pred eecce-----EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 876 VRVDE-----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 876 ~~~~~-----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
+..+. .++.++-...+|..+.--.+.+-+++-+..|++.++.....+. ...+.. ...+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---lL~~~~------~~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL---LLFERA------YQAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc---eehhhh------hcCcceeeeCcc
Confidence 44321 1222222223343333333445677788888888776443221 111111 125678999999
Q ss_pred CcEEEEEeCCeEEEEEcCCcee
Q 001318 951 QIHFLVVHETQLAIFETTKLEC 972 (1101)
Q Consensus 951 g~~la~~~d~~v~vwd~~~~~~ 972 (1101)
+.++++-..+.++++.+++...
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cchheeecCCceEEEEecCCCC
Confidence 9999998889999998876544
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=85.99 E-value=1.1e+02 Score=38.75 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=18.8
Q ss_pred cccceEEEEEcCCCceEEeeecCceE
Q 001318 737 RATKISRLIFTNSGNAILALASNAIH 762 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i 762 (1101)
+-..+.+++++|||..+++-..+-.|
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhh
Confidence 55678899999999977665554333
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=85.74 E-value=62 Score=35.72 Aligned_cols=199 Identities=8% Similarity=0.086 Sum_probs=106.7
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEec---CCCcE--EEEEe-cc---CeEEEEEeec--ceEee
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP---QDNNI--IAIGM-DD---SSIQIYNVRV--DEVKS 883 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp---~d~~~--lasg~-~d---g~v~vwd~~~--~~~~~ 883 (1101)
...+++... .+.+.+||+. |+.++.+. .+..+.+..-. -+++. ||+++ .+ ..|++|.+.. +. +.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 334455444 7889999996 56666664 23444443321 02332 44444 32 4799998863 43 33
Q ss_pred eecC-------cccCeeEEEEc--C-CCC-EEEEEeCCCceEEEeCCCccc--ccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 884 KLKG-------HSKRITGLAFS--H-ALN-VLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 884 ~l~~-------h~~~V~~l~~s--~-dg~-~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
.+.. -...+..+|+- + +|. +++..+.+|.+..|.+..... .....++.+... ..+..++....
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe 218 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDE 218 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEecc
Confidence 2221 12346777773 3 454 556677889999888853221 222333333322 36788888888
Q ss_pred CcEEEEE-eCCeEEEEEcCC-----ceeeeeccCCCCCCCeeEEEEc--CCCC-EEEEEE-cCCeEEEEEcCC-ceeeee
Q 001318 951 QIHFLVV-HETQLAIFETTK-----LECVKQWVPRESSAPITHATFS--CDSQ-LVYACF-LDATVCVFSAAN-LKLRCR 1019 (1101)
Q Consensus 951 g~~la~~-~d~~v~vwd~~~-----~~~~~~~~~~~h~~~i~~l~~s--pdg~-~l~s~s-~dg~v~vwd~~~-~~~~~~ 1019 (1101)
..+|.++ .+.-|.-|+.+. ++.+......+....|-.|++- .+++ ||++.+ .+++..||+... ...+..
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~ 298 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGS 298 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEE
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccce
Confidence 8888887 556788887752 2233222222346678888874 3443 555444 567899999875 455666
Q ss_pred cCC
Q 001318 1020 INP 1022 (1101)
Q Consensus 1020 ~~~ 1022 (1101)
|+.
T Consensus 299 f~i 301 (381)
T PF02333_consen 299 FRI 301 (381)
T ss_dssp EEE
T ss_pred EEe
Confidence 653
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.62 E-value=11 Score=47.50 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=40.5
Q ss_pred EEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 944 RVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 944 ~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
+..+......+.....+.+-+|+.........+...++. .++++..++++..||.+..||+..+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 203 QVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQL-------ESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred eeeeecCCCcceeeeeeeeeehhcccccchhhccccccc-------CccCCceEEEEEecCCEEeeecCCCce
Confidence 333333333333344445555555444443333332222 288999999999999999999999865
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.61 E-value=5.3 Score=43.43 Aligned_cols=124 Identities=10% Similarity=0.122 Sum_probs=79.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
.+++|.++.||+|.+ ++|+--.|.+|.+.+....+....... ..+.-+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeEE
Confidence 457999999999999 699999999999999854332211000 12233456899999876 5566
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 487 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 487 (1101)
.....| +-+|.+...+ +.....+.|.-.|+--.|+++..-.+|+|+-..+++.=+-++++.
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 655555 6777665432 222235568889999999999885333343344454444444443
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=84.69 E-value=45 Score=33.21 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=85.4
Q ss_pred cEEEEEeccCeEEEEEeec--ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC------ceEEE---eCCCccccccee
Q 001318 860 NIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVW---SSDGWEKQKNRF 928 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~--~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~------~v~iw---d~~~~~~~~~~~ 928 (1101)
..|..+...+.|.+|++.. .+.+.++..- +.|..+.++..|++|+|-=.+. .+|+| +....+.....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~- 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR- 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE-
Confidence 4454446678899999983 4556666544 7899999999999999864332 45554 32211111110
Q ss_pred eecCCCC------------------CCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCcee-ee-----ecc---CCCC
Q 001318 929 LQIPTGR------------------TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-VK-----QWV---PRES 981 (1101)
Q Consensus 929 ~~~~~~~------------------~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~-~~-----~~~---~~~h 981 (1101)
..+ .|| .+....+.+++..|-..-|+++.++.+.+|.+..... .. .+. ...|
T Consensus 107 vRi-aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 VRI-AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEE-cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 000 010 0112356788888877778888889999998765443 11 110 0011
Q ss_pred -CCCeeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001318 982 -SAPITHATFSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 982 -~~~i~~l~~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
.-.+..++|. +.|+|..+ +-.++|..+
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 2335666663 66777665 567777654
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=84.50 E-value=5.5 Score=40.48 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=52.7
Q ss_pred EEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCccccccccc-------CCCCCeEEEEEecCCCeEEE
Q 001318 352 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 352 ~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~las 424 (1101)
.+..++.+ |++-+.+|.+++||+.+++.+... ..+. .++. .....|..+.++.+|.-|++
T Consensus 17 ~l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ 83 (219)
T PF07569_consen 17 FLECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVT 83 (219)
T ss_pred EEEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEE
Confidence 35667887 667788899999999998876531 1111 1122 46678999999988887776
Q ss_pred EEcCCeEEEEEccCCc
Q 001318 425 AYSRHIVQIYSYHGGD 440 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~ 440 (1101)
-+ +|..+.|+.+-+.
T Consensus 84 ls-ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 84 LS-NGDSYSYSPDLGC 98 (219)
T ss_pred Ee-CCCEEEeccccce
Confidence 55 5778888876543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.27 E-value=26 Score=39.11 Aligned_cols=93 Identities=10% Similarity=0.105 Sum_probs=61.7
Q ss_pred cCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCC---CEEEEEeCCC
Q 001318 507 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK---NRFLAAGDDF 583 (1101)
Q Consensus 507 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg 583 (1101)
++.|..++-.+.+|.+.++-.+..+....+......|.|-.++- +.++|.....-.+.-++|+|+. ..++.-..|.
T Consensus 112 s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i-~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdn 190 (741)
T KOG4460|consen 112 SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV-AERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDN 190 (741)
T ss_pred cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc-cceeeccCCceeeeeccccCCccCCceEEEEecCc
Confidence 55667888888889877764443344444444444455544443 3356665555567778899986 6788888999
Q ss_pred cEEEEECCCCceeEEEc
Q 001318 584 SIKFWDMDSVQLLTSID 600 (1101)
Q Consensus 584 ~i~iwd~~~~~~~~~~~ 600 (1101)
.||+||+.....+....
T Consensus 191 viRiy~lS~~telylqp 207 (741)
T KOG4460|consen 191 VIRIYSLSEPTELYLQP 207 (741)
T ss_pred EEEEEecCCcchhhccC
Confidence 99999998776664443
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=84.23 E-value=25 Score=39.86 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=60.3
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeee-cCCCCCCCCCCCeEEEEcCCC------cEEEEE--e--
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQ------IHFLVV--H-- 958 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~dg------~~la~~--~-- 958 (1101)
..-+.|+|.|||++|++--..|.|++++..++.......+. .... ........++|+|+- .+|.++ .
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~--~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVND--AQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceecc--CCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 45688999999988877655689999986654321111111 1010 013578899999885 234332 1
Q ss_pred -------CCeEEEEEcCCc-------eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC
Q 001318 959 -------ETQLAIFETTKL-------ECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1003 (1101)
Q Consensus 959 -------d~~v~vwd~~~~-------~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d 1003 (1101)
...|.-|.+... +.+..-.+......-..|+|.|||.++++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223444554321 111111111111224567899999877755544
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=84.23 E-value=4.9 Score=40.79 Aligned_cols=69 Identities=10% Similarity=0.198 Sum_probs=47.2
Q ss_pred EecCCCeEEEEEcCCeEEEEEccCCceeeeeee----ec-------cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC
Q 001318 415 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE----ID-------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 483 (1101)
Q Consensus 415 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~----l~-------~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 483 (1101)
+..++++|++.+.+|.+++||+.+++.+..... +. .....|..+.++.+|. -+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEe-CCCEEEecc
Confidence 556899999999999999999999876532211 11 2446677788887776 344444 466777775
Q ss_pred CCC
Q 001318 484 TNG 486 (1101)
Q Consensus 484 ~~~ 486 (1101)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 433
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=83.76 E-value=4.6 Score=39.39 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=25.6
Q ss_pred CCeEEEEEecC------CCeEEEEEcCCeEEEEEccC
Q 001318 408 VSVNRVIWSPD------GSLFGVAYSRHIVQIYSYHG 438 (1101)
Q Consensus 408 ~~V~~l~~spd------g~~las~~~d~~i~iwd~~~ 438 (1101)
..|.+++|||- +.+||+...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 38999999994 34788889999999998664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=83.30 E-value=30 Score=40.19 Aligned_cols=129 Identities=9% Similarity=0.006 Sum_probs=71.0
Q ss_pred EEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCC-CCeeEEEEcCCCCEEEEEEc-------------CCeEEEEE
Q 001318 945 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS-APITHATFSCDSQLVYACFL-------------DATVCVFS 1010 (1101)
Q Consensus 945 ~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~-~~i~~l~~spdg~~l~s~s~-------------dg~v~vwd 1010 (1101)
+.+.++|.+++... ..+..+|+. |+.+..+...+.. .-=..+..-|+|.+|+.+.. .-.|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 56678888877644 888888885 5555555433211 11245678899999888772 12366677
Q ss_pred cCCceeeeecCCCcccC-C----------------CCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccccC
Q 001318 1011 AANLKLRCRINPSAYLP-A----------------GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1073 (1101)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~-~----------------~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~~~ 1073 (1101)
.+|+.+..+....++. . +....+...-++.+.+.++.+++++-.-..|...|..+++-.|.+
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 8888877665444431 1 111223445589999977667777666668999998888877777
Q ss_pred CCC
Q 001318 1074 PPP 1076 (1101)
Q Consensus 1074 ~~~ 1076 (1101)
.++
T Consensus 310 g~~ 312 (477)
T PF05935_consen 310 GPP 312 (477)
T ss_dssp S-S
T ss_pred CCC
Confidence 665
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.11 E-value=11 Score=46.99 Aligned_cols=147 Identities=14% Similarity=0.196 Sum_probs=91.3
Q ss_pred eccCeEEEEEeecceEeeeecCcccCeeEEEEc--------CCCCEEEEEeCCCceEEEeCCCcccccce--eeecCCCC
Q 001318 866 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGR 935 (1101)
Q Consensus 866 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s--------~dg~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~ 935 (1101)
+.|..+.+|+..++.....+.+-+..|..|..- |.=++|...+.--.|.++-+.-.+..... ....+. -
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence 358889999999987788888877777777643 23244444444445666655432211111 111100 0
Q ss_pred CCCCCCCeEEEEcCCCcEEEEEeCCeEE--EEEcCCc---e-eee-------------e-ccC-CCCCCCeeEEEEcCCC
Q 001318 936 TPTAQSDTRVQFHQDQIHFLVVHETQLA--IFETTKL---E-CVK-------------Q-WVP-RESSAPITHATFSCDS 994 (1101)
Q Consensus 936 ~~~~~~v~~~~~s~dg~~la~~~d~~v~--vwd~~~~---~-~~~-------------~-~~~-~~h~~~i~~l~~spdg 994 (1101)
..+...|.++....+|+.+.+|.||.|. +|....+ + |-+ . +.. ..+..+|..+++...-
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 0011467888889999999999888544 2222221 1 110 0 111 2457799999998777
Q ss_pred CEEEEEEcCCeEEEEEcCC
Q 001318 995 QLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 995 ~~l~s~s~dg~v~vwd~~~ 1013 (1101)
..|.+-+.-|+|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 7899999999999999976
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.93 E-value=87 Score=38.66 Aligned_cols=249 Identities=12% Similarity=0.061 Sum_probs=115.4
Q ss_pred EEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEE
Q 001318 744 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 823 (1101)
Q Consensus 744 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 823 (1101)
.++..-|+.+.+|+.+|.+.+|.+........... .. ++ ..... .-+..+|..+...+.-.++.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~--------~~-~~~~~----~~~kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT--------ET-VKFEK----EFSKKPINKLLVCASLELLLIL 85 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc--------ch-hHHhh----hhccchhHHHhhcchhcchhee
Confidence 34455677899999999999998754322111100 00 00 00000 0135667777777777778888
Q ss_pred eCCeEEEEECCCCceeeEecCCCCCeEEEEEe--cC-CC--cEEEEEe-ccC-eEEEEEeecceEeeeecCcccCeeEEE
Q 001318 824 SGGKISLFNMMTFKTMATFMPPPPAATFLAFH--PQ-DN--NIIAIGM-DDS-SIQIYNVRVDEVKSKLKGHSKRITGLA 896 (1101)
Q Consensus 824 sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s--p~-d~--~~lasg~-~dg-~v~vwd~~~~~~~~~l~~h~~~V~~l~ 896 (1101)
+|+.|.++++.+.+.... ..+-.++...++. +. .+ .+.+... ... ....|+-+.+..+..--+-.....+++
T Consensus 86 ~dsqi~~~~l~~~~~~~~-~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 164 (877)
T KOG2063|consen 86 SDSQIAVHKLPELEPVPS-GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA 164 (877)
T ss_pred cCCcceeeecCccccccc-ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence 899999998876655211 1111111111110 00 11 1222222 111 222333322322222111222223333
Q ss_pred EcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeee-e
Q 001318 897 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK-Q 975 (1101)
Q Consensus 897 ~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~-~ 975 (1101)
| .|..+.++-.+....+|.-.++......+...... ..-..+.--.++..++.+.|+...+-|.......+ .
T Consensus 165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~-----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE-----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred c--cceeEEEeecceeEEEecCCCccccceeeeccccc-----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 3 34444444443444445444432211111111100 11234455566667777777777776754322111 1
Q ss_pred ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeec
Q 001318 976 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 976 ~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1020 (1101)
+. -+....++.+ +.-|+++- .++.|.||+..++.+++.+
T Consensus 238 l~---ws~~P~~v~~--~~PYlIa~-~~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 238 LV---WSEVPLSVVV--ESPYLIAL-LDRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred eE---ecccchhhcc--cCceEEEE-ccccEEEEeccCHHHhhcc
Confidence 00 0112222222 45566655 4669999999999888776
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=82.81 E-value=39 Score=35.71 Aligned_cols=114 Identities=9% Similarity=0.121 Sum_probs=66.8
Q ss_pred CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE------cCCeEEEEEccCCce
Q 001318 368 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY------SRHIVQIYSYHGGDE 441 (1101)
Q Consensus 368 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------~d~~i~iwd~~~~~~ 441 (1101)
..|++||..+.+-.. .-.+-.+.|+.+.|..+.+++++|. ....+..||.++..-
T Consensus 16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 368999988765443 1334567899999998888888774 356788999988653
Q ss_pred eeeeeeecc-----ccCCeeEEEEcCCCCeEEEEEec-CCC--cEEEEeCCCCceEEE-ecCcccCeEEEee
Q 001318 442 VRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDATNGAKQYI-FEGHEAPVYSVCP 504 (1101)
Q Consensus 442 ~~~~~~l~~-----h~~~V~~~~~s~d~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~-~~~h~~~v~~v~~ 504 (1101)
.. +.+ -.++|..+.+..++..-+.+.|. .++ .|..||=.+-..+.. ..+....|..+.+
T Consensus 77 ~~----~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 77 SS----LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred ee----cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 22 332 24788888885433321444443 333 466676443333322 1222334555544
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=82.69 E-value=75 Score=34.29 Aligned_cols=210 Identities=9% Similarity=-0.033 Sum_probs=101.7
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCe--EEEEECCCCcee---------------eEecCCCCCeEEEEEecCCCcEEEEEe
Q 001318 804 PEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTM---------------ATFMPPPPAATFLAFHPQDNNIIAIGM 866 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~sdg~--i~vwd~~~~~~~---------------~~~~~~~~~i~~l~~sp~d~~~lasg~ 866 (1101)
+...|+++.+.+..+.|++-+|.. ++++++...... ...-++.......+........++.+.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 567899999999999888888765 999998532210 111123333333444431122233344
Q ss_pred ccCeEEEEEeecc----eEeeee---c-CcccCeeEEEEcCC--CCEEEEEeCCCceEEEeCCC--cccccceeeecCCC
Q 001318 867 DDSSIQIYNVRVD----EVKSKL---K-GHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDG--WEKQKNRFLQIPTG 934 (1101)
Q Consensus 867 ~dg~v~vwd~~~~----~~~~~l---~-~h~~~V~~l~~s~d--g~~l~s~s~D~~v~iwd~~~--~~~~~~~~~~~~~~ 934 (1101)
...+|.+|..... .....+ . --..++..+..+++ ...|..|+..+...++++.. ..............
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 4556666543221 111110 0 01123333333333 45666666542355555533 11111000000000
Q ss_pred CCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 935 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 935 ~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
.. ....++..-+++.+|+ +.|.....-|....+..+.... .-...+.++++. ..+|++-. +..|.|+++.++
T Consensus 201 ~~---~~p~~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 201 TS---LKPISVVQVPRDEFLL-CYDEFGVFVNLYGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred cc---cCceEEEEECCCeEEE-EECcEEEEEeCCCCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 00 0123333344454444 4444455555543121111110 113456777776 45666554 556999999999
Q ss_pred eeeeecC
Q 001318 1015 KLRCRIN 1021 (1101)
Q Consensus 1015 ~~~~~~~ 1021 (1101)
++++.+.
T Consensus 273 ~l~q~i~ 279 (302)
T smart00036 273 ELLQELA 279 (302)
T ss_pred ceEEEEe
Confidence 9988776
|
Unpublished observations. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.45 E-value=15 Score=45.84 Aligned_cols=169 Identities=13% Similarity=0.200 Sum_probs=98.7
Q ss_pred CCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE
Q 001318 333 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 412 (1101)
Q Consensus 333 ~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 412 (1101)
..|..+..-++|...-+.+-+-|.=.+.- -+.|+.+.+|+++++..... +.+-...|..
T Consensus 66 ~IP~el~eq~~~~~~~~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~ 124 (1311)
T KOG1900|consen 66 NIPDELLEQFSNIECKTDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAE-------------------YDGLSHTILK 124 (1311)
T ss_pred cCCHHHHHHhcCcceeeeeccchhhcceE--EEeCCeEEEEEcCCCCcccc-------------------ccchhhhhee
Confidence 33555555555555555666666544333 35679999999998655442 3444445555
Q ss_pred EE--------EecCCCeEEEEEcCCeEEEEEccCCceeeee------eeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 413 VI--------WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 413 l~--------~spdg~~las~~~d~~i~iwd~~~~~~~~~~------~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
+. |-|.=++|.+.+.--.|.|+-+.-.+..... ..+.-..-.|+|+....+|+ ++++ |.||
T Consensus 125 V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~-G~dg-- 199 (1311)
T KOG1900|consen 125 VGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFA-GRDG-- 199 (1311)
T ss_pred eeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEe-ecCC--
Confidence 54 3344455655555566777755432211111 11222345789999888888 5555 4555
Q ss_pred EEEeC----CCC---c-e----------------EEEec-CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC
Q 001318 479 KVWDA----TNG---A-K----------------QYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 529 (1101)
Q Consensus 479 ~iwd~----~~~---~-~----------------~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~ 529 (1101)
.+|.+ .+| + + +-.+. .+..+|..+.+. .....+++-+..|+|.+||+..
T Consensus 200 ~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID--~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 200 NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID--NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec--cccceeeeeccCceEEEEEccC
Confidence 44543 221 1 1 01122 467788888874 4446899999999999999976
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=82.28 E-value=37 Score=30.88 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEE-EeCCeEEEEEcC--------CceeeeeccCCCCCCCeeEEEEcC----CCCEEEEEEcCCeEEE
Q 001318 942 DTRVQFHQDQIHFLV-VHETQLAIFETT--------KLECVKQWVPRESSAPITHATFSC----DSQLVYACFLDATVCV 1008 (1101)
Q Consensus 942 v~~~~~s~dg~~la~-~~d~~v~vwd~~--------~~~~~~~~~~~~h~~~i~~l~~sp----dg~~l~s~s~dg~v~v 1008 (1101)
|..-.|....-.|++ +.-++|.|++.. ....+..+.. ...|++|+-.+ +++=++..+....+..
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---n~~italaaG~l~~~~~~D~LliGt~t~lla 77 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---NQEITALAAGRLKPDDGRDCLLIGTQTSLLA 77 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---CCceEEEEEEecCCCCCcCEEEEeccceEEE
Q ss_pred EEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccc
Q 001318 1009 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1071 (1101)
Q Consensus 1009 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~ 1071 (1101)
||+....-+..-. +++| +..+.+.-..+...-++..+.+..|.-+|-+-.|.-|
T Consensus 78 YDV~~N~d~Fyke----~~DG-----vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 78 YDVENNSDLFYKE----VPDG-----VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred EEcccCchhhhhh----Cccc-----eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=82.16 E-value=1.1e+02 Score=35.92 Aligned_cols=153 Identities=9% Similarity=-0.022 Sum_probs=87.1
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC-cccccce
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNR 927 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~-~~~~~~~ 927 (1101)
..+++.++ ++..+|....++.++++... +.....+. ...++.-.|.++| ++=++..+...++..... ++... .
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~-v 409 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHP-V 409 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEE-e
Confidence 37889999 88888888778888887655 22222222 2245666777776 444444333445544332 22111 1
Q ss_pred eeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e---CCeEEEEEcC--Cc--eee-ee-ccCCCCCCCeeEEEEcCCCCEE
Q 001318 928 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H---ETQLAIFETT--KL--ECV-KQ-WVPRESSAPITHATFSCDSQLV 997 (1101)
Q Consensus 928 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~---d~~v~vwd~~--~~--~~~-~~-~~~~~h~~~i~~l~~spdg~~l 997 (1101)
...... ...|..+..|+||..++.- . .++|.+--+. .+ ..+ .. .....-...+.++.|..++.+.
T Consensus 410 ~v~~~~-----~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la 484 (557)
T PRK13615 410 AVSWTA-----TGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVA 484 (557)
T ss_pred eccccC-----CCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence 111111 1479999999999999883 2 2556653322 22 122 11 1111113489999999999986
Q ss_pred EEEE---cCCeEEEEEcC
Q 001318 998 YACF---LDATVCVFSAA 1012 (1101)
Q Consensus 998 ~s~s---~dg~v~vwd~~ 1012 (1101)
+.+. .+..+++..+.
T Consensus 485 Vl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 485 TLTLAPDGERQVELHQVG 502 (557)
T ss_pred EEeccCCCCceEEEEECC
Confidence 6552 33456666665
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=82.09 E-value=1.1e+02 Score=35.66 Aligned_cols=154 Identities=9% Similarity=0.060 Sum_probs=76.2
Q ss_pred CCcEEEEEecc-----CeEEEEEeecce--EeeeecC-cccCeeEEEEcCCCCEEEEEeCCC-----ceEEEeCCCcccc
Q 001318 858 DNNIIAIGMDD-----SSIQIYNVRVDE--VKSKLKG-HSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQ 924 (1101)
Q Consensus 858 d~~~lasg~~d-----g~v~vwd~~~~~--~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~D~-----~v~iwd~~~~~~~ 924 (1101)
++++++.|+.+ ..+.+||+.+.+ .+..+.. ...+-...+..-++++.+.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W- 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKW- 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEE-
Confidence 66788888765 358888887643 2222210 111111112223567777777653 366777766431
Q ss_pred cceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeC----CeEEEEEcCCceeeeeccCC--CCCCCeeEEEEcCCCCEE
Q 001318 925 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLECVKQWVPR--ESSAPITHATFSCDSQLV 997 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d----~~v~vwd~~~~~~~~~~~~~--~h~~~i~~l~~spdg~~l 997 (1101)
..+............ ..++ .-+++.++. +.+ ..+.+||+.+.+....-... .......++ ..-+++++
T Consensus 307 --~~~~~~~~~~~~R~~-~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iy 381 (470)
T PLN02193 307 --FHCSTPGDSFSIRGG-AGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIV 381 (470)
T ss_pred --EeCCCCCCCCCCCCC-cEEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEE
Confidence 111111110000011 1222 235666665 333 46899999887654432110 001111222 23367777
Q ss_pred EEEEcC--------------CeEEEEEcCCceee
Q 001318 998 YACFLD--------------ATVCVFSAANLKLR 1017 (1101)
Q Consensus 998 ~s~s~d--------------g~v~vwd~~~~~~~ 1017 (1101)
+.|+.+ ..+.+||..+.+..
T Consensus 382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 382 IFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred EECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 777753 24888999887654
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=82.08 E-value=84 Score=34.38 Aligned_cols=67 Identities=7% Similarity=-0.057 Sum_probs=36.9
Q ss_pred CCcEEEEEe------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC----eEEEEEcCCceee
Q 001318 950 DQIHFLVVH------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAANLKLR 1017 (1101)
Q Consensus 950 dg~~la~~~------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg----~v~vwd~~~~~~~ 1017 (1101)
+++..+.+. ...+..||+.+.+-...-.... .......+..-++++.+.|+.++ .+.+||..+.+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 455555532 2368889988765433211111 11222233344677777777654 2568888877653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=82.04 E-value=87 Score=34.57 Aligned_cols=154 Identities=11% Similarity=0.045 Sum_probs=74.1
Q ss_pred CCcEEEEEecc-----CeEEEEEeecce--EeeeecC---cccCeeEEEEcCCCCEEEEEeCC-----------CceEEE
Q 001318 858 DNNIIAIGMDD-----SSIQIYNVRVDE--VKSKLKG---HSKRITGLAFSHALNVLVSSGAD-----------SQLCVW 916 (1101)
Q Consensus 858 d~~~lasg~~d-----g~v~vwd~~~~~--~~~~l~~---h~~~V~~l~~s~dg~~l~s~s~D-----------~~v~iw 916 (1101)
++++++.|+.+ ..+.+||..+.+ .+..+.. ........+..-++++.+.||.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56788888754 257888887643 2322211 11111222223356777777754 246778
Q ss_pred eCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-Ee-------------CCeEEEEEcCCceeeeeccCC-CC
Q 001318 917 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH-------------ETQLAIFETTKLECVKQWVPR-ES 981 (1101)
Q Consensus 917 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~-------------d~~v~vwd~~~~~~~~~~~~~-~h 981 (1101)
|..+.+= ..+............ ..++ .-+++.++. +. ...+.+||..+.+-...-... ..
T Consensus 165 d~~~~~W---~~l~~~~~~~~~r~~-~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P 239 (341)
T PLN02153 165 NIADGKW---VQLPDPGENFEKRGG-AGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP 239 (341)
T ss_pred ECCCCeE---eeCCCCCCCCCCCCc-ceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence 8776432 111111100000011 1122 235555554 22 146889998877654332100 00
Q ss_pred -CCCeeEEEEcCCCCEEEEEEcC--------------CeEEEEEcCCceee
Q 001318 982 -SAPITHATFSCDSQLVYACFLD--------------ATVCVFSAANLKLR 1017 (1101)
Q Consensus 982 -~~~i~~l~~spdg~~l~s~s~d--------------g~v~vwd~~~~~~~ 1017 (1101)
.....++ ..-++++++.|+.. ..|..+|..+.+-.
T Consensus 240 ~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 240 SARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CCcceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 1111222 23367777777742 25788888777644
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=81.79 E-value=90 Score=38.70 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=52.0
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeec----CCCcccCCCCCCCCc-----cceEEEEeCCCCCEEEE
Q 001318 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI----NPSAYLPAGVSSSNV-----HPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 982 ~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~----~~~~~~~~~~~~~~v-----~~~~i~~~~~d~~~l~s 1052 (1101)
.+.|.+++...-+.+++.+..||+|.++|-.+-+.+... ........-.+.+.- .++.++||| .+..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEE
Confidence 567888888888889999999999999998887666544 111100000001101 123588999 4677888
Q ss_pred EecCCcEE
Q 001318 1053 GLSDGGVH 1060 (1101)
Q Consensus 1053 ~~~dg~v~ 1060 (1101)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888855
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=81.64 E-value=40 Score=38.36 Aligned_cols=54 Identities=6% Similarity=-0.044 Sum_probs=37.9
Q ss_pred CCeEEEEcCCCcEEEEEe-CCeEEEEEcCCceee--eecc---CCCCCCCeeEEEEcCCC
Q 001318 941 SDTRVQFHQDQIHFLVVH-ETQLAIFETTKLECV--KQWV---PRESSAPITHATFSCDS 994 (1101)
Q Consensus 941 ~v~~~~~s~dg~~la~~~-d~~v~vwd~~~~~~~--~~~~---~~~h~~~i~~l~~spdg 994 (1101)
....++|.|||++|++-. .|+|++++..++... ..+. ..........|+|+||-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 458999999999988876 699999987654322 1111 11125678999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=81.29 E-value=1.6e+02 Score=38.79 Aligned_cols=382 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred ccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecC
Q 001318 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528 (1101)
Q Consensus 449 ~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~ 528 (1101)
+.|-..++.|.-+++|.++.+ .|+.++.||...+.-.-.-......+..+.. ..||++.+ =+.+..+.+=+-.
T Consensus 359 kaH~A~LTgv~~~~~ge~lRl----Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~--qgdG~lYA-k~~~~l~nLSs~~ 431 (1774)
T PF11725_consen 359 KAHIAHLTGVHTDPDGEQLRL----HDDRLYQFDPNTARWKPPPDKSDTPFSSLSR--QGDGKLYA-KDDDTLVNLSSGQ 431 (1774)
T ss_pred HHHHHHhhccccCCCCCeEEe----ecCceeeeccccceecCCCCcccchhhhhcc--cCCCceEe-cCCCceeecCCCC
Q ss_pred CCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE-EEEEeCCCcEEEEECCCC------ceeEEEcC
Q 001318 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR-FLAAGDDFSIKFWDMDSV------QLLTSIDA 601 (1101)
Q Consensus 529 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~------~~~~~~~~ 601 (1101)
....... .+....+.+++.. ++++-....+.+|++... +....+..
T Consensus 432 ~~~~~v~---------------------------~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L 484 (1774)
T PF11725_consen 432 MSEAEVD---------------------------KLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQL 484 (1774)
T ss_pred cchhhhh---------------------------hcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeec
Q ss_pred CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccc
Q 001318 602 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 681 (1101)
Q Consensus 602 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1101)
.++.....+|.++++ .|++...+|.++.=++.....---.+........+......
T Consensus 485 ~dG~a~A~~VgLs~d--rLFvADseGkLYsa~l~~~~~~~~~l~~~p~~~~~~~~~~~---------------------- 540 (1774)
T PF11725_consen 485 ADGKAQAQSVGLSND--RLFVADSEGKLYSADLPAAQDNEPKLKLMPEPAYQLLGSAL---------------------- 540 (1774)
T ss_pred cCCchhhhheeecCC--eEEEEeCCCCEEecccccccCCCcceEeccccccccccccc----------------------
Q ss_pred cccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCce
Q 001318 682 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI 761 (1101)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 761 (1101)
.+...++|...+ ..+.+.++.=+..|....+.-.+..
T Consensus 541 ------------------G~~~~VtGF~~g-------------------------d~G~lhAlikd~~GQ~Hs~aLde~~ 577 (1774)
T PF11725_consen 541 ------------------GGDHKVTGFISG-------------------------DDGQLHALIKDRQGQRHSHALDEQG 577 (1774)
T ss_pred ------------------cccceeeccccC-------------------------CCCeeeEEEeccCCceeeccccccC
Q ss_pred EEe---eeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEE-----
Q 001318 762 HLL---WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFN----- 832 (1101)
Q Consensus 762 i~i---w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd----- 832 (1101)
-.+ |++ +..++..--.+.........-..-.-++.=.+|- +|.|.-||
T Consensus 578 ~~~~pGWNL-----------------------Sd~Lvl~N~~GL~~~~~p~~~~~ldl~r~G~v~L~~G~i~~wD~ttq~ 634 (1774)
T PF11725_consen 578 SQLQPGWNL-----------------------SDALVLDNTRGLPKPPAPAPHEILDLGRAGLVGLQDGKIQYWDSTTQC 634 (1774)
T ss_pred CccCCCCcc-----------------------cceeEeeccCCCCCCCCCChHHhhccccccceeeccceEeeecCcchh
Q ss_pred -----------CCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCC
Q 001318 833 -----------MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 901 (1101)
Q Consensus 833 -----------~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg 901 (1101)
++.|---..+--..+.|..+.+++ ...-++-|...-.-.----.+-+.-..+.|-.+.+..-.---++
T Consensus 635 W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~-~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~~~~i~a~Avv~~ 713 (1774)
T PF11725_consen 635 WKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQ-EHPSIAHGDNNVFALPQRRNKVELGDALEGLEDRVITAFAVVND 713 (1774)
T ss_pred hhhccCcCHHHHhccccCCceEecCCceeeeeccc-CCCccccCCCcccccccccCCCCCCccccCCCcCcceeEEEEcC
Q ss_pred CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEE
Q 001318 902 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA 963 (1101)
Q Consensus 902 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~ 963 (1101)
+.+++....|.+.... ..+. .......... +.|..+++.....+.|...+|.++
T Consensus 714 ~~fvald~qg~lt~h~-k~g~-----p~~l~~~gl~--G~ik~l~lD~~~nL~Alt~~G~Lf 767 (1774)
T PF11725_consen 714 NKFVALDDQGDLTAHQ-KPGR-----PVPLSRPGLS--GEIKDLALDEKQNLYALTSTGELF 767 (1774)
T ss_pred CceEEeccCCcccccc-CCCC-----CccCCCCCCC--cchhheeeccccceeEecCCCcee
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=81.17 E-value=1.3e+02 Score=36.06 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=33.9
Q ss_pred CcchhHHHHHHHH-------HhHhcCccccHHHHHHHhhcCChHHHHHHhcc
Q 001318 2 SSLSRELVFLILQ-------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSG 46 (1101)
Q Consensus 2 ~~~~~e~vrli~q-------l~~esg~~~~~~~~~~~i~~g~w~~~~~~l~~ 46 (1101)
|--|++++|-++| =.+|||.. .|+.+|.-|+-|-|--+|..
T Consensus 61 S~~k~~~l~wLlqhGidv~vqD~ESG~t----aLHRaiyyG~idca~lLL~~ 108 (1267)
T KOG0783|consen 61 SENKNSFLRWLLQHGIDVFVQDEESGYT----ALHRAIYYGNIDCASLLLSK 108 (1267)
T ss_pred ccchhHHHHHHHhcCceeeeccccccch----HhhHhhhhchHHHHHHHHhc
Confidence 3458899999999 67788874 89999999999988887764
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=80.46 E-value=8 Score=37.69 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=26.0
Q ss_pred cCeeEEEEcCCC------CEEEEEeCCCceEEEeCCC
Q 001318 890 KRITGLAFSHAL------NVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 890 ~~V~~l~~s~dg------~~l~s~s~D~~v~iwd~~~ 920 (1101)
..|.+++|||-| .+|++.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999854 4788999999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.42 E-value=47 Score=42.23 Aligned_cols=37 Identities=32% Similarity=0.524 Sum_probs=29.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCccee
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERL 381 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~ 381 (1101)
-......++|+|... ++|.|+..|.|.++-...-+..
T Consensus 34 ~~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCCCCcceeeccccc-eEEEEEecccEEEecccceEEE
Confidence 345677899999998 6999999999999987654443
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.27 E-value=0.37 Score=52.40 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=87.7
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
++...+.-.+..-.++|.-+|..+++.+...+.+.+||+.+...-. +-.+-+..-.-+.|+
T Consensus 66 q~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-------------------LE~gg~~s~sll~ws 126 (615)
T KOG2247|consen 66 QVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-------------------LESGGTSSKSLLAWS 126 (615)
T ss_pred ceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-------------------HhccCcchHHHHhhc
Confidence 3333444566777888888888777788888999999997643211 111112222238899
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
+.+..++.+-..|.+.|++..+.+.+. ....|...+++++|.+.+. .+.++.|..+.+-.
T Consensus 127 Kg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 127 KGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTT 186 (615)
T ss_pred cCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhh
Confidence 999999999999999999998866544 3444999999999999885 77888887765544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1101 | ||||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-04 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 9e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-04 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 9e-10 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-04 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 9e-10 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-04 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 9e-10 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-04 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 9e-10 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-04 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-04 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-04 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-04 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-04 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-04 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-04 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-04 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-04 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-04 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-07 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 9e-06 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 1e-05 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 8e-05 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 9e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 1e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 1e-04 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-04 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-04 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-04 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 4e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 5e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 5e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 5e-04 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 6e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 6e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 7e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 8e-04 |
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1101 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.98 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.98 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.86 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.82 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.8 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.78 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.76 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.75 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.71 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.69 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.68 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.68 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.68 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.65 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.62 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.61 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.59 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.59 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.57 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.57 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.57 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.56 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.55 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.55 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.55 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.54 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.54 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.53 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.53 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.52 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.52 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.51 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.51 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.49 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.49 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.49 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.47 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.46 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.44 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.41 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.4 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.4 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.36 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.36 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.35 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.35 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.31 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.31 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.28 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.27 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.26 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.24 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.23 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.23 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.22 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.2 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.2 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.19 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.18 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.18 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.18 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.17 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.17 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.16 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.15 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.14 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.14 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.13 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.12 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.09 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.09 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.08 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.05 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.03 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.92 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.91 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.89 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.88 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.8 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.8 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.8 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.79 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.77 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.77 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.76 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.76 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.72 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.7 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.68 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.67 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.66 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.63 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.62 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.62 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.61 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.58 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.55 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.54 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.51 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.49 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.49 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.47 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.46 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.43 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.43 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.39 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.38 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.36 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.29 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.27 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.25 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.24 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.22 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.21 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.18 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.17 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.17 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.15 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.1 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.1 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.09 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.06 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.05 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.05 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.98 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.97 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.93 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.91 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.89 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.85 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.82 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.7 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.68 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.54 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.54 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.52 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.52 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.43 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.36 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.36 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.35 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.34 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.22 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.21 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.21 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.19 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.18 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.06 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.96 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.94 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.86 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.82 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.82 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.78 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.76 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.6 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.52 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.3 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.21 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.19 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.05 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.0 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.94 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.93 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.89 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.82 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.8 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.73 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.73 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.69 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.43 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.25 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.23 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.93 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.81 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.67 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.57 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.43 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 93.09 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 92.86 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 92.79 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.37 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 92.11 | |
| 2j49_A | 148 | Transcription initiation factor TFIID subunit 5; n | 90.78 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.03 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 90.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 89.39 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 86.95 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 86.52 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 85.4 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-67 Score=636.44 Aligned_cols=566 Identities=23% Similarity=0.361 Sum_probs=470.2
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
.++.+|++.|+|++|||||++ ||+|+.|+.|+|||. +++.+. .+.+|.+.|++++||||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCC
Confidence 446679999999999999996 999999999999995 566554 37899999999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
|++||+++.|++|+|||.. ++.+. .+.+|...|.+++|+|+++ +|++++.|+.+++|+.. ......+.+|...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence 9999999999999999975 44443 6889999999999999999 79999999999999954 4556677889999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|.++.+. +++..+++++.++.+++|+... ........+... +..+.++|+++++++
T Consensus 142 v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------v~~~~~~~~~~~l~~ 197 (577)
T 2ymu_A 142 VWGVAFS--PDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSS---------------------VWGVAFSPDGQTIAS 197 (577)
T ss_dssp EEEEEEC--TTSSCEEEEETTSEEEEECTTS-CEEEEEECCSSC---------------------EEEEEECTTSSCEEE
T ss_pred eeeeeee--cCCccceecccccceeccccce-eeeeeccCCCcc---------------------eeeeeecCCCCEEEE
Confidence 9998874 5567899999999999998653 233333344444 445555556668999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCC
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 658 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1101)
++.|+.|++||. +++.+..+..+. ..|.+++|+|++++|++++.|+.|++|+.. + +.+..+.+|...+.
T Consensus 198 ~~~d~~v~~w~~-~~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~-~~~~~~~~~~~~v~------ 266 (577)
T 2ymu_A 198 ASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVN------ 266 (577)
T ss_dssp EETTSEEEEECT-TSCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEEEECTT-S-CEEEEECCCSSCEE------
T ss_pred EcCCCEEEEEeC-CCcEEEEEecCC--CCEEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEEEEecCCCCEE------
Confidence 999999999996 567777777654 479999999999999999999999999954 3 45555555544322
Q ss_pred CCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccc
Q 001318 659 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
.+.+.+++..+++++.|+.+++|+.... ....+ .+|.
T Consensus 267 -----------------------------------~v~~~~d~~~l~~~~~d~~i~~w~~~~~----~~~~~----~~h~ 303 (577)
T 2ymu_A 267 -----------------------------------GVAFRPDGQTIASASDDKTVKLWNRNGQ----LLQTL----TGHS 303 (577)
T ss_dssp -----------------------------------EEEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCS
T ss_pred -----------------------------------EEEEcCCCCEEEEEeCCCEEEEEeCCCc----EEEEE----ecCC
Confidence 2345678899999999999999996531 11211 3588
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..|.+++|+|+++.+++++.|+.+++|+.... .+.. +. +|...+.+++|+|+++
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----------------------~~~~--~~--~~~~~v~~~~~s~~g~ 357 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------HLQT--LT--GHSSSVWGVAFSPDGQ 357 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------EEEE--EC--CCSSCEEEEEECTTSS
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------------------eeEE--Ee--CCCCCEEEEEECCCCC
Confidence 99999999999999999999999999986321 1111 12 2788999999999999
Q ss_pred EEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEE
Q 001318 819 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 897 (1101)
Q Consensus 819 ~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 897 (1101)
++++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|
T Consensus 358 ~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 358 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 434 (577)
T ss_dssp EEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence 999999 899999995 5788889999999999999999 9999999999999999995 57888899999999999999
Q ss_pred cCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeec
Q 001318 898 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQW 976 (1101)
Q Consensus 898 s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~ 976 (1101)
+||+++|++++.|++|++||.... .+....+|. ..|.+++|+|||++|++ +.|+.|++||. +++++..+
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~ 504 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 504 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSC------EEEEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE
Confidence 999999999999999999997542 233344444 48999999999999999 58999999995 57777777
Q ss_pred cCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC
Q 001318 977 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1056 (1101)
Q Consensus 977 ~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d 1056 (1101)
. +|...|++++|+|||++|++++.||.|+|||. +++.+..+. +|... |. +++|+| |+++|++++.|
T Consensus 505 ~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h~~~-v~--~~~fs~-dg~~l~s~~~D 570 (577)
T 2ymu_A 505 T--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GHSSS-VW--GVAFSP-DGQTIASASSD 570 (577)
T ss_dssp E--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------CCSSC-EE--EEEECT-TSSCEEEEETT
T ss_pred e--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEEEeCC
Confidence 6 78999999999999999999999999999996 677777766 44333 66 899999 78999999999
Q ss_pred CcEEEEe
Q 001318 1057 GGVHVFE 1063 (1101)
Q Consensus 1057 g~v~vW~ 1063 (1101)
|+|++||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-65 Score=621.14 Aligned_cols=577 Identities=14% Similarity=0.131 Sum_probs=449.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
+.+.+.+++|+|||++ ||+++ ++.|+|||+.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 5778899999999996 77777 5799999998876655 4789999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC----CcEEEEeCCCCceEEEecCcccCe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++ .|++++.+ +.|++|| +++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 99999999999997655432 235788999999999999999 67777654 3677776 577778899999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
++++|+++.. ..|++++.|++|++||..+.+....+..|...|.+++|+|+| ++|+++
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg---------------------~~las~ 208 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG---------------------SLFAST 208 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS---------------------SEEEEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC---------------------CEEEEE
Confidence 9999965432 369999999999999988776666777777766666666655 579999
Q ss_pred eCCCcEEEEECCCCceeEEEcCC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccccccc
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 654 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 654 (1101)
+.|++|++||+.+++.+..+... .|...|.+++|+|++++|++++.|++|++||+.++ +....+..+....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~--- 284 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE--- 284 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG---
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCcc---
Confidence 99999999999999988887421 34557999999999999999999999999999887 4444443211000
Q ss_pred CCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCc
Q 001318 655 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 734 (1101)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 734 (1101)
........++..+++++.|+.+++|+..... ....+
T Consensus 285 -------------------------------------~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~---~~~~~---- 320 (611)
T 1nr0_A 285 -------------------------------------DQQLGIIWTKQALVSISANGFINFVNPELGS---IDQVR---- 320 (611)
T ss_dssp -------------------------------------GCEEEEEECSSCEEEEETTCCEEEEETTTTE---EEEEE----
T ss_pred -------------------------------------ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC---cceEE----
Confidence 0001111256789999999999999976432 11111
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
.+|...|.+++|+|+|++|++++.|+.|++||+.. +....... .+|...|.+++|+
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~----------------------~~~~~~~~--~~h~~~v~~~~~s 376 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST----------------------GISNRVFP--DVHATMITGIKTT 376 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------CCEEECSS--CSCSSCEEEEEEC
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----------------------Cceeeecc--cCCcceEEEEEEC
Confidence 45899999999999999999999999999998743 22221111 2388899999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCceeeE---ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc
Q 001318 815 KNDSYVMSAS-GGKISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
+++. +++++ |+.+++|++.++..... .........+++|+| ++++++++ .++.+++|+ .++ +..+. |..
T Consensus 377 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~ 449 (611)
T 1nr0_A 377 SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISY 449 (611)
T ss_dssp TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSS
T ss_pred CCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCC
Confidence 8875 55555 99999999886543211 011234578899999 78777766 567899998 344 45554 788
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCC
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 969 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~ 969 (1101)
.+.+++|+|||++||+++.|++|++||+.++.... ... .+|. ..|.+++|+|||++|++ +.|+.|++||+.+
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 89999999999999999999999999998754211 122 2333 47999999999999999 5899999999988
Q ss_pred -ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee-e-eecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 970 -LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL-R-CRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 970 -~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~-~-~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
++........+|...|.+++|+|||++|++|+.|++|+|||+.++.. . ..+. +|....|. +++|+| |
T Consensus 523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~-------~h~~~~v~--~v~fs~-d 592 (611)
T 1nr0_A 523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG-------AHAMSSVN--SVIWLN-E 592 (611)
T ss_dssp TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT-------SSTTSCEE--EEEEEE-T
T ss_pred CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc-------cCcccCee--EEEEcC-C
Confidence 66654422335999999999999999999999999999999988753 2 2222 44233366 899999 5
Q ss_pred CCEEEEEecCCcEEEEecc
Q 001318 1047 PNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~ 1065 (1101)
++ |++++.||+|++|++.
T Consensus 593 ~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 593 TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TE-EEEEETTSCEEEEECC
T ss_pred CE-EEEecCCCCEEEEecc
Confidence 66 9999999999999983
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-63 Score=599.76 Aligned_cols=565 Identities=22% Similarity=0.357 Sum_probs=466.0
Q ss_pred ccccccCCCCcccccCCcccccccccCCCCCC-----CcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEe
Q 001318 291 LSKRTRPIGISDEINLPVNVLPVSFTGHSHSH-----SHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGT 365 (1101)
Q Consensus 291 ~~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~ 365 (1101)
++++.|+.||++.| ..++|++++... ...+.+|..+ ...+..+.+|...|++++|+|||++ ||+|+
T Consensus 6 ~~e~~~L~GH~~~V------~~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l~gh~~~V~~l~fspdg~~-las~~ 76 (577)
T 2ymu_A 6 VKERNRLEAHSSSV------RGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQT-IASAS 76 (577)
T ss_dssp CCEEEEECCCSSCE------EEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSE-EEEEE
T ss_pred cEEeeEECCCCCcE------EEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEeCCCCCEEEEEECCCCCE-EEEEe
Confidence 45778899999999 999999988743 2345566532 2334444569999999999999995 99999
Q ss_pred cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeee
Q 001318 366 NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 445 (1101)
Q Consensus 366 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~ 445 (1101)
.|++|+|||.. ++.+. .+.+|...|.+++|+|||++|++++.|+.+++|+.......
T Consensus 77 ~d~~i~vWd~~-~~~~~-------------------~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~--- 133 (577)
T 2ymu_A 77 DDKTVKLWNRN-GQLLQ-------------------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--- 133 (577)
T ss_dssp TTSCEEEEETT-SCEEE-------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE---
T ss_pred CCCEEEEEECC-CCEEE-------------------EEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee---
Confidence 99999999964 55544 37899999999999999999999999999999998764332
Q ss_pred eeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEE
Q 001318 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525 (1101)
Q Consensus 446 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~w 525 (1101)
...+|...|.++.|+|++. .+++++.++.+++|+. ..........|...|.++++. +++.++++++.|+.|++|
T Consensus 134 -~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~~w 207 (577)
T 2ymu_A 134 -TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS--PDGQTIASASDDKTVKLW 207 (577)
T ss_dssp -EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSEEEEE
T ss_pred -eccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeec--CCCCEEEEEcCCCEEEEE
Confidence 4678999999999999999 6899999999999994 555667777899999999874 566899999999999999
Q ss_pred ecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC
Q 001318 526 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 605 (1101)
Q Consensus 526 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 605 (1101)
|.. .+....+..+...+.+++|+|+ ++++++++.|+.|++||. +++.+..+..+.
T Consensus 208 ~~~-~~~~~~~~~~~~~v~~~~~s~d---------------------g~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~-- 262 (577)
T 2ymu_A 208 NRN-GQLLQTLTGHSSSVRGVAFSPD---------------------GQTIASASDDKTVKLWNR-NGQLLQTLTGHS-- 262 (577)
T ss_dssp CTT-SCEEEEEECCSSCEEEEEECTT---------------------SSCEEEEETTSCEEEECT-TSCEEEEECCCS--
T ss_pred eCC-CcEEEEEecCCCCEEEEEECCC---------------------CCEEEEEeCCCEEEEEeC-CCCEEEEEecCC--
Confidence 964 3455555566555555555554 457999999999999996 567777777554
Q ss_pred CCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccc
Q 001318 606 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 685 (1101)
Q Consensus 606 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1101)
..|.+++|+|++++|++++.|+.|++|+.. + +....+.+|...+.
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~-~~~~~~~~h~~~v~--------------------------------- 307 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVW--------------------------------- 307 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT-S-CEEEEECCCSSCEE---------------------------------
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-C-cEEEEEecCCCCeE---------------------------------
Confidence 479999999999999999999999999964 3 44555655554322
Q ss_pred cccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEee
Q 001318 686 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 765 (1101)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw 765 (1101)
.+.+.+++..+++++.|+.+++|++... ....+ .+|...|.+++|+|+++.+++++.|+.+++|
T Consensus 308 --------~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 308 --------GVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp --------EEEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred --------EEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEE----eCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 2345678899999999999999997642 22222 3478899999999999999999999999999
Q ss_pred eccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC
Q 001318 766 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP 844 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~ 844 (1101)
+.. +..+.. +. +|...|.+++|+||+++|++++ |+.|++||. +++.+..+.+
T Consensus 372 ~~~-----------------------~~~~~~-~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~ 424 (577)
T 2ymu_A 372 NRN-----------------------GQLLQT-LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 424 (577)
T ss_dssp ETT-----------------------CCEEEE-EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC
T ss_pred cCC-----------------------CCEEEE-ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC
Confidence 852 111111 22 2788999999999999999998 899999995 5788889999
Q ss_pred CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccc
Q 001318 845 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 924 (1101)
Q Consensus 845 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~ 924 (1101)
|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +
T Consensus 425 ~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-- 499 (577)
T 2ymu_A 425 HSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-- 499 (577)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C--
T ss_pred CCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C--
Confidence 999999999999 8999999999999999996 5778889999999999999999999999999999999999643 2
Q ss_pred cceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC
Q 001318 925 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1003 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d 1003 (1101)
++....+|. ..|.+++|+|||++|++ +.|+.|++||. +++++..+. +|.+.|++++|+|||++|++++.|
T Consensus 500 ---~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 500 ---LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp ---EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETT
T ss_pred ---EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCC
Confidence 344455555 48999999999999999 58899999996 577777776 899999999999999999999999
Q ss_pred CeEEEEE
Q 001318 1004 ATVCVFS 1010 (1101)
Q Consensus 1004 g~v~vwd 1010 (1101)
++|++||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-62 Score=590.69 Aligned_cols=568 Identities=14% Similarity=0.172 Sum_probs=440.0
Q ss_pred ccccccCCCCCC----CcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeee
Q 001318 311 LPVSFTGHSHSH----SHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF 386 (1101)
Q Consensus 311 ~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~ 386 (1101)
+.++|++++... .....+|.... ........+|.+.|++++|||||++ ||+|+.|++|+|||+.+++.....
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~l~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~-lasg~~d~~v~lWd~~~~~~~~~~-- 97 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCNGTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKT-- 97 (611)
T ss_dssp CCCEECTTSSEEEEEETTEEEEEETTC-SSCCEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEESSSTTCCEEE--
T ss_pred eEEeeCCCCCEEEeCCCCEEEEecCCC-cccCeEecCCCCceEEEEECCCCcE-EEEEeCCCCEEEeECCCCcceeeE--
Confidence 455677666421 11233444331 2233334579999999999999995 999999999999999765443211
Q ss_pred eeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcC
Q 001318 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH 462 (1101)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~ 462 (1101)
.+.+|.+.|.+++|+|||++||+++.+ +.|++||. ++... .+.+|...|++++|+|
T Consensus 98 ---------------~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~---~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 98 ---------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNG---NLTGQARAMNSVDFKP 157 (611)
T ss_dssp ---------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCB---CCCCCSSCEEEEEECS
T ss_pred ---------------eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcc---eecCCCCCceEEEECC
Confidence 367899999999999999999999875 46777774 44443 5889999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec-----
Q 001318 463 PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE----- 537 (1101)
Q Consensus 463 d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~----- 537 (1101)
++.. .|++|+.|++|++||..+++++.++.+|...|.+++|+ +++++|++++.|++|++||+.+++....+.
T Consensus 158 ~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs--pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 158 SRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN--PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234 (611)
T ss_dssp SSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred CCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEEC--CCCCEEEEEECCCcEEEEECCCCcEeeeecccccc
Confidence 9874 59999999999999999999999999999999999985 566899999999999999998877665552
Q ss_pred --CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC-CCCcCeEEEc
Q 001318 538 --APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFN 614 (1101)
Q Consensus 538 --~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s 614 (1101)
.|.. .+..++|+|++++|++++.|++|++||+.+++.+..+..... ...+..+.|
T Consensus 235 ~~~h~~---------------------~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~- 292 (611)
T 1nr0_A 235 NVAHSG---------------------SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW- 292 (611)
T ss_dssp SCSSSS---------------------CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE-
T ss_pred ccccCC---------------------CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE-
Confidence 3444 445555555666899999999999999999999888864321 112334445
Q ss_pred cCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCc
Q 001318 615 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGD 694 (1101)
Q Consensus 615 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1101)
+++.+++++.|+.+++|+..++ .....+.+|...+. .
T Consensus 293 -~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh~~~v~-----------------------------------------~ 329 (611)
T 1nr0_A 293 -TKQALVSISANGFINFVNPELG-SIDQVRYGHNKAIT-----------------------------------------A 329 (611)
T ss_dssp -CSSCEEEEETTCCEEEEETTTT-EEEEEECCCSSCEE-----------------------------------------E
T ss_pred -cCCEEEEEeCCCcEEEEeCCCC-CcceEEcCCCCCEE-----------------------------------------E
Confidence 7889999999999999998877 45666666665433 2
Q ss_pred cccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCC
Q 001318 695 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 774 (1101)
Q Consensus 695 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 774 (1101)
+.++++++.+++++.|++|++||+....... ....+|...|.+++|++++ .+++++.|+.+++|+........
T Consensus 330 l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~------~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~ 402 (611)
T 1nr0_A 330 LSSSADGKTLFSADAEGHINSWDISTGISNR------VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDS 402 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEE------CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCT
T ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceee------ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccc
Confidence 4466789999999999999999998643211 1113488999999999876 58899999999999874322110
Q ss_pred CCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEE
Q 001318 775 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 854 (1101)
Q Consensus 775 ~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 854 (1101)
.. ..... ....+.+++++|+|+.++++.++.+++|+ .++ +..+. |...+.+++|
T Consensus 403 ~~-----------------~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~ 456 (611)
T 1nr0_A 403 SK-----------------AVANK-----LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVAL 456 (611)
T ss_dssp TS-----------------CCEEE-----CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEE
T ss_pred cc-----------------eeeee-----cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEE
Confidence 00 00000 23456789999999998888899999999 334 55555 7788999999
Q ss_pred ecCCCcEEEEEeccCeEEEEEeecceE--eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC-cccccceeeec
Q 001318 855 HPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQI 931 (1101)
Q Consensus 855 sp~d~~~lasg~~dg~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~ 931 (1101)
+| |+++||+|+.|++|++||+.++.. +.. .+|...|++|+|+|||++|++++.|++|++|++.+ ++.... ..
T Consensus 457 sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~ 531 (611)
T 1nr0_A 457 SN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NS 531 (611)
T ss_dssp CT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CC
T ss_pred eC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---ee
Confidence 99 999999999999999999987653 334 67999999999999999999999999999999986 332110 01
Q ss_pred CCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCC-CCCeeEEEEcCCCCEEEEEEcCCeEEEE
Q 001318 932 PTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVF 1009 (1101)
Q Consensus 932 ~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~l~~spdg~~l~s~s~dg~v~vw 1009 (1101)
..+|. ..|.+++|+|||++|++ +.|+.|++||+.++.........+| ...|++++|+||++ |++++.|++|++|
T Consensus 532 ~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW 607 (611)
T 1nr0_A 532 WTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFW 607 (611)
T ss_dssp CCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred eeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEE
Confidence 22344 48999999999999999 6899999999988753221123478 89999999999999 9999999999999
Q ss_pred EcC
Q 001318 1010 SAA 1012 (1101)
Q Consensus 1010 d~~ 1012 (1101)
++.
T Consensus 608 ~~~ 610 (611)
T 1nr0_A 608 NVP 610 (611)
T ss_dssp ECC
T ss_pred ecc
Confidence 973
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-61 Score=637.54 Aligned_cols=600 Identities=14% Similarity=0.160 Sum_probs=490.3
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
...+|.+.|++++|||+|++ +++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCC
Confidence 34569999999999999995 89999999999999999987763 77999999999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999998766 57789999999999997555489999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.+++|+ +++.++++++.||+|++||+.+......+........... ........+.+++|+|++..++++
T Consensus 747 ~~~~~s--p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 747 NHCRFS--PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED--------PPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp EEEEEC--SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC----------------CCCCCBCCCCBCTTSSEEEEE
T ss_pred EEEEEe--cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCC--------ccccccceEEEEEECCCCCEEEEE
Confidence 999985 4568999999999999999998766555433221111000 001112356677788888888887
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
+ ++.+.+||+.++..+..+.. .+...+.+++|+|+++++++++.||.|++|++.++ .....+.+|...+.
T Consensus 817 ~-~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~------- 886 (1249)
T 3sfz_A 817 A-KNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVH------- 886 (1249)
T ss_dssp E-TTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEE-------
T ss_pred c-CCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceE-------
Confidence 7 68999999999998887752 33457999999999999999999999999999988 66666666655433
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccc----------
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS---------- 729 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~---------- 729 (1101)
.+.+.+++..+++++.|+.+++|++...........
T Consensus 887 ----------------------------------~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 932 (1249)
T 3sfz_A 887 ----------------------------------GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE 932 (1249)
T ss_dssp ----------------------------------EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEET
T ss_pred ----------------------------------EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcC
Confidence 244567889999999999999999764211100000
Q ss_pred ----------------cc----cCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccC
Q 001318 730 ----------------LR----LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 789 (1101)
Q Consensus 730 ----------------~~----~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~ 789 (1101)
.. .....+...+.+++|+|+++.+++++.+|.|++|++..
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-------------------- 992 (1249)
T 3sfz_A 933 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-------------------- 992 (1249)
T ss_dssp TEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT--------------------
T ss_pred CCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC--------------------
Confidence 00 00011346799999999999999999999999998742
Q ss_pred CCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc
Q 001318 790 PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD 868 (1101)
Q Consensus 790 ~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 868 (1101)
+..... +. +|...|.+++|+|+++++++++ ||.|++||+.+++... +..|...|.+++|++ ++ .+++++.|
T Consensus 993 --~~~~~~-~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~d 1064 (1249)
T 3sfz_A 993 --NRVFSS-GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFD 1064 (1249)
T ss_dssp --TSCEEE-CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESS
T ss_pred --Cceeee-cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECC
Confidence 222111 12 3889999999999999999998 8999999999987764 557899999999999 66 56788999
Q ss_pred CeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEc
Q 001318 869 SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 948 (1101)
Q Consensus 869 g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 948 (1101)
|.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++. .....+|. ..|.+++|+
T Consensus 1065 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~~~~s 1136 (1249)
T 3sfz_A 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRCSAFS 1136 (1249)
T ss_dssp SEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEEEEEC
T ss_pred CcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---CcEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999988653 34445554 489999999
Q ss_pred CCCcEEEE-EeCCeEEEEEcCCceeeeecc-------CCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeec
Q 001318 949 QDQIHFLV-VHETQLAIFETTKLECVKQWV-------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 949 ~dg~~la~-~~d~~v~vwd~~~~~~~~~~~-------~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1020 (1101)
|+|++|++ +.|+.|++||+.+++.+..+. ..+|...|++++|+|||++|++++ |.|++||+.+++.+..+
T Consensus 1137 ~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~ 1214 (1249)
T 3sfz_A 1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTF 1214 (1249)
T ss_dssp SSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeee
Confidence 99999999 578999999999998876651 136889999999999999999885 89999999999988766
Q ss_pred CCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1021 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1021 ~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
. +| ...+. +++|+| |+++|++++.||.|++|++.
T Consensus 1215 ~-------~~-~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1215 Y-------TN-GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp C-------CS-SCCCC--CCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred e-------cc-CCccc--EEEECC-CCCEEEEecCCcEEEEEeec
Confidence 5 22 22244 789999 78999999999999999985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-58 Score=564.35 Aligned_cols=562 Identities=12% Similarity=0.144 Sum_probs=456.9
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCc----ceeEeeeeeeeecCCCCcccccccccCCCCC-eEEEEEec
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP 417 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp 417 (1101)
.|.+.|++++|+|||++ |++++ ++.|+|||+.++ +... .+.+|... |++++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 47899999999999996 77776 799999999987 5554 37899999 99999999
Q ss_pred --CCCeEEEEEcCCeEEEEEccCCc-----eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC----CcEEEEeCCCC
Q 001318 418 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG 486 (1101)
Q Consensus 418 --dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~ 486 (1101)
|+++||+|+.||+|++||+.+++ .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .+
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence 99999999999999999997651 1223346778999999999999999 78888877 6788887 77
Q ss_pred ceEEEecCcccCeEEEeeeecCCcc-EEEEEecCCcEEEEecCCCCceeeecCCCC---ceeEEEEccCCceEEeccccC
Q 001318 487 AKQYIFEGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKR 562 (1101)
Q Consensus 487 ~~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~~~~~~~ 562 (1101)
+.+..+.+|...|.+++|+++ +. ++++++.|+.|++||+.+.+....+..|.. .+.+++|+|++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------- 218 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS---------- 218 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT----------
T ss_pred CcceeeecCCccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC----------
Confidence 888999999999999999654 44 899999999999999988777777666655 55555555540
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC--CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccc
Q 001318 563 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
++++++++.||.|++||+.+++.+..+... .+...|.+++|+ ++++|++++.|+.|++||+.++ +.
T Consensus 219 ----------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~ 286 (615)
T 1pgu_A 219 ----------GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KC 286 (615)
T ss_dssp ----------CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EE
T ss_pred ----------CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cE
Confidence 468999999999999999999998888211 234479999999 9999999999999999999887 55
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
...+..+...... .......+++..+++++.++.+++|++..
T Consensus 287 ~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 287 VQKWTLDKQQLGN--------------------------------------QQVGVVATGNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp EEEEECCTTCGGG--------------------------------------CEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred EEEEcCCCCcccC--------------------------------------ceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence 5555433211000 00011123678999999999999999886
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
..... .+ .+|...|.+++| |+ +++++.||.|++|++. . +.
T Consensus 329 ~~~~~---~~----~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~----~~ 368 (615)
T 1pgu_A 329 DEVLK---TI----SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------S----MH 368 (615)
T ss_dssp EEEEE---EE----CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------E----EE
T ss_pred CcEEE---EE----eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------h----hc
Confidence 32211 11 348899999999 88 9999999999999872 0 11
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
..|...|.+++| +++.++++++ |+.|++||+.+++... .+.+++|+| ++.+++++ .++.+++|++.++
T Consensus 369 -~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~ 437 (615)
T 1pgu_A 369 -QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTG 437 (615)
T ss_dssp -CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTC
T ss_pred -CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCC
Confidence 238899999999 6677788887 9999999998765433 688999999 88888877 8899999999999
Q ss_pred eEeeeecCcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E
Q 001318 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V 957 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~ 957 (1101)
+.+..+. |...+++++|+ +++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|+|++|++ +
T Consensus 438 ~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~ 507 (615)
T 1pgu_A 438 DIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGD 507 (615)
T ss_dssp CEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEE
T ss_pred ceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEcC
Confidence 8888876 88899999999 899999999 9999999998854321 3344444 48999999999999999 5
Q ss_pred eCCeEEEEEcCCceeeeeccCCC-CCCCeeEEEEcC----------CCCEEEEEEcCCeEEEEEcCCc-eeeeecCCCcc
Q 001318 958 HETQLAIFETTKLECVKQWVPRE-SSAPITHATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINPSAY 1025 (1101)
Q Consensus 958 ~d~~v~vwd~~~~~~~~~~~~~~-h~~~i~~l~~sp----------dg~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~ 1025 (1101)
.|+.|++||+.+++.+..+. + |...|++++|+| |+++|++++.||.|++||+.++ +.+..+.
T Consensus 508 ~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---- 581 (615)
T 1pgu_A 508 VMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN---- 581 (615)
T ss_dssp TTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT----
T ss_pred CCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh----
Confidence 88999999999999988765 4 899999999999 9999999999999999999998 6776665
Q ss_pred cCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1026 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1026 ~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+|.. .|. +++|+| |+. |++++.||+|++|++..
T Consensus 582 ---~h~~-~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 582 ---AHKD-GVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ---SSTT-CEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred ---cCcc-ceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 3323 355 899999 667 99999999999999975
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-57 Score=565.29 Aligned_cols=613 Identities=11% Similarity=0.105 Sum_probs=435.1
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
....+|.+.|++++|+|+|+ +||+|+.||+|+|||..+.+... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34568999999999999999 49999999999999998776543 234788999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE---------
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--------- 489 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--------- 489 (1101)
|++|++++.|++|+|||+.+++.+.. +. |...|++++|+|+++ ++++|+.||+|++||+.++++.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~~---~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLTT---VF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEEE---EE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEEE---Ec-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 88999999999999999999887653 43 678999999999999 7999999999999999988764
Q ss_pred --EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCc--eEEeccccCcee
Q 001318 490 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSLG 565 (1101)
Q Consensus 490 --~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~~~~~~~~~~~~ 565 (1101)
..+.+|.+.|.+++|++. ++..+++|+.||.| +||+++.+....+..+...- .+.+. .....++...+.
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~h~~~V~ 215 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPF-----APGGDFSEKTNEKRTPKVI 215 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTT-----CCCSTTCCCTTSCBCCCEE
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCc-----CCCcccccccccccCCCeE
Confidence 234679999999999763 23689999999999 99999877666655441000 00000 000011234678
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-----CCC-----------CCCCcCeEEEcc----CC-CEEEEEe
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-----------GLPASPRIRFNK----DG-CLLAVST 624 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-----------~~~~v~~~~~s~----~~-~~l~~~~ 624 (1101)
+++|+|+|++|++++.||.|++||+++++++.... .+. +...|.+++|++ ++ .+|++|+
T Consensus 216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 88888888999999999999999999998876422 121 233688999964 43 5677776
Q ss_pred CC-----CcEEEEEecCcccc-----------------ccccc-cccccccccCCCCCCcccccchhhhhhhcccccccc
Q 001318 625 ND-----NGIKILATSDGIRL-----------------LRTFE-NLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 681 (1101)
Q Consensus 625 ~d-----g~i~iw~~~~~~~~-----------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1101)
.+ +.+.+|++...... .+.+. .+...+. .+.
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~--------~~~------------------ 349 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIV--------NIL------------------ 349 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEE--------EEE------------------
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceE--------EEE------------------
Confidence 65 37888885311000 00000 0000000 000
Q ss_pred cccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCce
Q 001318 682 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI 761 (1101)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 761 (1101)
.............+...+++++.|+.+++|++..................|...|++++|++...
T Consensus 350 -----~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~---------- 414 (902)
T 2oaj_A 350 -----PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN---------- 414 (902)
T ss_dssp -----ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH----------
T ss_pred -----ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH----------
Confidence 00000000011123456788888999999998543211110000011133567888888865332
Q ss_pred EEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCcee-
Q 001318 762 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM- 839 (1101)
Q Consensus 762 i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~- 839 (1101)
.+|+...... +.. ...+. +|...+.+++|+|++++|++|+ |++|++||+.++...
T Consensus 415 -~~w~~~~~~~-------------------~~~-~~~l~--G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~ 471 (902)
T 2oaj_A 415 -KLWLGALSAA-------------------QNK-DYLLK--GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD 471 (902)
T ss_dssp -HHHHHHHHTT-------------------BCC-CCSCC--CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT
T ss_pred -HHHHHHHhcc-------------------cCC-CCccc--CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC
Confidence 3454321000 000 01122 3777788899999999999999 999999999887432
Q ss_pred -eEe----c-----CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc------------------------------
Q 001318 840 -ATF----M-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------------------------------ 879 (1101)
Q Consensus 840 -~~~----~-----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~------------------------------ 879 (1101)
..+ . +|...|.+++|+| |+++||+|+.||+|+|||+.++
T Consensus 472 ~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (902)
T 2oaj_A 472 NASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL 550 (902)
T ss_dssp TBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSE
T ss_pred CceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccc
Confidence 111 1 7888999999999 9999999999999999999876
Q ss_pred ---------------eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCC-CCCCCCCCCe
Q 001318 880 ---------------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDT 943 (1101)
Q Consensus 880 ---------------~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~ 943 (1101)
+++..+.+|.+.|++|+||||| +||+|+.|++|+|||++++.......+..+. +|. ..|.
T Consensus 551 ~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~ 626 (902)
T 2oaj_A 551 VDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVT 626 (902)
T ss_dssp EECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEE
T ss_pred ccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceE
Confidence 2467888999999999999999 9999999999999999875532211122332 554 4899
Q ss_pred EEEEc-----CCC---cEEEE-EeCCeEEEEEc---CCceeeeeccCC---CCCCCeeEEE-Ec----------------
Q 001318 944 RVQFH-----QDQ---IHFLV-VHETQLAIFET---TKLECVKQWVPR---ESSAPITHAT-FS---------------- 991 (1101)
Q Consensus 944 ~~~~s-----~dg---~~la~-~~d~~v~vwd~---~~~~~~~~~~~~---~h~~~i~~l~-~s---------------- 991 (1101)
+++|+ ||| ++|++ +.|++|++||+ .+|++...+..+ .|.++|.+++ |+
T Consensus 627 sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~ 706 (902)
T 2oaj_A 627 CIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQN 706 (902)
T ss_dssp EEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHG
T ss_pred EEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhc
Confidence 99999 886 88888 68999999999 888887776521 1357888887 76
Q ss_pred ------CCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEE---E------EeCCCCCEEEEEecC
Q 001318 992 ------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI---A------AHPQEPNEFALGLSD 1056 (1101)
Q Consensus 992 ------pdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i---~------~~~~d~~~l~s~~~d 1056 (1101)
+++.+|+++ +..|+||++.+++..++.- +|. ..+. ++ . |++ ++..|++++.|
T Consensus 707 l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-------~~~-~~~~--~v~~~~~~~~~~~~~-~~~~l~~~~~~ 773 (902)
T 2oaj_A 707 LSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-------KYP-LAAT--GLSYISTVEKNNDRK-NLTVIITLEIN 773 (902)
T ss_dssp GGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC-------SSC-EEEE--EEEEEEEECSSSCEE-EEEEEEEEETT
T ss_pred cCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc-------ccc-eeee--EEEEEEecccccccc-CceEEEEEeCC
Confidence 566565554 7899999999999887653 111 1122 33 5 666 67899999999
Q ss_pred CcEEEEeccCCC
Q 001318 1057 GGVHVFEPLESE 1068 (1101)
Q Consensus 1057 g~v~vW~~~~~~ 1068 (1101)
|+|++|++++.+
T Consensus 774 g~i~~~s~p~l~ 785 (902)
T 2oaj_A 774 GHLRVFTIPDFK 785 (902)
T ss_dssp SEEEEEETTTCC
T ss_pred CcEEEEECcchH
Confidence 999999999999
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-57 Score=596.01 Aligned_cols=568 Identities=17% Similarity=0.224 Sum_probs=464.7
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|+||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999988665 5789999999999999999 89999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
|+.+++.+..+.+|...|.+++|++..++.++++|+.||.|++||+.++.....+..|...|.+++|+|++
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~--------- 755 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD--------- 755 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST---------
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC---------
Confidence 99999999999999999999999887777899999999999999999988887777777766666666655
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC-----------CCCCcCeEEEccCCCEEEEEeCCCcEE
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK 630 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~dg~i~ 630 (1101)
+++++++.||.|++||+.+++....+.... ....+.+++|+|+|+.+++++ ++.+.
T Consensus 756 ------------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~ 822 (1249)
T 3sfz_A 756 ------------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL 822 (1249)
T ss_dssp ------------TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred ------------CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence 579999999999999999998877765321 123578999999999999988 68999
Q ss_pred EEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCC
Q 001318 631 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 710 (1101)
Q Consensus 631 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 710 (1101)
+|+..++........+|...+ ....+.+++..+++++.+
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v-----------------------------------------~~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTI-----------------------------------------QYCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCC-----------------------------------------CEEEECSSTTEEEEECSS
T ss_pred EEEecCCCceeEEcCCCCCce-----------------------------------------EEEEEcCCCCEEEEEeCC
Confidence 999988843333222333221 234566788999999999
Q ss_pred CcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCce------------
Q 001318 711 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA------------ 778 (1101)
Q Consensus 711 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------ 778 (1101)
+.+++|++......... .+|...|.+++|+|+++.+++++.|+.+++|++...........
T Consensus 862 g~v~vwd~~~~~~~~~~-------~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 862 YCVELWNIDSRLKVADC-------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp SCEEEEETTTTEEEEEE-------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred CeEEEEEcCCCceeeec-------CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 99999999863322111 34889999999999999999999999999999864322111100
Q ss_pred --eee----ecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEE
Q 001318 779 --TAS----VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF 851 (1101)
Q Consensus 779 --~~~----~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 851 (1101)
... ....++...++..... +...+.+++++|+++++++|+ +|.|++||+.+++....+.+|...|++
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYL------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEE------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred cEEEEecCCcceEEEecCcceEEEc------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 000 0122333333332221 456799999999999999999 899999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeec
Q 001318 852 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 931 (1101)
Q Consensus 852 l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 931 (1101)
++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.|++|++||+.+++. ...
T Consensus 1009 l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~-----~~~ 1080 (1249)
T 3sfz_A 1009 IQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI-----ERD 1080 (1249)
T ss_dssp EEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC-----CEE
T ss_pred EEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce-----eEE
Confidence 99999 9999999999999999999998876 456899999999999975 678899999999999998763 233
Q ss_pred CCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEE
Q 001318 932 PTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 932 ~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
..+|. ..|.+++|+|+|+++++ +.|+.|++||+.+++.+..+. +|...|++++|+|||++|++++.||+|++||
T Consensus 1081 ~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1081 FTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp EECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred EcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 34444 37899999999999999 589999999999999887765 8899999999999999999999999999999
Q ss_pred cCCceeeeecCCCccc--CCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 1011 AANLKLRCRINPSAYL--PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1011 ~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
+.+++.+..+...... ..+| ...+. +++|+| |+.++++++ |.|++||+.+++.
T Consensus 1156 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1156 VSDGQLLHSCAPISVEEGTATH-GGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp SSSSCCCCCCCCCC-------C-CSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred CCCCceEEEecccccccccccc-CceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 9999988765321111 1122 22355 899999 788998885 9999999999873
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-56 Score=539.92 Aligned_cols=548 Identities=12% Similarity=0.155 Sum_probs=450.0
Q ss_pred ccccccCCCCCC----CcCcCCCCCCCCC---cceeecccCCCC-cEEEEEec--CCCeEEEEEecCCcEEEEeCCCc--
Q 001318 311 LPVSFTGHSHSH----SHSQAFSTPEDLP---KTVTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR-- 378 (1101)
Q Consensus 311 ~~v~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~h~~~-v~~~~~sp--dg~~llatg~~dg~i~iwd~~~~-- 378 (1101)
..++|++++... .....+|...... .......+|... |++++|+| +|++ |++|+.||.|+|||+.++
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~dg~v~vw~~~~~~~ 100 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDESGKVIVWGWTFDKE 100 (615)
T ss_dssp CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE-EEEEETTSEEEEEEEEEEGG
T ss_pred eEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE-EEEecCCCEEEEEeCCCCcc
Confidence 555666665422 2244455554221 345555679999 99999999 9995 999999999999999765
Q ss_pred ----ceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcC----CeEEEEEccCCceeeeeeeecc
Q 001318 379 ----ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDA 450 (1101)
Q Consensus 379 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~ 450 (1101)
+.... ..+..|...|.+++|+|+|++|++++.+ +.|++|| +++.+. .+.+
T Consensus 101 ~~~~~~~~~-----------------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~ 158 (615)
T 1pgu_A 101 SNSVEVNVK-----------------SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSG 158 (615)
T ss_dssp GTEEEEEEE-----------------EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCS
T ss_pred ccccccccc-----------------chhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeec
Confidence 21111 1367899999999999999999999988 6888888 444443 5789
Q ss_pred ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc---CeEEEeeeecCC-ccEEEEEecCCcEEEEe
Q 001318 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA---PVYSVCPHHKEN-IQFIFSTALDGKIKAWL 526 (1101)
Q Consensus 451 h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~---~v~~v~~~~~~~-~~~l~s~~~dg~i~~wd 526 (1101)
|...|.+++|+|+++. ++++++.|+.|++||+.+++.+..+.+|.. .|.+++|++ + +++|++++.||.|++||
T Consensus 159 ~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 159 HSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp CSSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEE
T ss_pred CCccEEEEEECCCCCc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCCCeEEEEE
Confidence 9999999999999975 689999999999999999999999999999 999999854 4 68999999999999999
Q ss_pred cCCCCceeee-c---CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC
Q 001318 527 YDNLGSRVDY-E---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 602 (1101)
Q Consensus 527 ~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 602 (1101)
+.+++....+ . .+...+.+++|+ + ++++++++.|+.|++||+.+++.+..+..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---------------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-D---------------------SQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-S---------------------SSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-C---------------------CCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 9988777766 4 566666666655 4 457999999999999999999999888765
Q ss_pred CC--CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccc
Q 001318 603 GG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 680 (1101)
Q Consensus 603 ~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1101)
.. ...+.++.|+ +++++++++.||.|++||+.++ +.+..+.+|...+..
T Consensus 294 ~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~--------------------------- 344 (615)
T 1pgu_A 294 KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITA--------------------------- 344 (615)
T ss_dssp TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEE---------------------------
T ss_pred CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEE---------------------------
Confidence 31 1346677775 8999999999999999999887 666666666554331
Q ss_pred ccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCc
Q 001318 681 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 760 (1101)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 760 (1101)
+.+ ++ +++++.|+.+++|++.. +. ..|...|.+++| +++..+++++.|+
T Consensus 345 --------------~~~-~~---l~~~~~dg~i~~w~~~~---------~~---~~~~~~v~~~~~-~~~~~l~~~~~d~ 393 (615)
T 1pgu_A 345 --------------LTV-NP---LISGSYDGRIMEWSSSS---------MH---QDHSNLIVSLDN-SKAQEYSSISWDD 393 (615)
T ss_dssp --------------EET-TT---TEEEETTSCEEETTTTE---------EE---CCCCSCEEEEEC-CSTTCCEEEETTT
T ss_pred --------------EEe-cC---cEEECCCCeEEEEEchh---------hc---CcccCceEEEEE-CCCcEEEEEeCCC
Confidence 222 33 89999999999999871 11 348899999999 6678899999999
Q ss_pred eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceee
Q 001318 761 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA 840 (1101)
Q Consensus 761 ~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~ 840 (1101)
.+++|++..... ...+.+++++|++.+++++.++.+.+|++.+++.+.
T Consensus 394 ~i~~~~~~~~~~--------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (615)
T 1pgu_A 394 TLKVNGITKHEF--------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 441 (615)
T ss_dssp EEEETTEEEEEC--------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CEEEEEcccCcc--------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence 999998743211 125788999999999998888999999999999988
Q ss_pred EecCCCCCeEEEEEecCCCcEEEEEec-cCeEEEEEeecceEe-eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 841 TFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 841 ~~~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~-~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
.+. +...+.+++|+ +++|++++. ||.|++||+.+++.. ..+.+|...|++++|+||+++|++++.|+.|++||+
T Consensus 442 ~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 517 (615)
T 1pgu_A 442 SVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL 517 (615)
T ss_dssp EEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ecc-cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeC
Confidence 887 78899999998 679999999 999999999988766 778899999999999999999999999999999999
Q ss_pred CCcccccceeeecCCC-CCCCCCCCeEEEEcC----------CCcEEEE-EeCCeEEEEEcCCc-eeeeeccCCCCCCCe
Q 001318 919 DGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ----------DQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPI 985 (1101)
Q Consensus 919 ~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~----------dg~~la~-~~d~~v~vwd~~~~-~~~~~~~~~~h~~~i 985 (1101)
.+++. +....+ |. ..|.+++|+| ++++|++ +.|+.|++||+.++ +.+..+. +|...|
T Consensus 518 ~~~~~-----~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v 587 (615)
T 1pgu_A 518 QSREV-----KTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGV 587 (615)
T ss_dssp TTTEE-----EECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCE
T ss_pred CCCcc-----eeEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccce
Confidence 98653 333343 43 4899999999 9999999 57999999999998 6776665 889999
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 986 THATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 986 ~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
++++|+||++ |++++.||+|++|++.+
T Consensus 588 ~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 588 NNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999999 99999999999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-53 Score=530.52 Aligned_cols=634 Identities=10% Similarity=0.032 Sum_probs=435.3
Q ss_pred CCcccccCCcccccccccCCCCCC-----CcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEE
Q 001318 299 GISDEINLPVNVLPVSFTGHSHSH-----SHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 373 (1101)
Q Consensus 299 ~~~~~v~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iw 373 (1101)
||.+.| +.++|++++... ...+.+|... .......+.|...|++++|+| |+ +|++++.|++|+||
T Consensus 15 gh~~~V------~~lafspdg~~lAsgs~Dg~I~lw~~~--~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 15 GMSSKP------IAAAFDFTQNLLAIATVTGEVHIYGQQ--QVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVL 84 (902)
T ss_dssp ECSSCE------EEEEEETTTTEEEEEETTSEEEEECST--TCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEE
T ss_pred CCCCCc------EEEEECCCCCEEEEEeCCCEEEEEeCC--CcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEE
Confidence 888888 999999987632 2234445433 334455567899999999999 88 59999999999999
Q ss_pred eCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeee--------
Q 001318 374 EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH-------- 445 (1101)
Q Consensus 374 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~-------- 445 (1101)
|+.+++.+.. +. |.+.|++++|+|++++|++|+.||+|++||+.+++.....
T Consensus 85 d~~~~~~~~~-------------------~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~ 144 (902)
T 2oaj_A 85 SLYSQKVLTT-------------------VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSS 144 (902)
T ss_dssp ETTTCSEEEE-------------------EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHH
T ss_pred ECCCCcEEEE-------------------Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccc
Confidence 9999887653 32 6678999999999999999999999999999988653110
Q ss_pred eeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc------------------ccCeEEEeeeec
Q 001318 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH------------------EAPVYSVCPHHK 507 (1101)
Q Consensus 446 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h------------------~~~v~~v~~~~~ 507 (1101)
..+.+|.+.|.+++|+|++.. .+++|+.|+.| +||+++++++..+.+| ...|++++|+
T Consensus 145 ~~~~~h~~~V~sl~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs-- 220 (902)
T 2oaj_A 145 FFPAARLSPIVSIQWNPRDIG-TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-- 220 (902)
T ss_dssp TCSSSCCCCCCEEEEETTEEE-EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC--
T ss_pred cccccCCCCeEEEEEccCCCC-EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc--
Confidence 235789999999999997543 68899999999 9999999999888766 5779999985
Q ss_pred CCccEEEEEecCCcEEEEecCCCCceee--ec---CCCCceeEEEEccCCceEEeccccCceeEEEEc----CCC-CEEE
Q 001318 508 ENIQFIFSTALDGKIKAWLYDNLGSRVD--YE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD----TTK-NRFL 577 (1101)
Q Consensus 508 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~---~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~----~~~-~~l~ 577 (1101)
++|.+|++++.||+|++||+++++.... +. .+... . ..+.+. -.....+..++|+ |++ ..++
T Consensus 221 pdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~-~---~~~~~~----~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 221 PNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ-P---DYIRDS----STNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp TTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC-T---TCCCCC----SSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC-C---cCCCCC----ccccCCeeEEEEEecCCCCCCEEEE
Confidence 5578999999999999999988765442 11 11100 0 000000 0011234455553 332 3566
Q ss_pred EEeCC-----CcEEEEECC------------------CCceeEEEcCCCCCCCcCeEEEcc----------CCCEEEEEe
Q 001318 578 AAGDD-----FSIKFWDMD------------------SVQLLTSIDADGGLPASPRIRFNK----------DGCLLAVST 624 (1101)
Q Consensus 578 ~~~~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~ 624 (1101)
+|+.| ..+.+|++. +.+....+.. .+...|.++.+.+ ++..+++++
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s 371 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLIL 371 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec-CCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence 66655 378899852 2233444432 1223577777755 345889999
Q ss_pred CCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccce
Q 001318 625 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 704 (1101)
Q Consensus 625 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 704 (1101)
.||.|++|++.++.........+... . .. . +....+
T Consensus 372 ~dg~l~~~~~~~g~~~~~~~~~~~~l-~---------~~----------------------------~------~~v~~~ 407 (902)
T 2oaj_A 372 GNGEIETMLYPSGIFTDKASLFPQNL-S---------WL----------------------------R------PLATTS 407 (902)
T ss_dssp TTSCEEEEETTTCCEECCGGGSCGGG-T---------TB----------------------------T------TBEEEE
T ss_pred CCCcEEEEECCCCCcccccccCCCcc-c---------cc----------------------------C------CCeeEE
Confidence 99999999997663222211111000 0 00 0 000000
Q ss_pred eeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecC
Q 001318 705 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 784 (1101)
Q Consensus 705 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 784 (1101)
.. .+...++|+.......... .+..+|...+.+++|+|+++.|++++.|++|++||+..+.....
T Consensus 408 ~~--s~~~~~~w~~~~~~~~~~~----~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~--------- 472 (902)
T 2oaj_A 408 MA--ASVPNKLWLGALSAAQNKD----YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN--------- 472 (902)
T ss_dssp EE--EEEEHHHHHHHHHTTBCCC----CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------
T ss_pred EE--EEcCHHHHHHHHhcccCCC----CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------
Confidence 00 0112234443211100000 11245777888899999999999999999999999865421100
Q ss_pred ccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCc--------------------------
Q 001318 785 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK-------------------------- 837 (1101)
Q Consensus 785 ~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~-------------------------- 837 (1101)
.++... +.. ..+.+|...|.+++|+||+++||+|+ ||+|+|||+.+++
T Consensus 473 ~~~~~~----l~~-~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (902)
T 2oaj_A 473 ASFEVN----LSR-TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTN 547 (902)
T ss_dssp BCEEEE----HHH-HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSS
T ss_pred ceEEee----chh-hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCc
Confidence 000000 000 00124889999999999999999999 9999999998652
Q ss_pred -------------------eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee-----eec-CcccCe
Q 001318 838 -------------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-----KLK-GHSKRI 892 (1101)
Q Consensus 838 -------------------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-----~l~-~h~~~V 892 (1101)
++.++.+|.+.|++++||| || +||+|+.|++|+|||+.+...+. .+. +|.+.|
T Consensus 548 ~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V 625 (902)
T 2oaj_A 548 GVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACV 625 (902)
T ss_dssp CSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCE
T ss_pred cccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccce
Confidence 3677889999999999999 88 99999999999999998876653 343 899999
Q ss_pred eEEEEc-----CCC---CEEEEEeCCCceEEEeC---CCcccccceeeecCCCCCC--CCCCCeEEE-Ec----------
Q 001318 893 TGLAFS-----HAL---NVLVSSGADSQLCVWSS---DGWEKQKNRFLQIPTGRTP--TAQSDTRVQ-FH---------- 948 (1101)
Q Consensus 893 ~~l~~s-----~dg---~~l~s~s~D~~v~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~s---------- 948 (1101)
++|+|+ ||| ++|++++.|++|++||+ .+|+. ...+.++.. ..+.|..++ |+
T Consensus 626 ~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~-----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~ 700 (902)
T 2oaj_A 626 TCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF-----DVQLMDITNVTSKGPIHKIDAFSKETKSSCLAT 700 (902)
T ss_dssp EEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE-----EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCB
T ss_pred EEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE-----EEEecCceecCCCCceEEEEeEecCCCCcccCC
Confidence 999999 886 89999999999999999 55542 222222210 013556665 65
Q ss_pred ------------CCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEE---E------EcCCCCEEEEEEcCCeEE
Q 001318 949 ------------QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHA---T------FSCDSQLVYACFLDATVC 1007 (1101)
Q Consensus 949 ------------~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l---~------~spdg~~l~s~s~dg~v~ 1007 (1101)
++|..|+++ +..+++|++.++++.+... +|...+.++ . |++++..|++++.||+|+
T Consensus 701 ~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~ 777 (902)
T 2oaj_A 701 IPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLR 777 (902)
T ss_dssp HHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEE
T ss_pred HHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEE
Confidence 555555544 8899999999999987764 455566665 5 788999999999999999
Q ss_pred EEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC
Q 001318 1008 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1056 (1101)
Q Consensus 1008 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d 1056 (1101)
+|++.+++.+..+......-. -......|++ .|++++-.+..
T Consensus 778 ~~s~p~l~~~~~~~~~~~~~~------~~~~~~~~~~-~G~~~~~~~~~ 819 (902)
T 2oaj_A 778 VFTIPDFKEQMSEHIPFPIAA------KYITESSVLR-NGDIAIRVSEF 819 (902)
T ss_dssp EEETTTCCEEEEEECSSCCCH------HHHTTCEECT-TSCEEEECSSS
T ss_pred EEECcchHHHhhccCCccccc------ccccceEEcC-CCCEEEEeChh
Confidence 999999999988773221110 0111456766 56766655433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=469.03 Aligned_cols=466 Identities=17% Similarity=0.215 Sum_probs=374.2
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
..+|.+.|++++|||+|++ ||+|+.||.|+|||+.+++.+.. +.+|.+.|++++|+|+|+
T Consensus 9 ~~~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIARKN 68 (814)
T ss_dssp EEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGT
T ss_pred eecCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeCCCC
Confidence 4469999999999999995 99999999999999999887763 678999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ceEEEecCcccCe
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV 499 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v 499 (1101)
+|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|+.|++||+.++ .....+.+|...|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v 143 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCE
T ss_pred EEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcE
Confidence 99999999999999999988665 5778999999999999999 7999999999999999987 6778889999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcC--CCCEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT--TKNRFL 577 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 577 (1101)
.+++|++. ++..+++++.||.|++||+........+..+. ...+..++|+| ++.+++
T Consensus 144 ~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 144 MCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------------------ERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCC--------------------TTCCCEEEECCSTTCCEEE
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCC--------------------CCCEEEEEEEECCCCCEEE
Confidence 99999651 45799999999999999998766655444332 22444555555 667899
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCC
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 657 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1101)
+++.||.|++||+.+++.+..+..+.. .|.+++|+|++++|++++.||.|++||+.++ .....+.
T Consensus 203 ~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~------------ 267 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN------------ 267 (814)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC------------
T ss_pred EEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee------------
Confidence 999999999999999999998886644 7999999999999999999999999998776 2222211
Q ss_pred CCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccc
Q 001318 658 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 737 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 737 (1101)
.+
T Consensus 268 ------------------------------------------------------------------------------~~ 269 (814)
T 3mkq_A 268 ------------------------------------------------------------------------------VG 269 (814)
T ss_dssp ------------------------------------------------------------------------------CS
T ss_pred ------------------------------------------------------------------------------cC
Confidence 14
Q ss_pred ccceEEEEEcCCCceE-EeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 738 ATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
...+.+++|+|++..+ ++++.++.+.+|++. .....+.++|+
T Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~ 312 (814)
T 3mkq_A 270 LERSWCIATHPTGRKNYIASGFDNGFTVLSLG-------------------------------------NDEPTLSLDPV 312 (814)
T ss_dssp SSSEEEEEECTTCGGGEEEEEETTEEEEEECS-------------------------------------CCSCCEEECSS
T ss_pred CCcEEEEEEccCCCceEEEEEeCCCEEEEEcC-------------------------------------CCCceeEECCC
Confidence 5678999999998753 666667778888752 12335778889
Q ss_pred CCEEEEEe-CC---eEE------EEECCCCcee----eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 817 DSYVMSAS-GG---KIS------LFNMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 817 g~~la~~s-dg---~i~------vwd~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
|+.+++++ +. .+. .|++..+... ..+..+...+.+++|+| ++++|++++ ||.+.+|++.....
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~- 389 (814)
T 3mkq_A 313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRN- 389 (814)
T ss_dssp SEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEE-
T ss_pred CCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECccccc-
Confidence 98888876 32 122 2333333322 33455677899999999 999999988 89999999765432
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC---cEEEE-Ee
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---IHFLV-VH 958 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg---~~la~-~~ 958 (1101)
.+.+.|.+++|+|||++|++++.|++|++|+.-.+ +. ..+..++|+|+| .+|++ +.
T Consensus 390 ----~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~-------------~~---~~v~~~~~s~dg~~~~~l~~~~~ 449 (814)
T 3mkq_A 390 ----KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKE-------------VT---SWSVPMHSAIDRLFSGALLGVKS 449 (814)
T ss_dssp ----EEEEECSEEEECTTSSCEEEECTTCCEEEEETTEE-------------CT---TCCCCCSSCCCEEECSSSEEEEE
T ss_pred ----cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCC-------------cc---ceEEcCCcCccceecceEEEEec
Confidence 24567899999999999999999999999964321 11 256788999998 45555 79
Q ss_pred CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEE------EcCCeEEEEE
Q 001318 959 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC------FLDATVCVFS 1010 (1101)
Q Consensus 959 d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~------s~dg~v~vwd 1010 (1101)
|+.|++||+.+++.+..+. .|.. .++|+|||++|+++ +.++.+.+|.
T Consensus 450 d~~v~~~d~~~~~~~~~~~--~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 450 DGFVYFFDWDNGTLVRRID--VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp TTEEEEECTTTCCEEEEES--SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred CCEEEEEECCcCcEEEEEe--cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 9999999999999988876 3333 99999999999999 6665555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=452.54 Aligned_cols=467 Identities=16% Similarity=0.208 Sum_probs=374.1
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.+|.+.|++++|||||++||+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 478999999999999999999999999999999999987665 5778999999999999999 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFR 560 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 560 (1101)
|+.+++.+..+.+|.+.|.+++|+ +++.+|++++.||.|++||+.+. .....+..|...+.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--------- 151 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--------- 151 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT---------
T ss_pred ECCCCcEEEEEecCCCCEEEEEEe--CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC---------
Confidence 999999999999999999999985 45679999999999999999876 344455556665665555551
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc--CCCEEEEEeCCCcEEEEEecCcc
Q 001318 561 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 561 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
+++.+++++.||.|++||+.++.....+..+. ...+.+++|+| ++.+|++++.||.|++||+.++
T Consensus 152 -----------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~- 218 (814)
T 3mkq_A 152 -----------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK- 218 (814)
T ss_dssp -----------EEEEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-
T ss_pred -----------CCCEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-
Confidence 34579999999999999999988887776543 24689999999 9999999999999999998766
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
.....+.
T Consensus 219 ~~~~~~~------------------------------------------------------------------------- 225 (814)
T 3mkq_A 219 SCVATLE------------------------------------------------------------------------- 225 (814)
T ss_dssp EEEEEEE-------------------------------------------------------------------------
T ss_pred cEEEEEc-------------------------------------------------------------------------
Confidence 2222221
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
+|...|.+++|+|++..+++++.||.|++|++.. +.....
T Consensus 226 -----------------~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~----------------------~~~~~~- 265 (814)
T 3mkq_A 226 -----------------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----------------------YKVEKT- 265 (814)
T ss_dssp -----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT----------------------CSEEEE-
T ss_pred -----------------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------CcEEEE-
Confidence 2567899999999999999999999999998742 221111
Q ss_pred cCCCCCCCCeeEEEEecCCC--EEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCe---EE-
Q 001318 799 VTDSNPEEAVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQ- 872 (1101)
Q Consensus 799 ~~~~~~~~~i~~~~~s~dg~--~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~---v~- 872 (1101)
+. .+...+.+++|+|++. +++++.++.+.+|++.... ..++++| +++++++++.+.. +.
T Consensus 266 ~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~g~~~~~~~~~~~~~~~~~ 330 (814)
T 3mkq_A 266 LN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE------------PTLSLDP-VGKLVWSGGKNAAASDIFT 330 (814)
T ss_dssp EC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS------------CCEEECS-SSEEEEECCTTSCTTCEEE
T ss_pred ee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC------------ceeEECC-CCCEEEECcccccceeeee
Confidence 11 2677899999999998 5777779999999976532 3467788 8888988776552 11
Q ss_pred -----EEEeecceEe----eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCe
Q 001318 873 -----IYNVRVDEVK----SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 943 (1101)
Q Consensus 873 -----vwd~~~~~~~----~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 943 (1101)
.|++..+... ..+..|...+.+++|+|+|++|++++ |+.+.+|++....... .+.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-------------~~~i~ 396 (814)
T 3mkq_A 331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-------------FGKCQ 396 (814)
T ss_dssp EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-------------EEECS
T ss_pred eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-------------CCceE
Confidence 1233333222 33456777899999999999999998 8999999986533211 13678
Q ss_pred EEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCC---CEEEEEEcCCeEEEEEcCCceeeee
Q 001318 944 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 944 ~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg---~~l~s~s~dg~v~vwd~~~~~~~~~ 1019 (1101)
+++|+|+|++++++ .++.|++|+.. .+|...+.+++|+||| ++|++++.|+.|++||+.+++.+..
T Consensus 397 ~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~ 466 (814)
T 3mkq_A 397 DFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRR 466 (814)
T ss_dssp EEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEE
T ss_pred EEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEE
Confidence 99999999999995 78999999632 2567789999999999 6889999999999999999999988
Q ss_pred cCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE------ecCCcEEEEe
Q 001318 1020 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG------LSDGGVHVFE 1063 (1101)
Q Consensus 1020 ~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~------~~dg~v~vW~ 1063 (1101)
+. +| .. .+.|+| |+++|+++ +.++.+.+|.
T Consensus 467 ~~-------~~----~~--~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 467 ID-------VN----AK--DVIWSD-NGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp ES-------SC----EE--EEEECT-TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred Ee-------cC----CC--EEEEcC-CCCEEEEEEcCcccCCceEEEEEe
Confidence 77 21 11 699999 78999999 6666555554
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-40 Score=374.66 Aligned_cols=306 Identities=16% Similarity=0.313 Sum_probs=262.8
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+.+|.+.|++++|+|++++ +++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|+
T Consensus 104 l~gh~~~V~~~~~~p~~~~-l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGK 163 (410)
T ss_dssp EECCSSCEEEEEECSSSSE-EEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSS
T ss_pred ecccCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCC
Confidence 5579999999999999994 9999999999999999988765 3789999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 500 (1101)
+|++|+.|++|++||+.+++++. ++.+|...|.+++|+|+++ +|++|+.|++|++||+.++.++.++.+|...|.
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~ 238 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE
Confidence 99999999999999999987665 6889999999999999999 799999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
++++ .+++.+|++|+.|++|++||+.+......+..|...|.+++|+|++......... ..........+.++++|+
T Consensus 239 ~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 239 MVRP--NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp EEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEEE
T ss_pred EEEE--CCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCEEEEEe
Confidence 9987 4567899999999999999999998888999999999999999986521111110 111122334578999999
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCC
Q 001318 581 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 660 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1101)
.|+.|++||+.+++++..+.+|.. .|.+++|+|++++|++++.||.|++||+.++ +.+..+
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~---------------- 376 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTL---------------- 376 (410)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEE----------------
T ss_pred CCCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEE----------------
Confidence 999999999999999999986644 7999999999999999999999999998766 332222
Q ss_pred cccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccc
Q 001318 661 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 740 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1101)
.+|...
T Consensus 377 --------------------------------------------------------------------------~~h~~~ 382 (410)
T 1vyh_C 377 --------------------------------------------------------------------------NAHEHF 382 (410)
T ss_dssp --------------------------------------------------------------------------ECCSSC
T ss_pred --------------------------------------------------------------------------cCCCCc
Confidence 126778
Q ss_pred eEEEEEcCCCceEEeeecCceEEeeec
Q 001318 741 ISRLIFTNSGNAILALASNAIHLLWKW 767 (1101)
Q Consensus 741 i~~l~~s~~g~~l~~~~~dg~i~iw~~ 767 (1101)
|.+++|+|++.+|++++.|+.|++|++
T Consensus 383 v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 383 VTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999999985
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=371.37 Aligned_cols=306 Identities=17% Similarity=0.313 Sum_probs=260.1
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEe
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 526 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd 526 (1101)
.+.+|.++|++++|+|++. +|++|+.|++|+|||+.+++.+.++.+|.+.|.+++|+ +++.+|++|+.|++|++||
T Consensus 103 ~l~gh~~~V~~~~~~p~~~--~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~--~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD--HSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEEC--TTSSEEEEEETTSCCCEEE
T ss_pred eecccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEc--CCCCEEEEEeCCCeEEEEe
Confidence 4779999999999999999 89999999999999999999999999999999999985 5568999999999999999
Q ss_pred cCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 001318 527 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 606 (1101)
Q Consensus 527 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 606 (1101)
+.+.+....+..|...|.+++|+|++ +++++++.|++|++||+.++.++..+..|..
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~---------------------~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~-- 235 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG---------------------DHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-- 235 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS---------------------SEEEEEETTSEEEEEETTTCCEEEEEECCSS--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC---------------------CEEEEEeCCCeEEEEECCCCcEEEEEeCCCc--
Confidence 99887777777777666666665554 5799999999999999999999999986644
Q ss_pred CcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccccc
Q 001318 607 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 686 (1101)
Q Consensus 607 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1101)
.|.++.|+|++++|++++.|+.|++||+.++ .....+
T Consensus 236 ~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-~~~~~~------------------------------------------ 272 (410)
T 1vyh_C 236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAEL------------------------------------------ 272 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEE------------------------------------------
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeEe------------------------------------------
Confidence 7999999999999999999999999998776 222222
Q ss_pred ccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeee
Q 001318 687 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 687 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
.+|...|.+++|+|++.........+
T Consensus 273 ------------------------------------------------~~h~~~v~~~~~~~~~~~~~~~~~~~------ 298 (410)
T 1vyh_C 273 ------------------------------------------------REHRHVVECISWAPESSYSSISEATG------ 298 (410)
T ss_dssp ------------------------------------------------CCCSSCEEEEEECCSCGGGGGGGCCS------
T ss_pred ------------------------------------------------cCCCceEEEEEEcCcccccchhhhcc------
Confidence 12667888999998875321110000
Q ss_pred ccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC
Q 001318 767 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 845 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~ 845 (1101)
........++.+|++|+ |+.|++||+.++.++.++.+|
T Consensus 299 -----------------------------------------~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h 337 (410)
T 1vyh_C 299 -----------------------------------------SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337 (410)
T ss_dssp -----------------------------------------CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred -----------------------------------------ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence 01112234678999999 999999999999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
...|++++|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.|++|++|++
T Consensus 338 ~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 338 DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999986
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=355.83 Aligned_cols=290 Identities=19% Similarity=0.310 Sum_probs=251.3
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.+.+|.+.|++++|+|||++ |++|+.||+|+|||+.+++.+.. +..|...|.+++|+|+|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~ 109 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRL-LLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYAPSG 109 (340)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEECTTS
T ss_pred eecCCCCceEEEEECCCCCE-EEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEECCCC
Confidence 34569999999999999995 99999999999999999887663 67889999999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCce-eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|.+.
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~ 186 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGD 186 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCc
Confidence 9999999999999999987642 233446789999999999998875 889999999999999999999999999999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|.+++|+ +++.++++|+.|++|++||++++.....+..|...|.+++|+|++ ++|++
T Consensus 187 v~~~~~~--~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---------------------~~l~s 243 (340)
T 1got_B 187 VMSLSLA--PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG---------------------NAFAT 243 (340)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS---------------------SEEEE
T ss_pred eEEEEEC--CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC---------------------CEEEE
Confidence 9999985 456899999999999999999888777777777666666655554 58999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCC
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 658 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1101)
++.||.|++||+++++.+..+........|.+++|+|+|++|++|+.||.|++||+.++ .....+
T Consensus 244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~-------------- 308 (340)
T 1got_B 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL-------------- 308 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE--------------
T ss_pred EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEe--------------
Confidence 99999999999999998888875555557899999999999999999999999998766 222221
Q ss_pred CCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccc
Q 001318 659 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
.+|.
T Consensus 309 ----------------------------------------------------------------------------~~h~ 312 (340)
T 1got_B 309 ----------------------------------------------------------------------------AGHD 312 (340)
T ss_dssp ----------------------------------------------------------------------------ECCS
T ss_pred ----------------------------------------------------------------------------ecCC
Confidence 1277
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeee
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
..|.+++|+|+|..|++++.|+.|++||
T Consensus 313 ~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 8899999999999999999999999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=350.96 Aligned_cols=287 Identities=21% Similarity=0.325 Sum_probs=247.0
Q ss_pred eeccccCCeeEEEEcCC----CCeEEEEEecCCCcEEEEeCCCCce--EEEecCcccCeEEEeeeecCCccEEEEEecCC
Q 001318 447 EIDAHVGGVNDIAFSHP----NKQLCVITCGDDKTIKVWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 520 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d----~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg 520 (1101)
.+.+|.+.|++++|+++ +. +|+||+.|++|+|||+.+++. ...+.+|...|.+++|+ +++.++++++.|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~--~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~--~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSE--TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS--HTLPIAASSSLDA 102 (321)
T ss_dssp ETTSSSSCEEEEEEC-------C--EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC--SSSSEEEEEETTS
T ss_pred ecccCCCcEEEEEEecCCCCCCC--EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC--CCCCEEEEEeCCC
Confidence 46799999999999985 45 799999999999999987764 45789999999999985 5557999999999
Q ss_pred cEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 001318 521 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 600 (1101)
Q Consensus 521 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1101)
+|++||+.+++....+..+...+.++ +|+|++++|++++.||.|++|++.+++....+.
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~---------------------~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTL---------------------AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCE---------------------EECTTSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEE---------------------EECCCCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence 99999999877766666555544444 455555689999999999999999999888887
Q ss_pred CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccc
Q 001318 601 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 680 (1101)
Q Consensus 601 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1101)
.+.. .+.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 162 ~~~~--~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-~~~~~~~----------------------------------- 203 (321)
T 3ow8_A 162 TRGK--FILSIAYSPDGKYLASGAIDGIINIFDIATG-KLLHTLE----------------------------------- 203 (321)
T ss_dssp CSSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEEC-----------------------------------
T ss_pred CCCc--eEEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEc-----------------------------------
Confidence 6544 6899999999999999999999999998765 2111110
Q ss_pred ccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCc
Q 001318 681 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 760 (1101)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 760 (1101)
T Consensus 204 -------------------------------------------------------------------------------- 203 (321)
T 3ow8_A 204 -------------------------------------------------------------------------------- 203 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCcee
Q 001318 761 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 839 (1101)
Q Consensus 761 ~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~ 839 (1101)
+|...|.+++|+|++++|++++ |+.|++||+.+++..
T Consensus 204 ------------------------------------------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 204 ------------------------------------------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241 (321)
T ss_dssp ------------------------------------------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred ------------------------------------------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee
Confidence 1566788899999999999998 899999999999999
Q ss_pred eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 840 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 840 ~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
.++.+|...|.+++|+| ++++|++|+.||+|+|||+.+++++..+.+|.+.|++++|+|++++|++++.|++|++||..
T Consensus 242 ~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 242 GTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999999999999963
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=356.91 Aligned_cols=293 Identities=17% Similarity=0.274 Sum_probs=253.3
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.+.+|.+.|+|++|+|++++ |++|+.||+|+|||..+++.... +..|...|.+++|+|+|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~sp~g 118 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYAPSG 118 (354)
T ss_dssp EEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEECTTS
T ss_pred EecCCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEECCCC
Confidence 35579999999999999995 99999999999999998877653 56788899999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCce---eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcc
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~---~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+++++.+..+.+|.
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h~ 196 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGHG 196 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCCC
Confidence 9999999999999999875421 122335678999999999999999 79999999999999999999999999999
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
..|.+++|++.+++.+|++|+.||+|++||++++.....+..|...|.+++|+|++ ++|
T Consensus 197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---------------------~~l 255 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG---------------------DAF 255 (354)
T ss_dssp SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------SEE
T ss_pred CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC---------------------CEE
Confidence 99999999887778899999999999999999988877777777766666665555 579
Q ss_pred EEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCC
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 656 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1101)
++++.|++|++||+++++.+..+..+.....+.+++|+|++++|++|+.|+.|++||+.++ ..+..+
T Consensus 256 ~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l------------ 322 (354)
T 2pbi_B 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSIL------------ 322 (354)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEE------------
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-ceEEEE------------
Confidence 9999999999999999988887775555456889999999999999999999999998776 222211
Q ss_pred CCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccc
Q 001318 657 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 736 (1101)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 736 (1101)
.+
T Consensus 323 ------------------------------------------------------------------------------~~ 324 (354)
T 2pbi_B 323 ------------------------------------------------------------------------------FG 324 (354)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------EC
Confidence 12
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeee
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
|...|.+++|+|+|++|++++.|+.|++|+
T Consensus 325 h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 778899999999999999999999999995
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=368.21 Aligned_cols=340 Identities=15% Similarity=0.205 Sum_probs=275.2
Q ss_pred ccCCCCCeEEEEEecCCC-eEEEEEcCCeEEEEEc----cCCce------eeee-eeec------cccCCeeEEEEcCCC
Q 001318 403 VKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSY----HGGDE------VRQH-LEID------AHVGGVNDIAFSHPN 464 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~----~~~~~------~~~~-~~l~------~h~~~V~~~~~s~d~ 464 (1101)
...|.+.|++++|+|+|+ +||+|+.|+.|++||+ .+++. .... ..+. +|.+.|++++|+|++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 345678999999999999 9999999999999999 88772 2211 1122 268899999999999
Q ss_pred CeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCc--
Q 001318 465 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-- 542 (1101)
Q Consensus 465 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-- 542 (1101)
+ +|++++.|+.|++|| .+++.+..+.+|...|.+++|+ +++.+|++++.||.|++||+.+++....+..+...
T Consensus 121 ~--~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 121 N--SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN--KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp S--EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEEC--TTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred C--EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEEC--CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 9 899999999999999 7888999999999999999985 45689999999999999999988777776665543
Q ss_pred -eeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEE
Q 001318 543 -CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 621 (1101)
Q Consensus 543 -v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 621 (1101)
+....+.+++. .+..+.|+++ ..+++++.+|.|++||+.+++.+..+..+. ..|.+++|+|++++|+
T Consensus 196 ~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 196 SINAENHSGDGS---------LGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHH--GPISVLEFNDTNKLLL 263 (425)
T ss_dssp ----------CC---------CBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCS--SCEEEEEEETTTTEEE
T ss_pred ceeeccccCCcc---------eeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCC--CceEEEEECCCCCEEE
Confidence 11111111111 2555666665 358899999999999999999988887554 4799999999999999
Q ss_pred EEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCc
Q 001318 622 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV 701 (1101)
Q Consensus 622 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1101)
+++.||.|++||+.++ +....+
T Consensus 264 ~~~~d~~i~i~d~~~~-~~~~~~--------------------------------------------------------- 285 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNG-NSQNCF--------------------------------------------------------- 285 (425)
T ss_dssp EEETTSCEEEECSSSB-SCSEEE---------------------------------------------------------
T ss_pred EEcCCCEEEEEECCCC-ccceEe---------------------------------------------------------
Confidence 9999999999997654 111000
Q ss_pred cceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeee
Q 001318 702 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS 781 (1101)
Q Consensus 702 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 781 (1101)
T Consensus 286 -------------------------------------------------------------------------------- 285 (425)
T 1r5m_A 286 -------------------------------------------------------------------------------- 285 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCc
Q 001318 782 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 860 (1101)
Q Consensus 782 ~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 860 (1101)
..|...|.+++|+|++ ++++++ |+.|++||+.+++.+..+..|...|.+++|+| +++
T Consensus 286 --------------------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 343 (425)
T 1r5m_A 286 --------------------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQ 343 (425)
T ss_dssp --------------------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSS
T ss_pred --------------------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCC
Confidence 0156678888899988 778877 89999999999999999999999999999999 899
Q ss_pred EEEEEeccCeEEEEEeecce--------------------EeeeecCccc--CeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 861 IIAIGMDDSSIQIYNVRVDE--------------------VKSKLKGHSK--RITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 861 ~lasg~~dg~v~vwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|++++.|+.|++|++
T Consensus 344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 99999999999999999988 8899999977 9999999999999999999999999998
Q ss_pred C
Q 001318 919 D 919 (1101)
Q Consensus 919 ~ 919 (1101)
+
T Consensus 424 ~ 424 (425)
T 1r5m_A 424 P 424 (425)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=349.24 Aligned_cols=287 Identities=18% Similarity=0.289 Sum_probs=247.5
Q ss_pred ccCCCCCeEEEEEecC----CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 403 VKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 6789999999999984 67999999999999999987653 23346889999999999999999 89999999999
Q ss_pred EEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec
Q 001318 479 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 479 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
++||+.+++.+..+..|...+.+++|+ +++++|++++.||.|++||+.+.+....+..+...+.+++|+|
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-------- 174 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-------- 174 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEEC--TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT--------
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEEC--CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC--------
Confidence 999999999999999999999999985 5668999999999999999998877766666655555555554
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
++++|++++.||.|++||+.+++.+..+..+. ..|.+++|+|++++|++++.|+.|++||+.++
T Consensus 175 -------------dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~- 238 (321)
T 3ow8_A 175 -------------DGKYLASGAIDGIINIFDIATGKLLHTLEGHA--MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA- 238 (321)
T ss_dssp -------------TSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCCCEEEECTTSCEEEEECTTSCEEEEETTTC-
T ss_pred -------------CCCEEEEEcCCCeEEEEECCCCcEEEEEcccC--CceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-
Confidence 55689999999999999999999999988654 47999999999999999999999999997654
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
.....+
T Consensus 239 ~~~~~~-------------------------------------------------------------------------- 244 (321)
T 3ow8_A 239 NLAGTL-------------------------------------------------------------------------- 244 (321)
T ss_dssp CEEEEE--------------------------------------------------------------------------
T ss_pred ceeEEE--------------------------------------------------------------------------
Confidence 111000
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
T Consensus 245 -------------------------------------------------------------------------------- 244 (321)
T 3ow8_A 245 -------------------------------------------------------------------------------- 244 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 799 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 799 ~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
.+|...|.+++|+|++++|++++ |++|++||+.+++++.++.+|...|.+++|+| ++++|++++.||.|+|||.
T Consensus 245 ---~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 245 ---SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred ---cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence 01677788999999999999998 89999999999999999999999999999999 8999999999999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=348.99 Aligned_cols=287 Identities=14% Similarity=0.264 Sum_probs=243.0
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
...++.+|.+.|++++|+|+++ +|++|+.|++|+|||+.+++.+..+..|...|.+++|+ +++.+|++|+.|+.|+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~--~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSR--LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA--PSGNYVACGGLDNICS 122 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSS--EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEEC--TTSSEEEEEETTCEEE
T ss_pred hheeecCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEEC--CCCCEEEEEeCCCeEE
Confidence 3446889999999999999999 89999999999999999999999999999999999985 5668999999999999
Q ss_pred EEecCCCCc----eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 001318 524 AWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 599 (1101)
Q Consensus 524 ~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 599 (1101)
+|++.+... ...+..|...+.++.|++++ .+++++.|+.|++||+.+++.+..+
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------------------~l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----------------------QIVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETT----------------------EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCC----------------------cEEEEECCCcEEEEECCCCcEEEEE
Confidence 999987542 22344555555555554443 3899999999999999999999998
Q ss_pred cCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccc
Q 001318 600 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 679 (1101)
Q Consensus 600 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
..|. ..|.+++|+|+++++++|+.|+.|++||+.++ .....+
T Consensus 181 ~~h~--~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-~~~~~~----------------------------------- 222 (340)
T 1got_B 181 TGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQTF----------------------------------- 222 (340)
T ss_dssp CCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEE-----------------------------------
T ss_pred cCCC--CceEEEEECCCCCEEEEEeCCCcEEEEECCCC-eeEEEE-----------------------------------
Confidence 8664 47999999999999999999999999998655 111100
Q ss_pred cccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC
Q 001318 680 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 759 (1101)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 759 (1101)
T Consensus 223 -------------------------------------------------------------------------------- 222 (340)
T 1got_B 223 -------------------------------------------------------------------------------- 222 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce
Q 001318 760 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 838 (1101)
Q Consensus 760 g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 838 (1101)
.+|...|.+++|+|++++|++++ |++|++||+.+++.
T Consensus 223 ------------------------------------------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 223 ------------------------------------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp ------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ------------------------------------------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 01566678888888888888888 78888888888777
Q ss_pred eeEecC--CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEE
Q 001318 839 MATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916 (1101)
Q Consensus 839 ~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iw 916 (1101)
+..+.. +...|++++|+| ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|||.+|+|++.|++|+||
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 766653 234799999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 001318 917 S 917 (1101)
Q Consensus 917 d 917 (1101)
|
T Consensus 340 d 340 (340)
T 1got_B 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=343.41 Aligned_cols=300 Identities=19% Similarity=0.263 Sum_probs=245.1
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+.+|.+.|++++|+|++..+|++|+.|++|++||+.+.......++ ..+.+|...|.+++|+|||+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--------------~~~~~h~~~v~~~~~s~dg~ 78 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--------------EEEECCSSCEEEEEECTTSS
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--------------eEEeCCcccEEEEEECCCCC
Confidence 3469999999999998754799999999999999875433221111 14789999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 500 (1101)
+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||++ +.++..+.+|...|.
T Consensus 79 ~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 79 YALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152 (319)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSCEE
T ss_pred EEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEE
Confidence 99999999999999999998665 5789999999999999999 89999999999999985 667888999999999
Q ss_pred EEeeeecC----CccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 501 SVCPHHKE----NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 501 ~v~~~~~~----~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
+++|.+.. ++.++++++.|+.|++||+.+......+..|...|.+++|+|++ ++|
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g---------------------~~l 211 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG---------------------TLI 211 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS---------------------SEE
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC---------------------CEE
Confidence 99987643 45589999999999999999877776777776666666655555 589
Q ss_pred EEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCC
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 656 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1101)
++++.||.|++||+.+++.+..+..+. .|.+++|+|++.+|++++. +.+++|++..+ .....+..+...
T Consensus 212 ~s~~~dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~-~~~~~~~~~~~~------ 280 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQ-YLVDDLRPEFAG------ 280 (319)
T ss_dssp EEEETTCEEEEEETTTTEEEEEEECCS---CEEEEEECSSSSEEEEEET-TEEEEEEETTE-EEEEEECCCCTT------
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCC---cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcC-eeeeccCccccc------
Confidence 999999999999999999998887543 5999999999999998876 45999998765 222222110000
Q ss_pred CCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccc
Q 001318 657 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 736 (1101)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 736 (1101)
....
T Consensus 281 ----------------------------------------------------------------------------~~~~ 284 (319)
T 3frx_A 281 ----------------------------------------------------------------------------YSKA 284 (319)
T ss_dssp ----------------------------------------------------------------------------CCGG
T ss_pred ----------------------------------------------------------------------------cccC
Confidence 0012
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeecc
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQ 768 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 768 (1101)
+...+.+++|+|+|++|++++.|+.|++|++.
T Consensus 285 ~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp GCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 56678999999999999999999999999974
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=357.29 Aligned_cols=322 Identities=14% Similarity=0.174 Sum_probs=232.6
Q ss_pred EEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc-
Q 001318 349 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS- 427 (1101)
Q Consensus 349 ~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~- 427 (1101)
..+.+.+++. ++.++.+.....|++... ...+|...|++++|||||++||+|+.
T Consensus 9 sg~d~g~~~~--~~~~~g~~~~~~w~~p~~-----------------------~p~~H~~~V~~v~fSpDG~~las~s~d 63 (357)
T 4g56_B 9 SGVDLGTENL--YFQSNGSSKGSAWGRPVT-----------------------APACMEVQIGAVRYRRDGALLLAASSL 63 (357)
T ss_dssp --------------------------------------------------------CCCSEEEEEEECSSSCEEEEEECS
T ss_pred cCCCCCccce--EEecCCCccccccCCCCC-----------------------CcccccCCEEEEEECCCCCEEEEEcCC
Confidence 3444555554 344444577788887543 24579999999999999999999997
Q ss_pred -----CCeEEEEEccCCceeee-eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE----EecCccc
Q 001318 428 -----RHIVQIYSYHGGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEA 497 (1101)
Q Consensus 428 -----d~~i~iwd~~~~~~~~~-~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~ 497 (1101)
|+.|++|+..++..... .....+|...|.+++|+|+++ +++++.|++|+|||+.+++.+. ...+|..
T Consensus 64 ~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 140 (357)
T 4g56_B 64 SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHDD 140 (357)
T ss_dssp SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence 78899999887654321 123457899999999999986 5678889999999999887543 3458999
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
.|++++|+ +++++|++++.|++|++||+.+++....+..|...|.+++|++++. ..++
T Consensus 141 ~V~~v~~s--pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--------------------~~~~ 198 (357)
T 4g56_B 141 IVKTLSVF--SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--------------------TIFL 198 (357)
T ss_dssp CEEEEEEC--SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--------------------SCEE
T ss_pred CEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--------------------ceee
Confidence 99999985 5668999999999999999999888888888888888888887765 4688
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccC-CCEEEEEeCCCcEEEEEecCccccccccccccccccccCC
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 656 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1101)
+++.|+.|++||+++++.+..+....+...+.+++|+|+ +.+|++|+.|+.|++||+.++ +..+.+.
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~----------- 266 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSA----------- 266 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEEC-----------
T ss_pred eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEe-----------
Confidence 999999999999999988877766666667899999996 578999999999999998765 2111110
Q ss_pred CCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccc
Q 001318 657 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 736 (1101)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 736 (1101)
T Consensus 267 -------------------------------------------------------------------------------- 266 (357)
T 4g56_B 267 -------------------------------------------------------------------------------- 266 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
+|...|.+++|+|+
T Consensus 267 ------------------------------------------------------------------~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 267 ------------------------------------------------------------------VHSQNITGLAYSYH 280 (357)
T ss_dssp ------------------------------------------------------------------CCSSCEEEEEECSS
T ss_pred ------------------------------------------------------------------ccceeEEEEEEcCC
Confidence 15566777888877
Q ss_pred C-CEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 817 D-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 817 g-~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
+ ++|++++ |++|+|||+.++++++.+ +|...|++++|+|.++++||+|+.||+|++|++.+.
T Consensus 281 ~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 281 SSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 6 4678887 899999999988877655 699999999999877899999999999999999764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=353.81 Aligned_cols=319 Identities=15% Similarity=0.205 Sum_probs=231.4
Q ss_pred ceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeee
Q 001318 703 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 782 (1101)
Q Consensus 703 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 782 (1101)
.++.++.+.....|++..... ..|...|.+++|+|||++|++++.|. +++||.
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~--------------- 70 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG--------------- 70 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------
T ss_pred eEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------
Confidence 344555567778888763211 23889999999999999999999853 244542
Q ss_pred cCccccCCCccccccc-cCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceee----EecCCCCCeEEEEEecC
Q 001318 783 APQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA----TFMPPPPAATFLAFHPQ 857 (1101)
Q Consensus 783 ~~~lw~~~~g~~~~~~-~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~sp~ 857 (1101)
.+.+|+..++...... ....+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+|
T Consensus 71 ~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 149 (357)
T 4g56_B 71 SIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS- 149 (357)
T ss_dssp EEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-
T ss_pred eEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-
Confidence 2334444444322111 111237888999999999987766669999999998876543 3457899999999999
Q ss_pred CCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCC-EEEEEeCCCceEEEeCCCcccccceeeecCCCCC
Q 001318 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 936 (1101)
Q Consensus 858 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 936 (1101)
++++|++|+.||.|++||+.+++++..+.+|.+.|++++|++++. ++++++.|++|++||+.+++....... ..+
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~---~~~- 225 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF---CAS- 225 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC---TTC-
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee---ccc-
Confidence 999999999999999999999999999999999999999999875 789999999999999988654322111 111
Q ss_pred CCCCCCeEEEEcCCC-cEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCC-CEEEEEEcCCeEEEEEcCC
Q 001318 937 PTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg-~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~s~s~dg~v~vwd~~~ 1013 (1101)
...+.+++|+|++ .+|++ +.|+.|++||+.+++++..+. +|...|++++|+|++ ++|++|+.|++|+|||+.+
T Consensus 226 --~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 226 --DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp --CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred --cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 1468999999985 56777 588999999999999888776 789999999999998 5799999999999999999
Q ss_pred ceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1014 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
++++..+. |.. .|. +++|+|.|+.+|++++.||+|++|++.+..
T Consensus 302 ~~~~~~~~--------H~~-~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 302 SEVFRDLS--------HRD-FVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CEEEEECC--------CSS-CEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CcEeEECC--------CCC-CEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 98876542 323 366 899999888999999999999999997654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=349.72 Aligned_cols=295 Identities=15% Similarity=0.153 Sum_probs=230.0
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcc-ccccccCCCCCCCCeeEEEEec
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~-~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
+...|.+++|+|||++|++++ |+.+++||... .+|+..... ..........+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 567799999999999777665 77889997521 111111100 0000000112567899999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeE----ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
++ .+++|+ ||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+
T Consensus 93 d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 96 556666 99999999998876554 458999999999999 999999999999999999999999999999999
Q ss_pred CeeEEEEcCCC-CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC-CcEEEE-EeCCeEEEEEc
Q 001318 891 RITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFET 967 (1101)
Q Consensus 891 ~V~~l~~s~dg-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~-~~d~~v~vwd~ 967 (1101)
.|++++|++++ .+|++++.|++|++||+.+++....... ..+ ...+.+++|+|+ ++++++ +.|+.|++||+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~---~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAP---GYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----------CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeec---cee---eccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99999999998 4789999999999999998664221111 111 135789999995 567777 57899999999
Q ss_pred CCceeeeeccCCCCCCCeeEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 968 TKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 968 ~~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
.+++++..+. +|...|++++|+||| ++|++|+.|++|+|||+.+++++. +. +|... |. +++|+|++
T Consensus 245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H~~~-V~--~v~~sp~~ 311 (344)
T 4gqb_B 245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AHRDF-VR--DATWSPLN 311 (344)
T ss_dssp CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CCSSC-EE--EEEECSSS
T ss_pred CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CCCCC-EE--EEEEeCCC
Confidence 9999988876 889999999999998 579999999999999999998763 22 44333 66 89999966
Q ss_pred CCEEEEEecCCcEEEEeccCCC
Q 001318 1047 PNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
..+|++++.||+|++|++.+..
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC--
T ss_pred CeEEEEEcCCCeEEEEECCCCC
Confidence 5678899999999999997754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=338.69 Aligned_cols=250 Identities=22% Similarity=0.348 Sum_probs=215.9
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
..+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.+.. +..|...|.+++|+|+++
T Consensus 9 ~~~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFIARKN 68 (304)
T ss_dssp EEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGT
T ss_pred ecCCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEeCCCC
Confidence 3359999999999999995 99999999999999999887653 678999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ceEEEecCcccCe
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV 499 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v 499 (1101)
+|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||++++ .....+.+|...|
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v 143 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred EEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCCcE
Confidence 99999999999999999998665 5789999999999999999 7999999999999999987 4557889999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC-CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
.+++|++. ++.+|++|+.|++|++||+........+.. +...+..+.+.+. +++.++++
T Consensus 144 ~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l~s 203 (304)
T 2ynn_A 144 MCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYMIT 203 (304)
T ss_dssp EEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-------------------TTCCEEEE
T ss_pred EEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-------------------CCCCEEEE
Confidence 99999653 457999999999999999987665544432 2233444443331 25578999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++.|+.|++||+++++++..+.+|.. .|.+++|+|++++|++++.||+|++||..++
T Consensus 204 ~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EcCCCeEEEEeCCCCccceeeCCCCC--CEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999999987654 7999999999999999999999999998876
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=345.84 Aligned_cols=208 Identities=16% Similarity=0.235 Sum_probs=173.7
Q ss_pred cccCCCC-CeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 402 LVKDPGV-SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 402 ~~~~h~~-~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
.+.+|.. .|++++|+|||++||+|+.|++|+|||+.++..........+|...|.+++|+|+++ +|++|+.|++|++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence 4778987 999999999999999999999999999998865444334578999999999999999 8999999999999
Q ss_pred EeCCCC--ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCce---eeecCCCCceeEEEEccCCceE
Q 001318 481 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 481 wd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~ 555 (1101)
||+.++ +++..+.+|...|.+++|+ +++++|++++.|++|++||++..... ..+..|...
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~------------- 152 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD------------- 152 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC-------------
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEe--CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC-------------
Confidence 998877 4578899999999999985 46689999999999999999875432 233444444
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 633 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 633 (1101)
+..++|+|++++|++++.|+.|++||..+++.. ..+.+| ...|.+++|+|+|++|++++.|++|++|+
T Consensus 153 --------v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 153 --------VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp --------EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred --------eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 445555556668999999999999999887644 455544 45799999999999999999999999999
Q ss_pred ecC
Q 001318 634 TSD 636 (1101)
Q Consensus 634 ~~~ 636 (1101)
...
T Consensus 223 ~~~ 225 (345)
T 3fm0_A 223 QYL 225 (345)
T ss_dssp EEC
T ss_pred ccc
Confidence 643
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-39 Score=370.51 Aligned_cols=332 Identities=13% Similarity=0.179 Sum_probs=269.9
Q ss_pred CCeEEEEEecCCC-eEEEE----------EcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC
Q 001318 408 VSVNRVIWSPDGS-LFGVA----------YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 476 (1101)
Q Consensus 408 ~~V~~l~~spdg~-~las~----------~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~ 476 (1101)
..|.+++|+|+|+ +|++| +.|+.|+|||+.+++....... ..|...|.+++|+|+++ +|++++.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~--~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNK--IIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCC--eEEEEccCC
Confidence 4688999999997 99999 8899999999998764322222 35889999999999999 799999999
Q ss_pred cEEEEeCCC----CceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC------ceeee---cCCCCce
Q 001318 477 TIKVWDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG------SRVDY---EAPGRWC 543 (1101)
Q Consensus 477 ~i~iwd~~~----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~------~~~~~---~~~~~~v 543 (1101)
.|++||+.+ .+.+..+.+|...|.+++|+++ ++.+|++++.||.|++||+.+.. ....+ ..+...+
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 999999988 4588899999999999999654 25799999999999999998876 22222 3344445
Q ss_pred eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC----CCCcCeEEEccCC-C
Q 001318 544 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDG-C 618 (1101)
Q Consensus 544 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~-~ 618 (1101)
.+++|+|++ +.++++++.|+.|++||+++++.+..+..+.. ...+.+++|+|++ .
T Consensus 169 ~~~~~~~~~--------------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 169 ISLAWNQSL--------------------AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp CEEEECSSC--------------------TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred eEEEeCCCC--------------------CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 555554442 46899999999999999999999988876531 4579999999987 6
Q ss_pred EEEEEeCCC---cEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCcc
Q 001318 619 LLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 695 (1101)
Q Consensus 619 ~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1101)
++++++.|+ .|++||+.++......+
T Consensus 229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~~--------------------------------------------------- 257 (416)
T 2pm9_A 229 RVATATGSDNDPSILIWDLRNANTPLQTL--------------------------------------------------- 257 (416)
T ss_dssp EEEEEECCSSSCCCCEEETTSTTSCSBCC---------------------------------------------------
T ss_pred EEEEEECCCCCceEEEEeCCCCCCCcEEe---------------------------------------------------
Confidence 999999998 99999986641111100
Q ss_pred ccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCC
Q 001318 696 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 775 (1101)
Q Consensus 696 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 775 (1101)
T Consensus 258 -------------------------------------------------------------------------------- 257 (416)
T 2pm9_A 258 -------------------------------------------------------------------------------- 257 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEE
Q 001318 776 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA 853 (1101)
Q Consensus 776 ~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 853 (1101)
. .+|...|.+++|+| ++++|++++ |+.|++||+.+++.+..+.+|...|.+++
T Consensus 258 ------------------------~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~ 312 (416)
T 2pm9_A 258 ------------------------N-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK 312 (416)
T ss_dssp ------------------------C-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE
T ss_pred ------------------------e-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE
Confidence 0 01566788888888 888888888 89999999999999999999999999999
Q ss_pred EecCCC-cEEEEEeccCeEEEEEeecceEeeeec-----------------------------------CcccCeeEEEE
Q 001318 854 FHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLK-----------------------------------GHSKRITGLAF 897 (1101)
Q Consensus 854 ~sp~d~-~~lasg~~dg~v~vwd~~~~~~~~~l~-----------------------------------~h~~~V~~l~~ 897 (1101)
|+| ++ ++|++++.||.|+|||+.+++...... .|..++.+++|
T Consensus 313 ~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 313 FAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW 391 (416)
T ss_dssp ECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred ECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence 999 66 899999999999999998765433221 16778889999
Q ss_pred cCCCCEEEEEeCCCceEEEeCCC
Q 001318 898 SHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 898 s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
+|||++|++++.|++|+||++.+
T Consensus 392 s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 392 AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ETTTEEECBCTTSSCBCCBCCCC
T ss_pred eeCCeEEEEeCCCCeEEEEEecc
Confidence 99999999999999999999986
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=337.37 Aligned_cols=214 Identities=19% Similarity=0.294 Sum_probs=184.1
Q ss_pred cccCCCCCeEEEEEecCC-CeEEEEEcCCeEEEEEccCCce--eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 402 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~--~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
.+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+... -.....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 488999999999999965 8999999999999999875322 223456889999999999999999 89999999999
Q ss_pred EEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec
Q 001318 479 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 479 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
++||+.+++.+..+.+|...|.+++|+ +++.+|++++.|++|++||++. .....+..|...+.++.+.|.+.
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~----- 161 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDID--KKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK----- 161 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEC--TTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-------
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC-----
Confidence 999999999999999999999999985 5568999999999999999974 56667778888888888887654
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..+++..+++++.|+.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 162 ----------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 162 ----------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN--SNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp --------------CCEEEEEETTSCEEEEETTTTEEEEEECCCC--SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ----------CCCCccEEEEEeCCCEEEEEECCcchhheeecCCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 23345689999999999999999999888887654 47999999999999999999999999998765
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=336.86 Aligned_cols=289 Identities=19% Similarity=0.268 Sum_probs=245.0
Q ss_pred eeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEE
Q 001318 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525 (1101)
Q Consensus 446 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~w 525 (1101)
.++.+|.+.|.+++|+|+++ +|++++.|++|++||+.++..+..+.+|..+|.+++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA--RKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG--GGTEEEEEETTSEEEEE
T ss_pred EeecCCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC--CCCEEEEECCCCEEEEE
Confidence 36889999999999999999 899999999999999999999999999999999999864 55799999999999999
Q ss_pred ecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCC
Q 001318 526 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGG 604 (1101)
Q Consensus 526 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~ 604 (1101)
|+.+++....+..|...|.+++|+|++ +++++++.|++|++||++++ .....+..|.
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~---------------------~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~- 140 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTK---------------------PYVLSGSDDLTVKLWNWENNWALEQTFEGHE- 140 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS---------------------SEEEEEETTSCEEEEEGGGTTEEEEEECCCC-
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCC---------------------CEEEEECCCCeEEEEECCCCcchhhhhcccC-
Confidence 999988888888877777766666655 57999999999999999887 4455666554
Q ss_pred CCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccc
Q 001318 605 LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 683 (1101)
Q Consensus 605 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1101)
..|.+++|+| ++.+|++|+.|++|++||+.++..... +.
T Consensus 141 -~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~-~~-------------------------------------- 180 (304)
T 2ynn_A 141 -HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT-LT-------------------------------------- 180 (304)
T ss_dssp -SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEE-EE--------------------------------------
T ss_pred -CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccce-ec--------------------------------------
Confidence 4799999999 689999999999999999765411000 00
Q ss_pred cccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEE
Q 001318 684 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 763 (1101)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 763 (1101)
T Consensus 181 -------------------------------------------------------------------------------- 180 (304)
T 2ynn_A 181 -------------------------------------------------------------------------------- 180 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec--CCCEEEEEe-CCeEEEEECCCCceee
Q 001318 764 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMA 840 (1101)
Q Consensus 764 iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~--dg~~la~~s-dg~i~vwd~~~~~~~~ 840 (1101)
.++...+..++++| ++.+|++++ |++|++||+.+++++.
T Consensus 181 --------------------------------------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~ 222 (304)
T 2ynn_A 181 --------------------------------------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (304)
T ss_dssp --------------------------------------CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred --------------------------------------cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence 00334455566654 677899998 8999999999999999
Q ss_pred EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCC--EEEEEeCCCceEEEeC
Q 001318 841 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VLVSSGADSQLCVWSS 918 (1101)
Q Consensus 841 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~--~l~s~s~D~~v~iwd~ 918 (1101)
++.+|...|.+++|+| ++.+|++|+.||+|++||+.+++++..+..|...+++++|+|++. ++++++.|+ +.+|++
T Consensus 223 ~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 223 TLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred eeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 9999999999999999 899999999999999999999999999999999999999999875 577777665 888887
Q ss_pred CC
Q 001318 919 DG 920 (1101)
Q Consensus 919 ~~ 920 (1101)
..
T Consensus 301 ~~ 302 (304)
T 2ynn_A 301 GN 302 (304)
T ss_dssp C-
T ss_pred cc
Confidence 65
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=357.06 Aligned_cols=306 Identities=17% Similarity=0.279 Sum_probs=247.8
Q ss_pred EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCc
Q 001318 431 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 510 (1101)
Q Consensus 431 i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 510 (1101)
+..|+.....+. .++.+|.+.|++++|+|+++ +|++|+.|++|+|||+.+++.+..+.+|...|.+++|+ +++
T Consensus 48 ~~~~~~~~~~~~---~~l~gH~~~V~~~~~sp~~~--~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s--~~g 120 (380)
T 3iz6_a 48 AVSFNPTDLVCC---RTLQGHSGKVYSLDWTPEKN--WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA--PNG 120 (380)
T ss_dssp CCCCCCCCCEEE---EEECCCSSCEEEEEECTTSS--CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEEC--TTS
T ss_pred ccccccceeEEe---ecccccccEEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEEC--CCC
Confidence 445555554433 36899999999999999999 79999999999999999999999999999999999985 567
Q ss_pred cEEEEEecCCcEEEEecCCCC-------ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC
Q 001318 511 QFIFSTALDGKIKAWLYDNLG-------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 583 (1101)
Q Consensus 511 ~~l~s~~~dg~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 583 (1101)
++|++|+.|+.+++||+.... ....+.+|...+.++.|.|++. ..|++++.|+
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~--------------------~~l~s~s~D~ 180 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE--------------------TRLITGSGDQ 180 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS--------------------SCEEEECTTS
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCC--------------------CEEEEECCCC
Confidence 899999999999999997532 1223455555555555555432 4699999999
Q ss_pred cEEEEECCCCceeEEEcC---CCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 584 SIKFWDMDSVQLLTSIDA---DGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
+|++||+.+++.+..+.. .++...|.+++|++ ++++|++|+.|++|++||+......+..+
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--------------- 245 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--------------- 245 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE---------------
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE---------------
Confidence 999999999998887732 23455789999987 89999999999999999976331111100
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 739 (1101)
T Consensus 246 -------------------------------------------------------------------------------- 245 (380)
T 3iz6_a 246 -------------------------------------------------------------------------------- 245 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
.+|...|.+++|+|++++
T Consensus 246 --------------------------------------------------------------~~h~~~v~~v~~~p~~~~ 263 (380)
T 3iz6_a 246 --------------------------------------------------------------HGHEGDINSVKFFPDGQR 263 (380)
T ss_dssp --------------------------------------------------------------CCCSSCCCEEEECTTSSE
T ss_pred --------------------------------------------------------------CCcCCCeEEEEEecCCCe
Confidence 016667778888888888
Q ss_pred EEEEe-CCeEEEEECCCCceeeEecCCC-------CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee----cC
Q 001318 820 VMSAS-GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL----KG 887 (1101)
Q Consensus 820 la~~s-dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l----~~ 887 (1101)
|++++ |++|++||+.+++.+..+..+. ..|++++|+| ++++|++|+.||.|++||+.+++.+..+ .+
T Consensus 264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 342 (380)
T 3iz6_a 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS 342 (380)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSS
T ss_pred EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCC
Confidence 88887 7888888888887777765442 2489999999 9999999999999999999988877766 68
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCc
Q 001318 888 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 888 h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~ 921 (1101)
|.+.|++++|+|||++|+||+.|++|++|++...
T Consensus 343 h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 343 HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999999999999999999999999874
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=354.79 Aligned_cols=300 Identities=18% Similarity=0.297 Sum_probs=248.5
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
..+.+|.+.|++++|+|+|++ |++|+.||+|+|||+.+++.... +..|...|.+++|+|+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 119 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECAFAPN 119 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCEECTT
T ss_pred ecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEEECCC
Confidence 334569999999999999996 99999999999999999887663 7789999999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe--
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 492 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 492 (1101)
|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+..+
T Consensus 120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~ 198 (380)
T 3iz6_a 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIFGS 198 (380)
T ss_dssp SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEeec
Confidence 99999999999999999976421 1122357899999999999998654 6999999999999999999999887
Q ss_pred ---cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC-CCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 493 ---EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 493 ---~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
.+|...|.+++|++ .++.+|++|+.|++|++||++. ......+..|...|.+++|+|++
T Consensus 199 ~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~---------------- 261 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG---------------- 261 (380)
T ss_dssp CSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS----------------
T ss_pred ccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC----------------
Confidence 67999999999854 3568999999999999999984 35555666666666655555554
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC-----CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccc
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 643 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 643 (1101)
++|++++.||+|++||+++++.+..+..+.. ...|.+++|+|+|++|++|+.||.|++||..++ +....
T Consensus 262 -----~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~ 335 (380)
T 3iz6_a 262 -----QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLN 335 (380)
T ss_dssp -----SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEE
T ss_pred -----CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEE
Confidence 5899999999999999999999888865432 234889999999999999999999999998766 22211
Q ss_pred cccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCC
Q 001318 644 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 723 (1101)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~ 723 (1101)
+..
T Consensus 336 ~~~----------------------------------------------------------------------------- 338 (380)
T 3iz6_a 336 LGT----------------------------------------------------------------------------- 338 (380)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred Eec-----------------------------------------------------------------------------
Confidence 100
Q ss_pred CccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeecc
Q 001318 724 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 768 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 768 (1101)
...+|...|.+++|+|+|..|++++.|+.|++|++.
T Consensus 339 ---------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 339 ---------LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp ---------SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ---------ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 002377899999999999999999999999999974
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=356.39 Aligned_cols=359 Identities=11% Similarity=0.147 Sum_probs=268.9
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeC----CCcce------eEeeeeeeeecCCCCcccccccccCCCC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEV----GSRER------LVLRNFKVWDLGACSMPLQAALVKDPGV 408 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (1101)
.....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++. ....... ........+|.+
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 109 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP---------FALSASSGKTTN 109 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC---------CCCC------CB
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc---------ccccccccCCCC
Confidence 3344577999999999999934999999999999999 88773 2210000 000001234788
Q ss_pred CeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
.|++++|+|++++|++++.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcE
Confidence 999999999999999999999999999 4454444 5778999999999999999 799999999999999999999
Q ss_pred EEEecCcccC---------------eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCc
Q 001318 489 QYIFEGHEAP---------------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 553 (1101)
Q Consensus 489 ~~~~~~h~~~---------------v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 553 (1101)
+..+..+... +.+++|++. ..+++++.||.|++||+.+......+..+...+.+++|+|++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~- 259 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN- 259 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-
Confidence 9999888777 888888654 469999999999999999887777776666666655555544
Q ss_pred eEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001318 554 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 633 (1101)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 633 (1101)
++|++++.|+.|++||+.+++.+..+..+. ..+.+++|+|++ ++++++.|+.|++||
T Consensus 260 --------------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~d~~i~i~d 316 (425)
T 1r5m_A 260 --------------------KLLLSASDDGTLRIWHGGNGNSQNCFYGHS--QSIVSASWVGDD-KVISCSMDGSVRLWS 316 (425)
T ss_dssp --------------------TEEEEEETTSCEEEECSSSBSCSEEECCCS--SCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred --------------------CEEEEEcCCCEEEEEECCCCccceEecCCC--ccEEEEEECCCC-EEEEEeCCCcEEEEE
Confidence 579999999999999999999998887554 479999999999 999999999999999
Q ss_pred ecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcc
Q 001318 634 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 713 (1101)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 713 (1101)
+.++ ..+..+.
T Consensus 317 ~~~~-~~~~~~~-------------------------------------------------------------------- 327 (425)
T 1r5m_A 317 LKQN-TLLALSI-------------------------------------------------------------------- 327 (425)
T ss_dssp TTTT-EEEEEEE--------------------------------------------------------------------
T ss_pred CCCC-cEeEecc--------------------------------------------------------------------
Confidence 8766 2222111
Q ss_pred eeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcc
Q 001318 714 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 793 (1101)
Q Consensus 714 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~ 793 (1101)
.|...|.+++|+|++++|++++.||.|++|++.....
T Consensus 328 ----------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~--------------------- 364 (425)
T 1r5m_A 328 ----------------------VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS--------------------- 364 (425)
T ss_dssp ----------------------CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------------------
T ss_pred ----------------------cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc---------------------
Confidence 1456778888888888888888888888888632110
Q ss_pred ccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCC--CeEEEEEecCCCcEEEEEeccCeE
Q 001318 794 MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSI 871 (1101)
Q Consensus 794 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~v 871 (1101)
.. .. +....++. +.......+..+.+|.. .|++++|+| ++++|++|+.||.|
T Consensus 365 -~~------------~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 365 -KS------------RS---------LYGNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEG 418 (425)
T ss_dssp ---------------------------------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCC
T ss_pred -ce------------ee---------eecccccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceE
Confidence 00 00 00001222 22223457788888866 999999999 89999999999999
Q ss_pred EEEEee
Q 001318 872 QIYNVR 877 (1101)
Q Consensus 872 ~vwd~~ 877 (1101)
++||+.
T Consensus 419 ~iw~~~ 424 (425)
T 1r5m_A 419 SVVAIP 424 (425)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-38 Score=346.59 Aligned_cols=293 Identities=13% Similarity=0.124 Sum_probs=231.3
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCC--------ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~--------~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~ 474 (1101)
...|...|.+++|||||++|++++ |+++++||.... ...........|...|.+++|+|++. |++|+.
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~---l~~~s~ 101 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG---ILVASD 101 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE---EEEEET
T ss_pred cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe---EEEEEC
Confidence 345778899999999999999887 777888863210 00000111234667899999999864 889999
Q ss_pred CCcEEEEeCCCCceEEE----ecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEcc
Q 001318 475 DKTIKVWDATNGAKQYI----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 550 (1101)
Q Consensus 475 d~~i~iwd~~~~~~~~~----~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 550 (1101)
||+|+|||+.+++.+.. +.+|.+.|++++|+ +++++|++|+.|++|++||+.+++....+..|...|.+++|++
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL--SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred CCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 99999999999886544 45899999999985 5678999999999999999999988888888988888888888
Q ss_pred CCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcE
Q 001318 551 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGI 629 (1101)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 629 (1101)
++. ..|++++.|+.|++||+++++....+....+...+.+++|+| ++++|++|+.||.|
T Consensus 180 ~~~--------------------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v 239 (344)
T 4gqb_B 180 HKD--------------------SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239 (344)
T ss_dssp SCT--------------------TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred CCC--------------------CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcE
Confidence 775 468999999999999999999988887655555688999999 56789999999999
Q ss_pred EEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccC
Q 001318 630 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 709 (1101)
Q Consensus 630 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 709 (1101)
++||+.++ +.+..+.
T Consensus 240 ~~wd~~~~-~~~~~~~---------------------------------------------------------------- 254 (344)
T 4gqb_B 240 SLVDTKST-SCVLSSA---------------------------------------------------------------- 254 (344)
T ss_dssp EEEESCC---CCEEEE----------------------------------------------------------------
T ss_pred EEEECCCC-cEEEEEc----------------------------------------------------------------
Confidence 99998765 2211110
Q ss_pred CCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccC
Q 001318 710 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 789 (1101)
Q Consensus 710 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~ 789 (1101)
T Consensus 255 -------------------------------------------------------------------------------- 254 (344)
T 4gqb_B 255 -------------------------------------------------------------------------------- 254 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccCCCCCCCCeeEEEEecCC-CEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec
Q 001318 790 PSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 867 (1101)
Q Consensus 790 ~~g~~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 867 (1101)
+|...|.+++|+|++ ++|++|+ |++|+|||+.++++. .+.+|.+.|++++|+|++..+|++|+.
T Consensus 255 -------------~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~ 320 (344)
T 4gqb_B 255 -------------VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGW 320 (344)
T ss_dssp -------------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred -------------CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcC
Confidence 156667788888877 4678887 889999999887654 578899999999999955568889999
Q ss_pred cCeEEEEEeecce
Q 001318 868 DSSIQIYNVRVDE 880 (1101)
Q Consensus 868 dg~v~vwd~~~~~ 880 (1101)
||+|++|++.+..
T Consensus 321 D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 321 DHQVVHHVVPTEP 333 (344)
T ss_dssp TSCEEEEECCC--
T ss_pred CCeEEEEECCCCC
Confidence 9999999998754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=341.08 Aligned_cols=289 Identities=15% Similarity=0.197 Sum_probs=247.1
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.+|.+.|++++|+||+++||+|+.|++|+|||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 478999999999999999999999999999999999887654 4667899999999999999 89999999999999
Q ss_pred eCCCC------ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceE
Q 001318 482 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 482 d~~~~------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 555 (1101)
++... .....+.+|.+.|.+++|+ +++..|++++.|++|++||+.+++....+..|...+.++.++++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~--- 208 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFT--NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE--- 208 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS---
T ss_pred EEeccccccccccceeeeccCCcEEEEEEe--CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC---
Confidence 98654 3456778899999999985 455799999999999999999988888888777777776665532
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
++++|++|+.||.|++||+++++++..+..|. ..|.+++|+|++++|++++.|++|++||+.
T Consensus 209 ----------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 209 ----------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp ----------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ----------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 34689999999999999999999999987664 479999999999999999999999999986
Q ss_pred CccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCccee
Q 001318 636 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 715 (1101)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 715 (1101)
.+ .....+.
T Consensus 271 ~~-~~~~~~~---------------------------------------------------------------------- 279 (354)
T 2pbi_B 271 AD-REVAIYS---------------------------------------------------------------------- 279 (354)
T ss_dssp TT-EEEEEEC----------------------------------------------------------------------
T ss_pred CC-cEEEEEc----------------------------------------------------------------------
Confidence 54 1100000
Q ss_pred eeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccc
Q 001318 716 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 795 (1101)
Q Consensus 716 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~ 795 (1101)
.
T Consensus 280 --------------------------------~----------------------------------------------- 280 (354)
T 2pbi_B 280 --------------------------------K----------------------------------------------- 280 (354)
T ss_dssp --------------------------------C-----------------------------------------------
T ss_pred --------------------------------C-----------------------------------------------
Confidence 0
Q ss_pred ccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEE
Q 001318 796 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 874 (1101)
Q Consensus 796 ~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 874 (1101)
..+...+.+++|+|++++|++++ |+.|++||+.+++.+..+.+|...|++++|+| ++++||+|+.||.|+||
T Consensus 281 ------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 281 ------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred ------CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEec
Confidence 00233467888999999999998 89999999999999999999999999999999 99999999999999999
Q ss_pred E
Q 001318 875 N 875 (1101)
Q Consensus 875 d 875 (1101)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=338.51 Aligned_cols=216 Identities=21% Similarity=0.317 Sum_probs=181.1
Q ss_pred cccCCCCCeEEEEE-----ec-CCCeEEEEEcCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCeEEEEE
Q 001318 402 LVKDPGVSVNRVIW-----SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 471 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s 471 (1101)
.+.+|.+.|++++| ++ |+++|++|+.|++|++||+.+++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 58899999999999 77 999999999999999999976532 123446889999999999999999 7999
Q ss_pred ecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee---cCCCCceeEEEE
Q 001318 472 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY 548 (1101)
Q Consensus 472 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 548 (1101)
|+.|++|++||+++++.+..+.+|...|.+++|+ +++.+|++++.|++|++||+.. ...... ..+...+.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS--PDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC--SSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC--CCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 9999999999999999999999999999999985 4568999999999999999974 322222 256677888888
Q ss_pred ccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001318 549 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 628 (1101)
Q Consensus 549 s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 628 (1101)
+|++... ..+.|.+.++++++.|+.|++||. ..+....+..|. ..|.+++|+|+|++|++|+.||.
T Consensus 171 ~~~~~~~-----------~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~--~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 171 SPIMKSA-----------NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE--SNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp CCCCCSC-----------SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTCE
T ss_pred ccccccc-----------cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc--ccceEEEECCCCCEEEEEcCCCe
Confidence 8876411 123455678999999999999994 566667776554 47999999999999999999999
Q ss_pred EEEEEecC
Q 001318 629 IKILATSD 636 (1101)
Q Consensus 629 i~iw~~~~ 636 (1101)
|++||+.+
T Consensus 237 v~iwd~~~ 244 (343)
T 2xzm_R 237 LLIWDILN 244 (343)
T ss_dssp EEEEESSC
T ss_pred EEEEECCC
Confidence 99999743
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=340.12 Aligned_cols=301 Identities=16% Similarity=0.211 Sum_probs=238.7
Q ss_pred cccc-ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 736 LRAT-KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 736 ~~~~-~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
+|.. .|..++|+|+|++|++++.|+.|+||++.... .........+|...|.+++|+
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~----------------------~~~~~~~~~~h~~~v~~~~~s 70 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS----------------------WICKSVLSEGHQRTVRKVAWS 70 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTE----------------------EEEEEEECSSCSSCEEEEEEC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc----------------------ceeeeeeccccCCcEEEEEEC
Confidence 3666 89999999999999999999999999974321 000000112389999999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCC--ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc---eEeeeecCc
Q 001318 815 KNDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGH 888 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h 888 (1101)
|++++|++++ |++|++||+.++ +++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++ +++..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999999 999999998866 45788999999999999999 9999999999999999999865 456778899
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEc
Q 001318 889 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 967 (1101)
Q Consensus 889 ~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~ 967 (1101)
...|.+++|+|++++|++++.|++|++||+.+++. .+.....+|. ..|.+++|+|+|++|++ +.|+.|++||.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 99999999999999999999999999999877542 2334455665 48999999999999999 68999999996
Q ss_pred CCc---------------eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeee--cCCCcccCCCC
Q 001318 968 TKL---------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR--INPSAYLPAGV 1030 (1101)
Q Consensus 968 ~~~---------------~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~--~~~~~~~~~~~ 1030 (1101)
... +++..+. ..|...|++++|+|++.+|++++.|+.|++|+...+..... +........+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 302 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred ccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence 322 2233332 23789999999999999999999999999999876532110 00001112244
Q ss_pred CCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 1031 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1031 ~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
... |. +++|+|+++.+|++|+.||+|++|++.+.+.
T Consensus 303 ~~~-V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 303 SQD-VN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SSC-EE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cCc-Ee--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 333 66 9999996557999999999999999988773
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=336.62 Aligned_cols=324 Identities=14% Similarity=0.166 Sum_probs=264.3
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
|.+.|.+++|+|||++ ++++..++.+.+|+........ ...+|...|++++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 5678999999999996 7777767777777655443322 1457999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeec--cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc--eEEEecCcccCe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV 499 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v 499 (1101)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999876554443444 7999999999999999 79999999999999999887 667788899999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.+++|+ ++++++++++.||.|++||+++.+....+..+...+.+++|+|+ +++++++
T Consensus 145 ~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~---------------------~~~l~~~ 201 (337)
T 1gxr_A 145 YALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND---------------------GTKLWTG 201 (337)
T ss_dssp EEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT---------------------SSEEEEE
T ss_pred EEEEEC--CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCC---------------------CCEEEEE
Confidence 999985 45689999999999999999987777776666665655555554 4579999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
+.||.|++||+++++.+..+... ..+.+++|+|+++++++++.++.|++|++.++. ...
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~~----------------- 260 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQ----------------- 260 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEE-----------------
T ss_pred ecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eEE-----------------
Confidence 99999999999999988887633 358999999999999999999999999976541 000
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 739 (1101)
T Consensus 261 -------------------------------------------------------------------------------- 260 (337)
T 1gxr_A 261 -------------------------------------------------------------------------------- 260 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
+ ..|...+.+++|+|++++
T Consensus 261 -----------------------------------------------------------~--~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 261 -----------------------------------------------------------L--HLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp -----------------------------------------------------------E--CCCSSCEEEEEECTTSSE
T ss_pred -----------------------------------------------------------E--cCCccceeEEEECCCCCE
Confidence 0 015566778888888888
Q ss_pred EEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 820 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 820 la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+++++ ||.|++||+.+++.+.... |...+.+++|+| ++++|++++.||.|++|++.
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 88887 7888888888887775543 778899999999 89999999999999999974
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=326.84 Aligned_cols=252 Identities=18% Similarity=0.268 Sum_probs=216.4
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
....+|...|++++|+|+|++ |++|+.||.|+||++.+++... .+.+|...|.+++|+|+
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~ 76 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSD 76 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTT
T ss_pred EEEcccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCC
Confidence 334569999999999999995 9999999999999999887665 37789999999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
+++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++||+++++.+..+..|...
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 151 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred CCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence 9999999999999999999988665 5788999999999999999 7999999999999999999999999999999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|.+++|+ +++.+|++++.||.|++||+.+.+....+... ....+..++|+|+++++++
T Consensus 152 v~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 152 VSAVHFN--RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--------------------DNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCS--------------------SCCCEEEEEECTTSSEEEE
T ss_pred EEEEEEc--CCCCEEEEEeCCCcEEEEECCCCceeeEEecc--------------------CCCceEEEEECCCCCEEEE
Confidence 9999985 56689999999999999999886655443221 1224556667777779999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEEecCc
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++.|+.|++||+.+++.+..+..+..........++ +++.+|++|+.||.|++||+.++
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 999999999999999999998876654333444554 57899999999999999998776
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=363.23 Aligned_cols=367 Identities=14% Similarity=0.185 Sum_probs=269.4
Q ss_pred cCCCCcEEEEEecCCCeEEEEE----------ecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVG----------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 412 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 412 (1101)
.+...|.+++|+|+|+.++++| +.|+.|+|||+.+++.... .....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEE
Confidence 3556899999999998679999 8899999999998763210 013468899999
Q ss_pred EEEecCCCeEEEEEcCCeEEEEEccCCce-eeeeeeeccccCCeeEEEEcCC-CCeEEEEEecCCCcEEEEeCCCCc---
Q 001318 413 VIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGA--- 487 (1101)
Q Consensus 413 l~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--- 487 (1101)
++|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1133367899999999999998 66 79999999999999999887
Q ss_pred ---eEE---EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCC------CCceeEEEEccCCceE
Q 001318 488 ---KQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTRT 555 (1101)
Q Consensus 488 ---~~~---~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~~ 555 (1101)
... .+.+|...|.+++|+++. +.+|++++.||.|++||+++.+....+..+ ...+.+++|+|++.
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 227 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS-- 227 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--
Confidence 333 346799999999996542 479999999999999999987777666655 44455555555442
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCC---cEEEEECCCC-ceeEEEc-CCCCCCCcCeEEEcc-CCCEEEEEeCCCcE
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSV-QLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGI 629 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 629 (1101)
.++++++.|+ .|++||++++ ..+..+. .+ ...|.+++|+| ++++|++++.||.|
T Consensus 228 ------------------~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v 287 (416)
T 2pm9_A 228 ------------------TRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTV 287 (416)
T ss_dssp ------------------TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred ------------------CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCE
Confidence 5789999998 9999999986 5555555 44 44799999999 99999999999999
Q ss_pred EEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccC
Q 001318 630 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 709 (1101)
Q Consensus 630 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 709 (1101)
++||+.++ +.+..+.
T Consensus 288 ~~wd~~~~-~~~~~~~---------------------------------------------------------------- 302 (416)
T 2pm9_A 288 LLWNPESA-EQLSQFP---------------------------------------------------------------- 302 (416)
T ss_dssp EEECSSSC-CEEEEEE----------------------------------------------------------------
T ss_pred EEeeCCCC-ccceeec----------------------------------------------------------------
Confidence 99998876 3332221
Q ss_pred CCcceeeeccccCCCccccccccCccccccceEEEEEcCCC-ceEEeeecCceEEeeeccccccCCCCceeeeecCcccc
Q 001318 710 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 788 (1101)
Q Consensus 710 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~ 788 (1101)
.|...|.+++|+|++ ..+++++.|+.|++|++....
T Consensus 303 --------------------------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~----------------- 339 (416)
T 2pm9_A 303 --------------------------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT----------------- 339 (416)
T ss_dssp --------------------------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC-----------------
T ss_pred --------------------------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC-----------------
Confidence 156678899999999 789999999999999974211
Q ss_pred CCCccccccccCCCCCCC-----CeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEE
Q 001318 789 PPSGIMMTNDVTDSNPEE-----AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 863 (1101)
Q Consensus 789 ~~~g~~~~~~~~~~~~~~-----~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la 863 (1101)
... . ... ......+.+.+..++.+. .+.. ... .....|...+.+++|+| +|++||
T Consensus 340 -----~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~-~~~~~~~~~~~~~~~s~-dg~~la 399 (416)
T 2pm9_A 340 -----NTL----D--EQETETKQQESETDFWNNVSREESKE--KPSV-----FHL-QAPTWYGEPSPAAHWAF-GGKLVQ 399 (416)
T ss_dssp -----CSS----C--C----------------------CCS--CCCS-----SCC-CCCSTTCCCSCCCEEET-TTEEEC
T ss_pred -----CCc----c--cccccccccCCccccccccccccccc--cccc-----ccc-cCCccccCCccceEEee-CCeEEE
Confidence 000 0 110 001111222222222111 0100 111 22234667788999999 999999
Q ss_pred EEeccCeEEEEEeecc
Q 001318 864 IGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 864 sg~~dg~v~vwd~~~~ 879 (1101)
+|+.||.|+||++.+.
T Consensus 400 ~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 400 ITPDGKGVSITNPKIS 415 (416)
T ss_dssp BCTTSSCBCCBCCCCC
T ss_pred EeCCCCeEEEEEeccC
Confidence 9999999999998764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=354.24 Aligned_cols=353 Identities=12% Similarity=0.121 Sum_probs=291.0
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
..+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+....|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 34568999999996 9999999999999998876543 24445 455666889999999999
Q ss_pred EcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeee
Q 001318 426 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 505 (1101)
Q Consensus 426 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 505 (1101)
+.|+.|++||+.+++... .+.+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999887554 5679999999999999999 89999999999999999999999999999999999986
Q ss_pred ecCCccEEEEEecCCcEEEEecCCCCceeeecC---CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 506 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 506 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
+ ++.+|++++.||+|++||+++++....+.. +...+.++++.+.+...........+..++|+|+++++++++.|
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence 4 568999999999999999999888777764 56789999998887765555566788889999999999999999
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
|.|++||+.+++.+..+.. .+...|.+++|+|+++ +|++++.||.|++||+.++...+..+..|.....
T Consensus 269 g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v--------- 338 (420)
T 3vl1_A 269 GVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPI--------- 338 (420)
T ss_dssp SCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCE---------
T ss_pred CeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCc---------
Confidence 9999999999988877753 3345799999999999 9999999999999999988555555554322111
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccC--cccccc
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP--ENLRAT 739 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~--~~~~~~ 739 (1101)
.....+++..+++++.|+.+++|++..............+ ...+..
T Consensus 339 --------------------------------~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (420)
T 3vl1_A 339 --------------------------------NNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD 386 (420)
T ss_dssp --------------------------------EEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC
T ss_pred --------------------------------eEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc
Confidence 1123446789999999999999999875444333222211 145788
Q ss_pred ceEEEEEcCCCc---eEEeeecCceEEeeecc
Q 001318 740 KISRLIFTNSGN---AILALASNAIHLLWKWQ 768 (1101)
Q Consensus 740 ~i~~l~~s~~g~---~l~~~~~dg~i~iw~~~ 768 (1101)
.|.+++|+|++. .+++++.+|.+.+|++.
T Consensus 387 ~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 387 AVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred ceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 999999999999 89999999999999873
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=375.50 Aligned_cols=526 Identities=11% Similarity=0.057 Sum_probs=371.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
+...+.+.+|||+ + |+..+. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4567899999964 4 555554 799999998876542 678999999999999999999
Q ss_pred EEEcC------CeEEEEEccCCceeeeeeeeccccCCe-------eEEEEcCCCCeEEEEEecCC------CcEEEEeCC
Q 001318 424 VAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDD------KTIKVWDAT 484 (1101)
Q Consensus 424 s~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V-------~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~ 484 (1101)
+++.+ ..|++||+.+++.. .+..|...+ ..++|+|||+ ++++++.+ ..|++||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~~----~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEIK----RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEEE----ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCeE----EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88654 47999999987632 477888888 9999999998 67777754 458888887
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEec------------CCcEEEEecCCCCceeeecCCCCceeEEEEccCC
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL------------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 552 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 552 (1101)
+++... +..+. ...++|+ + | ++++++. +...++|..........+..+...+.+
T Consensus 143 ~g~~~~-l~~~~--~~~~~~s--p-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~------- 208 (1045)
T 1k32_A 143 GINFVP-LNLGP--ATHILFA--D-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSS------- 208 (1045)
T ss_dssp GTEEEE-CCSCS--CSEEEEE--T-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEE-------
T ss_pred CCCeEE-ecCCC--cceeeeC--C-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccc-------
Confidence 776543 33332 3345665 3 5 8888763 234556644333333333444444444
Q ss_pred ceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001318 553 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 631 (1101)
+.|+++ ..+++++.++.+.+|.+.. +.....+..+. .+...+|+|||++|+.+. ++.|++
T Consensus 209 --------------~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~ 269 (1045)
T 1k32_A 209 --------------PVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYI 269 (1045)
T ss_dssp --------------EEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEE
T ss_pred --------------eEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEE
Confidence 444444 3566777889999998653 44445554333 366789999999998884 899999
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 711 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 711 (1101)
|++... .. ..+.++... .
T Consensus 270 ~d~~~~-~l-~~l~~~~~~------------------------------------------------------------~ 287 (1045)
T 1k32_A 270 FNPDTE-KI-EKIEIGDLE------------------------------------------------------------S 287 (1045)
T ss_dssp ECTTTC-CE-EECCCCCCC------------------------------------------------------------B
T ss_pred ecCCce-Ee-eeeccCccc------------------------------------------------------------c
Confidence 987322 11 112110000 0
Q ss_pred cceeeeccccCCCccccccccCccccccceEEEEEc-CCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCC
Q 001318 712 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 790 (1101)
Q Consensus 712 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~ 790 (1101)
.. .. ..+...+.+++|+ |||+.+++++ ++.+.+|+..
T Consensus 288 ~~--------------~~-----~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~---------------------- 325 (1045)
T 1k32_A 288 PE--------------DR-----IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS---------------------- 325 (1045)
T ss_dssp CC--------------SE-----EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----------------------
T ss_pred cc--------------cc-----cccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----------------------
Confidence 00 00 1145678899999 9999888877 7788888763
Q ss_pred CccccccccCCCCCCC-CeeEEEEecCCCEEEEEe-CCeEE-EEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec
Q 001318 791 SGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS-GGKIS-LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 867 (1101)
Q Consensus 791 ~g~~~~~~~~~~~~~~-~i~~~~~s~dg~~la~~s-dg~i~-vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 867 (1101)
++.... +. .+.. .+..++|+ ||+.+++++ ++.+. +||+.+++.. .+.+|...+..++|+| |+++||+++.
T Consensus 326 ~~~~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~ 398 (1045)
T 1k32_A 326 GTYVLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVAND 398 (1045)
T ss_dssp SSBEEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEET
T ss_pred CCceEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECC
Confidence 222111 11 1555 78999999 999999988 57788 9999876654 4447888899999999 9999999999
Q ss_pred cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC----------ceEEEeCCCcccccceeeecCCCCCC
Q 001318 868 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS----------QLCVWSSDGWEKQKNRFLQIPTGRTP 937 (1101)
Q Consensus 868 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~----------~v~iwd~~~~~~~~~~~~~~~~~~~~ 937 (1101)
++.|++||+.+++....+.+|.+.|.+++|||||++|++++.++ .|++||+.+++. .....+.
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------~~l~~~~- 471 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------FAATTEN- 471 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------EECSCSS-
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE------EEeeCCC-
Confidence 99999999999988888878999999999999999999887654 899999988541 1222222
Q ss_pred CCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCcee-----------------------------------------eee
Q 001318 938 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC-----------------------------------------VKQ 975 (1101)
Q Consensus 938 ~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~-----------------------------------------~~~ 975 (1101)
..+..++|+|||++|+. +.++...+|+...... .+.
T Consensus 472 --~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 549 (1045)
T 1k32_A 472 --SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 549 (1045)
T ss_dssp --SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred --cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHce
Confidence 35678999999999988 4555555565432211 000
Q ss_pred ccCCCCCCCeeEEEEcCCCCEEEE-------------EEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEE
Q 001318 976 WVPRESSAPITHATFSCDSQLVYA-------------CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1042 (1101)
Q Consensus 976 ~~~~~h~~~i~~l~~spdg~~l~s-------------~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~ 1042 (1101)
.....|...+..++|+|||+++++ ...+..|++||+.+++..... .+ +. .++|
T Consensus 550 ~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~-----v~--~~~~ 615 (1045)
T 1k32_A 550 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NN-----LT--DLRL 615 (1045)
T ss_dssp EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EE-----EE--EEEE
T ss_pred EEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cC-----cc--eEEE
Confidence 111235678899999999998875 123557899999988754221 11 33 7899
Q ss_pred eCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1043 HPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1043 ~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+| ||++|++++.| .|++||+.+++
T Consensus 616 S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 616 SA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred CC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 99 78999988866 89999998876
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=339.32 Aligned_cols=303 Identities=18% Similarity=0.300 Sum_probs=230.7
Q ss_pred CCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeecccc------------------CCeeEEEEcCCCCe
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV------------------GGVNDIAFSHPNKQ 466 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~------------------~~V~~~~~s~d~~~ 466 (1101)
+|.+.|.+++|||||++||+|+ +++++||++.+++.+.. +.+|. ..|.+++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR---LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE---ECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE---ecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 6999999999999999999986 68999999999886653 33332 2499999999999
Q ss_pred EEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEE
Q 001318 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 546 (1101)
Q Consensus 467 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 546 (1101)
+|++|+.|++|+|||+.+++.+..+.+|...|.+++|+ +++.+|++++.|++|++||++++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~s~d~~v~iwd~~~~---------------- 197 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF--PSGDKLVSGSGDRTVRIWDLRTG---------------- 197 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTT----------------
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEc--CCCCEEEEecCCCcEEEEECCCC----------------
Confidence 79999999999999999999999999999999999885 44567777777777777776542
Q ss_pred EEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeC
Q 001318 547 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 625 (1101)
Q Consensus 547 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 625 (1101)
+....+..+ ..+.+++|+| ++++|++++.
T Consensus 198 -----------------------------------------------~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 198 -----------------------------------------------QCSLTLSIE---DGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp -----------------------------------------------EEEEEEECS---SCEEEEEECSTTCCEEEEEET
T ss_pred -----------------------------------------------eeEEEEEcC---CCcEEEEEECCCCCEEEEEcC
Confidence 222222211 1377899999 8999999999
Q ss_pred CCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCcccee
Q 001318 626 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 705 (1101)
Q Consensus 626 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 705 (1101)
|+.|++||+.++ ..+..+.....
T Consensus 228 d~~v~iwd~~~~-~~~~~~~~~~~-------------------------------------------------------- 250 (393)
T 1erj_A 228 DRAVRVWDSETG-FLVERLDSENE-------------------------------------------------------- 250 (393)
T ss_dssp TSCEEEEETTTC-CEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEECCCC-cEEEeeccccc--------------------------------------------------------
Confidence 999999998876 32222110000
Q ss_pred eccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCc
Q 001318 706 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 785 (1101)
Q Consensus 706 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 785 (1101)
...+|...|.+++|+|+++.|++++.|+.|++||+.....
T Consensus 251 ---------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~------------- 290 (393)
T 1erj_A 251 ---------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN------------- 290 (393)
T ss_dssp -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------
T ss_pred ---------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC-------------
Confidence 0012566777777777777777777777777776521000
Q ss_pred cccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEE
Q 001318 786 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 865 (1101)
Q Consensus 786 lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg 865 (1101)
. ... -....+.+...+.+|...|.+++|+| ++++|++|
T Consensus 291 ---------~-------------~~~-------------------~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg 328 (393)
T 1erj_A 291 ---------K-------------SDS-------------------KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSG 328 (393)
T ss_dssp ---------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEE
T ss_pred ---------c-------------ccc-------------------cCCCCCcceEEEecccCcEEEEEECC-CCCEEEEE
Confidence 0 000 00012345566778999999999999 89999999
Q ss_pred eccCeEEEEEeecceEeeeecCcccCeeEEEEcC------CCCEEEEEeCCCceEEEeCCC
Q 001318 866 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 866 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~------dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
+.||.|++||+.+++.+..+.+|.+.|.+++|++ ++.+|+||+.|++|+||++..
T Consensus 329 s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999999999999999999999999986 688999999999999999865
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=325.13 Aligned_cols=291 Identities=22% Similarity=0.409 Sum_probs=247.7
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
..++.+|...|++++|+|+++ +|++|+.|+.|++||+.+++....+.+|...|.+++|+ +++++|++++.|+.|++
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--SDSNLLVSASDDKTLKI 91 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEE
T ss_pred EEEEcccCCcEEEEEECCCCC--EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEc--CCCCEEEEECCCCEEEE
Confidence 346889999999999999999 79999999999999999999999999999999999985 45689999999999999
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 604 (1101)
||+.+.+....+..|...+.++.|+| +++++++++.|+.|++||+++++.+..+..+..
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~---------------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 150 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNP---------------------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS---------------------SSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcC---------------------CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC
Confidence 99998877777776666555555555 446899999999999999999999988876544
Q ss_pred CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccc
Q 001318 605 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 684 (1101)
Q Consensus 605 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1101)
.|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 151 --~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~--------------------------------------- 188 (312)
T 4ery_A 151 --PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-QCLKTLI--------------------------------------- 188 (312)
T ss_dssp --CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEEC---------------------------------------
T ss_pred --cEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeEEe---------------------------------------
Confidence 6999999999999999999999999998665 1111000
Q ss_pred ccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEe
Q 001318 685 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 764 (1101)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 764 (1101)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T 4ery_A 189 -------------------------------------------------------------------------------- 188 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEec
Q 001318 765 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 843 (1101)
Q Consensus 765 w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 843 (1101)
..+...+..++|+|++++|++++ |+.|++||+.+++.+..+.
T Consensus 189 -------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 189 -------------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp -------------------------------------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred -------------------------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 00344577788888999999888 8999999999999888888
Q ss_pred CCCCCeE--EEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEe--CCCceEEEeCC
Q 001318 844 PPPPAAT--FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSD 919 (1101)
Q Consensus 844 ~~~~~i~--~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s--~D~~v~iwd~~ 919 (1101)
+|...+. ...+++.++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++.+|++++ .|++|++|+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 8876543 3455544889999999999999999999999999999999999999999999999987 69999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=333.37 Aligned_cols=320 Identities=12% Similarity=0.145 Sum_probs=259.1
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 406 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
|.+.|.+++|||||++++++..++.+.+|+....... . ...+|...|++++|+|+++ ++++++ |+.|++||+.+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ--I-NTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE--E-EEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc--c-eeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence 4568999999999999999988887777765543222 2 3447999999999999999 788888 99999999987
Q ss_pred Cce---EEEec--CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC--ceeeecCCCCceeEEEEccCCceEEec
Q 001318 486 GAK---QYIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 486 ~~~---~~~~~--~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
++. +..+. +|...|.+++|+ +++++|++++.||.|++||+.+.+ ....+..+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~---------------- 143 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA---------------- 143 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC----------------
T ss_pred CCceeeeecccccCCCCcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCc----------------
Confidence 753 33333 799999999985 466899999999999999998765 23334444444
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
+..++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++++|++++.||.|++||+.++
T Consensus 144 -----i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~- 215 (337)
T 1gxr_A 144 -----CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREG- 215 (337)
T ss_dssp -----EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTT-
T ss_pred -----eEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCC-
Confidence 4455555556689999999999999999999998887654 47999999999999999999999999998655
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
+....+
T Consensus 216 ~~~~~~-------------------------------------------------------------------------- 221 (337)
T 1gxr_A 216 RQLQQH-------------------------------------------------------------------------- 221 (337)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ceEeee--------------------------------------------------------------------------
Confidence 111000
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 799 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 799 ~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
.+...+.+++|+|+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.
T Consensus 222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence 0344567778888888888887 78888888887664 46777999999999999 89999999999999999999
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+++.+.. ..|...|.+++|+|++++|++++.|+.|++|++
T Consensus 296 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 296 YGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9887754 348889999999999999999999999999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-36 Score=345.25 Aligned_cols=346 Identities=12% Similarity=0.110 Sum_probs=273.8
Q ss_pred CCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc
Q 001318 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 487 (1101)
Q Consensus 408 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 487 (1101)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 346689999999999999999999999999876543 34455 4556667899999 79999999999999999999
Q ss_pred eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 488 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 488 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+.+.+....+..|...|.+++|+|++
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--------------- 193 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG--------------- 193 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT---------------
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC---------------
Confidence 9999999999999999864 56799999999999999999988877777777766666665555
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC-CCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccc
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 646 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 646 (1101)
++|++++.|+.|++||+++++.+..+..+. +...+.+++|.+++... ..
T Consensus 194 ------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------------~~---- 243 (420)
T 3vl1_A 194 ------RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ--------------------LH---- 243 (420)
T ss_dssp ------TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS--------------------CG----
T ss_pred ------CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce--------------------ee----
Confidence 579999999999999999999998887542 33455566655432110 00
Q ss_pred ccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcc
Q 001318 647 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 726 (1101)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 726 (1101)
T Consensus 244 -------------------------------------------------------------------------------- 243 (420)
T 3vl1_A 244 -------------------------------------------------------------------------------- 243 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCC
Q 001318 727 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 806 (1101)
Q Consensus 727 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~ 806 (1101)
..+...+.+++|+|+++.+++++.||.|++||+.. +........ .|..
T Consensus 244 --------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------------------~~~~~~~~~--~~~~ 291 (420)
T 3vl1_A 244 --------EISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS----------------------KEQTIQLPS--KFTC 291 (420)
T ss_dssp --------GGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT----------------------CCEEEEECC--TTSS
T ss_pred --------ecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC----------------------CceeEEccc--ccCC
Confidence 01334556677889999999999999999988742 221111111 2788
Q ss_pred CeeEEEEecCCC-EEEEEe-CCeEEEEECCCCce-eeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc---
Q 001318 807 AVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--- 879 (1101)
Q Consensus 807 ~i~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~~-~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--- 879 (1101)
.|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...+.++.+ + ++++|++++.||.|++||+...
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCC
Confidence 999999999999 999998 89999999998754 667766 5667777755 4 6789999999999999999763
Q ss_pred ------eEeeeecCcccCeeEEEEcCCCC---EEEEEeCCCceEEEeCCC
Q 001318 880 ------EVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 880 ------~~~~~l~~h~~~V~~l~~s~dg~---~l~s~s~D~~v~iwd~~~ 920 (1101)
.....+.+|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22234567889999999999999 788888899999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=335.32 Aligned_cols=275 Identities=14% Similarity=0.237 Sum_probs=207.1
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.+.+.++|.+.|+|++|||||++ ||+|+ ++.++||++.+++.+.......-.. .............+...|++++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEEC
Confidence 34556789999999999999995 78876 7899999999988765321100000 000000001112344569999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
|||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||++++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999987655 5889999999999999999 79999999999999999999988887 56
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
..+.+++|++ .++.+|++|+.||.|++||+.++.....+.... ....+ +...+..++|+|++++|
T Consensus 207 ~~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-------------~~~~~-h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 207 DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-------------ESGTG-HKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC-------------------CC-CSSCEEEEEECTTSSEE
T ss_pred CCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccc-------------cCCCC-CCCCEEEEEECCCCCEE
Confidence 6788899864 266899999999999999998876554442110 00011 12356666677777789
Q ss_pred EEEeCCCcEEEEECCCC------------ceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 577 LAAGDDFSIKFWDMDSV------------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++++.|+.|++||+.+. .+...+.+| ...|.+++|+|++++|++|+.|+.|++||..++
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999999763 234455544 447999999999999999999999999998877
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=339.40 Aligned_cols=341 Identities=17% Similarity=0.298 Sum_probs=264.8
Q ss_pred cccCCCCCe-EEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 402 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 402 ~~~~h~~~V-~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
.+.+|...| .+++| ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++++ ++++|+.|++|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 477898885 55555 67899999999999999999988665 678999999999999887 5999999999999
Q ss_pred EeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCc-eEEecc
Q 001318 481 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-RTYQGF 559 (1101)
Q Consensus 481 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~~~~~ 559 (1101)
||+.+++.+..+.+|...|.+++|.+.+++.++++++.||+|++||+.+............ ...+...+++. ......
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEc
Confidence 9999999999999999999999998878889999999999999999987665433222211 11222222221 111111
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
......+.+++++++++++++.||.|++||+.+++.+..+..+. ..|.+++|+|+++++++|+.||.|++||+.++ +
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~ 343 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENG-E 343 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence 22233344557888999999999999999999999999987654 47999999999999999999999999998766 2
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
.+..+.
T Consensus 344 ~~~~~~-------------------------------------------------------------------------- 349 (464)
T 3v7d_B 344 LMYTLQ-------------------------------------------------------------------------- 349 (464)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 221111
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
T Consensus 350 -------------------------------------------------------------------------------- 349 (464)
T 3v7d_B 350 -------------------------------------------------------------------------------- 349 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
+|...|.+++++ ++++++++ ||.|++||+.++....... +...+..++|++ ++++|++|+ ||.|++||+.+
T Consensus 350 ---~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 350 ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp ---CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred ---CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCC
Confidence 145556666665 46777777 7888888888777665554 566788899999 899999998 89999999999
Q ss_pred ceEeee-ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 879 DEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 879 ~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
++++.. +.+|.+.|++++|+ ++.++++++.|+.+.+|-
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 999876 67899999999997 445555666777655553
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=326.90 Aligned_cols=291 Identities=18% Similarity=0.287 Sum_probs=222.1
Q ss_pred eeeeeccccCCeeEEEE-----cC-CCCeEEEEEecCCCcEEEEeCCCC-------ceEEEecCcccCeEEEeeeecCCc
Q 001318 444 QHLEIDAHVGGVNDIAF-----SH-PNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPVYSVCPHHKENI 510 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~-----s~-d~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~v~~~~~~~~ 510 (1101)
...++.+|.+.|++++| ++ +++ +|++|+.|++|++||+.++ .....+.+|...|.+++|+ +++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~--~~~ 88 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS--QEN 88 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEEC--SST
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEEC--CCC
Confidence 34468899999999999 76 787 8999999999999998753 4567889999999999985 456
Q ss_pred cEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001318 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 590 (1101)
Q Consensus 511 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1101)
.++++++.|++|++||+++++....+..|...|.+++|+|++ ++|++++.|+.|++||+
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~---------------------~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN---------------------RQILSAGAEREIKLWNI 147 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST---------------------TEEEEEETTSCEEEEES
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC---------------------CEEEEEcCCCEEEEEec
Confidence 899999999999999999988777777777766666666655 57999999999999999
Q ss_pred CCCceeEEEcCCCCCCCcCeEEEccCC----------CEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCC
Q 001318 591 DSVQLLTSIDADGGLPASPRIRFNKDG----------CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 660 (1101)
Q Consensus 591 ~~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1101)
.............+...|.+++|+|++ .+|++++.||.|++||.. . ....
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-~~~~------------------ 207 (343)
T 2xzm_R 148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F-QIRY------------------ 207 (343)
T ss_dssp SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T-EEEE------------------
T ss_pred cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C-ceeE------------------
Confidence 744333322223445578899999876 455555555555555411 0 0000
Q ss_pred cccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccc
Q 001318 661 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 740 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1101)
T Consensus 208 -------------------------------------------------------------------------------- 207 (343)
T 2xzm_R 208 -------------------------------------------------------------------------------- 207 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEE
Q 001318 741 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 820 (1101)
Q Consensus 741 i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~l 820 (1101)
.+. +|...|.+++|+|+|++|
T Consensus 208 ---------------------------------------------------------~~~--~h~~~v~~~~~s~~g~~l 228 (343)
T 2xzm_R 208 ---------------------------------------------------------TFK--AHESNVNHLSISPNGKYI 228 (343)
T ss_dssp ---------------------------------------------------------EEE--CCSSCEEEEEECTTSSEE
T ss_pred ---------------------------------------------------------EEc--CccccceEEEECCCCCEE
Confidence 001 167778888888888888
Q ss_pred EEEe-CCeEEEEECCC-CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee--eec----------
Q 001318 821 MSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLK---------- 886 (1101)
Q Consensus 821 a~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~--~l~---------- 886 (1101)
++++ |+.|++||+.+ ......+. +...|.+++|+| +++++++| .|+.|++||+.+++... .+.
T Consensus 229 ~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 305 (343)
T 2xzm_R 229 ATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305 (343)
T ss_dssp EEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECS-SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred EEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence 8888 88889998843 33344443 455699999999 88888755 58889999998765433 333
Q ss_pred -CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCc
Q 001318 887 -GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 887 -~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~ 921 (1101)
+|...|++++|+|+|++|++|+.||+|++|+++++
T Consensus 306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 78889999999999999999999999999998764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=353.90 Aligned_cols=357 Identities=11% Similarity=0.035 Sum_probs=246.3
Q ss_pred CCCCeEEEEEecCC---------CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC
Q 001318 406 PGVSVNRVIWSPDG---------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 476 (1101)
Q Consensus 406 h~~~V~~l~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~ 476 (1101)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 57799999999987 899999866420 01368888 799999999
Q ss_pred cEEEEeCCCCceE----EEecCcccCeEEEeeeec----CCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEE
Q 001318 477 TIKVWDATNGAKQ----YIFEGHEAPVYSVCPHHK----ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 548 (1101)
Q Consensus 477 ~i~iwd~~~~~~~----~~~~~h~~~v~~v~~~~~----~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 548 (1101)
+|+|||+.+++.. .++.+|.+.|.+++|++. +++.+|++++.||+|++||+........
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~------------- 250 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH------------- 250 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS-------------
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc-------------
Confidence 9999999887753 456678899999999876 3467999999999999999875432100
Q ss_pred ccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001318 549 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 628 (1101)
Q Consensus 549 s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 628 (1101)
... ...++...+..+ ...|.+++|++++ .|++|+.||+
T Consensus 251 --------------------------~~~-------------~~~~p~~~l~~h--~~~v~sv~~s~~~-~lasgs~Dgt 288 (524)
T 2j04_B 251 --------------------------VFK-------------MCEKPSLTLSLA--DSLITTFDFLSPT-TVVCGFKNGF 288 (524)
T ss_dssp --------------------------EEE-------------CCCSCSEEECCT--TTCEEEEEESSSS-EEEEEETTSE
T ss_pred --------------------------cce-------------eecCceEEEEcC--CCCEEEEEecCCC-eEEEEeCCCE
Confidence 000 001122234433 3468999999864 8999999999
Q ss_pred EEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeecc
Q 001318 629 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 708 (1101)
Q Consensus 629 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 708 (1101)
|++||+.++......+
T Consensus 289 V~lWD~~~~~~~~~~~---------------------------------------------------------------- 304 (524)
T 2j04_B 289 VAEFDLTDPEVPSFYD---------------------------------------------------------------- 304 (524)
T ss_dssp EEEEETTBCSSCSEEE----------------------------------------------------------------
T ss_pred EEEEECCCCCCceEEe----------------------------------------------------------------
Confidence 9999986541100000
Q ss_pred CCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCcccc
Q 001318 709 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 788 (1101)
Q Consensus 709 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~ 788 (1101)
T Consensus 305 -------------------------------------------------------------------------------- 304 (524)
T 2j04_B 305 -------------------------------------------------------------------------------- 304 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCCCCCCCCeeEE--EEecCC-CEEEEEe-CCeEEEEECCCCceeeEecCCCC--CeEEEEEecCCCcEE
Q 001318 789 PPSGIMMTNDVTDSNPEEAVPCF--ALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNII 862 (1101)
Q Consensus 789 ~~~g~~~~~~~~~~~~~~~i~~~--~~s~dg-~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~l 862 (1101)
. +|...|.++ +|++++ .+||+++ |++|+|||+.++++..++.+|.. .|.+++|+| +++.+
T Consensus 305 -----------~--~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l 370 (524)
T 2j04_B 305 -----------Q--VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSY 370 (524)
T ss_dssp -----------E--CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEE
T ss_pred -----------e--cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeE
Confidence 0 166677777 467777 7889988 89999999998888777776653 588999999 88899
Q ss_pred EEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCC--CCCC
Q 001318 863 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--PTAQ 940 (1101)
Q Consensus 863 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~ 940 (1101)
++++.|++|++||+.++.++..+.+|.+.|++|+|||+|++|++|+.|++|++||+..+. +....... ....
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~------~~~~~~~~~~~~~~ 444 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL------LHGIKNSSATQKSL 444 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST------TTCC------CCCC
T ss_pred EEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh------ccccccCccceeee
Confidence 999999999999999998888899999999999999999999999999999999986531 11111000 0012
Q ss_pred CCeEEEEcCCCcEEEEEeCCeEEEEEcC-CceeeeeccCCCCCCCeeEEEEcCCCC---EEEEEEcCCeEEEEEcCC
Q 001318 941 SDTRVQFHQDQIHFLVVHETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 941 ~v~~~~~s~dg~~la~~~d~~v~vwd~~-~~~~~~~~~~~~h~~~i~~l~~spdg~---~l~s~s~dg~v~vwd~~~ 1013 (1101)
.+..++|+|+|..+.... .+.+|+.. ++.++..+. +|...|.+++|+|++. +|++|+.||+|+||++.-
T Consensus 445 ~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 445 RLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEECBCCSSSCEEEECC--CCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEEeccCCCCCeEEccC--CceecccccCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 456899999998553322 23344332 455555554 8899999999999964 999999999999999763
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=323.75 Aligned_cols=253 Identities=17% Similarity=0.244 Sum_probs=197.0
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccc-c-CCCCCeEEEEEec
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV-K-DPGVSVNRVIWSP 417 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~l~~sp 417 (1101)
.+.+|.+.|++++|+|+ +||+|+.|++|+|||+.++...... .+ . +|...|.+++|+|
T Consensus 9 ~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~v~~sp 68 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRSVAWRP 68 (330)
T ss_dssp EEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEEEEECT
T ss_pred eeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEEEEECC
Confidence 34469999999999998 5999999999999999875321110 12 3 4999999999999
Q ss_pred CCCeEEEEEcCCeEEEEEccCCc----eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC----CceE
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----GAKQ 489 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~----~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~----~~~~ 489 (1101)
++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. .+++
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 99999999999999999996432 1233446889999999999999999 899999999999999943 2567
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC--CceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
..+.+|...|.+++|++ ++.+|++++.|++|++||.... .....+..|...|.+++|+|++.
T Consensus 147 ~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------------- 210 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG-------------- 210 (330)
T ss_dssp EEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS--------------
T ss_pred EEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC--------------
Confidence 88999999999999964 5679999999999999998765 34556667777666666666521
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCC--------ceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSV--------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+.++++++.|++|++||+..+ .....+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus 211 -----~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 211 -----VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp -----SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred -----eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 347999999999999998764 23333332 144579999999765 8999999999999998655
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=366.85 Aligned_cols=494 Identities=13% Similarity=0.069 Sum_probs=355.5
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecC------CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCC
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 408 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (1101)
......+..|...|.+++|||||++ ||+++.+ ..|.+||+.+++.. .+..|..
T Consensus 42 gg~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~--------------------~lt~~~~ 100 (1045)
T 1k32_A 42 SGSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIK--------------------RITYFSG 100 (1045)
T ss_dssp TCCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEE--------------------ECCCCCE
T ss_pred CCcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeE--------------------EcccCCC
Confidence 3455667779999999999999997 5555432 37999999887643 2677888
Q ss_pred Ce-------EEEEEecCCCeEEEEEcC------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC-
Q 001318 409 SV-------NRVIWSPDGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD- 474 (1101)
Q Consensus 409 ~V-------~~l~~spdg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~- 474 (1101)
.+ .+++|||||+++++++.+ ..|.+|++.+++... +..+ ....++|+| | ++++++.
T Consensus 101 ~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~ 170 (1045)
T 1k32_A 101 KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNT 170 (1045)
T ss_dssp EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESC
T ss_pred cccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccC
Confidence 88 999999999977777754 468888888876432 3333 345678999 6 3666542
Q ss_pred -----------CCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC-CceeeecCCCCc
Q 001318 475 -----------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRW 542 (1101)
Q Consensus 475 -----------d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~ 542 (1101)
+...++|....+.....+.+|...+.++.|+ ++ .++++++.|+.+.+|.++.. .....+..+. .
T Consensus 171 ~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s--~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~ 246 (1045)
T 1k32_A 171 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV--GH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-D 246 (1045)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE--TT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-S
T ss_pred CCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe--CC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-C
Confidence 3456677544445556678999999999985 34 57778888999999987642 2222232222 1
Q ss_pred eeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC---------CCCCcCeEEE
Q 001318 543 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG---------GLPASPRIRF 613 (1101)
Q Consensus 543 v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~ 613 (1101)
+. ..+|+|+|++++.+ .++.|++|++...+ +..+..+. +...+.+++|
T Consensus 247 ~~---------------------~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~ 303 (1045)
T 1k32_A 247 YY---------------------PRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDF 303 (1045)
T ss_dssp SC---------------------EEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEE
T ss_pred cc---------------------eeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeee
Confidence 22 33555555667766 48999999995443 44544321 1125889999
Q ss_pred c-cCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCC
Q 001318 614 N-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 692 (1101)
Q Consensus 614 s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1101)
+ |||++|++++ ++.+++|+..++ .... +.
T Consensus 304 S~pdG~~la~~~-~~~i~~~~~~~~-~~~~-~~----------------------------------------------- 333 (1045)
T 1k32_A 304 SPLDGDLIAFVS-RGQAFIQDVSGT-YVLK-VP----------------------------------------------- 333 (1045)
T ss_dssp EECGGGCEEEEE-TTEEEEECTTSS-BEEE-CS-----------------------------------------------
T ss_pred cCCCCCEEEEEE-cCEEEEEcCCCC-ceEE-cc-----------------------------------------------
Confidence 9 9999999888 788999987655 1110 00
Q ss_pred CccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc-ceEEEEEcCCCceEEeeecCceEE-eeecccc
Q 001318 693 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT-KISRLIFTNSGNAILALASNAIHL-LWKWQRT 770 (1101)
Q Consensus 693 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~i~-iw~~~~~ 770 (1101)
.+.. .+..++|+ ||+.++.++.++.+. +|++.
T Consensus 334 -------------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-- 367 (1045)
T 1k32_A 334 -------------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-- 367 (1045)
T ss_dssp -------------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT--
T ss_pred -------------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC--
Confidence 1333 67788999 999898888877776 77652
Q ss_pred ccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCe
Q 001318 771 ERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAA 849 (1101)
Q Consensus 771 ~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i 849 (1101)
++.... +. ++...+..++|+|||++|++++ ++.|++||+.+++....+.+|...+
T Consensus 368 --------------------~~~~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v 423 (1045)
T 1k32_A 368 --------------------TGKAEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI 423 (1045)
T ss_dssp --------------------TCCEEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC
T ss_pred --------------------CCCceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc
Confidence 222211 11 2677899999999999999998 7899999999999888887898999
Q ss_pred EEEEEecCCCcEEEEEeccC----------eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 850 TFLAFHPQDNNIIAIGMDDS----------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 850 ~~l~~sp~d~~~lasg~~dg----------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
.+++||| ||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+..
T Consensus 424 ~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 424 TDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred cceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 9999999 899998887654 99999999887 67788888889999999999999999998888888754
Q ss_pred Ccccccc---ee--eec-----------------------CCCC-------CCCCCCCeEEEEcCCCcEEEE--------
Q 001318 920 GWEKQKN---RF--LQI-----------------------PTGR-------TPTAQSDTRVQFHQDQIHFLV-------- 956 (1101)
Q Consensus 920 ~~~~~~~---~~--~~~-----------------------~~~~-------~~~~~~v~~~~~s~dg~~la~-------- 956 (1101)
....... .. +.. ..+. ......+..++|+|||+++++
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~ 581 (1045)
T 1k32_A 502 VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA 581 (1045)
T ss_dssp SSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHH
T ss_pred ccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCccc
Confidence 3221000 00 000 0000 001245788999999997774
Q ss_pred ----E--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 001318 957 ----V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 957 ----~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
+ ....+.+||+.+++..... ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 582 ~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 582 AYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 2457899999988764332 468899999999999998866 89999998887
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=335.25 Aligned_cols=317 Identities=19% Similarity=0.310 Sum_probs=268.2
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.|++|++|
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence 47789887643 366679999999999999999999988665 678999999999997 44 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
|+.+++.+..+.+|...|.++.|+ +..+++|+.||+|++||+.+++....+..+...+.++.+
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~------------- 247 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY------------- 247 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-------------
T ss_pred ECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-------------
Confidence 999999999999999999999873 258999999999999999998887777777776666665
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
+++++++++.||.|++||+.+++.+..+..+. ..|.+++| ++.++++++.||.|++||+.++ +.+
T Consensus 248 ----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~ 312 (445)
T 2ovr_B 248 ----------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCI 312 (445)
T ss_dssp ----------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred ----------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEE
Confidence 23469999999999999999999999987554 46888888 8899999999999999998765 211
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..+.
T Consensus 313 ~~~~---------------------------------------------------------------------------- 316 (445)
T 2ovr_B 313 HTLT---------------------------------------------------------------------------- 316 (445)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEc----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
T Consensus 317 -------------------------------------------------------------------------------- 316 (445)
T 2ovr_B 317 -------------------------------------------------------------------------------- 316 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC---CCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+|...+.++.+ +++++++++ ||.|++||+.+++.+..+.+ |...|++++|++ ++|++|+.||.|++||+.
T Consensus 317 -~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 317 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETT
T ss_pred -CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECC
Confidence 03344555544 456888888 89999999999999988876 788899999964 699999999999999999
Q ss_pred cceEeeee-----cCcccCeeEEEEcCCCCEEEEEeCCCc----eEEEeCCC
Q 001318 878 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG 920 (1101)
Q Consensus 878 ~~~~~~~l-----~~h~~~V~~l~~s~dg~~l~s~s~D~~----v~iwd~~~ 920 (1101)
+++.+..+ .+|.+.|++++|+|++.+|++++.||+ |.|||++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99988887 578899999999999999999999998 99999876
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=324.36 Aligned_cols=292 Identities=13% Similarity=0.166 Sum_probs=225.8
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
.+|...|.+++|+++ +|++++.|+.|++|++..+.. .... .+...+|...|.+++|+
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------~~~~-~~~~~~h~~~v~~v~~s 67 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------TLID-VLDETAHKKAIRSVAWR 67 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------EEEE-EECTTCCCSCEEEEEEC
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------EEEE-EEecCCccCCEEEEEEC
Confidence 348899999999988 899999999999999743210 0111 01112388999999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCC-------CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec----ceEe
Q 001318 815 KNDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVK 882 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~----~~~~ 882 (1101)
|++++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++++||+|+.|++|++||+.. .+++
T Consensus 68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 9999999999 99999999853 356678899999999999999 899999999999999999943 3577
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC--CcEEEE-EeC
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV-VHE 959 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~-~~d 959 (1101)
..+.+|...|++++|+|++.+|++++.|++|++||+.++. ..++....+|.. .|.+++|+|+ +.+|++ +.|
T Consensus 147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEG---TVWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSS---CEEEEEECCSSSSCEEEEEETT
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCC---cEEEEEecCCCCeeEEEEEeCC
Confidence 8899999999999999999999999999999999987642 234455666653 8999999999 778888 689
Q ss_pred CeEEEEEcCCc--------eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee--eeecCCCcccCCC
Q 001318 960 TQLAIFETTKL--------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAG 1029 (1101)
Q Consensus 960 ~~v~vwd~~~~--------~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~ 1029 (1101)
+.|++||+.++ .+...+. ..|...|++++|++++ +|++++.||+|+|||..+++. +.... .+
T Consensus 221 ~~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~~ 292 (330)
T 2hes_X 221 STVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------LC 292 (330)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------CT
T ss_pred CeEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------cc
Confidence 99999999765 3333332 2489999999999765 889999999999999988743 32221 13
Q ss_pred CCCCCccceEEEEeCC-CCCEEEEEecCCcEEEEeccC
Q 001318 1030 VSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1030 ~~~~~v~~~~i~~~~~-d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
|....+. +++|+|. ++++|++|+.||+|++|++.+
T Consensus 293 h~~~~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEIN--VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccceEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 3332355 8999985 578999999999999999865
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=350.06 Aligned_cols=361 Identities=9% Similarity=0.034 Sum_probs=248.5
Q ss_pred CcceeecccCCCCcEEEEEecCC---------CeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccC
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQ---------QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 405 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg---------~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1101)
..+...++.+.+.|.+|+|+|++ + +||+|+.++..
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~----------------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD----------------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC-----------------------------------
Confidence 34455567789999999999987 5 58888755310
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceee-eeeeeccccCCeeEEEEcCC------CCeEEEEEecCCCcE
Q 001318 406 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHP------NKQLCVITCGDDKTI 478 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~V~~~~~s~d------~~~~~l~s~~~d~~i 478 (1101)
-..+|++++||+++.|++|+|||+.+++... ...++.+|.+.|.+++|+|+ +. +|++++.|++|
T Consensus 167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 0136899999999999999999998876432 12346678899999999997 45 79999999999
Q ss_pred EEEeCCCCce-----------EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCc-eeeecCCCCceeEE
Q 001318 479 KVWDATNGAK-----------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTM 546 (1101)
Q Consensus 479 ~iwd~~~~~~-----------~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~ 546 (1101)
+|||+.++.. ..++.+|...|++++|++ + ..|++|+.||+|++||++++.. ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999987642 347889999999999964 2 4899999999999999987643 33466666666665
Q ss_pred EEccCCceEEeccccCceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC
Q 001318 547 AYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 625 (1101)
Q Consensus 547 ~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 625 (1101)
++ .+++++ .+|++++.|++|++||+++++++..+..+.....|.+++|+|+++.+++++.
T Consensus 315 ~~-------------------~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~ 375 (524)
T 2j04_B 315 ST-------------------AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG 375 (524)
T ss_dssp EE-------------------ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECS
T ss_pred EE-------------------EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCC
Confidence 21 233444 5799999999999999999887766655433234789999999999999999
Q ss_pred CCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCcccee
Q 001318 626 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 705 (1101)
Q Consensus 626 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 705 (1101)
|++|++||+.++ .....+
T Consensus 376 d~tv~lwd~~~~-~~~~~l------------------------------------------------------------- 393 (524)
T 2j04_B 376 ASSLRAVPSRAA-FAVHPL------------------------------------------------------------- 393 (524)
T ss_dssp SSEEEEEETTCT-TCCEEE-------------------------------------------------------------
T ss_pred CCcEEEEECccc-ccceee-------------------------------------------------------------
Confidence 999999998776 222211
Q ss_pred eccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCc
Q 001318 706 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 785 (1101)
Q Consensus 706 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 785 (1101)
.+|...|.+++|+|+|+.|++++.|+.|++|++....
T Consensus 394 -----------------------------~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-------------- 430 (524)
T 2j04_B 394 -----------------------------VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL-------------- 430 (524)
T ss_dssp -----------------------------EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST--------------
T ss_pred -----------------------------ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh--------------
Confidence 1277899999999999999999999999999863210
Q ss_pred cccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECC-CCceeeEecCCCCCeEEEEEecCC---CcE
Q 001318 786 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQD---NNI 861 (1101)
Q Consensus 786 lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d---~~~ 861 (1101)
+....+. ....+...+.+++|+|+++.+.. ++.+.+|+.. ++.++.++.+|...|.+|+|+| + +.+
T Consensus 431 -~~~~~~~------~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~ 500 (524)
T 2j04_B 431 -LHGIKNS------SATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKC 500 (524)
T ss_dssp -TTCC------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------CCCSCCCEEECC-STTTTTE
T ss_pred -ccccccC------ccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecCCCceEEEEECCC-CCCccHH
Confidence 0000000 00002235778999999985532 2233444433 4677888999999999999999 6 459
Q ss_pred EEEEeccCeEEEEEee
Q 001318 862 IAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 862 lasg~~dg~v~vwd~~ 877 (1101)
||+|+.||.|+||++.
T Consensus 501 lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 501 YAFSNSAGLLTLEYLS 516 (524)
T ss_dssp EEEECTTSEEEEEECS
T ss_pred HHhhccCceEEEEEcc
Confidence 9999999999999986
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=349.34 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=254.1
Q ss_pred ccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccC---CceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 403 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 403 ~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~---~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
..+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........+ +|...|.+++|+|+++ +|++|+.|++|
T Consensus 59 ~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i 135 (437)
T 3gre_A 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQI 135 (437)
T ss_dssp CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEE
Confidence 388999999999999 999999999999999999987 5433222233 5999999999999999 79999999999
Q ss_pred EEEeCC---CCceEEEecC------------cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC--CCC
Q 001318 479 KVWDAT---NGAKQYIFEG------------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGR 541 (1101)
Q Consensus 479 ~iwd~~---~~~~~~~~~~------------h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~ 541 (1101)
++||+. +++.+..+.+ +...+.++.+...+++.+|++++.||.|++||+++.+....+.. |..
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 999995 6665554432 44556666655667889999999999999999998777766655 444
Q ss_pred ceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc----cCC
Q 001318 542 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN----KDG 617 (1101)
Q Consensus 542 ~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~~~ 617 (1101)
.|. +++|+|++++|++++.||.|++||+++++++..+... +...|.+++|+ +++
T Consensus 216 ~v~---------------------~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~s~~~ 273 (437)
T 3gre_A 216 AVS---------------------SICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-DHAPITHVEVCQFYGKNS 273 (437)
T ss_dssp CEE---------------------EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-TCEEEEEEEECTTTCTTE
T ss_pred ceE---------------------EEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-CCCceEEEEeccccCCCc
Confidence 444 4555555568999999999999999999999888632 22368899665 468
Q ss_pred CEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCcccc
Q 001318 618 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS 697 (1101)
Q Consensus 618 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1101)
.+|++++.||.|++||+.++ +....+.+|...
T Consensus 274 ~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~----------------------------------------------- 305 (437)
T 3gre_A 274 VIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQ----------------------------------------------- 305 (437)
T ss_dssp EEEEEESTTEEEEEEETTTT-EEEEEEESSSSC-----------------------------------------------
T ss_pred cEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCC-----------------------------------------------
Confidence 89999999999999999887 555544443221
Q ss_pred ccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCc
Q 001318 698 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 777 (1101)
Q Consensus 698 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 777 (1101)
+..+.|+|+++.+. +.
T Consensus 306 -------------------------------------------~~~~~~~~~~~~l~----~~----------------- 321 (437)
T 3gre_A 306 -------------------------------------------PSMEHFLPIEKGLE----EL----------------- 321 (437)
T ss_dssp -------------------------------------------CCGGGGSCBCSSGG----GC-----------------
T ss_pred -------------------------------------------Cccceecccccccc----cc-----------------
Confidence 12222333332210 00
Q ss_pred eeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCC---CeEEEE
Q 001318 778 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP---AATFLA 853 (1101)
Q Consensus 778 ~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~---~i~~l~ 853 (1101)
.+.+..|...|.+++|+ ++++|++++ |+.|++||+.+++....+.+|.. .+....
T Consensus 322 --------------------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 380 (437)
T 3gre_A 322 --------------------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQ 380 (437)
T ss_dssp --------------------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEE
T ss_pred --------------------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEE
Confidence 01111277889999999 888999998 99999999999999999887643 455666
Q ss_pred EecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCC--CCEEEEEeCCCceEEEe
Q 001318 854 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 854 ~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~D~~v~iwd 917 (1101)
+++ ...+++.. |+............|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 381 ~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 381 VTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 776 55554433 333444455666779999999999998 78999999999999995
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=321.10 Aligned_cols=211 Identities=20% Similarity=0.300 Sum_probs=178.9
Q ss_pred cccCCCCCeEEEEEecC-CCeEEEEEcCCeEEEEEccCCcee--eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 402 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
+|.||.+.|++|+|+|+ +++||||+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 48899999999999997 689999999999999999876532 23446889999999999999999 89999999999
Q ss_pred EEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCce-eeecCCCCceeEEEEccCCceEEe
Q 001318 479 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 479 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
++|+...+........+...+..+.+. +++.+|++++.|+.+++||....... .....+...+..++|++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 184 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFS--SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---- 184 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS----
T ss_pred eEEeecccceeeeecCCCCceeEEEEe--ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC----
Confidence 999999999988888888888887764 55579999999999999998765433 23445566666666666553
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
...+++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++++|++++.||.|++||+.+.
T Consensus 185 ---------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 185 ---------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp ---------------SCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ---------------CcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 2467889999999999999999999988664 47999999999999999999999999998765
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=321.76 Aligned_cols=307 Identities=18% Similarity=0.260 Sum_probs=247.8
Q ss_pred eeecc-cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 338 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 338 ~~~~~-~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
+..+| +|.+.|++++|+|++..+|+||+.|++|+|||+.+.+....... ..+.+|...|.+++|+
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~--------------~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--------------RALRGHSHFVSDVVIS 95 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE--------------EEECCCSSCEEEEEEC
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee--------------EEEeCCCCCEEEEEEC
Confidence 33344 69999999999998544699999999999999987654332211 2478999999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE-EEecCc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGH 495 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h 495 (1101)
|||++|++++.|+.|++|+...+.... ....+...+..+.+++++. ++++++.|+.+++||+...... ..+.+|
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~ 170 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESH 170 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred CCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence 999999999999999999999876554 4556888999999999999 7999999999999998776554 445789
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
...+..++|.+.....++++++.|+.|++||+.+.+....+..|...|.+++|+|++ ++
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~---------------------~~ 229 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG---------------------SL 229 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC---------------------CE
Confidence 999999999888777889999999999999999888777777777766666665555 57
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccC
Q 001318 576 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 655 (1101)
Q Consensus 576 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 655 (1101)
|++++.|+.|++||+.+.+.+..+..+. .+.+++|+|++.+++ ++.|+.|++||+.++ ..+..+..+...
T Consensus 230 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~~----- 299 (340)
T 4aow_A 230 CASGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLC-AATGPSIKIWDLEGK-IIVDELKQEVIS----- 299 (340)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEEE-EEETTEEEEEETTTT-EEEEEECCC--------
T ss_pred EEEEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCceee-ccCCCEEEEEECCCC-eEEEecccccee-----
Confidence 9999999999999999999998887553 589999999887655 556899999998776 333322211000
Q ss_pred CCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcc
Q 001318 656 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 735 (1101)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 735 (1101)
....
T Consensus 300 ----------------------------------------------------------------------------~~~~ 303 (340)
T 4aow_A 300 ----------------------------------------------------------------------------TSSK 303 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------eecc
Confidence 0002
Q ss_pred ccccceEEEEEcCCCceEEeeecCceEEeeecccc
Q 001318 736 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 770 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 770 (1101)
+|...|.+++|+|+|++|++++.||.|+||++.++
T Consensus 304 ~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 304 AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 37789999999999999999999999999998543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=330.30 Aligned_cols=320 Identities=15% Similarity=0.272 Sum_probs=265.8
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
...+|.+.|.. +++++|++ +++|+.||.|++||+.+++.+.. +.+|.+.|.+++|+ +
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~-l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~ 169 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--D 169 (445)
T ss_dssp EEECSTTSCEE-EEEEETTE-EEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--T
T ss_pred EecccCCCcEE-EEEEcCCE-EEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--C
Confidence 34568887643 35667885 99999999999999999987763 78999999999998 6
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|...|
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v 242 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred CEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence 799999999999999999987665 678999999999995 45 69999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.+++| ++.++++++.||.|++||+++.+....+..+...+.++.+ ++.+++++
T Consensus 243 ~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~l~~~ 295 (445)
T 2ovr_B 243 RCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-----------------------DGIHVVSG 295 (445)
T ss_dssp EEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-----------------------CSSEEEEE
T ss_pred EEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-----------------------CCCEEEEE
Confidence 99987 4578999999999999999988877777777776666665 33579999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
+.|+.|++||+.+++.+..+..+.. .+.++.+ +++++++++.||.|++||+.++ +.+..+.++
T Consensus 296 ~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~------------ 358 (445)
T 2ovr_B 296 SLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGP------------ 358 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECST------------
T ss_pred eCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEccC------------
Confidence 9999999999999999999876543 5655555 6789999999999999998765 222111100
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 739 (1101)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
..|...|.+++++ +++
T Consensus 359 --------------------------------------------------------------~~~~~~v~~~~~~--~~~ 374 (445)
T 2ovr_B 359 --------------------------------------------------------------NKHQSAVTCLQFN--KNF 374 (445)
T ss_dssp --------------------------------------------------------------TSCSSCEEEEEEC--SSE
T ss_pred --------------------------------------------------------------CCCCCCEEEEEEC--CCE
Confidence 0155667777774 568
Q ss_pred EEEEe-CCeEEEEECCCCceeeEe-----cCCCCCeEEEEEecCCCcEEEEEeccCe----EEEEEeec
Q 001318 820 VMSAS-GGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS----IQIYNVRV 878 (1101)
Q Consensus 820 la~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~----v~vwd~~~ 878 (1101)
+++++ ||.|++||+.+++.+..+ .+|.+.|.+++|+| ++.++|+|+.||+ |.|||+..
T Consensus 375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 88888 899999999999888887 46788899999999 9999999999997 99999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=346.93 Aligned_cols=386 Identities=14% Similarity=0.196 Sum_probs=282.8
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCCceeeeeeee-ccccCCeeEEEEcC-CCCeEEEEEecCCCcEEEEeCCC---Cc-
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATN---GA- 487 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l-~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~---~~- 487 (1101)
.|+|+++.+++++ .|+.. ++.+. .+ .+|.+.|++++|+| +++ +|++|+.|++|+|||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred hcCCccccccccc------ccccc-ceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence 4688888888765 37744 44444 46 78999999999999 888 899999999999999877 43
Q ss_pred --eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecC---CCCceeeecCCCCceeEEEEccCCceEEeccccC
Q 001318 488 --KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 562 (1101)
Q Consensus 488 --~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 562 (1101)
....+ +|...|.+++|+ +++.+|++++.||+|++||+. .+........+ .+..+.+++++ ...
T Consensus 102 ~~~~~~~-~h~~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------~~~ 169 (437)
T 3gre_A 102 YSSSLTY-DCSSTVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------KNE 169 (437)
T ss_dssp CSCSEEE-ECSSCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------SCC
T ss_pred cceeeec-cCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------ccc
Confidence 23444 499999999996 466899999999999999995 44444444433 67777777643 122
Q ss_pred ceeEEE--EcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccc
Q 001318 563 SLGVVQ--FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 563 ~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
.+.++. ++++++++++++.|+.|++||+++++.+..+..+.+...|.+++|+|++++|++|+.||.|++||+.++ +.
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~ 248 (437)
T 3gre_A 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VL 248 (437)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EE
T ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cE
Confidence 455555 668899999999999999999999999999987434557999999999999999999999999998765 22
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
+..+. +
T Consensus 249 ~~~~~------------------------------------------------------------------------~-- 254 (437)
T 3gre_A 249 IRSWS------------------------------------------------------------------------F-- 254 (437)
T ss_dssp EEEEB------------------------------------------------------------------------C--
T ss_pred EEEEe------------------------------------------------------------------------c--
Confidence 22110 0
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
.|...|.+++++|
T Consensus 255 ---------------~~~~~v~~~~~~~---------------------------------------------------- 267 (437)
T 3gre_A 255 ---------------GDHAPITHVEVCQ---------------------------------------------------- 267 (437)
T ss_dssp ---------------TTCEEEEEEEECT----------------------------------------------------
T ss_pred ---------------CCCCceEEEEecc----------------------------------------------------
Confidence 0222333333322
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
+|++++++|++++ ||.|++||+.+++++..+.+|...+..+.|+| +++.+ .+.
T Consensus 268 -----------~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~---------- 321 (437)
T 3gre_A 268 -----------FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EEL---------- 321 (437)
T ss_dssp -----------TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGC----------
T ss_pred -----------ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccc----------
Confidence 2335677888988 89999999999999999999999999999999 66555 111
Q ss_pred eEeeeecC--cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 880 EVKSKLKG--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 880 ~~~~~l~~--h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
.+.+ |...|++++|+ ++++|++++.|+.|++||+.+++.. ....++...........++++..+++..
T Consensus 322 ----~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 322 ----NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS-----KAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp ----CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC-----EEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred ----eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc-----eEEecccccCceEEEEEeecceEEEEEe
Confidence 1444 99999999999 8899999999999999999987643 2223332222345566666666555443
Q ss_pred eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCC--CCEEEEEEcCCeEEEEE
Q 001318 958 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 958 ~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spd--g~~l~s~s~dg~v~vwd 1010 (1101)
|+.......... ..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 392 -------~~~~~~~~~~~~--~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 -------MKRTSTHSVDDS--LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred -------cccccccccCcc--cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 223333333322 368999999999998 78999999999999995
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=329.25 Aligned_cols=320 Identities=15% Similarity=0.246 Sum_probs=262.8
Q ss_pred eecccCCCCc-EEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 339 TRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 339 ~~~~~h~~~v-~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
....+|...| .|+.| +++ ++++|+.||.|++||+.+++.+.. +.+|.+.|++++|+|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~ 172 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAH 172 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECS
T ss_pred EEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcC
Confidence 3455688775 66666 456 599999999999999999987763 779999999999999
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC--CCCeEEEEEecCCCcEEEEeCCCCce-------
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK------- 488 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~------- 488 (1101)
++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|++|++||+.++..
T Consensus 173 ~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 173 GG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp TT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------
T ss_pred CC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccccccc
Confidence 88 99999999999999999987665 6789999999999995 555 899999999999999988753
Q ss_pred ----------------EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCC
Q 001318 489 ----------------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 552 (1101)
Q Consensus 489 ----------------~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 552 (1101)
+..+.+|...|.++. +++.++++++.||.|++||+.+.+....+..|...+.+++|++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 322 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred CCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence 556788999998874 344799999999999999999888777777776666666655554
Q ss_pred ceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001318 553 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 632 (1101)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 632 (1101)
+++++++.||.|++||+.+++.+..+..|.. .|.+++|+ +++|++++.||.|++|
T Consensus 323 ---------------------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 323 ---------------------KRCISASMDTTIRIWDLENGELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGW 377 (464)
T ss_dssp ---------------------TEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred ---------------------CEEEEEeCCCcEEEEECCCCcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEE
Confidence 5799999999999999999999999986644 68888887 6899999999999999
Q ss_pred EecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCc
Q 001318 633 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 712 (1101)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 712 (1101)
|+.++.....
T Consensus 378 d~~~~~~~~~---------------------------------------------------------------------- 387 (464)
T 3v7d_B 378 DANDYSRKFS---------------------------------------------------------------------- 387 (464)
T ss_dssp ETTTCCEEEE----------------------------------------------------------------------
T ss_pred ECCCCceeee----------------------------------------------------------------------
Confidence 9865411000
Q ss_pred ceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCc
Q 001318 713 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 792 (1101)
Q Consensus 713 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g 792 (1101)
.
T Consensus 388 -------------------------------------------~------------------------------------ 388 (464)
T 3v7d_B 388 -------------------------------------------Y------------------------------------ 388 (464)
T ss_dssp -------------------------------------------E------------------------------------
T ss_pred -------------------------------------------e------------------------------------
Confidence 0
Q ss_pred cccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEeccCeE
Q 001318 793 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSI 871 (1101)
Q Consensus 793 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v 871 (1101)
.+...+..++|+++++++++++||.|++||+.+++.+.. +.+|...|.+++|+ ++.++++++.||.+
T Consensus 389 ----------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 389 ----------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQS 456 (464)
T ss_dssp ----------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEE
T ss_pred ----------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeE
Confidence 033445678889999999999999999999999999876 67788899999998 46778888888877
Q ss_pred EEEEe
Q 001318 872 QIYNV 876 (1101)
Q Consensus 872 ~vwd~ 876 (1101)
.+|-+
T Consensus 457 ~i~~l 461 (464)
T 3v7d_B 457 FLEIL 461 (464)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=321.44 Aligned_cols=302 Identities=16% Similarity=0.247 Sum_probs=254.0
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.+|.+.|++++|+|+|++|++++.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 588999999999999999999999999999999999988665 6788999999999999999 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC-----CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEE
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
|+.+++.+..+. |...|.+++|+ +++.++++++.+ |.|++||+........+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~-------------------- 158 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFS--PCGNYFLAILDNVMKNPGSINIYEIERDSATHEL-------------------- 158 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEEC--TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------------------
T ss_pred ECCCCcEEEEee-cCCCeEEEEEc--cCCCEEEEecCCccCCCCEEEEEEecCCccceee--------------------
Confidence 999999999888 88899999985 566899999998 99999998764332110
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
.. .....+..+..+.....+.+++|+|++++|++++.||.|++||+.+
T Consensus 159 --------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 159 --------------------TK------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp --------------------EE------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred --------------------cc------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 00 0112223333343344689999999999999999999999999865
Q ss_pred ccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee
Q 001318 637 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 716 (1101)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 716 (1101)
+......+.
T Consensus 207 ~~~~~~~~~----------------------------------------------------------------------- 215 (369)
T 3zwl_B 207 NYEYVDSID----------------------------------------------------------------------- 215 (369)
T ss_dssp TTEEEEEEE-----------------------------------------------------------------------
T ss_pred CcEeEEEEe-----------------------------------------------------------------------
Confidence 311111000
Q ss_pred eccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccc
Q 001318 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~ 796 (1101)
T Consensus 216 -------------------------------------------------------------------------------- 215 (369)
T 3zwl_B 216 -------------------------------------------------------------------------------- 215 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC------
Q 001318 797 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------ 869 (1101)
Q Consensus 797 ~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------ 869 (1101)
.|...|.+++|+|++++|++++ |+.|++||+.+++.+..+. +...+.+++|+| +++++++++.++
T Consensus 216 ------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 287 (369)
T 3zwl_B 216 ------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTT 287 (369)
T ss_dssp ------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC------
T ss_pred ------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEE
Confidence 0566688888888888888888 8999999999988888887 777899999999 899999999888
Q ss_pred --------eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcc
Q 001318 870 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 922 (1101)
Q Consensus 870 --------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~ 922 (1101)
.+++||+.+++.+..+.+|...|++++|+|++++|++++.||+|++|+++.+.
T Consensus 288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 89999999999999999999999999999999999999999999999998754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=350.27 Aligned_cols=259 Identities=21% Similarity=0.298 Sum_probs=215.0
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+.+|.+.|++++|+|++..+|+||+.|++|+|||+.+....... ....+.+|...|.+++|+|||+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECTTSS
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECCCCC
Confidence 44699999999999987667999999999999999865432110 1114789999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe---cCccc
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEA 497 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h~~ 497 (1101)
+|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .+|..
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999999999999987665 5789999999999999999 7999999999999997655443332 46899
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
.|.+++|+++.....+++++.|++|++||+++......+..|...|.+++|+|++ ++|+
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg---------------------~~l~ 577 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG---------------------SLCA 577 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------SEEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC---------------------CEEE
Confidence 9999999876655789999999999999999887777777777666666665555 5899
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccc
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+++.||.|++||+.+++.+..+..+ ..+.+++|+|++.+|++++ ++.|++||+.++ ..+..+
T Consensus 578 sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~ 639 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDL 639 (694)
T ss_dssp EEETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEE
T ss_pred EEeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhh
Confidence 9999999999999999988777643 3589999999999888776 566999999887 444443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=328.97 Aligned_cols=318 Identities=14% Similarity=0.191 Sum_probs=224.2
Q ss_pred cccCCCCCeEEEEEecC----CCeEEEEEcCCeEEEEEccCCceeeeeeeec--cccCCeeEEEEcCC----CCeEEEEE
Q 001318 402 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHP----NKQLCVIT 471 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~V~~~~~s~d----~~~~~l~s 471 (1101)
+..+|.+.|++++|+|+ ...+++++.++.|++||+.+++.+.....+. .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 46799999999999994 5567777777899999999887765443333 36788999999999 45 7999
Q ss_pred ecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee---cCCCCceeEEEE
Q 001318 472 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY 548 (1101)
Q Consensus 472 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 548 (1101)
|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++++....+ ..+...
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------ 163 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE------ 163 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC------
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc------
Confidence 999999999999999999999999999999999651 5579999999999999999875544333 222222
Q ss_pred ccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001318 549 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 628 (1101)
Q Consensus 549 s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 628 (1101)
|.+++|+|++++|++++.||.
T Consensus 164 -----------------------------------------------------------v~~~~~~~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 164 -----------------------------------------------------------VLSADYDLLGEKIMSCGMDHS 184 (366)
T ss_dssp -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------------eeEEEECCCCCEEEEecCCCC
Confidence 444555555555555555566
Q ss_pred EEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeecc
Q 001318 629 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 708 (1101)
Q Consensus 629 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 708 (1101)
|++||+.++ +....+.... .+.+. +..+....
T Consensus 185 i~i~d~~~~-~~~~~~~~~~------------~~~~~-----------------------------------~~~~~~~~ 216 (366)
T 3k26_A 185 LKLWRINSK-RMMNAIKESY------------DYNPN-----------------------------------KTNRPFIS 216 (366)
T ss_dssp EEEEESCSH-HHHHHHHHHH------------TCCGG-----------------------------------GCSSCCCC
T ss_pred EEEEECCCC-ccccccceeE------------EecCC-----------------------------------CCcccccc
Confidence 666655544 2222111100 00000 00000000
Q ss_pred CCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCcccc
Q 001318 709 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 788 (1101)
Q Consensus 709 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~ 788 (1101)
.......+..
T Consensus 217 -------------------------------------------------~~~~~~~~~~--------------------- 226 (366)
T 3k26_A 217 -------------------------------------------------QKIHFPDFST--------------------- 226 (366)
T ss_dssp -------------------------------------------------EEECCCSEEE---------------------
T ss_pred -------------------------------------------------eeeccCcccc---------------------
Confidence 0000000000
Q ss_pred CCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce--------------eeEecCCCCCeEEEE
Q 001318 789 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--------------MATFMPPPPAATFLA 853 (1101)
Q Consensus 789 ~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~--------------~~~~~~~~~~i~~l~ 853 (1101)
. ..|...|.+++|+ ++++++++ |+.|++||+.++.. +..+..|...|.+++
T Consensus 227 ----------~--~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (366)
T 3k26_A 227 ----------R--DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292 (366)
T ss_dssp ----------C--SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred ----------c--cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence 0 0155566666666 55666666 66666666655433 667888999999999
Q ss_pred EecCC--CcEEEEEeccCeEEEEEeecce----EeeeecCc--ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 854 FHPQD--NNIIAIGMDDSSIQIYNVRVDE----VKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 854 ~sp~d--~~~lasg~~dg~v~vwd~~~~~----~~~~l~~h--~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
|+| + +++|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 293 ~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 293 FSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999 8 9999999999999999999875 34477777 79999999999999999999999999999853
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=325.10 Aligned_cols=356 Identities=14% Similarity=0.158 Sum_probs=247.6
Q ss_pred CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccCCceeeee
Q 001318 367 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQH 445 (1101)
Q Consensus 367 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~ 445 (1101)
++.+++|++.+++... ++.+|.+.|++++|+| ++++||+|+.||.|++||+.+++.....
T Consensus 22 ~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 82 (408)
T 4a11_B 22 ESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY 82 (408)
T ss_dssp HHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE
T ss_pred cCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE
Confidence 4567777776665543 4788999999999999 9999999999999999999987654422
Q ss_pred ee----------eccccCCeeEEEEcC-CCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecC-CccEE
Q 001318 446 LE----------IDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFI 513 (1101)
Q Consensus 446 ~~----------l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l 513 (1101)
.. ..+|...|.+++|+| ++. ++++++.|+.|++||+.+++.+..+. +...+.++++.+.. ++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp EECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEE
T ss_pred eccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEE
Confidence 11 135999999999999 555 79999999999999999999988887 77888888886543 45699
Q ss_pred EEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001318 514 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 593 (1101)
Q Consensus 514 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 593 (1101)
++++.||.|++||+.+++....+..|...|.+++|+|++. ..+++++.||.|++||++++
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~ll~~~~~dg~i~i~d~~~~ 219 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--------------------YILATASADSRVKLWDVRRA 219 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT--------------------TEEEEEETTSCEEEEETTCS
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC--------------------cEEEEEcCCCcEEEEECCCC
Confidence 9999999999999999888888887777777777777664 35889999999999999877
Q ss_pred c-eeEEEcC-------------CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 594 Q-LLTSIDA-------------DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 594 ~-~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
. .+..+.. ..+...|.+++|+|++++|++++.||.|++||+.++.. ......+....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~-------- 290 (408)
T 4a11_B 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCNN-------- 290 (408)
T ss_dssp SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCCC--------
T ss_pred CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceecccccccc--------
Confidence 5 4444421 23445789999999999999999999999999987722 11111000000
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 739 (1101)
.
T Consensus 291 -----------------------------------------------------------------------------~-- 291 (408)
T 4a11_B 291 -----------------------------------------------------------------------------S-- 291 (408)
T ss_dssp -----------------------------------------------------------------------------C--
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
...............+
T Consensus 292 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 292 ----------------------------------------------------------------KKGLKFTVSCGCSSEF 307 (408)
T ss_dssp ----------------------------------------------------------------SSCCCCEECCSSSSCE
T ss_pred ----------------------------------------------------------------cccceeEEecCCCceE
Confidence 0000011111223344
Q ss_pred EEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcC
Q 001318 820 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 899 (1101)
Q Consensus 820 la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~ 899 (1101)
++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+
T Consensus 308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~ 383 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNP 383 (408)
T ss_dssp EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC---------------------
T ss_pred EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccccc
Confidence 5555589999999999999999999999999999999 8999999999999999999998877665443322 23333
Q ss_pred -CCCEEEEEeCCCceEEEeCCC
Q 001318 900 -ALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 900 -dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
+...+.+.+.|+.+++|+...
T Consensus 384 ~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 384 AFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------
T ss_pred ccceeecccCccCceeecCCcc
Confidence 334556677899999998654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=342.76 Aligned_cols=211 Identities=18% Similarity=0.295 Sum_probs=176.0
Q ss_pred cccCCCCCeEEEEEecC-CCeEEEEEcCCeEEEEEccCCcee--eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 402 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
.+.+|.+.|++++|+|+ +++|++|+.|++|++||+.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 47899999999999996 579999999999999999865321 22346889999999999999999 89999999999
Q ss_pred EEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee---cCCCCceeEEEEccCCceE
Q 001318 479 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 479 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~ 555 (1101)
+|||+.+++.+..+.+|...|.+++|+ +++.+|++++.|++|++||.......... ..|...|.+++|+|++.
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-- 530 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFS--LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL-- 530 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS--
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC--
Confidence 999999999999999999999999985 45679999999999999997643222111 23444455555554432
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
...+++++.|+.|++||+.+++....+..|.. .|.+++|+|++++|++++.||.|++||+.
T Consensus 531 -----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 531 -----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp -----------------SCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred -----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 14799999999999999999999988876644 79999999999999999999999999987
Q ss_pred Cc
Q 001318 636 DG 637 (1101)
Q Consensus 636 ~~ 637 (1101)
++
T Consensus 592 ~~ 593 (694)
T 3dm0_A 592 EG 593 (694)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=319.02 Aligned_cols=301 Identities=15% Similarity=0.199 Sum_probs=244.3
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc------eEEEecCcccCeEEEeeeec--CCc---cE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------KQYIFEGHEAPVYSVCPHHK--ENI---QF 512 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~v~~~~~--~~~---~~ 512 (1101)
....+.+|.+.|++++|+| + +|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+++ .++ .+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--C--eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 3446889999999999998 4 79999999999999999988 78889999999999999754 236 79
Q ss_pred EEEEecCCcEEEEecCCCCc-----eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEc----CCCCE-EEEEeCC
Q 001318 513 IFSTALDGKIKAWLYDNLGS-----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD----TTKNR-FLAAGDD 582 (1101)
Q Consensus 513 l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~----~~~~~-l~~~~~d 582 (1101)
|++++.||.|++||+.+... ...+..+... .....+.+++|+ |++++ |++++.|
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD----------------MKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT----------------GGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccc----------------cCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 99999999999999988765 4444444200 002345556666 66678 9999999
Q ss_pred CcEEEEECCC------CceeE-----EEcC-----CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccc
Q 001318 583 FSIKFWDMDS------VQLLT-----SIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 646 (1101)
Q Consensus 583 g~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 646 (1101)
|.|++||+.+ ++.+. .+.. ..+...+.+++|+|++ ++++++.||.|++||+.++ +.+..+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 225 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFES 225 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEEC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEec
Confidence 9999999998 66665 6643 3445579999999999 9999999999999998765 21111100
Q ss_pred ccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcc
Q 001318 647 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 726 (1101)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 726 (1101)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCC--
Q 001318 727 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-- 804 (1101)
Q Consensus 727 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~-- 804 (1101)
. .+|
T Consensus 226 ------------------------------------------------------------------------~--~~h~~ 231 (397)
T 1sq9_A 226 ------------------------------------------------------------------------Q--HSMIN 231 (397)
T ss_dssp ------------------------------------------------------------------------C--C---C
T ss_pred ------------------------------------------------------------------------c--ccccc
Confidence 0 003
Q ss_pred -CCCeeEEEEecCCCEEEEEe-C---CeEEEEECCCCceeeEecC-------------CCCCeEEEEEecCCCcEEEEEe
Q 001318 805 -EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMP-------------PPPAATFLAFHPQDNNIIAIGM 866 (1101)
Q Consensus 805 -~~~i~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~~~~~~~~-------------~~~~i~~l~~sp~d~~~lasg~ 866 (1101)
...|.+++|+|++++|++++ | +.|++||+.+++.+..+.+ |...|.+++|+| ++++|++|+
T Consensus 232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 310 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAG 310 (397)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEE
T ss_pred cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEe
Confidence 56678888888888888887 7 8899999988888888888 899999999999 899999999
Q ss_pred ccCeEEEEEeecceEeeeec------Cc---------------ccCeeEEEEcCCC----------CEEEEEeCCCceEE
Q 001318 867 DDSSIQIYNVRVDEVKSKLK------GH---------------SKRITGLAFSHAL----------NVLVSSGADSQLCV 915 (1101)
Q Consensus 867 ~dg~v~vwd~~~~~~~~~l~------~h---------------~~~V~~l~~s~dg----------~~l~s~s~D~~v~i 915 (1101)
.||.|+|||+.+++++..+. +| ...|++++|+|++ ++|++++.|+.|++
T Consensus 311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 390 (397)
T ss_dssp TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence 99999999999999999998 88 9999999999998 79999999999999
Q ss_pred EeCCCc
Q 001318 916 WSSDGW 921 (1101)
Q Consensus 916 wd~~~~ 921 (1101)
|++.++
T Consensus 391 w~~~~g 396 (397)
T 1sq9_A 391 FREAGG 396 (397)
T ss_dssp EEEEC-
T ss_pred EEcCCC
Confidence 999875
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=322.67 Aligned_cols=362 Identities=12% Similarity=0.157 Sum_probs=248.5
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 581 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
.++.+++|+++.++....+..|. ..|.+++|+| ++++|++++.||.|++|++.++ .....+......
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~--------- 88 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHG--GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVC--------- 88 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCS--SCEEEEEECTTTCCEEEEEETTSCEEEEECCCC-SSSSCEEECEEE---------
T ss_pred ccCcceeeccccCcceeeeeccC--CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCC-cccceEeccccc---------
Confidence 35567888888888888777654 4799999999 9999999999999999999877 222211100000
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 739 (1101)
... .....+|..
T Consensus 89 ---------------------------------------------------------~~~-----------~~~~~~~~~ 100 (408)
T 4a11_B 89 ---------------------------------------------------------SIG-----------RDHPDVHRY 100 (408)
T ss_dssp ---------------------------------------------------------EEC-----------TTCTTCCSS
T ss_pred ---------------------------------------------------------ccc-----------ccccccCCC
Confidence 000 000023788
Q ss_pred ceEEEEEcC-CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC--
Q 001318 740 KISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN-- 816 (1101)
Q Consensus 740 ~i~~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d-- 816 (1101)
.|.+++|+| ++..+++++.|+.|++|++.. +...... .+...+.++++++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------------------~~~~~~~----~~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNT----------------------LQTADVF----NFEETVYSHHMSPVST 154 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTT----------------------TEEEEEE----ECSSCEEEEEECSSCS
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCC----------------------Cccceec----cCCCceeeeEeecCCC
Confidence 999999999 778899999999999998743 2211111 15677889999884
Q ss_pred -CCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCc-EEEEEeccCeEEEEEeecce-Eeeee-------
Q 001318 817 -DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDE-VKSKL------- 885 (1101)
Q Consensus 817 -g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~~~-~~~~l------- 885 (1101)
+.++++++ ++.|++||+.+++.+..+.+|...|++++|+| +++ +|++|+.||.|++||+.++. .+..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence 44899988 89999999999999999999999999999999 666 69999999999999997754 33333
Q ss_pred --------cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 886 --------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 886 --------~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
.+|...|.+++|+|++++|++++.|+.|++||+.+++.............. ............+.+++++
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 311 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVP 311 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEE
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEe
Confidence 578999999999999999999999999999999987643221111111111 1122333344455666668
Q ss_pred eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccc
Q 001318 958 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1037 (1101)
Q Consensus 958 ~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1037 (1101)
.++.|++||+.+++.+..+. +|...|++++|+||+++|++++.||.|++||+.+++.+....... .
T Consensus 312 ~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-----------~- 377 (408)
T 4a11_B 312 YGSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT-----------T- 377 (408)
T ss_dssp ETTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred cCCEEEEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE-----------e-
Confidence 99999999999999998876 789999999999999999999999999999999998876544110 1
Q ss_pred eEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1038 LVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1038 ~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
...+.+.+.....+.+.|+.+++|+...
T Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 378 -KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp -----------------------------
T ss_pred -ccccccccceeecccCccCceeecCCcc
Confidence 1233333455677888899999998753
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=317.66 Aligned_cols=302 Identities=12% Similarity=0.120 Sum_probs=235.9
Q ss_pred cccCCCCCeEEEEEecCC-CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCeEEEEEecCCCcEE
Q 001318 402 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~ 479 (1101)
.+.+|...|++++|+|++ ++||+|+.||.|+|||+.+++.... ..+.+|...|.+++|+| ++. +|++++.|+.|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~--~l~s~~~d~~i~ 144 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTN--QLFVSSIRGATT 144 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEE--EEEEEETTTEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCC--EEEEEeCCCEEE
Confidence 378999999999999999 9999999999999999998875542 23457999999999999 556 799999999999
Q ss_pred EEeCCCCceEEEecC---cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEE
Q 001318 480 VWDATNGAKQYIFEG---HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 480 iwd~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
+||+.+ ..+..+.. |...|.+++|+ +++.+|++++.|+.|++||++ .+....+..|...|.+++|+|++.
T Consensus 145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~--- 217 (383)
T 3ei3_B 145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVS--VSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD--- 217 (383)
T ss_dssp EEETTS-CEEEEEECCCCSSCCEEEEEEE--TTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT---
T ss_pred EEECCC-CceEEEeccCCCCCCeEEEEEC--CCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC---
Confidence 999985 55566644 44889999985 456899999999999999994 556666666666666666555553
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEE
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 631 (1101)
.++++++.|+.|++||+.+ +..+..+. + ...|.+++|+| ++++|++++.|+.|++
T Consensus 218 -----------------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~--~~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 218 -----------------WLMATSSVDATVKLWDLRNIKDKNSYIAEMP-H--EKPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp -----------------TEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-C--SSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred -----------------CEEEEEeCCCEEEEEeCCCCCcccceEEEec-C--CCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 2799999999999999988 66666663 3 34799999999 9999999999999999
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 711 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 711 (1101)
||+.++ .....+.+|.....
T Consensus 278 wd~~~~-~~~~~~~~~~~~~~----------------------------------------------------------- 297 (383)
T 3ei3_B 278 YSSYDW-SKPDQIIIHPHRQF----------------------------------------------------------- 297 (383)
T ss_dssp EETTBT-TSCSEEEECCBCCC-----------------------------------------------------------
T ss_pred EECCCC-cccccccccccccc-----------------------------------------------------------
Confidence 999887 33333332221100
Q ss_pred cceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCC
Q 001318 712 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 791 (1101)
Q Consensus 712 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~ 791 (1101)
.+...+. +.|+|++
T Consensus 298 ------------------------~~~~~~~-~~~~p~~----------------------------------------- 311 (383)
T 3ei3_B 298 ------------------------QHLTPIK-ATWHPMY----------------------------------------- 311 (383)
T ss_dssp ------------------------TTSCCCC-CEECSSS-----------------------------------------
T ss_pred ------------------------ccccceE-EeccCCC-----------------------------------------
Confidence 0112222 2344333
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC--CCCCeEEEEEecCCCcEEEEEecc
Q 001318 792 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDD 868 (1101)
Q Consensus 792 g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~d 868 (1101)
.+..++++|++++ +++ |+.|++||+.+++.+..+.+ |...+.+++|+| ++++|++|+ |
T Consensus 312 ---------------~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d 372 (383)
T 3ei3_B 312 ---------------DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-G 372 (383)
T ss_dssp ---------------SEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-T
T ss_pred ---------------CceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-C
Confidence 3455778888888 555 89999999999999999987 456788889999 999999997 9
Q ss_pred CeEEEEEeec
Q 001318 869 SSIQIYNVRV 878 (1101)
Q Consensus 869 g~v~vwd~~~ 878 (1101)
|.|+|||+.+
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999864
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=329.20 Aligned_cols=311 Identities=13% Similarity=0.125 Sum_probs=227.7
Q ss_pred ccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCeEEEEEecCCCcEEE
Q 001318 403 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 403 ~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~i 480 (1101)
..+|...|+||+|+| ++++||+|+.||+|+|||+.+++... ...+.+|.+.|++|+|+| ++. +|++|+.|++|++
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-~~~~~gH~~~V~~l~f~p~~~~--~l~s~s~D~~v~i 191 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-FIKGIGAGGSITGLKFNPLNTN--QFYASSMEGTTRL 191 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-EECCCSSSCCCCEEEECSSCTT--EEEEECSSSCEEE
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-EEEccCCCCCEEEEEEeCCCCC--EEEEEeCCCEEEE
Confidence 456888999999999 67899999999999999998876432 335678999999999998 566 7999999999999
Q ss_pred EeCCCCceEEEecCc--ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec
Q 001318 481 WDATNGAKQYIFEGH--EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 481 wd~~~~~~~~~~~~h--~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
||++++........| ...+.+++| ++++.+|++|+.||.|++||++. +....+..|...|.+++|+|++.
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~----- 263 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDV--SASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD----- 263 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEE--ETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS-----
T ss_pred eeccCCceeEEeccCCCCccEEEEEE--CCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc-----
Confidence 999876554444333 334566666 56678999999999999999875 45566777777788777777765
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.++++++.|+.|++||+++.+....+. ...+...|.+++|+|+|++|++++.||.|++||+.++
T Consensus 264 ---------------~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 264 ---------------WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp ---------------SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred ---------------eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 468899999999999998876544332 2234557999999999999999999999999999887
Q ss_pred cccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeee
Q 001318 638 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 717 (1101)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 717 (1101)
.....+..|.....
T Consensus 329 -~~~~~~~~~~~~~~----------------------------------------------------------------- 342 (435)
T 4e54_B 329 -DCPLGLIPHPHRHF----------------------------------------------------------------- 342 (435)
T ss_dssp -SSEEEECCCCCCCC-----------------------------------------------------------------
T ss_pred -ccceEEeccccccc-----------------------------------------------------------------
Confidence 33333322211100
Q ss_pred ccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc
Q 001318 718 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 797 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 797 (1101)
....+....|++++..++++
T Consensus 343 -------------------~~~~~~~~~~~~~~~~~~~~----------------------------------------- 362 (435)
T 4e54_B 343 -------------------QHLTPIKAAWHPRYNLIVVG----------------------------------------- 362 (435)
T ss_dssp -------------------SSSCCCBCEECSSSSCEEEE-----------------------------------------
T ss_pred -------------------ccceeEEEEEcCCCCEEEEE-----------------------------------------
Confidence 00111223455555444433
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEec-CCCCCeEEE-EEecCCCcEEEEEeccCeEEE
Q 001318 798 DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFL-AFHPQDNNIIAIGMDDSSIQI 873 (1101)
Q Consensus 798 ~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~-~~~~~i~~l-~~sp~d~~~lasg~~dg~v~v 873 (1101)
+++++..++++. ++.|++||..+++.+..+. +|...|.++ +|+| ++++||+|+ |+.|+|
T Consensus 363 ---------------~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~i 425 (435)
T 4e54_B 363 ---------------RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILI 425 (435)
T ss_dssp ---------------CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEE
T ss_pred ---------------EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEE
Confidence 233333333333 4679999999999988864 677788887 6999 899999876 889999
Q ss_pred EEeecceEe
Q 001318 874 YNVRVDEVK 882 (1101)
Q Consensus 874 wd~~~~~~~ 882 (1101)
||+++++..
T Consensus 426 W~~~~gk~r 434 (435)
T 4e54_B 426 WSQQEARTR 434 (435)
T ss_dssp CCCC-----
T ss_pred EECCcCeee
Confidence 999987643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=307.56 Aligned_cols=306 Identities=11% Similarity=0.115 Sum_probs=242.0
Q ss_pred cceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEE
Q 001318 336 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 336 ~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 415 (1101)
.+...+.+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.+. .+.+|...|.+++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~ 82 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDV 82 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEE
Confidence 445556779999999999999995 9999999999999999988776 37789999999999
Q ss_pred ecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC-----CcEEEEeCCCCc---
Q 001318 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-----KTIKVWDATNGA--- 487 (1101)
Q Consensus 416 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~--- 487 (1101)
+|++++|++++.|+.|++||+.+++.+.. +. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 83 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 83 DCFTKYCVTGSADYSIKLWDVSNGQCVAT---WK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEE---EE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEE---ee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccce
Confidence 99999999999999999999999887663 33 888999999999999 78888888 999999998764
Q ss_pred --------eEEEecCccc--CeEEEeeeecCCccEEEEEecCCcEEEEecCC-CCceeeecCCCCceeEEEEccCCceEE
Q 001318 488 --------KQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 488 --------~~~~~~~h~~--~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+.+ ......+..+...+.+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~------- 227 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS------- 227 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC-------
T ss_pred eecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC-------
Confidence 3445556666 899999854 557999999999999999988 45555556565555555554
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
|++++|++++.|+.|++||+.+++.+..+... ..+.+++|+|+++++++++.++...+|....
T Consensus 228 --------------~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 228 --------------PDLTYFITSSRDTNSFLVDVSTLQVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp --------------TTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECCC---------
T ss_pred --------------CCCCEEEEecCCceEEEEECCCCceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 45568999999999999999999999888733 3589999999999999999998666654322
Q ss_pred ccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee
Q 001318 637 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 716 (1101)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 716 (1101)
.. ....+++|
T Consensus 291 ~~----------------------------------------------------------------------~~~~i~~~ 300 (369)
T 3zwl_B 291 NE----------------------------------------------------------------------GKFEARFY 300 (369)
T ss_dssp --------------------------------------------------------------------------CEEEEE
T ss_pred CC----------------------------------------------------------------------CcceeEEE
Confidence 20 01245666
Q ss_pred eccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeecccc
Q 001318 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 770 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 770 (1101)
++......... .+|...|.+++|+|++++|++++.||.|++|++...
T Consensus 301 d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 301 HKIFEEEIGRV-------QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ETTTCCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ecCCCcchhhe-------ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 65543221111 237889999999999999999999999999998654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=316.58 Aligned_cols=308 Identities=12% Similarity=0.170 Sum_probs=240.7
Q ss_pred EEECCCCceeEEEcCCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCccccc
Q 001318 587 FWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 665 (1101)
Q Consensus 587 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1101)
+|++...+....+..|. ..|.+++|+|++ ++|++|+.||.|++||+.++ .....+.
T Consensus 57 ~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~-------------------- 113 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD--RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQ-------------------- 113 (383)
T ss_dssp HHHHTTCEEEEEECCCS--SCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCEEEEC--------------------
T ss_pred cccccccceEEeccCCC--CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccceeee--------------------
Confidence 34445566666776554 479999999999 99999999999999998766 2111110
Q ss_pred chhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEE
Q 001318 666 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 745 (1101)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 745 (1101)
. .+|...|.+++
T Consensus 114 ----------------------------------------------------~----------------~~h~~~v~~~~ 125 (383)
T 3ei3_B 114 ----------------------------------------------------G----------------MGPGDAITGMK 125 (383)
T ss_dssp ----------------------------------------------------C----------------CSTTCBEEEEE
T ss_pred ----------------------------------------------------c----------------CCcCCceeEEE
Confidence 0 12778999999
Q ss_pred EcC-CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001318 746 FTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 824 (1101)
Q Consensus 746 ~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s 824 (1101)
|+| ++..+++++.|+.|++||+... ..........+...|.+++|+|++++|++++
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSGS-----------------------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTSC-----------------------EEEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCCC-----------------------ceEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 999 7899999999999999997421 1111111122568899999999999999999
Q ss_pred -CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCc-EEEEEeccCeEEEEEeec----ceEeeeecCcccCeeEEEEc
Q 001318 825 -GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 825 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~----~~~~~~l~~h~~~V~~l~~s 898 (1101)
|+.|++||+ +++.+..+.+|...|.+++|+| +++ +|++|+.||.|++||+.+ +.++..+ +|...|++++|+
T Consensus 183 ~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 183 STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp TTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence 899999999 5788899999999999999999 777 999999999999999998 6666666 699999999999
Q ss_pred C-CCCEEEEEeCCCceEEEeCCCcccccceeeecC--CCCCC-------CCCCCeEEEEcCCCcEEEEEeCCeEEEEEcC
Q 001318 899 H-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--TGRTP-------TAQSDTRVQFHQDQIHFLVVHETQLAIFETT 968 (1101)
Q Consensus 899 ~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--~~~~~-------~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~ 968 (1101)
| ++++|++++.|+.|++||+.+++.......... ..+.. ....+..++|+|+|++ ..+.|+.|++||+.
T Consensus 260 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN 338 (383)
T ss_dssp TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence 9 999999999999999999998765332211110 01110 0123344566666666 22579999999999
Q ss_pred CceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 969 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 969 ~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
+++.+..+....|...+.+++|+||+++|++|+ |+.|+|||+++
T Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999887656778889999999999999997 99999999875
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-33 Score=301.33 Aligned_cols=255 Identities=16% Similarity=0.200 Sum_probs=207.4
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCc--ceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 417 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 417 (1101)
..+|.+.|++++|+|+|++ ||+|+.|++|+|||+.++ +.+. .+.+|.+.|++++|+|
T Consensus 5 ~~~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~ 64 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 64 (297)
T ss_dssp CCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCG
T ss_pred ccCCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCC
Confidence 4469999999999999995 999999999999999754 2222 4789999999999986
Q ss_pred -CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCeEEEEEecCCCcEEEEeCCCCc--eEEEe
Q 001318 418 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF 492 (1101)
Q Consensus 418 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~ 492 (1101)
+|++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||++++. ....+
T Consensus 65 ~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~ 141 (297)
T 2pm7_B 65 KFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIII 141 (297)
T ss_dssp GGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred CcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeee
Confidence 4899999999999999999987422 22357789999999999998 67 79999999999999998764 24677
Q ss_pred cCcccCeEEEeeeecC-----------CccEEEEEecCCcEEEEecCCCC----ceeeecCCCCceeEEEEccCCceEEe
Q 001318 493 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~-----------~~~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
.+|...|.+++|++.. ++.+|++|+.|++|++||+++.. ....+..|...|.+++|+|++.
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~---- 217 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 217 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC----
Confidence 8999999999997652 35799999999999999998765 3345667777777777776641
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
.+.+|++++.|++|++||+++.. ....+....+...|.+++|+|++++|++++.||.|++|+.
T Consensus 218 --------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 218 --------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred --------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 02579999999999999998753 1223322344557899999999999999999999999997
Q ss_pred cC
Q 001318 635 SD 636 (1101)
Q Consensus 635 ~~ 636 (1101)
..
T Consensus 284 ~~ 285 (297)
T 2pm7_B 284 NL 285 (297)
T ss_dssp CT
T ss_pred CC
Confidence 63
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=310.50 Aligned_cols=299 Identities=11% Similarity=0.166 Sum_probs=236.6
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecC---CCcEEEEeCCCCceEEEe-cCcccCeEEEeeeecC-CccEEEEEecCCc
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE-NIQFIFSTALDGK 521 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~-~~~~l~s~~~dg~ 521 (1101)
.+.+|...|.+++|+|++.. ++++|+. |+.|++||+.+++..... .+|...|.+++|+++. ++.+|++++.||.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~-l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEECSSCEEEEEECTTSSE-EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hccCCCCceEEEEEcCCCce-EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 45689999999999999975 5667776 999999999998876543 3699999999996542 2589999999999
Q ss_pred EEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEE
Q 001318 522 IKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSI 599 (1101)
Q Consensus 522 i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 599 (1101)
|++||+.+.+ ....+..|...|.++.|.+. ++|+|++++|++++.||.|++||+.+++ .+..+
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGG---------------LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESG---------------GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccc---------------cccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence 9999999887 77778888888888765432 1356677899999999999999999887 67777
Q ss_pred cCCCC--CCCcCeEE----EccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhh
Q 001318 600 DADGG--LPASPRIR----FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA 673 (1101)
Q Consensus 600 ~~~~~--~~~v~~~~----~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1101)
..+.. ...+.+++ |+|+++++++++.||.|++||+.++. ....
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~------------------------------ 205 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-LRWE------------------------------ 205 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-EEEE------------------------------
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-eeee------------------------------
Confidence 65433 33677787 67899999999999999999986651 1000
Q ss_pred cccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceE
Q 001318 674 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 753 (1101)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 753 (1101)
..
T Consensus 206 -------------------------------------------------------------~~----------------- 207 (357)
T 3i2n_A 206 -------------------------------------------------------------TN----------------- 207 (357)
T ss_dssp -------------------------------------------------------------EE-----------------
T ss_pred -------------------------------------------------------------cC-----------------
Confidence 00
Q ss_pred EeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec---CCCEEEEEe-CCeEE
Q 001318 754 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKIS 829 (1101)
Q Consensus 754 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~---dg~~la~~s-dg~i~ 829 (1101)
|...|.+++|+| ++.++++++ ||.|+
T Consensus 208 --------------------------------------------------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 208 --------------------------------------------------IKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp --------------------------------------------------CSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred --------------------------------------------------CCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 344566666666 666777766 67777
Q ss_pred EEECCCCceeeEec-----CCCCCeEEEEEecCCCc-EEEEEeccCeEEEEEeecc-------------------eEeee
Q 001318 830 LFNMMTFKTMATFM-----PPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD-------------------EVKSK 884 (1101)
Q Consensus 830 vwd~~~~~~~~~~~-----~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~~-------------------~~~~~ 884 (1101)
+||+.+++....+. +|...|.+++|+| +++ +|++|+.||.|++||+.++ +.+..
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN 316 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence 77777665555444 8999999999999 777 8999999999999999853 46778
Q ss_pred ecCcccCeeEEEEcCCCCEEE-EEeCCCceEEEeCCCc
Q 001318 885 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGW 921 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~-s~s~D~~v~iwd~~~~ 921 (1101)
+.+|...|++++|+|++++|+ +++.|+.|++||+.+.
T Consensus 317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 899999999999999999998 8999999999999874
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=308.27 Aligned_cols=322 Identities=14% Similarity=0.198 Sum_probs=238.0
Q ss_pred cccCCCCCeEEEEEecCCCeEE-EEEc---CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC---CCeEEEEEecC
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFG-VAYS---RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGD 474 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d---~~~~~l~s~~~ 474 (1101)
++.+|...|.+++|+|++..++ +|+. |+.|+|||+.+++..... ..+|...|.+++|+|+ +. +|++|+.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR--EIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE--EEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee--eecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 5678999999999999997655 5555 999999999998754322 3379999999999999 56 7999999
Q ss_pred CCcEEEEeCCCCc-eEEEecCcccCeEEEeeee----cCCccEEEEEecCCcEEEEecCCCC-ceeeecCCCC----cee
Q 001318 475 DKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGR----WCT 544 (1101)
Q Consensus 475 d~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~----~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~----~v~ 544 (1101)
|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+.+.. ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999998 8899999999999997643 5677899999999999999999876 4555544332 333
Q ss_pred EEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc---CCCEEE
Q 001318 545 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK---DGCLLA 621 (1101)
Q Consensus 545 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~ 621 (1101)
+++|. .+|+|+++++++++.||.|++||+++++....... ...|.+++|+| ++.+|+
T Consensus 169 ~~~~~-----------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 169 TVAFG-----------------NAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI---KNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp EEEEE-----------------CCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEESCSSSSCCEEE
T ss_pred EEEEE-----------------eccCCCCCEEEEEccCCeEEEEECccCceeeecCC---CCceEEEEcCCCCCCCCEEE
Confidence 33321 12567778999999999999999999987665442 33699999999 999999
Q ss_pred EEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCc
Q 001318 622 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV 701 (1101)
Q Consensus 622 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1101)
+++.||.|++||+.++ .....+..
T Consensus 229 ~~~~dg~i~i~d~~~~-~~~~~~~~------------------------------------------------------- 252 (357)
T 3i2n_A 229 ATSLEGKFHVFDMRTQ-HPTKGFAS------------------------------------------------------- 252 (357)
T ss_dssp EEESTTEEEEEEEEEE-ETTTEEEE-------------------------------------------------------
T ss_pred EECCCCeEEEEeCcCC-Ccccceee-------------------------------------------------------
Confidence 9999999999998766 22211100
Q ss_pred cceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCc-eEEeeecCceEEeeeccccccCCCCceee
Q 001318 702 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATA 780 (1101)
Q Consensus 702 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 780 (1101)
... .+|...|.+++|+|++. ++++++.||.|++|++...
T Consensus 253 --------------~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------- 292 (357)
T 3i2n_A 253 --------------VSE----------------KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP---------- 292 (357)
T ss_dssp --------------EEE----------------ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC----------
T ss_pred --------------ecc----------------CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC----------
Confidence 000 12667788888888887 6888888888888886321
Q ss_pred eecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCc
Q 001318 781 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 860 (1101)
Q Consensus 781 ~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 860 (1101)
.... .+.+++..... .+ +.+.+..+.+|...|++++|+| +++
T Consensus 293 ------------~~~~---------------~~~~~g~~~~~--~~--------~~~~~~~~~~~~~~v~~~~~s~-~~~ 334 (357)
T 3i2n_A 293 ------------IQRS---------------KKDSEGIEMGV--AG--------SVSLLQNVTLSTQPISSLDWSP-DKR 334 (357)
T ss_dssp ------------SCC-----------------CCTTSCCCCC--CC--------EEEEEEEEECCSSCEEEEEECS-SST
T ss_pred ------------cccc---------------cccCCCCcccc--cc--------ccceeeccccCCCCeeEEEEcC-CCC
Confidence 0000 01111111100 01 2245667888999999999999 888
Q ss_pred EEE-EEeccCeEEEEEeecceE
Q 001318 861 IIA-IGMDDSSIQIYNVRVDEV 881 (1101)
Q Consensus 861 ~la-sg~~dg~v~vwd~~~~~~ 881 (1101)
+|+ +|+.||.|+|||+.+.+.
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp TEEEEEETTSEEEEEEECC---
T ss_pred eEEEEecCCCcEEEEECCCccc
Confidence 887 899999999999987653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=310.60 Aligned_cols=264 Identities=17% Similarity=0.265 Sum_probs=209.9
Q ss_pred cCCCCcEEEEEecC---CCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC-
Q 001318 343 NQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 418 (1101)
Q Consensus 343 ~h~~~v~~~~~spd---g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 418 (1101)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|++++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEeccCC
Confidence 69999999999995 55557777777899999999887764311 1112347889999999999
Q ss_pred ---CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCeEEEEEecCCCcEEEEeCCCCceEEEe--
Q 001318 419 ---GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 492 (1101)
Q Consensus 419 ---g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 492 (1101)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.|+.|++||+.+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999987665 5778999999999999 777 8999999999999999999999988
Q ss_pred -cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCc-------------eEEec
Q 001318 493 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------RTYQG 558 (1101)
Q Consensus 493 -~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~~~~~ 558 (1101)
.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+.. .+.+++++. .....
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCcccccc
Confidence 78999999999854 568999999999999999987654432221 001111111 00111
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--------------eEEEcCCCCCCCcCeEEEccC--CCEEEE
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--------------LTSIDADGGLPASPRIRFNKD--GCLLAV 622 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~~ 622 (1101)
.....+.+++|+ ++++++++.|+.|++||+.++.. +..+..+. ..|.+++|+|+ +++|++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEE
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEE
Confidence 133467777777 67899999999999999988754 66666554 46899999999 999999
Q ss_pred EeCCCcEEEEEecCc
Q 001318 623 STNDNGIKILATSDG 637 (1101)
Q Consensus 623 ~~~dg~i~iw~~~~~ 637 (1101)
++.||.|++||+.++
T Consensus 305 ~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 305 GNQVGKLYVWDLEVE 319 (366)
T ss_dssp ECTTSCEEEEECCSS
T ss_pred EecCCcEEEEECCCC
Confidence 999999999999876
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=320.76 Aligned_cols=294 Identities=15% Similarity=0.185 Sum_probs=221.3
Q ss_pred ceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCcccc
Q 001318 563 SLGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 563 ~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
.+++++|+| ++++|++|+.||.|+|||+.+++....+...+|...|++++|+| ++++|++++.||+|++||+.++ ..
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-~~ 199 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-IL 199 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-EE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-ce
Confidence 344555555 33679999999999999999887776666666677899999998 7899999999999999997543 10
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
..+.
T Consensus 200 -~~~~--------------------------------------------------------------------------- 203 (435)
T 4e54_B 200 -RVFA--------------------------------------------------------------------------- 203 (435)
T ss_dssp -EEEE---------------------------------------------------------------------------
T ss_pred -eEEe---------------------------------------------------------------------------
Confidence 0000
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
..
T Consensus 204 -----------------------------------~~------------------------------------------- 205 (435)
T 4e54_B 204 -----------------------------------SS------------------------------------------- 205 (435)
T ss_dssp -----------------------------------CC-------------------------------------------
T ss_pred -----------------------------------cc-------------------------------------------
Confidence 00
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
..+...+.+++|+|++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..+|++|+.||.|+|||+.+.
T Consensus 206 -~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~ 283 (435)
T 4e54_B 206 -DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283 (435)
T ss_dssp -SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred -CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccc
Confidence 00334467788999999999998 8999999986 46677889999999999999955568999999999999999886
Q ss_pred eEeee---ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 880 EVKSK---LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 880 ~~~~~---l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
+.... ..+|...|++++|+|||++|++++.|++|+|||+.+++........... ......+....|+|++.++++
T Consensus 284 ~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR--HFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp CSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC--CCSSSCCCBCEECSSSSCEEE
T ss_pred cccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc--ccccceeEEEEEcCCCCEEEE
Confidence 64443 3679999999999999999999999999999999987643322111100 000112334566666666555
Q ss_pred E-------------eCCeEEEEEcCCceeeeeccCCCCCCCeeEE-EEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 001318 957 V-------------HETQLAIFETTKLECVKQWVPRESSAPITHA-TFSCDSQLVYACFLDATVCVFSAANLKLR 1017 (1101)
Q Consensus 957 ~-------------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l-~~spdg~~l~s~s~dg~v~vwd~~~~~~~ 1017 (1101)
+ .++.|++||..+++.+..+. .+|...|.++ +|+|||++|++|+ |++|+|||+.+++..
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 3 23579999999999988765 3678889887 6999999999876 889999999988754
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=320.46 Aligned_cols=326 Identities=11% Similarity=0.110 Sum_probs=243.1
Q ss_pred cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC
Q 001318 450 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 529 (1101)
Q Consensus 450 ~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~ 529 (1101)
.-...|.+++|+|||+ +++|++.|++|+ |...++.+ .+|...|.+++|+|+ | .++.+.+|+.+
T Consensus 13 ~~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPd--g-------~~~~~~~~~~~- 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPL--E-------FENKLDFELAQ- 75 (588)
T ss_dssp CCSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECC--C-------CCCTTTTSCCC-
T ss_pred HhhccEEEEEECCCCC--EEEEEcCCceee--ccccccee---cCCCccEEEEEECCC--C-------CcceEEEEeCC-
Confidence 3457899999999999 899999999999 76666544 799999999999654 3 45555555433
Q ss_pred CCceeeec-CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC---C
Q 001318 530 LGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG---L 605 (1101)
Q Consensus 530 ~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~ 605 (1101)
....+. .+...|.+++| +|+|.+|++++.||.|++||... ++..+. +.. .
T Consensus 76 --~~~~~~~~~~~~V~~vaw---------------------SPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 76 --QNGLLNSQPVCYPRVCKP---------------------SPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp --SSCSSTTSCSCCEEEEEE---------------------CSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred --CceEeecCCCCcEEEEEE---------------------CCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 222222 22444555555 55556899999999999999644 555555 332 2
Q ss_pred CCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccc
Q 001318 606 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 685 (1101)
Q Consensus 606 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1101)
..+.+++|||||++|++|+.||+|++||+.++ ..... .|
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~-~l~~~-----------------~~----------------------- 168 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKN-SENTP-----------------EF----------------------- 168 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCC-TTTCC-----------------CC-----------------------
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC-ccccc-----------------cc-----------------------
Confidence 25899999999999999999999999998765 11000 00
Q ss_pred cccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEee
Q 001318 686 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 765 (1101)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw 765 (1101)
+.+ ..+
T Consensus 169 ---------------------------i~l-----------------------------------------------~ti 174 (588)
T 2j04_A 169 ---------------------------YFE-----------------------------------------------SSI 174 (588)
T ss_dssp ---------------------------EEE-----------------------------------------------EEE
T ss_pred ---------------------------eee-----------------------------------------------eee
Confidence 000 000
Q ss_pred eccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce---eeE
Q 001318 766 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT---MAT 841 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~---~~~ 841 (1101)
. ....+|...|.+++|+||| +++++ |++|++||+.++.. .++
T Consensus 175 ~--------------------------------~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 175 R--------------------------------LSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp E--------------------------------CSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred e--------------------------------cccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceee
Confidence 0 0001277889999999999 45554 99999999988774 356
Q ss_pred e-cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEE--cCCCCEEEEEeCCCceEEEeC
Q 001318 842 F-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF--SHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 842 ~-~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~--s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+ .+|...|.+++|+ +++||+++ +++|++||+.+++......+|.+.|.+++| +||+..|++++.||+ ++|..
T Consensus 221 L~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 221 IQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred ecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 6 4788899999999 37899887 699999999988874444489999999999 999999999999999 99987
Q ss_pred CCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEE
Q 001318 919 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY 998 (1101)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~ 998 (1101)
+. ++|+||+..++.. |+++++|+...+. ...+ .+...|++++|||||+.+|
T Consensus 296 d~------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~---~~~~~I~~va~SPdG~~lA 346 (588)
T 2j04_A 296 DE------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNY---ETTLVIHGISLSPDGYSIA 346 (588)
T ss_dssp SS------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSS---CCEEEEEEEEECTTSSEEE
T ss_pred cc------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeee---ccceEEEEEEECCCCCEEE
Confidence 62 4589999887775 9999999986554 3332 2367799999999999999
Q ss_pred EEE
Q 001318 999 ACF 1001 (1101)
Q Consensus 999 s~s 1001 (1101)
+++
T Consensus 347 ~~~ 349 (588)
T 2j04_A 347 IVY 349 (588)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=309.06 Aligned_cols=244 Identities=12% Similarity=0.089 Sum_probs=205.7
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcc--eeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
|.+.|++++|+|+|++ |++|+.|+.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 8899999999999995 9999999999999999886 333 36789999999999999999
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce---E-EEecCccc
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---Q-YIFEGHEA 497 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~-~~~~~h~~ 497 (1101)
|++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++ +|++++.|+.|++||+..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999999886433 234578999999999999999 799999999999999998873 2 33467899
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCC------------------CCceeeecCCCCceeEEEEccCCceEEecc
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN------------------LGSRVDYEAPGRWCTTMAYSADGTRTYQGF 559 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 559 (1101)
.|.+++|++ ++.+|++++.||.|++||+.. ......+..+..
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 203 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG------------------ 203 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS------------------
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC------------------
Confidence 999999854 568999999999999999753 222233333333
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
.+..++|+|++++|++++.|+.|++||+.+++.+..+..+.. .+.+++|+|++++++++ .|+.|++|++.+
T Consensus 204 ---~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 204 ---WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ---CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ---eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 556666666777899999999999999999999999986643 69999999999988888 899999999987
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=310.21 Aligned_cols=323 Identities=13% Similarity=0.162 Sum_probs=240.5
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
+..|.+.|++++|+|||++|++++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 45689999999999999999999999999999999876 223336789999999999999999 799999999999999
Q ss_pred CCCCceEEE--ecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCcee---e-ecCCCCceeEEEEccCCceEE
Q 001318 483 ATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---D-YEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 483 ~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~---~-~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
+.+++.... +..|...|.+++|+ +++.+|++++.||.|++||++...... . ...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~--------------- 143 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWA--PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS--------------- 143 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEEC--TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS---------------
T ss_pred CCCCeeeeeEEeecCCCceeEEEEC--CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC---------------
Confidence 999876544 46799999999985 456899999999999999998765321 1 122333
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC------------------CCCceeEEEcCCCCCCCcCeEEEccCCC
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM------------------DSVQLLTSIDADGGLPASPRIRFNKDGC 618 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 618 (1101)
.+.+++|+|+++++++++.||.|++||+ ..++.+..+..+ ...+.+++|+|+++
T Consensus 144 ------~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 144 ------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGS 215 (372)
T ss_dssp ------CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSS
T ss_pred ------CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCC
Confidence 4555666666678999999999999995 467777777654 34799999999999
Q ss_pred EEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccc
Q 001318 619 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 698 (1101)
Q Consensus 619 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1101)
+|++++.||.|++||+.++ +.+..+.
T Consensus 216 ~l~~~~~d~~i~i~d~~~~-~~~~~~~----------------------------------------------------- 241 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKK-MAVATLA----------------------------------------------------- 241 (372)
T ss_dssp EEEEEETTTEEEEEEGGGT-TEEEEEE-----------------------------------------------------
T ss_pred EEEEEeCCCEEEEEECCCC-ceeEEEc-----------------------------------------------------
Confidence 9999999999999999876 3222221
Q ss_pred cCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCce
Q 001318 699 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA 778 (1101)
Q Consensus 699 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 778 (1101)
.|...|.+++|+|++.+++++ .|+.+++|++..
T Consensus 242 -------------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~--------- 274 (372)
T 1k8k_C 242 -------------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS--------- 274 (372)
T ss_dssp -------------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET---------
T ss_pred -------------------------------------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC---------
Confidence 155678999999999866666 899999998732
Q ss_pred eeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEE---ECCCCcee------eEe-cCCCCC
Q 001318 779 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF---NMMTFKTM------ATF-MPPPPA 848 (1101)
Q Consensus 779 ~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vw---d~~~~~~~------~~~-~~~~~~ 848 (1101)
..+..... +..... ..-..+....+++| +... ... ..+ .+|...
T Consensus 275 -----------~~~~~~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 275 -----------AAGKLSFG------GRLDVP--------KQSSQRGLTARERFQNLDKKA-SSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp -----------TTTEEEEC------CCCCCC----------------CHHHHHHHCCCCC----------CCCSSSSSSC
T ss_pred -----------cCceEEEe------eccCcc--------ccchhhhcchhhhhhhccccc-ccccCccccccccccccCC
Confidence 00210000 000000 00011113445666 4332 222 333 489999
Q ss_pred eEEEEEecCCC---cEEEEEeccCeEEEEEeecce
Q 001318 849 ATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 849 i~~l~~sp~d~---~~lasg~~dg~v~vwd~~~~~ 880 (1101)
|++++|++.++ ++|++|+.||.|++||+.+++
T Consensus 329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 99999776477 999999999999999998754
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=311.56 Aligned_cols=294 Identities=12% Similarity=0.162 Sum_probs=218.3
Q ss_pred cCCeeEEEEcCCCCeEEEEEecCCC-------cEEEEeCCCCce----------EEEecCcccCeEEEeeeecCCccEEE
Q 001318 452 VGGVNDIAFSHPNKQLCVITCGDDK-------TIKVWDATNGAK----------QYIFEGHEAPVYSVCPHHKENIQFIF 514 (1101)
Q Consensus 452 ~~~V~~~~~s~d~~~~~l~s~~~d~-------~i~iwd~~~~~~----------~~~~~~h~~~v~~v~~~~~~~~~~l~ 514 (1101)
.-||++++|+||++ +|++|+.|. .|++|++..+.. ...+.+|...|.++++ +. ..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~--~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SK--GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ET--TEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CC--CEEE
Confidence 35899999999998 789987543 599999876532 1246678888887765 33 4677
Q ss_pred EEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001318 515 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 594 (1101)
Q Consensus 515 s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 594 (1101)
+|+.++..++| +++.|+.+++|++....
T Consensus 88 ~g~~~~~~~l~----------------------------------------------------s~~~d~~~r~~~~~~~~ 115 (365)
T 4h5i_A 88 VGCNENSTKIT----------------------------------------------------QGKGNKHLRKFKYDKVN 115 (365)
T ss_dssp EECCCCHHHHH----------------------------------------------------HTSCCCCEEEEEEETTT
T ss_pred EEECCCccEEE----------------------------------------------------EecCCCcEEEEEecCCC
Confidence 77666554443 23445566666655432
Q ss_pred ee----EEEc---CCCCCCCcCeEEEccCCCEEEEEe--CCCcEEEEEecCccccccccccccccccccCCCCCCccccc
Q 001318 595 LL----TSID---ADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 665 (1101)
Q Consensus 595 ~~----~~~~---~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1101)
.. .... .......+.+++|+|||+++++++ .|++|++||+.++ +....+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~-~~~~~~~-------------------- 174 (365)
T 4h5i_A 116 DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL-TEKFEIE-------------------- 174 (365)
T ss_dssp TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT-EEEEEEE--------------------
T ss_pred ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC-cEEEEeC--------------------
Confidence 21 1111 112223477899999999987654 6899999998876 2222111
Q ss_pred chhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEE
Q 001318 666 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 745 (1101)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 745 (1101)
|...|.+++
T Consensus 175 -----------------------------------------------------------------------~~~~V~~v~ 183 (365)
T 4h5i_A 175 -----------------------------------------------------------------------TRGEVKDLH 183 (365)
T ss_dssp -----------------------------------------------------------------------CSSCCCEEE
T ss_pred -----------------------------------------------------------------------CCCceEEEE
Confidence 456789999
Q ss_pred EcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccc-ccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001318 746 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS 824 (1101)
Q Consensus 746 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~-~~~~~~~~~~~~i~~~~~s~dg~~la~~s 824 (1101)
|+|||+++++++.++.+.+|.. ++... .... ..|...|.+++|+|+++++++++
T Consensus 184 fspdg~~l~s~s~~~~~~~~~~-----------------------~~~~~~~~~~--~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 184 FSTDGKVVAYITGSSLEVISTV-----------------------TGSCIARKTD--FDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp ECTTSSEEEEECSSCEEEEETT-----------------------TCCEEEEECC--CCTTEEEEEEEEEETTEEEEEEE
T ss_pred EccCCceEEeccceeEEEEEec-----------------------cCcceeeeec--CCCCCCEEEEEEcCCCCEEEEEe
Confidence 9999999988886655444432 22211 1111 23788899999999999999998
Q ss_pred -CC----eEEEEECCCCce----eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-cCcccCeeE
Q 001318 825 -GG----KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITG 894 (1101)
Q Consensus 825 -dg----~i~vwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~ 894 (1101)
++ .+++|++..... ...+.+|...|++++|+| ++++||+|+.|++|+|||+.+++++..+ .+|...|++
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~ 317 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE 317 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE
T ss_pred cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE
Confidence 65 588899876543 356788999999999999 9999999999999999999999998874 899999999
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCc
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~ 921 (1101)
|+|||||++|||+|.|++|+||++...
T Consensus 318 v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999753
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=308.35 Aligned_cols=203 Identities=14% Similarity=0.118 Sum_probs=169.2
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 804 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
+...+.+++|||||+++++++ |++|+|||+.+++++..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556688999999999987664 6899999999999998886 777899999999 99999999854 56777777766
Q ss_pred Eee--eecCcccCeeEEEEcCCCCEEEEEeCCC----ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEE
Q 001318 881 VKS--KLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 954 (1101)
Q Consensus 881 ~~~--~l~~h~~~V~~l~~s~dg~~l~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 954 (1101)
.+. ...+|...|.+++|+||++++++++.|+ ++++|++......... .....++. ..|.+++|+|||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~---~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRF---KGITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSC---SCEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCC---CCeEeEEECCCCCce
Confidence 543 4567999999999999999999999887 5888988765432222 22233443 379999999999999
Q ss_pred EE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 955 LV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 955 a~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
|+ +.|+.|+|||+.+++++..+. .+|...|++++|||||++||+||.|++|+|||+...
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 589999999999999988753 389999999999999999999999999999999654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=319.85 Aligned_cols=257 Identities=14% Similarity=0.124 Sum_probs=195.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCc--ceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
+.+.|++++|+|+|++ |++|+.|+.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~~-l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTE-FVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSSE-EECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCCE-EEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 5679999999999995 999999999999999887 3332 47899999999999999999
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc---eEEEecC-ccc
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEG-HEA 497 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-h~~ 497 (1101)
|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873333446788999999999999999 79999999999999999887 4778887 999
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCC--CC--ceeEEEEccCCceEEeccccCceeEEEEcCCC
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GR--WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~--~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1101)
.|.+++|+ +++.+|++++.|+.|++||+...+........ .. ....+. ..+ .+...+.+++|+|++
T Consensus 148 ~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 148 TILSLDWH--PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC------AEY--PSGGWVHAVGFSPSG 217 (377)
T ss_dssp CEEEEEEC--TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE------ECC--CCSSSEEEEEECTTS
T ss_pred CeEEEEEc--CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh------hcc--cCCceEEEEEECCCC
Confidence 99999986 45689999999999999999753321110000 00 000000 011 223467778888888
Q ss_pred CEEEEEeCCCcEEEEECCCCce----eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
++|++++.||.|++||+.+++. +..+..+. ..|.+++|+|++++|++++.++.+ +|+..
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8999999999999999999987 66666554 479999999999999999876666 66554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=295.97 Aligned_cols=245 Identities=17% Similarity=0.226 Sum_probs=204.8
Q ss_pred eeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 338 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 338 ~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
...+.+|.+.|++++| |++++ |++|+.||.|++||+.+++... .+..|...|.+++|+|
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~~~ 69 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCYDS 69 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEEET
T ss_pred HHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEECC
Confidence 3344569999999999 99995 9999999999999998877655 3667899999999999
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 497 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 497 (1101)
++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|..
T Consensus 70 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~~~ 143 (313)
T 3odt_A 70 EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAHNA 143 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence 9999999999999999999876544444568899999999999 456 799999999999999 7888889999999
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC-CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
.+.+++|.+ .++.++++++.||.|++||.. .....+.. +...+.+ ++++|++. +
T Consensus 144 ~v~~~~~~~-~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~---------------------~~~~~~~~-~ 198 (313)
T 3odt_A 144 SVWDAKVVS-FSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRH---------------------LAVVDDGH-F 198 (313)
T ss_dssp CEEEEEEEE-TTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEE---------------------EEEEETTE-E
T ss_pred ceeEEEEcc-CCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEE---------------------EEEcCCCe-E
Confidence 999999875 245799999999999999932 33333333 4444444 44555545 8
Q ss_pred EEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++++.||.|++||+++++.+..+..+.. .|.+++|+|++ .|++++.||.|++||+.++
T Consensus 199 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 199 ISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEccCCCeEEEEECCchhhhhhhhcCCc--eEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 9999999999999999999999986644 79999999999 5889999999999998876
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=312.33 Aligned_cols=259 Identities=12% Similarity=0.081 Sum_probs=209.6
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC--
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-- 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 418 (1101)
..+|.+.|++++|+| + +|++|+.||.|+|||+.+++..... .....+.+|...|.+++|+|+
T Consensus 12 ~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPK-------------DKSYSHFVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp SSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGG-------------GGEEEEECCTTCEEEEEEEEEEE
T ss_pred hhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCC-------------CcceEEecCCCcEEEEEEecccc
Confidence 346999999999999 4 5999999999999999987611100 000136789999999999999
Q ss_pred --C---CeEEEEEcCCeEEEEEccCCce-----eeeeeeeccc-----cCCeeEEEEc----CCCCeEE-EEEecCCCcE
Q 001318 419 --G---SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAH-----VGGVNDIAFS----HPNKQLC-VITCGDDKTI 478 (1101)
Q Consensus 419 --g---~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~~~~s----~d~~~~~-l~s~~~d~~i 478 (1101)
| ++|++++.|+.|++||+.+++. +. .+.+| ...|.+++|+ |+++ + |++++.|+.|
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i 150 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTT 150 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCE
T ss_pred cCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcE
Confidence 9 9999999999999999998875 43 56677 6999999999 9999 7 9999999999
Q ss_pred EEEeCCC------CceEE-----Ee-------cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC--
Q 001318 479 KVWDATN------GAKQY-----IF-------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-- 538 (1101)
Q Consensus 479 ~iwd~~~------~~~~~-----~~-------~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-- 538 (1101)
++||+.+ ++.+. .+ ..|...|.+++|+ +++ ++++++.||.|++||+++.+....+..
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 227 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERG-LIATGFNNGTVQISELSTLRPLYNFESQH 227 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC--TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC--CCc-eEEEEeCCCcEEEEECCCCceeEEEeccc
Confidence 9999998 77766 77 4488999999985 566 999999999999999998776666655
Q ss_pred -C---CCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCC--------
Q 001318 539 -P---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADG-------- 603 (1101)
Q Consensus 539 -~---~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-------- 603 (1101)
| ...+. +++|+|++++|++++.| +.|++||+.+++.+..+....
T Consensus 228 ~h~~~~~~i~---------------------~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 286 (397)
T 1sq9_A 228 SMINNSNSIR---------------------SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 286 (397)
T ss_dssp ---CCCCCEE---------------------EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred cccccCCccc---------------------eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccc
Confidence 4 44444 45555555689999999 999999999999999887611
Q ss_pred ---CCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccc
Q 001318 604 ---GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 604 ---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
+...|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 287 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~ 330 (397)
T 1sq9_A 287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLN 330 (397)
T ss_dssp CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred ccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEe
Confidence 3447999999999999999999999999999887 4444443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=306.66 Aligned_cols=293 Identities=16% Similarity=0.217 Sum_probs=239.4
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.+...-+|...+.+.++++++.. +++++.|+.|+|||+.+++.... ....|...|.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s 143 (401)
T 4aez_A 83 RVLDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWS 143 (401)
T ss_dssp EEEECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEEC
T ss_pred eeeeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEEC
Confidence 33444456665444444444454 67788999999999999887653 233489999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC-CCceEEEecCc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGH 495 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h 495 (1101)
|+|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++||++ .+..+..+.+|
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred CCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 999999999999999999999987665 577999999999994 45 79999999999999999 56778889999
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
.+.|.+++|++ ++.+|++++.||.|++||+.+......+..+...+.+++|+|++. ..
T Consensus 217 ~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~--------------------~l 274 (401)
T 4aez_A 217 SSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS--------------------NL 274 (401)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--------------------TE
T ss_pred CCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--------------------CE
Confidence 99999999864 668999999999999999999888888888888888888877765 45
Q ss_pred EEEEe--CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE--eCCCcEEEEEecCccccccccccccccc
Q 001318 576 FLAAG--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDA 651 (1101)
Q Consensus 576 l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 651 (1101)
+++++ .|+.|++||+.+++.+..+... ..+.+++|+|++++++++ +.||.|++|++.++ ......
T Consensus 275 l~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-~~~~~~------- 343 (401)
T 4aez_A 275 LATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQV------- 343 (401)
T ss_dssp EEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-EEEEEE-------
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-cceeEE-------
Confidence 66665 7999999999999999888743 359999999999999995 48999999998765 111110
Q ss_pred cccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccc
Q 001318 652 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 731 (1101)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 731 (1101)
.+
T Consensus 344 -----------------------------------------------------------------~~------------- 345 (401)
T 4aez_A 344 -----------------------------------------------------------------DI------------- 345 (401)
T ss_dssp -----------------------------------------------------------------EE-------------
T ss_pred -----------------------------------------------------------------Ee-------------
Confidence 00
Q ss_pred cCccccccceEEEEEcCCCceEEeeecCceEEeeeccc
Q 001318 732 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 769 (1101)
Q Consensus 732 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 769 (1101)
.+|...|.+++|+|++.+|++++.||.|++|++..
T Consensus 346 ---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 346 ---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp ---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred ---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 12677899999999999999999999999999843
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-34 Score=318.13 Aligned_cols=222 Identities=8% Similarity=-0.029 Sum_probs=172.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
-...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|||
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 458899999999999 599999999999 7544432 46899999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc-----C
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----P 498 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-----~ 498 (1101)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||.|++||.+. ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 4555555554432211 12 5688999999999999 799999999999999544 777777 765 4
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCc-------eeee----cCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-------RVDY----EAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
|.+++|+ ++|++|++|+.||+|++||+.++.. ..++ .+|.. .+..+
T Consensus 132 v~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~---------------------~V~sV 188 (588)
T 2j04_A 132 YHCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD---------------------WVTHI 188 (588)
T ss_dssp EEEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC---------------------CEEEE
T ss_pred EEEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc---------------------cEEEE
Confidence 9999984 5678999999999999999987542 2232 22333 55566
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCce---eEEEc-CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+|+|+| +++++.|++|++||+.++.. ..++. +| ...|.+++|+ |+.|++++ +++|++||+.++
T Consensus 189 awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 189 VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred EEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc--cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 666776 78889999999999988774 34553 33 3479999999 68999887 699999998876
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=292.57 Aligned_cols=285 Identities=14% Similarity=0.189 Sum_probs=238.7
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
...++.+|.+.|++++| ++++ +|++++.||.|++||+.+++....+..|...|.+++|+ +++.++++++.||.|+
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~--~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDS--KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYD--SEKELLLFGGKDTMIN 84 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETT--EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEE--TTTTEEEEEETTSCEE
T ss_pred HHHHhhCCCCCcEEEEe-cCCC--EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEEC--CCCCEEEEecCCCeEE
Confidence 34468899999999999 8888 79999999999999999999999999999999999986 4668999999999999
Q ss_pred EEecCCCC---ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 001318 524 AWLYDNLG---SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 600 (1101)
Q Consensus 524 ~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1101)
+|++.... ....+..|...+.++.| +++.+++++.|+.|++|| .++.+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------------------~~~~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSF-----------------------QDGVVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEE-----------------------ETTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEe-----------------------cCCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence 99987642 34445555555555554 235799999999999999 677777777
Q ss_pred CCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccc
Q 001318 601 ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 679 (1101)
Q Consensus 601 ~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
.+. ..+.++.|.| +++++++++.||.|++||.... ...+.
T Consensus 140 ~~~--~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~---------------------------------- 180 (313)
T 3odt_A 140 AHN--ASVWDAKVVSFSENKFLTASADKTIKLWQNDKV---IKTFS---------------------------------- 180 (313)
T ss_dssp CCS--SCEEEEEEEETTTTEEEEEETTSCEEEEETTEE---EEEEC----------------------------------
T ss_pred cCC--CceeEEEEccCCCCEEEEEECCCCEEEEecCce---EEEEe----------------------------------
Confidence 554 4789999998 9999999999999999982211 00000
Q ss_pred cccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC
Q 001318 680 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 759 (1101)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 759 (1101)
T Consensus 181 -------------------------------------------------------------------------------- 180 (313)
T 3odt_A 181 -------------------------------------------------------------------------------- 180 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce
Q 001318 760 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 838 (1101)
Q Consensus 760 g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 838 (1101)
..|...+.+++|+|++. +++++ ||.|++||+.+++.
T Consensus 181 ------------------------------------------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 181 ------------------------------------------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp ------------------------------------------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred ------------------------------------------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence 00456688888888888 66666 89999999999999
Q ss_pred eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 839 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 839 ~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+..+.+|...|++++|+| ++ .|++++.||.|++||+.+++++..+..|...|++++|+|+++ +++++.|+.|++||+
T Consensus 218 ~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred hhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 999999999999999999 77 588999999999999999999999999999999999999998 667999999999999
Q ss_pred CCccc
Q 001318 919 DGWEK 923 (1101)
Q Consensus 919 ~~~~~ 923 (1101)
.+++.
T Consensus 295 ~~~~~ 299 (313)
T 3odt_A 295 EKSRW 299 (313)
T ss_dssp CGGGC
T ss_pred CCCce
Confidence 98654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-31 Score=303.63 Aligned_cols=239 Identities=17% Similarity=0.234 Sum_probs=198.7
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 426 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 426 (1101)
-.+.|+||+++ +||+|. |++|+|||+.+++..... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999865 578775 899999999999876531 1467889999999999999999999
Q ss_pred cCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ceEEEecCcccCeEEEeee
Q 001318 427 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVCPH 505 (1101)
Q Consensus 427 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~ 505 (1101)
.||+|+|||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999998766 578999999998885 45 7999999999999998864 4567889999999999874
Q ss_pred ecCCccEEEEEecCCcEEEEecCCCCc----eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE--E
Q 001318 506 HKENIQFIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA--A 579 (1101)
Q Consensus 506 ~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ 579 (1101)
+++.++++++.|+.+++|+....+. ......+...|.+++|+|++. ..+++ |
T Consensus 240 --~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~--------------------~~la~~~g 297 (420)
T 4gga_A 240 --PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS--------------------NVLATGGG 297 (420)
T ss_dssp --TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT--------------------TEEEEEEC
T ss_pred --CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc--------------------cEEEEEee
Confidence 5668999999999999999987653 334556666777777777665 34544 4
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEe--CCCcEEEEEecCc
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDG 637 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~ 637 (1101)
+.|+.|++||+.+++++..+..+. .+.++.|+++++.+++++ .|+.|++||+.++
T Consensus 298 s~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 298 TSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp TTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 579999999999999999887654 488999999999998875 6899999998766
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=312.64 Aligned_cols=245 Identities=14% Similarity=0.154 Sum_probs=195.0
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
+...|.+++|+|++++|++++.|+.|++|++..... .. ...+. +|...|.+++|+|+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--------------------~~-~~~~~--~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW--------------------KH-ARTFS--DHDKIVTCVDWAPK 66 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE--------------------EE-CCCBC--CCSSCEEEEEECTT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce--------------------EE-EEEEe--cCCceEEEEEEeCC
Confidence 557899999999999999999999999999843210 11 11122 38999999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCc---eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce---EeeeecC-c
Q 001318 817 DSYVMSAS-GGKISLFNMMTFK---TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKG-H 888 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~---~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---~~~~l~~-h 888 (1101)
+++|++++ |+.|++||+.+++ ....+.+|...|.+++|+| ++++|++|+.||.|++||+.+++ +...+.+ |
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h 145 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL 145 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence 99999999 8999999999877 6777888999999999999 89999999999999999999877 4677877 9
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccc-------------cceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 889 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-------------KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 889 ~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
...|++++|+|++++|++++.|++|++||+...+.. ...+.... +|. ..|.+++|+|+|++|+
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALA 221 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEE
Confidence 999999999999999999999999999998643211 12233333 444 4899999999999999
Q ss_pred E-EeCCeEEEEEcCCcee----eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 956 V-VHETQLAIFETTKLEC----VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 956 ~-~~d~~v~vwd~~~~~~----~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
+ +.|+.|++||+.+++. +..+. +|...|.+++|+|||++|++++.|+.+ +|+..
T Consensus 222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8 5899999999999887 55554 789999999999999999999877666 66654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-31 Score=303.48 Aligned_cols=298 Identities=15% Similarity=0.214 Sum_probs=225.3
Q ss_pred CeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
.+..|+||++ ++||+|. |++|+|||..+|+.... ..+.+|...|++|+|+|+|+ +|++|+.|++|+|||+.++++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 5678999986 4777765 99999999999986643 35668889999999999999 899999999999999999999
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCce-eeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
+..+.+|...+.++.++ +.++++|+.|+.+++||....... ..+..|...+.. +
T Consensus 182 ~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~---------------------~ 236 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG---------------------L 236 (420)
T ss_dssp EEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE---------------------E
T ss_pred EEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccceee---------------------e
Confidence 99999999999988763 368999999999999998875433 344555554444 4
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCce----eEEEcCCCCCCCcCeEEEccCC-CEEEEE--eCCCcEEEEEecCcccc
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDG-CLLAVS--TNDNGIKILATSDGIRL 640 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~--~~dg~i~iw~~~~~~~~ 640 (1101)
.++|+++++++++.|+.+++|+..+++. +..... +...|.+++|+|++ .+++++ +.|++|++||+.++ ..
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~ 313 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ--HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-AC 313 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC--CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EE
T ss_pred eecCCCCeeeeeeccccceEEeeccccccceeeeeecc--cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-cc
Confidence 5555556899999999999999987653 344443 34478999999954 555554 47899999998766 11
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
...+.
T Consensus 314 ~~~~~--------------------------------------------------------------------------- 318 (420)
T 4gga_A 314 LSAVD--------------------------------------------------------------------------- 318 (420)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred ceeec---------------------------------------------------------------------------
Confidence 11000
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
T Consensus 319 -------------------------------------------------------------------------------- 318 (420)
T 4gga_A 319 -------------------------------------------------------------------------------- 318 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+...+.++.|+++++.+++++ |+.|+|||+.+++++.++.+|.+.|++++|+| ++++||+|+.||+|+|||+.
T Consensus 319 ---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 319 ---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF 394 (420)
T ss_dssp ---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred ---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence 233466777788888777654 68999999999999999999999999999999 99999999999999999998
Q ss_pred cceEeeeecCcccCeeEEEEc
Q 001318 878 VDEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s 898 (1101)
..........+...+....|.
T Consensus 395 ~~~~~~~~~~~~~~~~~~s~~ 415 (420)
T 4gga_A 395 ELDPARRREREKASAAKSSLI 415 (420)
T ss_dssp CSSCC----------------
T ss_pred CCCccchhhhccCCccccccC
Confidence 766666665565555444443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-31 Score=289.51 Aligned_cols=283 Identities=18% Similarity=0.244 Sum_probs=217.8
Q ss_pred CeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
...+|+||+++ +||+| .|++|+|||+.+++.++.. .+.+|...|++++|+|+++ +|++|+.|++|++||++++++
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCcee
Confidence 35789999986 77765 5999999999999876533 4668889999999999999 899999999999999999999
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
+..+.+|...+.++.+ . +..+++++.++.+++|+.....
T Consensus 102 ~~~~~~h~~~~~~~~~--~--~~~l~s~~~~~~~~~~~~~~~~------------------------------------- 140 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSW--N--SYILSSGSRSGHIHHHDVRVAE------------------------------------- 140 (318)
T ss_dssp EEEEECCSSCEEEEEE--E--TTEEEEEETTSEEEEEETTSSS-------------------------------------
T ss_pred EEEecCccceEEEeec--C--CCEEEEEecCCceEeeecCCCc-------------------------------------
Confidence 9999999988876653 2 2578888888877777655321
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccc
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 648 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 648 (1101)
..+..+..+ ...+..+.+++++++|++++.||.|++||+.++.........
T Consensus 141 -------------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-- 191 (318)
T 4ggc_A 141 -------------------------HHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-- 191 (318)
T ss_dssp -------------------------CEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE--
T ss_pred -------------------------eeEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee--
Confidence 112223323 335788999999999999999999999998776211100000
Q ss_pred ccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccc
Q 001318 649 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 728 (1101)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 728 (1101)
T Consensus 192 -------------------------------------------------------------------------------- 191 (318)
T 4ggc_A 192 -------------------------------------------------------------------------------- 191 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCe
Q 001318 729 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 808 (1101)
Q Consensus 729 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i 808 (1101)
... +...|
T Consensus 192 -----~~~-------------------------------------------------------------------~~~~v 199 (318)
T 4ggc_A 192 -----FTQ-------------------------------------------------------------------HQGAV 199 (318)
T ss_dssp -----ECC-------------------------------------------------------------------CCSCE
T ss_pred -----ecc-------------------------------------------------------------------cCCce
Confidence 000 33344
Q ss_pred eEEEEecCCCEE---EEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe--ccCeEEEEEeecceEe
Q 001318 809 PCFALSKNDSYV---MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 809 ~~~~~s~dg~~l---a~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~~~~~ 882 (1101)
.++++++++..+ ++++ ++.|++||........... +...+..+.|++ ++..+++++ .||.|+|||+.+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEE
Confidence 555555544322 2333 6889999998877666554 667799999999 666666544 7999999999999999
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
.++.+|.+.|++|+|+|||++|||+|.|++|+|||+..
T Consensus 278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999999999999999999999999999999999865
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-31 Score=301.81 Aligned_cols=291 Identities=13% Similarity=0.131 Sum_probs=223.3
Q ss_pred cCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC
Q 001318 404 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 483 (1101)
Q Consensus 404 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 483 (1101)
.+|...+.+.++++++..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYDV 163 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEET
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEEC
Confidence 456655544444444577889999999999999998866532 224889999999999999 7999999999999999
Q ss_pred CCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC-CCceeeecCCCCceeEEEEccCCceEEeccccC
Q 001318 484 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 562 (1101)
Q Consensus 484 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 562 (1101)
.+++.+..+.+|...|.+++|. +.++++++.||.|++||++. ......+..|...|.+++|
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-------------- 225 (401)
T 4aez_A 164 ESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW-------------- 225 (401)
T ss_dssp TTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE--------------
T ss_pred cCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEE--------------
Confidence 9999999999999999999982 36999999999999999985 3344455555555555554
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC-CEEEEEe--CCCcEEEEEecCccc
Q 001318 563 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVST--NDNGIKILATSDGIR 639 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~dg~i~iw~~~~~~~ 639 (1101)
+|++++|++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++ .++++++ .|+.|++||+.++ .
T Consensus 226 -------~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~ 295 (401)
T 4aez_A 226 -------RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-A 295 (401)
T ss_dssp -------CTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-C
T ss_pred -------cCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-C
Confidence 5555689999999999999999999988887554 479999999976 4566654 6999999998765 1
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
.+..+.
T Consensus 296 ~~~~~~-------------------------------------------------------------------------- 301 (401)
T 4aez_A 296 RVNTVD-------------------------------------------------------------------------- 301 (401)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 111000
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
T Consensus 302 -------------------------------------------------------------------------------- 301 (401)
T 4aez_A 302 -------------------------------------------------------------------------------- 301 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEE--e-CCeEEEEECCCCceee--EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEE
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSA--S-GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 874 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~--s-dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 874 (1101)
+...+.+++|+|++++++++ + ||.|++||+.+++... .+.+|...|.+++|+| ++++|++++.||.|++|
T Consensus 302 ----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 302 ----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLKFW 376 (401)
T ss_dssp ----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEEEE
T ss_pred ----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEEEE
Confidence 23346667777777777763 2 6788888887754443 4678999999999999 99999999999999999
Q ss_pred EeecceEeeee
Q 001318 875 NVRVDEVKSKL 885 (1101)
Q Consensus 875 d~~~~~~~~~l 885 (1101)
|+.+++.+...
T Consensus 377 ~~~~~~~~~~~ 387 (401)
T 4aez_A 377 RVYDGDHVKRP 387 (401)
T ss_dssp ECCC-------
T ss_pred ECCCCcccccc
Confidence 99998877654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-31 Score=287.75 Aligned_cols=252 Identities=12% Similarity=0.110 Sum_probs=205.2
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC--CceeeEecCCCCCeEEEEEecC-CCcEEEEEeccCeEEEEEeec
Q 001318 803 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~sp~-d~~~lasg~~dg~v~vwd~~~ 878 (1101)
+|...|.+++|+|+|++||+|+ |++|++||+.+ .+.+.++.+|...|.+++|+++ ++++||+|+.||+|+|||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 3999999999999999999999 99999999974 4678899999999999999862 388999999999999999988
Q ss_pred ce--EeeeecCcccCeeEEEEcCC--CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC----
Q 001318 879 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---- 950 (1101)
Q Consensus 879 ~~--~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---- 950 (1101)
++ .+..+.+|...|.+++|+|+ |.+|++++.|++|++||+.++..... ....+|. ..|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~---~~~~~h~---~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP---IIIDAHA---IGVNSASWAPATIEE 160 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC---EEEECCS---SCEEEEEECCCC---
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee---eeeeccc---CccceEeecCCcccc
Confidence 74 56677889999999999998 89999999999999999987532211 2233444 37899999997
Q ss_pred ---------CcEEEE-EeCCeEEEEEcCCce----eeeeccCCCCCCCeeEEEEcCCC---CEEEEEEcCCeEEEEEcCC
Q 001318 951 ---------QIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 951 ---------g~~la~-~~d~~v~vwd~~~~~----~~~~~~~~~h~~~i~~l~~spdg---~~l~s~s~dg~v~vwd~~~ 1013 (1101)
+++|++ +.|+.|++||+.+++ ....+ .+|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 568888 589999999998765 44444 4899999999999995 8999999999999999987
Q ss_pred cee--e-eecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCcccc
Q 001318 1014 LKL--R-CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1072 (1101)
Q Consensus 1014 ~~~--~-~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~~ 1072 (1101)
+.. . ..+. ..+| ...++ +++|+| ++++|++++.||.|++|+.... +.|.
T Consensus 239 ~~~~~~~~~~~-----~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~~-g~w~ 290 (297)
T 2pm7_B 239 EQGPWKKTLLK-----EEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE-GKWE 290 (297)
T ss_dssp TTSCCEEEESS-----SSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECTT-SCEE
T ss_pred CCCccceeeee-----cccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECCC-CcEE
Confidence 531 1 1111 1122 22355 899999 7899999999999999998643 3444
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-31 Score=304.99 Aligned_cols=269 Identities=13% Similarity=0.219 Sum_probs=202.4
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEe---eeeeeeecCCCCcccccccccCCC-----------
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---RNFKVWDLGACSMPLQAALVKDPG----------- 407 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~----------- 407 (1101)
+.|.+.|++++|+|+|++ ||+|+.||.|+|||+.+++.... .+++ ....+.+|.
T Consensus 25 ~~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~~~~~-----------~~~~~~~h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSRGEYN-----------VYSTFQSHEPEFDYLKSLEI 92 (447)
T ss_dssp CCGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCCCCEE-----------EEEEEECCCCEEEGGGTEEE
T ss_pred ccccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCccccccee-----------Eecccccccccccccccccc
Confidence 457899999999999995 99999999999999998763110 0000 011467888
Q ss_pred -CCeEEEEEecCC--CeEEEEEcCCeEEEEEccCCceee------------------------------------eeee-
Q 001318 408 -VSVNRVIWSPDG--SLFGVAYSRHIVQIYSYHGGDEVR------------------------------------QHLE- 447 (1101)
Q Consensus 408 -~~V~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~~~- 447 (1101)
..|.+++|+|++ .+|++++.|++|++||+.+++... ....
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 889999999998 899999999999999998754311 0011
Q ss_pred eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC-CceEE-------EecCcccCeEEEeeeecCCc-cEEEEEec
Q 001318 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQY-------IFEGHEAPVYSVCPHHKENI-QFIFSTAL 518 (1101)
Q Consensus 448 l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~v~~~~~~~~-~~l~s~~~ 518 (1101)
..+|...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++++.
T Consensus 173 ~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~ 247 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSS 247 (447)
T ss_dssp CSCCSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEET
T ss_pred ccCCCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeC
Confidence 368999999999999999 78888 799999999984 44444 2568999999999864 44 79999999
Q ss_pred CCcEEEEecCCCCc----eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC-C
Q 001318 519 DGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-V 593 (1101)
Q Consensus 519 dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~ 593 (1101)
||.|++||+++... ...+..+..... ...+. .....+..++|+|++++|++++. +.|++||+.+ +
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~ 317 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSN--------RSFFS-EIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN 317 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECCC-------------CCHHH-HHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS
T ss_pred CCeEEEEECcCCccccceeeEeccCCCccc--------ccccc-ccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc
Confidence 99999999998765 445554433100 00000 01125666667777778999988 9999999997 8
Q ss_pred ceeEEEcCCCCCCC-------------cCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 594 QLLTSIDADGGLPA-------------SPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 594 ~~~~~~~~~~~~~~-------------v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+++..+..+..... +..++|+|++++|++++.||.|++||+.++
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 318 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 88888876643111 234999999999999999999999999987
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=296.84 Aligned_cols=255 Identities=16% Similarity=0.196 Sum_probs=202.2
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec--CC
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DG 419 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 419 (1101)
.+|.+.|++++|+|+|++ ||+|+.|++|+|||+.+++.... ..+.+|.+.|++++|+| ++
T Consensus 10 ~~H~~~V~~v~~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTR-LATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp ----CCEEEEEECGGGCE-EEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGS
T ss_pred ccccCeEEEeeEcCCCCE-EEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCC
Confidence 369999999999999995 99999999999999987753211 13779999999999986 59
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCeEEEEEecCCCcEEEEeCCCCce---EEEecC
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAK---QYIFEG 494 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~ 494 (1101)
++|++|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...+.+
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred CEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 99999999999999999987422 23357899999999999998 55 799999999999999987642 345678
Q ss_pred cccCeEEEeeeecC---------------CccEEEEEecCCcEEEEecCCCC---ceeeecCCCCceeEEEEccCCceEE
Q 001318 495 HEAPVYSVCPHHKE---------------NIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 495 h~~~v~~v~~~~~~---------------~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
|...|.+++|++.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++.
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~--- 225 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG--- 225 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS---
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC---
Confidence 99999999987652 14689999999999999997542 3445667777777777777651
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 632 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 632 (1101)
.++++|++++.|++|++|++.+.. ....+..+ ...|.+++|+|++++|++++.|+.|++|
T Consensus 226 --------------~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 226 --------------LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp --------------CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred --------------CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 012579999999999999997631 12233333 3479999999999999999999999999
Q ss_pred EecC
Q 001318 633 ATSD 636 (1101)
Q Consensus 633 ~~~~ 636 (1101)
+...
T Consensus 290 ~~~~ 293 (316)
T 3bg1_A 290 KESV 293 (316)
T ss_dssp EECT
T ss_pred EECC
Confidence 9763
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=292.86 Aligned_cols=226 Identities=19% Similarity=0.299 Sum_probs=175.6
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCeEEEEEecCCCcEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK 479 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~ 479 (1101)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 57899999999999999999999999999999999887532 23468899999999999864 66 799999999999
Q ss_pred EEeCCCCc--eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCc---eeeecCCCCceeEEEEccCCce
Q 001318 480 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTR 554 (1101)
Q Consensus 480 iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~ 554 (1101)
+||+++++ .+..+.+|...|.+++|+++.++.+|++|+.|++|++||+..... ...+..|...+.+++|+|++..
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 667888999999999998776678999999999999999987533 2345667778888999887530
Q ss_pred E-EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEEcCCCCCCCcCeEEEccCC----CEEEEEeCC
Q 001318 555 T-YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDG----CLLAVSTND 626 (1101)
Q Consensus 555 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d 626 (1101)
- +..+..+ ....++++|++++.|+.|++||++.. +.+..+..| ...|.+++|+|++ ++|++++.|
T Consensus 165 ~~~~~~~~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCC
Confidence 0 0000000 01122468999999999999999765 345555544 4579999999986 899999999
Q ss_pred CcEEEEEecCc
Q 001318 627 NGIKILATSDG 637 (1101)
Q Consensus 627 g~i~iw~~~~~ 637 (1101)
++|++|++.+.
T Consensus 238 ~~v~iw~~~~~ 248 (316)
T 3bg1_A 238 GRVFIWTCDDA 248 (316)
T ss_dssp CEEEEEECSST
T ss_pred CeEEEEEccCc
Confidence 99999998653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-30 Score=290.18 Aligned_cols=226 Identities=12% Similarity=0.131 Sum_probs=179.8
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcC--CCCeEEEEEecCCCcE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTI 478 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i 478 (1101)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| +++ +|++|+.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 57899999999999999999999999999999999976432 33446789999999999999 577 79999999999
Q ss_pred EEEeCCCC---------ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEc
Q 001318 479 KVWDATNG---------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 549 (1101)
Q Consensus 479 ~iwd~~~~---------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 549 (1101)
++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+++.+....+... ..+..+.+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-ccccccccc
Confidence 99999987 56788899999999999976633689999999999999999887654432210 001111111
Q ss_pred cCCceEEeccccCceeEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC----CEEEE
Q 001318 550 ADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAV 622 (1101)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~ 622 (1101)
+ ......+.+++|+|+ +..+++++.++.+.+|+...++.........+...|.+++|+|++ ++|++
T Consensus 163 ~-------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 163 P-------ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp C-------SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred c-------CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 1 112335667777776 789999999999999998888763333333455689999999998 89999
Q ss_pred EeCCCcEEEEEecCc
Q 001318 623 STNDNGIKILATSDG 637 (1101)
Q Consensus 623 ~~~dg~i~iw~~~~~ 637 (1101)
++.||.|++||+.++
T Consensus 236 ~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 236 GCKDGRIRIFKITEK 250 (351)
T ss_dssp EETTSCEEEEEEEEC
T ss_pred EcCCCeEEEEeCCCC
Confidence 999999999999765
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-30 Score=291.64 Aligned_cols=303 Identities=16% Similarity=0.167 Sum_probs=230.1
Q ss_pred cccCCCCCeEEEEEecC---CCeEEEEEcCCeEEEEEccC-CceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCc
Q 001318 402 LVKDPGVSVNRVIWSPD---GSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 477 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~ 477 (1101)
.+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+. ..+.+|...|.+++|+|+++ +|++++.|+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 47899999999999999 69999999999999999997 44332 25778999999999999999 7999999999
Q ss_pred EEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEe
Q 001318 478 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 478 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
|++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~--------- 178 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADV--------- 178 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEE---------
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEe---------
Confidence 9999999998776 4569999999999777888999999999999999999877766655443 2222222
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCE----EEEEeCCCcEEEEE
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL----LAVSTNDNGIKILA 633 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~iw~ 633 (1101)
....+++++.++.+++|++.................+.++++.++... +++++.||.|++|+
T Consensus 179 --------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 179 --------------IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp --------------ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred --------------cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 224688899999999999987655444332222234455555554443 67777777777777
Q ss_pred ecCcccc--ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC
Q 001318 634 TSDGIRL--LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 711 (1101)
Q Consensus 634 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 711 (1101)
+...... ...+.+
T Consensus 245 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 259 (368)
T 3mmy_A 245 INPPNPAKDNFTFKC----------------------------------------------------------------- 259 (368)
T ss_dssp SSCSCHHHHSEEEEC-----------------------------------------------------------------
T ss_pred cCCCCccccceeeee-----------------------------------------------------------------
Confidence 6543100 000000
Q ss_pred cceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCC
Q 001318 712 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 791 (1101)
Q Consensus 712 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~ 791 (1101)
T Consensus 260 -------------------------------------------------------------------------------- 259 (368)
T 3mmy_A 260 -------------------------------------------------------------------------------- 259 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeE
Q 001318 792 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSI 871 (1101)
Q Consensus 792 g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v 871 (1101)
|... .......+|...|++++|+| ++++|++|+.||.|
T Consensus 260 ------------~~~~-----------------------------~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i 297 (368)
T 3mmy_A 260 ------------HRSN-----------------------------GTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRF 297 (368)
T ss_dssp ------------SEEC---------------------------------CCCEEECCEEEEEECT-TTCCEEEEETTSCE
T ss_pred ------------eecc-----------------------------cccccccccccceEEEEEec-CCCEEEEEccCCeE
Confidence 0000 00000122345799999999 89999999999999
Q ss_pred EEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 872 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 872 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
++||+.+++++..+.+|...|++++|+|||++|++++.|+..+.|++-.
T Consensus 298 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 298 SFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 9999999999999999999999999999999999999998766665544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-30 Score=287.75 Aligned_cols=294 Identities=13% Similarity=0.098 Sum_probs=230.3
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
+..+|.+.|++++|+|++++|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence 35689999999999999999999999999999999988732223345689999999999999872 38899999999999
Q ss_pred eC-CCCceEEEecC--cccCeEEEeeeecCCccEEEEEecCCcEEEEecCC---------CCceeeecCCCCceeEEEEc
Q 001318 482 DA-TNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN---------LGSRVDYEAPGRWCTTMAYS 549 (1101)
Q Consensus 482 d~-~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s 549 (1101)
|+ .+++. ..+.+ |...|.+++|++ +.++++++.|+.|++||+++ .+....+. +...
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~------- 152 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK------- 152 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC-------
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc-------
Confidence 99 77755 77888 999999999975 57999999999999999886 44433333 3333
Q ss_pred cCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCC
Q 001318 550 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN 627 (1101)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 627 (1101)
+.++++++++ +++++.|+.|++||+++ +..........+...+.+++|+| +++++++++.||
T Consensus 153 --------------v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 153 --------------IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp --------------EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred --------------eEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 4445555554 89999999999999998 55432222223344789999999 999999999999
Q ss_pred cEEEEEecCcc-----ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCcc
Q 001318 628 GIKILATSDGI-----RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 702 (1101)
Q Consensus 628 ~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1101)
.|++|++.... .....+..|..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 243 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRL----------------------------------------------------- 243 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCC-----------------------------------------------------
T ss_pred cEEEEEEcCCCcccccccceeeecccc-----------------------------------------------------
Confidence 99999986540 11111100000
Q ss_pred ceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeee
Q 001318 703 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 782 (1101)
Q Consensus 703 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 782 (1101)
.
T Consensus 244 -------------------------------------~------------------------------------------ 244 (342)
T 1yfq_A 244 -------------------------------------N------------------------------------------ 244 (342)
T ss_dssp -------------------------------------C------------------------------------------
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred cCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC-CCCeEEEEEecCCCc
Q 001318 783 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNN 860 (1101)
Q Consensus 783 ~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~ 860 (1101)
..+..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+.+| ...|.+++ | +++
T Consensus 245 ----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~ 305 (342)
T 1yfq_A 245 ----------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDN 305 (342)
T ss_dssp ----------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSS
T ss_pred ----------------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCC
Confidence 00012677899999999999999998 899999999999999999998 99999999 7 899
Q ss_pred EEEEEeccCe-EEEEE
Q 001318 861 IIAIGMDDSS-IQIYN 875 (1101)
Q Consensus 861 ~lasg~~dg~-v~vwd 875 (1101)
+|++|+.||. .+.|.
T Consensus 306 ~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 306 ILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEEECTHHHHCSS
T ss_pred eEEEEecCCccccccc
Confidence 9999999998 44433
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=278.30 Aligned_cols=282 Identities=17% Similarity=0.286 Sum_probs=229.7
Q ss_pred eEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEE
Q 001318 741 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 820 (1101)
Q Consensus 741 i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~l 820 (1101)
...++||+++ +++++.|++|+|||+. +|..+.. +...+|...|.+++|+|+++++
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCEE
Confidence 4678999886 4555679999999873 3433221 2223488899999999999999
Q ss_pred EEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeeecCcccCeeEEEEc
Q 001318 821 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 821 a~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~s 898 (1101)
++|+ ||+|++||+.+++.+..+.+|...+.++.+. +.++++|+.++.+++|+.... ..+..+.+|...+..+.|+
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 9999 9999999999999999999999888776654 579999999999999998865 5667789999999999999
Q ss_pred CCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE----EeCCeEEEEEcCCceeee
Q 001318 899 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFETTKLECVK 974 (1101)
Q Consensus 899 ~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~----~~d~~v~vwd~~~~~~~~ 974 (1101)
+++++|++++.|++|++||+.+++........ ...+. ..|..++++|++..++. +.++.|++||........
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~ 235 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceee-ecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence 99999999999999999999987643322222 22222 47899999998765543 257899999999888776
Q ss_pred eccCCCCCCCeeEEEEcCCCCEEEEEE--cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 975 QWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 975 ~~~~~~h~~~i~~l~~spdg~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
.. .|...+..+.|+|++..+++++ .|+.|+|||+.+++.+..+. +|.+. |. +++|+| |+++|++
T Consensus 236 ~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~-V~--~l~~sp-dg~~l~S 301 (318)
T 4ggc_A 236 AV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSR-VL--SLTMSP-DGATVAS 301 (318)
T ss_dssp EE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSC-EE--EEEECT-TSSCEEE
T ss_pred cc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEE
Confidence 65 3577899999999999888765 79999999999999999887 44443 66 899999 7899999
Q ss_pred EecCCcEEEEeccCCC
Q 001318 1053 GLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1053 ~~~dg~v~vW~~~~~~ 1068 (1101)
|+.||+|++||+.+.+
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999997654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=293.58 Aligned_cols=233 Identities=20% Similarity=0.340 Sum_probs=203.4
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
+|...|.|++| ++++ +++|+.||.|++||+.+++... .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~~-l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQK-IVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSSE-EEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCCE-EEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 46778998877 7884 9999999999999999988766 37899999999999 89999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE---EEecCcccCe
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---YIFEGHEAPV 499 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v 499 (1101)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . ++++|+.|+.|++||+.++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999998665 5778999999999974 4 6999999999999999988766 6788999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.+++| ++.++++|+.||.|++||+.+.+....+..|...+.++.+. ++++++|
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~g 312 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSG 312 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-----------------------CCEEEEE
Confidence 99987 34799999999999999999988887777777766666552 3579999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+.||.|++||+.+++.+..+..+.. .|.+++| ++++|++|+.||.|++||+.++
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred eCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 9999999999999999999986544 6888888 8899999999999999998765
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=295.90 Aligned_cols=304 Identities=12% Similarity=0.125 Sum_probs=223.8
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcc-ccccccCCCCCC----------
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPE---------- 805 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~-~~~~~~~~~~~~---------- 805 (1101)
+...|.+++|+|+|++|++++.||.|++|++......... ..+. .....+.+ |.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~--h~~~~~~~~~~~ 91 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-------------SRGEYNVYSTFQS--HEPEFDYLKSLE 91 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-------------CCCCEEEEEEEEC--CCCEEEGGGTEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-------------cccceeEeccccc--cccccccccccc
Confidence 6789999999999999999999999999998643210000 0000 01111222 65
Q ss_pred --CCeeEEEEecCC--CEEEEEe-CCeEEEEECCCCcee---------------------------------------eE
Q 001318 806 --EAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTM---------------------------------------AT 841 (1101)
Q Consensus 806 --~~i~~~~~s~dg--~~la~~s-dg~i~vwd~~~~~~~---------------------------------------~~ 841 (1101)
..|.+++|+|++ .++++++ |+.|++||+.++... +.
T Consensus 92 ~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp ECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred ccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 889999999998 7888888 999999999764432 12
Q ss_pred -ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-ceEee-------eecCcccCeeEEEEcCCC-CEEEEEeCCC
Q 001318 842 -FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS-------KLKGHSKRITGLAFSHAL-NVLVSSGADS 911 (1101)
Q Consensus 842 -~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~-------~l~~h~~~V~~l~~s~dg-~~l~s~s~D~ 911 (1101)
..+|...|.+++|+| ++++|++| .||.|++||+.+ ++.+. .+.+|...|++++|+|++ .+|++++.|+
T Consensus 172 ~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 172 FANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp ECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred eccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence 367999999999999 89999999 799999999984 44444 467899999999999998 9999999999
Q ss_pred ceEEEeCCCcccccceeeecCCCCCCC---------CCCCeEEEEcCCCcEEEEEeCCeEEEEEcCC-ceeeeeccCCCC
Q 001318 912 QLCVWSSDGWEKQKNRFLQIPTGRTPT---------AQSDTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRES 981 (1101)
Q Consensus 912 ~v~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~-~~~~~~~~~~~h 981 (1101)
+|++||+.+++.... ......++... ...|.+++|+|+|++|+++.++.|++||+.+ ++.+..+. +|
T Consensus 250 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~--~~ 326 (447)
T 3dw8_B 250 TIRLCDMRASALCDR-HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ--VH 326 (447)
T ss_dssp CEEEEETTTCSSSCT-TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE--SC
T ss_pred eEEEEECcCCccccc-eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee--cc
Confidence 999999998663211 12222333210 0278999999999999997669999999997 77777766 44
Q ss_pred CCC---------------eeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCc------ccC-------------
Q 001318 982 SAP---------------ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA------YLP------------- 1027 (1101)
Q Consensus 982 ~~~---------------i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~------~~~------------- 1027 (1101)
... +..++|+||+++|++|+.||.|++||+.+++.+....... ..+
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 321 3459999999999999999999999999998764211000 000
Q ss_pred -----CCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1028 -----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1028 -----~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
.-.... ..+.++|+| ++++|++++.++ +++|.-
T Consensus 407 ~~~~~~~~~~~--~i~~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNK--KILHTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTS--CCCEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCC--ceeEEEECC-CCCEEEEEecce-eeeecc
Confidence 000011 234899999 688999988776 777764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-30 Score=294.22 Aligned_cols=275 Identities=21% Similarity=0.319 Sum_probs=229.0
Q ss_pred eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEec
Q 001318 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527 (1101)
Q Consensus 448 l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~ 527 (1101)
..+|...|.+++| +++ ++++|+.|+.|++||+.+++.+..+.+|.+.|.+++| ++.+|++|+.||+|++||+
T Consensus 129 ~~~~~~~v~~~~~--d~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred ccCCCCcEEEEEE--CCC--EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE----CCCEEEEEcCCCeEEEEEC
Confidence 4467788999988 677 7999999999999999999999999999999999987 4579999999999999999
Q ss_pred CCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEEcCCCC
Q 001318 528 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGG 604 (1101)
Q Consensus 528 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~ 604 (1101)
.+++....+..|...|.+++|++ +.+++++.||.|++||+.+++.. ..+..+
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~-----------------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-- 255 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN-----------------------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-- 255 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT-----------------------TEEEEEETTSCEEEEECSSSSCCEEEEEECCC--
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC-----------------------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC--
Confidence 99888888887777777776642 36999999999999999988765 444444
Q ss_pred CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccc
Q 001318 605 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 684 (1101)
Q Consensus 605 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1101)
...|.+++| +++++++++.||.|++||+.++ +.+..+.
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~--------------------------------------- 293 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLN--------------------------------------- 293 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEE---------------------------------------
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-cEEEEEc---------------------------------------
Confidence 446888888 7889999999999999998665 2111110
Q ss_pred ccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEe
Q 001318 685 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 764 (1101)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 764 (1101)
T Consensus 294 -------------------------------------------------------------------------------- 293 (435)
T 1p22_A 294 -------------------------------------------------------------------------------- 293 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEec
Q 001318 765 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 843 (1101)
Q Consensus 765 w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 843 (1101)
+|...|.++++ +++++++|+ ||.|++||+.+++++.++.
T Consensus 294 --------------------------------------~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 294 --------------------------------------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE 333 (435)
T ss_dssp --------------------------------------CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred --------------------------------------CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence 04555666766 467888888 8999999999999999999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce---------EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceE
Q 001318 844 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 914 (1101)
Q Consensus 844 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~ 914 (1101)
+|...|.+++| ++++|++|+.||.|++||+.+++ ++..+.+|.+.|++++| ++.+|++++.||+|+
T Consensus 334 ~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~ 408 (435)
T 1p22_A 334 GHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL 408 (435)
T ss_dssp CCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred CCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEE
Confidence 99999999998 46799999999999999998876 88899999999999999 788999999999999
Q ss_pred EEeCCCcc
Q 001318 915 VWSSDGWE 922 (1101)
Q Consensus 915 iwd~~~~~ 922 (1101)
+||+.+..
T Consensus 409 iwd~~~~~ 416 (435)
T 1p22_A 409 IWDFLNDP 416 (435)
T ss_dssp EEC-----
T ss_pred EEECCCCC
Confidence 99998754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=287.74 Aligned_cols=245 Identities=9% Similarity=0.007 Sum_probs=203.9
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC-e
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-L 421 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~ 421 (1101)
+|.+.|++++|+|++++ |++|+.||.|+|||+.+++.... ...+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~~-l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcE
Confidence 59999999999999995 89999999999999988762110 002458999999999999999 9
Q ss_pred EEEEEcCCeEEEEEc-cCCceeeeeeeecc--ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC---------CceE
Q 001318 422 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---------GAKQ 489 (1101)
Q Consensus 422 las~~~d~~i~iwd~-~~~~~~~~~~~l~~--h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---------~~~~ 489 (1101)
|++|+.||.|++||+ .+++.. .+.+ |...|.+++|+| ++ ++++++.|+.|++||+.+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSFQ----ALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEE----ECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCceE----eccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 887642 4778 999999999999 77 799999999999999988 7777
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC-CCcee--eecCCCCceeEEEEccCCceEEeccccCceeE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~--~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~ 566 (1101)
..+. |...|.+++|+ +++ +++++.|+.|++||++. ..... ....+.. .+.+
T Consensus 145 ~~~~-~~~~v~~~~~~--~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------------------~i~~ 198 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTN--SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY---------------------QIRD 198 (342)
T ss_dssp SSSS-SCCCEEEEEEC--SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSS---------------------CEEE
T ss_pred eEEe-eCCceEEEEec--CCc--EEEEeCCCeEEEEECCccccccceeeecCCCC---------------------ceeE
Confidence 7777 88999999985 433 99999999999999987 44321 2222233 4556
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCC------ceeEEEcCCCC-------CCCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001318 567 VQFDT-TKNRFLAAGDDFSIKFWDMDSV------QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKIL 632 (1101)
Q Consensus 567 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw 632 (1101)
++|+| +++++++++.||.|++|+++.. +....+..+.. ...|.+++|+|++++|++++.||.|++|
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 66666 6678999999999999999887 77788876643 3479999999999999999999999999
Q ss_pred EecCc
Q 001318 633 ATSDG 637 (1101)
Q Consensus 633 ~~~~~ 637 (1101)
|+.++
T Consensus 279 d~~~~ 283 (342)
T 1yfq_A 279 NLQTR 283 (342)
T ss_dssp ETTTT
T ss_pred cCccH
Confidence 99877
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=288.45 Aligned_cols=250 Identities=18% Similarity=0.205 Sum_probs=198.1
Q ss_pred cccCCCCcEEEEEecC---CCeEEEEEecCCcEEEEeCCC-cceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 341 TLNQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spd---g~~llatg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
..+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ ++.+.. .+.+|...|++++|+
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~v~~~~~~ 95 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGPVLDVCWS 95 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSCEEEEEEC
T ss_pred ccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCCEEEEEEC
Confidence 3459999999999999 47 599999999999999998 444321 367899999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEE--cCCCCeEEEEEecCCCcEEEEeCCCCceEEEecC
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 494 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~--s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 494 (1101)
|++++|++++.||.|++||+.+++.+. +.+|...|.+++| ++++. +|++++.|+.|++||+++++.+..+..
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEEEEEec
Confidence 999999999999999999999987554 5679999999999 88888 799999999999999999999999986
Q ss_pred cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC--CCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 495 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 495 h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
|. .+.++.+. . ..+++++.++.+++|+++.......... .......+.+.++... .
T Consensus 170 ~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 227 (368)
T 3mmy_A 170 PE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-----------------K 227 (368)
T ss_dssp SS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----------------C
T ss_pred CC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-----------------C
Confidence 65 55555543 3 4788899999999999987554332211 1222233332222210 0
Q ss_pred CCEEEEEeCCCcEEEEECCCC---ceeEEEcCCCCC----------CCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGL----------PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
...+++++.||.|++|++... ..+..+..+... ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 122999999999999999987 556666655321 15899999999999999999999999998876
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=293.99 Aligned_cols=254 Identities=15% Similarity=0.218 Sum_probs=203.1
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeEEE
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV 424 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 424 (1101)
.....++++|+...++++|+.||.|+||++........ ....+.+|.+.|++++|+| ++++|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 45567999999887777889999999999966433210 1124789999999999999 9999999
Q ss_pred EEcCCeEEEEEccCCcee----eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe--cCcccC
Q 001318 425 AYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAP 498 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~ 498 (1101)
|+.||+|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987421 223367899999999999999843 7999999999999999999999999 889999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee-cCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
|.+++|++ ++.+|++++.||.|++||+++++....+ ..+... .+..+.|+|++.+++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~ 236 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT--------------------RPVHAVFVSEGKILT 236 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS--------------------SCCEEEECSTTEEEE
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC--------------------cceEEEEcCCCcEEE
Confidence 99999864 6689999999999999999987666555 344332 244455555556788
Q ss_pred EE---eCCCcEEEEECCCCce-eEEEcCCCCCCCcCeEEEccCCCEEEE-EeCCCcEEEEEecCcc
Q 001318 578 AA---GDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKILATSDGI 638 (1101)
Q Consensus 578 ~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~ 638 (1101)
+| +.|+.|++||+.+++. +.... ..+...+.+++|+|++++|++ ++.||.|++|++.++.
T Consensus 237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 237 TGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred EeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 88 7899999999998765 33333 223346899999999999975 5579999999998773
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=288.06 Aligned_cols=256 Identities=16% Similarity=0.206 Sum_probs=208.2
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCc--ceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
..+|.+.|++++|+|+|++ |++|+.||.|+|||+..+ +.+. .+.+|...|++++|+|+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~ 66 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 66 (379)
T ss_dssp EEECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCG
T ss_pred ecCCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCC
Confidence 3469999999999999995 999999999999999743 3332 37789999999999987
Q ss_pred --CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCeEEEEEecCCCcEEEEeCCCCc--eEEEe
Q 001318 419 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF 492 (1101)
Q Consensus 419 --g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~ 492 (1101)
+++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ....+
T Consensus 67 ~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~ 143 (379)
T 3jrp_A 67 KFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII 143 (379)
T ss_dssp GGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEe
Confidence 999999999999999999998622 33357789999999999999 77 79999999999999999874 44567
Q ss_pred cCcccCeEEEeeeecC-----------CccEEEEEecCCcEEEEecCCCCce----eeecCCCCceeEEEEccCCceEEe
Q 001318 493 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~-----------~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
.+|...|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|++.
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---- 219 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 219 (379)
T ss_dssp ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC----
Confidence 7899999999997632 5689999999999999999876533 23444555555555555410
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
.+++|++++.||.|++||+.++. ....+....+...|.+++|+|++++|++++.||.|++|++
T Consensus 220 --------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 220 --------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred --------------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 04689999999999999998875 2333333345567999999999999999999999999999
Q ss_pred cCc
Q 001318 635 SDG 637 (1101)
Q Consensus 635 ~~~ 637 (1101)
..+
T Consensus 286 ~~~ 288 (379)
T 3jrp_A 286 NLE 288 (379)
T ss_dssp EET
T ss_pred CCC
Confidence 865
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=276.69 Aligned_cols=255 Identities=13% Similarity=0.116 Sum_probs=209.4
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCC----ceeeEecCCCCCeEEEEEecC-CCcEEEEEeccCeEEEEEe
Q 001318 803 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~-d~~~lasg~~dg~v~vwd~ 876 (1101)
+|...|++++|+|++++|++++ ||.|++||+.++ +....+.+|...|++++|+|. ++++|++|+.||.|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 3999999999999999999999 899999999876 466778899999999999984 4899999999999999999
Q ss_pred ecc---------eEeeeecCcccCeeEEEEcCC--CCEEEEEeCCCceEEEeCCCcccccceee----ecC-CCCCCCCC
Q 001318 877 RVD---------EVKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFL----QIP-TGRTPTAQ 940 (1101)
Q Consensus 877 ~~~---------~~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~D~~v~iwd~~~~~~~~~~~~----~~~-~~~~~~~~ 940 (1101)
.++ +.+..+.+|.+.|.+++|+|+ +.+|++++.|+.|++||+.+++....... ... ........
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ 168 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccc
Confidence 886 667888999999999999999 99999999999999999988764332111 000 01111225
Q ss_pred CCeEEEEcCC---CcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCC----CEEEEEEcCCeEEEEEcC
Q 001318 941 SDTRVQFHQD---QIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS----QLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 941 ~v~~~~~s~d---g~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg----~~l~s~s~dg~v~vwd~~ 1012 (1101)
.+.+++|+|+ +.++++ +.++.+.+|+...++........+|...|++++|+|++ ++|++++.||.|++||+.
T Consensus 169 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 169 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp CCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred ceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 7899999997 888888 57788888887777664444445899999999999998 899999999999999998
Q ss_pred Cc----------------------------------------------eeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 1013 NL----------------------------------------------KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 1013 ~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
++ +.+..+. +|... |. +++|+| +
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~-v~--~~~~s~-~ 317 (351)
T 3f3f_A 249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-------DHNGE-VW--SVSWNL-T 317 (351)
T ss_dssp ECC---------------------------------------CCSEEEEEEEEEC-------TTSSC-EE--EEEECS-S
T ss_pred CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-------ccccc-EE--EEEEcC-C
Confidence 75 3333332 33233 55 899999 6
Q ss_pred CCEEEEEecCCcEEEEeccCCC
Q 001318 1047 PNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+++|++++.||.|++|++.+++
T Consensus 318 ~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 318 GTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SCCEEEEETTSCEEEEEECTTS
T ss_pred CCEEEEecCCCcEEEEecCcCc
Confidence 8999999999999999999876
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=286.03 Aligned_cols=287 Identities=14% Similarity=0.110 Sum_probs=226.4
Q ss_pred EEEEEcCCCceEEe-eecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec-CCCE
Q 001318 742 SRLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY 819 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~-dg~~ 819 (1101)
..++++|+...+++ ++.+|.|++|++.... ..........+|...|.+++|+| ++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~---------------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~ 96 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTG---------------------RVDKNVPLVCGHTAPVLDIAWCPHNDNV 96 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCE---------------------ECCTTCCCBCCCSSCEEEEEECTTCTTE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCC---------------------CCCCCCceEecCCCCEEEEEeCCCCCCE
Confidence 35788888776554 6779999999974321 11000011123899999999999 9999
Q ss_pred EEEEe-CCeEEEEECCCC-------ceeeEecCCCCCeEEEEEecCCC-cEEEEEeccCeEEEEEeecceEeeee--cCc
Q 001318 820 VMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKL--KGH 888 (1101)
Q Consensus 820 la~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~-~~lasg~~dg~v~vwd~~~~~~~~~l--~~h 888 (1101)
|++++ ||.|++||+.++ +.+..+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+++.+..+ .+|
T Consensus 97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 175 (402)
T 2aq5_A 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175 (402)
T ss_dssp EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence 99999 899999999987 66788999999999999999 65 79999999999999999999999999 889
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecC-CCCCCCCCCCeEEEEcCCCcEEEEE----eCCeEE
Q 001318 889 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-TGRTPTAQSDTRVQFHQDQIHFLVV----HETQLA 963 (1101)
Q Consensus 889 ~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~la~~----~d~~v~ 963 (1101)
.+.|++++|+|++++|++++.|+.|++||+.+++. .... .+|.. ..+..++|+|++++++++ .|+.|+
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV-----VAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----EEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce-----eeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 99999999999999999999999999999998653 2222 33332 247999999999999997 689999
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEE-EEcCCeEEEEEcCCcee-eeecCCCcccCCCCCCCCccceEEE
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-CFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIA 1041 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s-~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~i~ 1041 (1101)
+||+.+++.........|...+.+++|+||+++|++ ++.||.|++||+.+++. +..+... . | ...+. +++
T Consensus 249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~--~---~-~~~v~--~~~ 320 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF--S---S-KESQR--GMG 320 (402)
T ss_dssp EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE--C---C-SSCCS--EEE
T ss_pred EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc--c---c-CCccc--ceE
Confidence 999998765222222256778999999999999875 55799999999999874 4433311 0 1 22255 899
Q ss_pred EeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1042 AHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1042 ~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
|+| ++.++++ .|+.+++|++.+++
T Consensus 321 ~sp-~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 321 YMP-KRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp ECC-GGGSCGG--GTEEEEEEEEETTE
T ss_pred Eec-cccccee--cceeEEEEEcCCCc
Confidence 999 6677664 57799999998876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-29 Score=281.36 Aligned_cols=252 Identities=12% Similarity=0.070 Sum_probs=207.8
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECC--CCceeeEecCCCCCeEEEEEecCC--CcEEEEEeccCeEEEEEeec
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~lasg~~dg~v~vwd~~~ 878 (1101)
|...|.+++|+|++++|++++ ||.|++||+. +++.+..+.+|...|++++|++ + +++|++|+.||.|++||+.+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEET
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCC
Confidence 999999999999999999998 8999999998 6677888999999999999997 5 89999999999999999999
Q ss_pred ce--EeeeecCcccCeeEEEEcCC--CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC-----
Q 001318 879 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ----- 949 (1101)
Q Consensus 879 ~~--~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----- 949 (1101)
++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+.++....... ..++. ..|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~---~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHA---IGVNSASWAPATIEE 162 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCT---TCEEEEEECCCC---
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCC---CceEEEEEcCccccc
Confidence 87 77888899999999999999 9999999999999999998864332222 22333 4799999999
Q ss_pred --------CCcEEEE-EeCCeEEEEEcCCceee--eeccCCCCCCCeeEEEEcCC---CCEEEEEEcCCeEEEEEcCCce
Q 001318 950 --------DQIHFLV-VHETQLAIFETTKLECV--KQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 950 --------dg~~la~-~~d~~v~vwd~~~~~~~--~~~~~~~h~~~i~~l~~spd---g~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
++.++++ +.|+.|++||+.++... ......+|...|++++|+|+ +++|++++.||.|++||+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6899988 58999999999876432 11123478999999999999 8999999999999999999874
Q ss_pred eeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1016 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
........ ...+| ...+. +++|+| ++++|++++.||.|++|++..+.
T Consensus 243 ~~~~~~~~--~~~~~-~~~v~--~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 243 GPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SCCEEEES--SSSCC-SSCEE--EEEECS-SSCCEEEEESSSSEEEEEEEETT
T ss_pred ccceeeee--ccccC-CCcEE--EEEEcC-CCCEEEEecCCCcEEEEeCCCCC
Confidence 21111100 01111 22255 899999 78999999999999999998543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=277.10 Aligned_cols=320 Identities=15% Similarity=0.190 Sum_probs=238.0
Q ss_pred CeEEEE---EecCCCeEEEE--------------EcCCeEEEEEcc--CCceeeeeeeeccccCCeeEEEEcCCCCeEEE
Q 001318 409 SVNRVI---WSPDGSLFGVA--------------YSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 469 (1101)
Q Consensus 409 ~V~~l~---~spdg~~las~--------------~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l 469 (1101)
.+..++ |+|+++.++.. +.++.+.||.++ ++. ......+..+ ..+.+++|+|++. ++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~ 137 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LA 137 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EE
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EE
Confidence 455666 66666655543 333433555443 342 2222234444 4567999999555 78
Q ss_pred EEecCCCcEEEEeCCCCceEE-----EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCcee
Q 001318 470 ITCGDDKTIKVWDATNGAKQY-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCT 544 (1101)
Q Consensus 470 ~s~~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~ 544 (1101)
++++.|+.|++||+.+++.+. .+.+|.+.|.+++| .+++.++++++.|+.|++||+++.+....+..+...+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 889999999999999999887 44578889999998 45668999999999999999998777776666666666
Q ss_pred EEEEccCCceEEeccccCceeEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE
Q 001318 545 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 545 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
+++|+|++ +.++ +++.|+.|++||+.+++.+..+..+. .+.+++|+|++++++++
T Consensus 216 ~~~~~~~~---------------------~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 216 ILLYDPIR---------------------DLVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTT---------------------TEEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEE
T ss_pred EEEEcCCC---------------------CEEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEE
Confidence 66665555 4564 55589999999999999888876543 48899999999999988
Q ss_pred e--------CCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCcc
Q 001318 624 T--------NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 695 (1101)
Q Consensus 624 ~--------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1101)
+ .||.|++||+.++ +....+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~-~~~~~~--------------------------------------------------- 299 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKE-KLIDTI--------------------------------------------------- 299 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTT-EEEEEE---------------------------------------------------
T ss_pred ECCCCccccCCCeEEEEECCCC-cEEeec---------------------------------------------------
Confidence 7 3566777765543 110000
Q ss_pred ccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCC
Q 001318 696 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 775 (1101)
Q Consensus 696 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 775 (1101)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEE-e-CCeEEEEECCCCceeeEecCCCCCeEEEE
Q 001318 776 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLA 853 (1101)
Q Consensus 776 ~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 853 (1101)
.+...+.+++|+|++++++++ + ++.|++||+.+++.+..+. +...+.+++
T Consensus 300 ---------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~ 351 (433)
T 3bws_A 300 ---------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA 351 (433)
T ss_dssp ---------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred ---------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence 012235667788888755444 4 7889999999888887776 667799999
Q ss_pred EecCCCcEEEEEec---------------cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeC-CCceEEEe
Q 001318 854 FHPQDNNIIAIGMD---------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWS 917 (1101)
Q Consensus 854 ~sp~d~~~lasg~~---------------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd 917 (1101)
|+| ++++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++++. |++|++|+
T Consensus 352 ~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 352 LSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp ECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 999 8888888876 579999999999988888764 57899999999999998875 99999999
Q ss_pred CCC
Q 001318 918 SDG 920 (1101)
Q Consensus 918 ~~~ 920 (1101)
++.
T Consensus 430 ~~~ 432 (433)
T 3bws_A 430 RDG 432 (433)
T ss_dssp ETT
T ss_pred ecC
Confidence 864
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-29 Score=284.91 Aligned_cols=267 Identities=13% Similarity=0.227 Sum_probs=212.5
Q ss_pred eeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 338 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 338 ~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
....+.|.+.|++++|+|++..++|+|+.||.|+|||+.+...... ..........+.+|...|++++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 4567789999999999998655799999999999999976211000 0000001114779999999999999
Q ss_pred CCC-eEEEEEcCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC---ceE
Q 001318 418 DGS-LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQ 489 (1101)
Q Consensus 418 dg~-~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~ 489 (1101)
++. +|++|+.||.|++||+.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999987432 2224457789999999999995444 7999999999999999987 577
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
..+..|...|++++|++... .++++|+.||.|++||++.. .....+..|...|.+++|+|++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~--------------- 334 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE--------------- 334 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT---------------
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC---------------
Confidence 88889999999999975432 47999999999999999984 45666677777777777777664
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCC--------------CceeEEEcCCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEE
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDMDS--------------VQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILA 633 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~ 633 (1101)
.++++++.|+.|++||+.. .+.+..+..| ...|.+++|+|+++ +|++++.||.|++|+
T Consensus 335 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 335 -----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp -----TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred -----CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 4689999999999999987 2445555444 44799999999999 999999999999999
Q ss_pred ecCc
Q 001318 634 TSDG 637 (1101)
Q Consensus 634 ~~~~ 637 (1101)
+...
T Consensus 408 ~~~~ 411 (430)
T 2xyi_A 408 MAEN 411 (430)
T ss_dssp ECHH
T ss_pred cccc
Confidence 8754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=269.54 Aligned_cols=227 Identities=14% Similarity=0.114 Sum_probs=179.6
Q ss_pred CeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE-EEEEcCCeEEEEEc
Q 001318 358 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSY 436 (1101)
Q Consensus 358 ~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~ 436 (1101)
++++++++.|+.|++||+.+++.+.. +..|. .+.+++|+|||++| ++++.|++|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35799999999999999999887653 44443 58999999999987 56668999999999
Q ss_pred cCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEE-EE
Q 001318 437 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FS 515 (1101)
Q Consensus 437 ~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s 515 (1101)
.+++.+. .+..| ..+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..| ..+.+++|+ ++++.+ ++
T Consensus 62 ~~~~~~~---~~~~~-~~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s--~dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAG-SSPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS--PDGKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECS-SSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC--TTSSEEEEE
T ss_pred CCCeEEE---EEECC-CCccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEEC--CCCCEEEEE
Confidence 9988665 34434 38999999999995 4467778899999999999998888754 467888885 455656 78
Q ss_pred EecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCc
Q 001318 516 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQ 594 (1101)
Q Consensus 516 ~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~ 594 (1101)
++.|+.|++||+.+++....+..+. .+ ..++|+|+++.+ ++++.++.|++||+.+++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~~-~~---------------------~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVGR-SP---------------------KGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCS-SE---------------------EEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eCCCCEEEEEECCCCcEEEEEecCC-Cc---------------------ceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 8889999999998866555444322 23 345555555566 567789999999999999
Q ss_pred eeEEEcCCCCCCCcCeEEEccCCCEEEEEe---CCCcEEEEEecCc
Q 001318 595 LLTSIDADGGLPASPRIRFNKDGCLLAVST---NDNGIKILATSDG 637 (1101)
Q Consensus 595 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~ 637 (1101)
.+..+.... .+.+++|+|++++|++++ .++.|++||+.++
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 192 VIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred EEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 888876433 578899999999999888 6899999998766
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=251.19 Aligned_cols=294 Identities=15% Similarity=0.122 Sum_probs=210.1
Q ss_pred CeeEEEEc-CCCCeEEEEEecCCCcEEEEeCCCC---ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC
Q 001318 454 GVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 529 (1101)
Q Consensus 454 ~V~~~~~s-~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~ 529 (1101)
.+.++-|- +..+...+++++. ..|++|+..++ ++++++.+|..+|..+.+.++.-+-..++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------ 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------ 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence 35556663 4556656777775 69999999999 8999999999999999987655432222221
Q ss_pred CCceeeecCCCCceeEEEEccC----CceEEeccccCceeEEEEcCCCCEEEEEe--CCCcEEEEEC-CCCceeEEEcCC
Q 001318 530 LGSRVDYEAPGRWCTTMAYSAD----GTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSIKFWDM-DSVQLLTSIDAD 602 (1101)
Q Consensus 530 ~~~~~~~~~~~~~v~~~~~s~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~ 602 (1101)
..+...|.+++++|+ ++.+..+.+. +.+..+ ++++.+.+++ .|+.|++|++ .+++.+..+..+
T Consensus 108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 108 -------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp -------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred -------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 112345788999999 7766665544 334444 5666555544 6999999999 558888887766
Q ss_pred CCCCCcCeEEEcc---CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccc
Q 001318 603 GGLPASPRIRFNK---DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 679 (1101)
Q Consensus 603 ~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
.. .+..++|++ ++.+|++++.|++|+|||+.++ +.++.+.+|..
T Consensus 178 ~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~------------------------------ 224 (356)
T 2w18_A 178 PP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS------------------------------ 224 (356)
T ss_dssp CC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC-------------------------------
T ss_pred CC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc------------------------------
Confidence 55 678899999 7899999999999999999998 55555543211
Q ss_pred cccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC
Q 001318 680 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 759 (1101)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 759 (1101)
+...+.+++|+|+|..+++++.+
T Consensus 225 ---------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 225 ---------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp -----------------------------------------------------------CCCEEEEEEETTEEEEEEC--
T ss_pred ---------------------------------------------------------ceeeeEEEEECCCCCEEEEeccC
Confidence 22356788999999887776654
Q ss_pred ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce
Q 001318 760 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 838 (1101)
Q Consensus 760 g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 838 (1101)
.. +| .+++|+ |++|++||..+++.
T Consensus 248 ~~--~w-----------------------------------------------------~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 248 CA--KE-----------------------------------------------------SESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp -----------------------------------------------------------------CCEEEEEEETTTTEE
T ss_pred CC--cc-----------------------------------------------------eeeccCCCcEEEEEECCCCEE
Confidence 21 12 356777 89999999999988
Q ss_pred eeEe-----cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCee-EEEEcCCCCEEEEEeCCCc
Q 001318 839 MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQ 912 (1101)
Q Consensus 839 ~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~l~s~s~D~~ 912 (1101)
+..+ .+|...+.+. +. ++.++|+|+.||+|+|||+.+++++.++.+|...+. .++|||||++|++|+.|++
T Consensus 273 l~v~~~~~p~Gh~~~~lsg--~~-sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRFLEG--DV-KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp EEEEEECCCTTCCCCEEEE--EE-ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred EEEEEeeccCCCcceeEcc--cc-CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 7765 3666554433 33 467999999999999999999999999999988766 5899999999999999999
Q ss_pred eEEEeC
Q 001318 913 LCVWSS 918 (1101)
Q Consensus 913 v~iwd~ 918 (1101)
|+|||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999985
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=306.70 Aligned_cols=256 Identities=16% Similarity=0.204 Sum_probs=205.6
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCc--ceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
..+|.+.|++++|+|+|++ +++|+.||.|+|||+.++ +.+. .+.+|.+.|++++|+|+
T Consensus 5 l~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~~ 64 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 64 (753)
T ss_dssp ---CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCT
T ss_pred cccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecCC
Confidence 4469999999999999995 999999999999999843 3322 47899999999999998
Q ss_pred --CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCeEEEEEecCCCcEEEEeCCCCc--eEEEe
Q 001318 419 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF 492 (1101)
Q Consensus 419 --g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~ 492 (1101)
+++|++|+.||+|++||+.+++. .....+.+|...|++++|+|+ +. ++++|+.||.|++||+.++. ....+
T Consensus 65 ~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~ 141 (753)
T 3jro_A 65 KFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII 141 (753)
T ss_dssp TSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEe
Confidence 99999999999999999998762 233367889999999999999 88 79999999999999998873 44567
Q ss_pred cCcccCeEEEeeeecC-----------CccEEEEEecCCcEEEEecCCCCce----eeecCCCCceeEEEEccCCceEEe
Q 001318 493 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~-----------~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
.+|...|.+++|++.. ++.++++|+.||.|++||+++.... ..+..|...|.+++|+|++.
T Consensus 142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~---- 217 (753)
T 3jro_A 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 217 (753)
T ss_dssp ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC----
Confidence 8899999999997631 4679999999999999999876432 33445555555555544410
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
.++++++++.||.|++||+.+++.. .......+...|.+++|+|+|+++++++.||.|++|++
T Consensus 218 --------------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 218 --------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp --------------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred --------------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 0468999999999999999886421 11222334557999999999999999999999999999
Q ss_pred cCc
Q 001318 635 SDG 637 (1101)
Q Consensus 635 ~~~ 637 (1101)
..+
T Consensus 284 ~~~ 286 (753)
T 3jro_A 284 NLE 286 (753)
T ss_dssp CSS
T ss_pred CCC
Confidence 865
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=271.14 Aligned_cols=294 Identities=14% Similarity=0.173 Sum_probs=203.6
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
...|...|++++|||||++||+|+.++ ++|||+.+++.... .+...+..++|.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-----QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-----EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-----eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 578999999999999999999998775 78999987654431 22235888999998884 446788899999999
Q ss_pred CCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 483 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 483 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
+.+++++..+. |...|.+++++ ++ .++.+ .|+.|++||+.+. +....+..
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~--~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~----------------------- 138 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLS--RE--FIVVS-YGDVISVFKFGNPWKRITDDIR----------------------- 138 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEEC--SS--EEEEE-ETTEEEEEESSTTCCBSSCCEE-----------------------
T ss_pred CCCCcEEEEEE-CCCceEEEEEc--CC--EEEEE-EcCEEEEEECCCCceeeEEecc-----------------------
Confidence 99999999887 66789988874 32 33333 3678888888764 22211100
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEE--EeCCCcEEEEEecCccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV--STNDNGIKILATSDGIR 639 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iw~~~~~~~ 639 (1101)
....+++++ .++++ |+.+|.|++||+.++..
T Consensus 139 ---------------------------------------------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~ 171 (355)
T 3vu4_A 139 ---------------------------------------------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGS 171 (355)
T ss_dssp ---------------------------------------------EEEEEEEET--TEEEEEESSCTTCEEEEECCC---
T ss_pred ---------------------------------------------CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCc
Confidence 001123333 34444 45677777777665411
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
. .....
T Consensus 172 ~-~~~~~------------------------------------------------------------------------- 177 (355)
T 3vu4_A 172 A-TTQDQ------------------------------------------------------------------------- 177 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-ccccc-------------------------------------------------------------------------
Confidence 0 00000
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
......+.| .+. .+
T Consensus 178 --------------------~~~~~~~~p------------~~~----------------------------------~~ 191 (355)
T 3vu4_A 178 --------------------GVQQKAILG------------KGV----------------------------------LI 191 (355)
T ss_dssp -----------------------------------------CCE----------------------------------EE
T ss_pred --------------------cccccccCc------------ccE----------------------------------EE
Confidence 000000000 000 01
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCe-EEEEECCCCceeeEec-C-CCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGK-ISLFNMMTFKTMATFM-P-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~-i~vwd~~~~~~~~~~~-~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
. +|...|.+++|+|+|++|++++ |++ |++||+.+++++.++. + |...|.+++|+| ++++|++|+.|++|+|||
T Consensus 192 ~--~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 192 K--AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp C--CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEE
T ss_pred E--ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEE
Confidence 1 2888999999999999999999 898 9999999999999998 5 999999999999 999999999999999999
Q ss_pred eecceEe--eeec---------------------CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcc
Q 001318 876 VRVDEVK--SKLK---------------------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 922 (1101)
Q Consensus 876 ~~~~~~~--~~l~---------------------~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~ 922 (1101)
+..+... ..+. .+......++|++||++|++++.||.+++|++..++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 269 IFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9764211 1111 112234679999999999999999999999987754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-27 Score=267.34 Aligned_cols=329 Identities=8% Similarity=0.088 Sum_probs=242.1
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
.++++++.|+.|++||+.+++.+. .+.+| ..+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+. .+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~-~~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA---TIPVG-SNPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE---EEECS-SSEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE---EeecC-CCcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cc
Confidence 467888899999999999987665 45555 45899999999994 45788899999999999999999888655 89
Q ss_pred EEEeeeecCCccEE-EEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE-E
Q 001318 500 YSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-L 577 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 577 (1101)
.+++|+ +++++| ++++.++.|++||+.+++....+..+ ..+ ..++|+|+++.+ +
T Consensus 77 ~~~~~s--pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~---------------------~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 77 QGVAVS--PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSP---------------------LGLALSPDGKKLYV 132 (391)
T ss_dssp EEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSE---------------------EEEEECTTSSEEEE
T ss_pred cceEEC--CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCc---------------------ceEEECCCCCEEEE
Confidence 999985 455666 45556799999999987655544332 223 445555555556 6
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEecCccccccccccccccccccCC
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 656 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1101)
+++.++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.++ +....+.
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~----------- 197 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK----------- 197 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-----------
T ss_pred EeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-----------
Confidence 77889999999999999988887543 36889999999987 56778899999998665 1111000
Q ss_pred CCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccc
Q 001318 657 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 736 (1101)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 736 (1101)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
+...+.+++|+|+
T Consensus 198 -------------------------------------------------------------------~~~~~~~~~~~~~ 210 (391)
T 1l0q_A 198 -------------------------------------------------------------------VEAAPSGIAVNPE 210 (391)
T ss_dssp -------------------------------------------------------------------CSSEEEEEEECTT
T ss_pred -------------------------------------------------------------------cCCCccceEECCC
Confidence 1223455667777
Q ss_pred CCEEEEEe----CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEE-EEEeccCeEEEEEeecceEeeeecCcccC
Q 001318 817 DSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKR 891 (1101)
Q Consensus 817 g~~la~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~l~~h~~~ 891 (1101)
++++++++ ++.|++||+.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++++..+..|..+
T Consensus 211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 77666654 5789999999888888887654 588999999 77666 67788999999999999998888776554
Q ss_pred ee---EEE------------EcCCC----------CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE
Q 001318 892 IT---GLA------------FSHAL----------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 892 V~---~l~------------~s~dg----------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
.. .+. |+.+. ..+...+.|.++++|++..+... .. ......
T Consensus 289 ~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~------~~--------~~~~~~ 354 (391)
T 1l0q_A 289 YASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS------KK--------QNPTHT 354 (391)
T ss_dssp ECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE------CS--------SSCEEC
T ss_pred CccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc------Cc--------CCCeEE
Confidence 21 122 22221 34666677899999999875421 11 113467
Q ss_pred EcCCCcEEEE
Q 001318 947 FHQDQIHFLV 956 (1101)
Q Consensus 947 ~s~dg~~la~ 956 (1101)
|+++|.+.+.
T Consensus 355 ~~~~g~y~~~ 364 (391)
T 1l0q_A 355 YSETGIYTVR 364 (391)
T ss_dssp CSSCEEEEEE
T ss_pred eCCCceEEEE
Confidence 9999998875
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=277.53 Aligned_cols=258 Identities=15% Similarity=0.068 Sum_probs=200.5
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcc---eeEeeeeeeeecCCC---------------------------
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE---RLVLRNFKVWDLGAC--------------------------- 394 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~--------------------------- 394 (1101)
..++.+++|+|||++ |+++ .++.|++||+.+++ .+.. |.....
T Consensus 4 ~~p~~~v~~s~dg~~-l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSL-VFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKL 76 (450)
T ss_dssp ECCCCEEEECSSSSE-EEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC----------------------------
T ss_pred cccEEEEEecCCCCE-EEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhcccccccccccccc
Confidence 357899999999994 5554 46899999999998 4332 221100
Q ss_pred -------------CcccccccccCCCCCeEEEEEecCCCeE-EEEEcCCeEEEEEcc--CCceeeeeeeeccccCCeeEE
Q 001318 395 -------------SMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDI 458 (1101)
Q Consensus 395 -------------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~V~~~ 458 (1101)
..........+|.+.|++++|+|||++| ++|+.||.|+|||+. +++.+..+. ...|...|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~ 155 (450)
T 2vdu_B 77 KSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAI 155 (450)
T ss_dssp -----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEE
T ss_pred ccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEE
Confidence 0000111234677799999999999996 889999999999999 777665322 13577899999
Q ss_pred EEcCCCCeEEEEEecCCCcEEEEeCCCCceEE----EecCcccCeEEEeeeec-CCccEEEEEecCCcEEEEecCCCCce
Q 001318 459 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGSR 533 (1101)
Q Consensus 459 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~v~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~~~ 533 (1101)
+|+|+++ +|++|+.|+.|++|++.+++... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.++...
T Consensus 156 ~~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 156 SIAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 9999999 79999999999999998887554 77889999999999765 22679999999999999999987766
Q ss_pred ee-ecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC----------
Q 001318 534 VD-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD---------- 602 (1101)
Q Consensus 534 ~~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------- 602 (1101)
.. +..|...|.+++|+ + +++|++++.|+.|++||+.+++.+..+..+
T Consensus 234 ~~~~~~h~~~v~~~~~s-d---------------------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-K---------------------DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQ 291 (450)
T ss_dssp EEECCCCSSCEEEEEEC-S---------------------TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTT
T ss_pred eeeecCCCCceEEEEEC-C---------------------CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhc
Confidence 55 34566656655555 4 458999999999999999999988887632
Q ss_pred -------------CCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEe
Q 001318 603 -------------GGLPASPRIRFNKDGCLLAVST-NDNGIKILAT 634 (1101)
Q Consensus 603 -------------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~ 634 (1101)
.....|.+++|+|++++|++++ .++.|++|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 292 HLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 1223578999999999999999 8999999998
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=279.17 Aligned_cols=267 Identities=10% Similarity=-0.031 Sum_probs=186.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-----
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP----- 417 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp----- 417 (1101)
.|...+....+++++. ++|+|+.|++|+|||+.+++......+. .+.+|.+.|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~--------------~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLG--------------GKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEEC--------------TTTSCSSCEEEEEEEEEECTT
T ss_pred ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeec--------------ccCCCCCceEEEEEccccccc
Confidence 4555555666666776 5999999999999999988765432222 5889999999999998
Q ss_pred ---CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe--
Q 001318 418 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 492 (1101)
Q Consensus 418 ---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 492 (1101)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++.....
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence 89999999999999999998876554 46678899999999999865 7999999999999999987654322
Q ss_pred -----------------------cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEc
Q 001318 493 -----------------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 549 (1101)
Q Consensus 493 -----------------------~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 549 (1101)
.+|...|.++.|. .+++..+++++.|+++++||+........+..+...+..+.+.
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 3577788888875 4677899999999999999999888777777787788888888
Q ss_pred cCCceEEeccccCceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001318 550 ADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 628 (1101)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 628 (1101)
++++.... ....+..+.+.+.+. ++++|+.||.|++||+.+++.+..+..+.. .|.+++|+|||++||+++.+|
T Consensus 307 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 307 PNVQGISL--FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp CSEEEECS--SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-
T ss_pred cccccccc--cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-
Confidence 87643211 112233333333334 556678899999999999988877765544 799999999999999998765
Q ss_pred EEEEEe
Q 001318 629 IKILAT 634 (1101)
Q Consensus 629 i~iw~~ 634 (1101)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 666654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-28 Score=253.25 Aligned_cols=274 Identities=10% Similarity=0.135 Sum_probs=200.9
Q ss_pred eeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeec
Q 001318 704 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVA 783 (1101)
Q Consensus 704 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 783 (1101)
-+....+..|++|+......-.....+ ..|..+|..+.+.||...|++..-.+
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~----------------------- 108 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQWEKLYTW----HFAEVPVLQIVPVPDVYNLVCVALGN----------------------- 108 (356)
T ss_dssp EEEEEESSEEEEEEESSSSBEEEEEEE----ECCSSCEEEECCCTTCCSCEEEEECS-----------------------
T ss_pred EEEEeccceEEEcccCCCccceeeEEE----eccCceeEEEEEcCcccceeeeeecc-----------------------
Confidence 344444589999998874222333333 44778999999999877665443221
Q ss_pred CccccCCCccccccccCCCCCCCCeeEEEEecC----CCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCC
Q 001318 784 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN----DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 859 (1101)
Q Consensus 784 ~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d----g~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 859 (1101)
-+...|.+++++|| ++++++++ ..+++|++. ++
T Consensus 109 -------------------~~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l~-----------------------~g 145 (356)
T 2w18_A 109 -------------------LEIREIRALFCSSDDESEKQVLLKSG-NIKAVLGLT-----------------------KR 145 (356)
T ss_dssp -------------------SSEEEEEEECC------CCEEEEEEE-EEEEEEEET-----------------------TT
T ss_pred -------------------ccccceEEEEECCCccccccEEEeCC-CeEEEEecC-----------------------CC
Confidence 05567899999999 89999877 347777543 45
Q ss_pred cEEEEEe--ccCeEEEEEee-cceEeeeecCcccCeeEEEEcC---CCCEEEEEeCCCceEEEeCCCcccccceeeecCC
Q 001318 860 NIIAIGM--DDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT 933 (1101)
Q Consensus 860 ~~lasg~--~dg~v~vwd~~-~~~~~~~l~~h~~~V~~l~~s~---dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 933 (1101)
+++.+++ .|+.|++|++. +++.+..+.+|...++.++|++ ++.+||+++.|++|+|||+++++. +..+.
T Consensus 146 ~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-----l~tL~ 220 (356)
T 2w18_A 146 RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-----LKKMH 220 (356)
T ss_dssp EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-----EEEEE
T ss_pred cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-----EEEEc
Confidence 5555533 57777788773 4777777889999999999999 789999999999999999999764 23333
Q ss_pred CCCCCCCCCeEEEEcCCCcEEE------------E-EeCCeEEEEEcCCceeeeecc---CCCCCCCeeEEEEcCCCCEE
Q 001318 934 GRTPTAQSDTRVQFHQDQIHFL------------V-VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQLV 997 (1101)
Q Consensus 934 ~~~~~~~~v~~~~~s~dg~~la------------~-~~d~~v~vwd~~~~~~~~~~~---~~~h~~~i~~l~~spdg~~l 997 (1101)
++......+.+++|+|+|++++ + +.|++|++||..+++++..+. +.+|...+.+..++ +.++
T Consensus 221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~l 298 (356)
T 2w18_A 221 IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCA 298 (356)
T ss_dssp CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEE
T ss_pred CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEE
Confidence 3322224678889999999874 3 367899999999999876652 35776666555554 8899
Q ss_pred EEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 998 YACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 998 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
++++.|++|+|||+.+|+++.++. +|....+. .++|+| |+++|++|+.|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEEEECCCcEEEecC
Confidence 999999999999999999999887 44343333 589999 7899999999999999996
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=275.03 Aligned_cols=247 Identities=9% Similarity=0.033 Sum_probs=201.5
Q ss_pred CCCCeeEEEEecCCCEE-EEEe-CCeEEEEECC--CCceeeEec--CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 804 PEEAVPCFALSKNDSYV-MSAS-GGKISLFNMM--TFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~l-a~~s-dg~i~vwd~~--~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
|...|.+++|+|++++| ++++ ||.|++||+. +++.+..+. .|...|++++|+| ++++|++|+.||.|++|++.
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecC
Confidence 66789999999999996 7887 8999999999 888888876 5678899999999 89999999999999999998
Q ss_pred cceEee----eecCcccCeeEEEEcCC---CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 878 VDEVKS----KLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 878 ~~~~~~----~l~~h~~~V~~l~~s~d---g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
+++... .+.+|.+.|++++|+|+ +++|++++.|++|++||+.+++.. .....+|. ..|.+++|+ +
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~~h~---~~v~~~~~s-d 251 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV----DKWLFGHK---HFVSSICCG-K 251 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE----EEECCCCS---SCEEEEEEC-S
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee----eeeecCCC---CceEEEEEC-C
Confidence 877554 78889999999999999 999999999999999999876532 22244554 489999999 9
Q ss_pred CcEEEE-EeCCeEEEEEcCCceeeeeccCC-----------------------CCCCCeeEEEEcCCCCEEEEEE-cCCe
Q 001318 951 QIHFLV-VHETQLAIFETTKLECVKQWVPR-----------------------ESSAPITHATFSCDSQLVYACF-LDAT 1005 (1101)
Q Consensus 951 g~~la~-~~d~~v~vwd~~~~~~~~~~~~~-----------------------~h~~~i~~l~~spdg~~l~s~s-~dg~ 1005 (1101)
+++|++ +.|+.|++||+.+++++..+... .+...|.+++|+|++++|++++ .|+.
T Consensus 252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~ 331 (450)
T 2vdu_B 252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC 331 (450)
T ss_dssp TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence 999999 58999999999999987776421 2245799999999999999999 8999
Q ss_pred EEEEEc--CCc---eeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEec-------CCcEEEEeccCCCcccc
Q 001318 1006 VCVFSA--ANL---KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-------DGGVHVFEPLESEGKWG 1072 (1101)
Q Consensus 1006 v~vwd~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~-------dg~v~vW~~~~~~~~~~ 1072 (1101)
|+||++ .++ +.+..+. ++ ..+. +++|+| + .++++.+. +..|.+|.+....+.|.
T Consensus 332 i~iw~~~~~~~~~l~~~~~~~-------~~--~~v~--~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 332 IIILEMSEKQKGDLALKQIIT-------FP--YNVI--SLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEEEEECSSSTTCEEEEEEEE-------CS--SCEE--EEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred EEEEEeccCCCCceeeccEec-------cC--CceE--EEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 999999 665 5555555 21 1244 899999 4 45555433 55689998876655553
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=275.74 Aligned_cols=348 Identities=13% Similarity=0.108 Sum_probs=210.2
Q ss_pred CCCcEEEEE---ecCCCeEEEEEecCCcEEEEeCCCcce-----eEeeeeeeeecCCCCc-----ccccccccCCCCCeE
Q 001318 345 GSSPMSMDF---HPVQQTLLLVGTNVGDIGLWEVGSRER-----LVLRNFKVWDLGACSM-----PLQAALVKDPGVSVN 411 (1101)
Q Consensus 345 ~~~v~~~~~---spdg~~llatg~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~ 411 (1101)
+....++.| +|++..++++| .|+.|.+|+...... .....+..+....... +........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 345566666 45666555555 578899998643211 1111112222111100 001112345566666
Q ss_pred EEEEecCCCeEEEEEcCCeEEEEEccCCceee--eeeeeccccCCeeEEEEcC--------CCCeEEEEEecCCCcEEEE
Q 001318 412 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 412 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~--~~~~l~~h~~~V~~~~~s~--------d~~~~~l~s~~~d~~i~iw 481 (1101)
...+++++.+||+++.|++|+|||..+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 67777889999999999999999999886543 2345789999999999998 777 89999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
|+.++.++..+.+|...|.+++|+|.. ..+|++++.||+|++||+.++........+.......
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~--------------- 235 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW--------------- 235 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC---------------
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce---------------
Confidence 999999888888899999999997543 2589999999999999998866544332221111000
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEEecCcccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
.++...... .......++...+.++.|+ ++++.|++++.|+++++||+..+ ..
T Consensus 236 --------------~~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~ 289 (393)
T 4gq1_A 236 --------------LLTLNTLPL-----------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-ND 289 (393)
T ss_dssp --------------SEEEESGGG-----------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred --------------EEecccccc-----------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CC
Confidence 011100000 0011112334468889987 79999999999999999998776 32
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
...+..
T Consensus 290 ~~~l~~-------------------------------------------------------------------------- 295 (393)
T 4gq1_A 290 YNEISD-------------------------------------------------------------------------- 295 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEee--------------------------------------------------------------------------
Confidence 222221
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
+...+..+.+.++++.+..
T Consensus 296 ----------------~~~~~~~~~~~~~~~~~~~--------------------------------------------- 314 (393)
T 4gq1_A 296 ----------------STMKLGPKNLLPNVQGISL--------------------------------------------- 314 (393)
T ss_dssp ------------------------CCSCSEEEECS---------------------------------------------
T ss_pred ----------------ecCccccEEEccccccccc---------------------------------------------
Confidence 1122222333333221110
Q ss_pred CCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 801 DSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+...+..+.+.+ ++.++++|+ ||+|++||+.+++....+.+|...|.+++|+| ||++||+++.+| +.+|.+.
T Consensus 315 ---~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 315 ---FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ---SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEEG
T ss_pred ---cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEEe
Confidence 111122222223 344566677 89999999999999988888999999999999 999999998766 6666553
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=269.06 Aligned_cols=237 Identities=12% Similarity=0.135 Sum_probs=194.6
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEE-EEEeccCeEEEEEeecceE
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEV 881 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~ 881 (1101)
|...+.+++|+++++++++++ |+.|++||+.+++.+..+..|...+.+++|+| +++++ ++++.|+.|++||+.+++.
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEE
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcE
Confidence 566778888888888888887 79999999999999999988999999999999 77666 5555899999999999998
Q ss_pred eeeecCcccCeeEEEEcCCCCEEEEEe--------CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 882 KSKLKGHSKRITGLAFSHALNVLVSSG--------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~dg~~l~s~s--------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
+..+..+. .+.+++|+|+|++|++++ .|+.|++||+.+++..... . +. ..+..++|+|+++.
T Consensus 247 ~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~----~~---~~~~~~~~~~~g~~ 316 (433)
T 3bws_A 247 IRKTDKIG-LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--G----PP---GNKRHIVSGNTENK 316 (433)
T ss_dssp EEECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--E----EE---ECEEEEEECSSTTE
T ss_pred EEEecCCC-CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--c----CC---CCcceEEECCCCCE
Confidence 88887654 599999999999999988 5889999999986542221 1 11 25688999999986
Q ss_pred EEE--EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEc---------------CCeEEEEEcCCcee
Q 001318 954 FLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL---------------DATVCVFSAANLKL 1016 (1101)
Q Consensus 954 la~--~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~---------------dg~v~vwd~~~~~~ 1016 (1101)
+++ +.++.|++||+.+++.+..+. +...+.+++|+|||++|++++. ||.|++||+.+++.
T Consensus 317 l~~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 317 IYVSDMCCSKIEVYDLKEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEEEecCCCEEEEEECCCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 655 378999999999998887764 4678999999999999988876 57999999999999
Q ss_pred eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEec-CCcEEEEeccC
Q 001318 1017 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLE 1066 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~-dg~v~vW~~~~ 1066 (1101)
+..+.. + ..+..++|+| |+++|++++. |+.|++|++..
T Consensus 394 ~~~~~~------~-----~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 394 KEFWEA------G-----NQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEC------S-----SSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred EEEecC------C-----CCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 887761 1 1234899999 6788887764 99999999863
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-27 Score=260.86 Aligned_cols=295 Identities=10% Similarity=0.123 Sum_probs=206.1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEecCccccc
Q 001318 563 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
.+.+++|+|+|++|++|+.+ .+++|++.+++........ .+..+++.++++.+ ++++.|++|++||..++ +.+
T Consensus 21 ~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~-~~~ 94 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK-QDV 94 (355)
T ss_dssp CCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS----CCCEEEECTTSSEEEEECSSTTEEEEEETTTT-EEE
T ss_pred ceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC----CeEEEEEcCCCCEEEEEECCccEEEEEECCCC-cEE
Confidence 44445555555678877766 4789999988776655422 37779999988887 46777899999998877 322
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..+.
T Consensus 95 ~~~~---------------------------------------------------------------------------- 98 (355)
T 3vu4_A 95 SRIK---------------------------------------------------------------------------- 98 (355)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred EEEE----------------------------------------------------------------------------
Confidence 2111
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
+...|.++.|+++. +++ +.++.+++|++.... ..+.. +
T Consensus 99 ---------------~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~---------------------~~~~~-~-- 136 (355)
T 3vu4_A 99 ---------------VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPW---------------------KRITD-D-- 136 (355)
T ss_dssp ---------------CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTC---------------------CBSSC-C--
T ss_pred ---------------CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCc---------------------eeeEE-e--
Confidence 33467888888765 333 347789999874320 11110 0
Q ss_pred CCCCCCeeEEEEecCCCEEEEE--e-CCeEEEEECCCCc----------------eeeEecCCCCCeEEEEEecCCCcEE
Q 001318 802 SNPEEAVPCFALSKNDSYVMSA--S-GGKISLFNMMTFK----------------TMATFMPPPPAATFLAFHPQDNNII 862 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~--s-dg~i~vwd~~~~~----------------~~~~~~~~~~~i~~l~~sp~d~~~l 862 (1101)
......+++++ .+++++ + +|.|++||+.++. ++..+.+|...|++++|+| ++++|
T Consensus 137 ---~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l 210 (355)
T 3vu4_A 137 ---IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMV 210 (355)
T ss_dssp ---EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEE
T ss_pred ---ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEE
Confidence 11344566777 677764 4 7999999999865 2788999999999999999 99999
Q ss_pred EEEeccCe-EEEEEeecceEeeeec-C-cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 863 AIGMDDSS-IQIYNVRVDEVKSKLK-G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 863 asg~~dg~-v~vwd~~~~~~~~~l~-~-h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
|+|+.||+ |+|||+.+++++..+. + |.+.|++++|+|||++|++++.|++|++||+..+.......+. +
T Consensus 211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~---~----- 282 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALK---G----- 282 (355)
T ss_dssp EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETT---T-----
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccc---c-----
Confidence 99999998 9999999999999998 5 9999999999999999999999999999999875322211110 0
Q ss_pred CCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 001318 940 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
+ +.|. ++ .. .|... ...+. ..+......++|++||++|++++.||.+++|++..++
T Consensus 283 --~----~~~~--~~--~~-----~~~~~----~~~~~-~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 283 --W----INMK--YF--QS-----EWSLC----NFKLS-VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp --T----EECC--CC--CC-----SSCSE----EEECC-CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred --e----eecc--cc--cc-----cccee----EEEec-cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0 0000 00 00 01110 00111 1223345779999999999999999999999987654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=267.95 Aligned_cols=198 Identities=12% Similarity=0.072 Sum_probs=158.3
Q ss_pred CCCCeeEEEEec--CCCEEEEEe-CCeEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 804 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 804 ~~~~i~~~~~s~--dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
|...|.+++|+| +++++++++ ||+|++||+.+++....... +...+++++|+| ++.+||+|+.||.|+|||+.++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence 667899999999 999999999 99999999999998777644 455799999999 9999999999999999999999
Q ss_pred eEe-eeecC-cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCC--eEEEEcCCCcEEE
Q 001318 880 EVK-SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD--TRVQFHQDQIHFL 955 (1101)
Q Consensus 880 ~~~-~~l~~-h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~dg~~la 955 (1101)
+.+ ..+.+ |.++|++++|+|+|.+|++++ |++|++||+.+++... .+.....+.. .+ .+++|+|+|++|+
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYPTYTIPEF---KTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eecccccccc---cccceEEEECCCCCEEE
Confidence 877 78888 999999999999999999999 4599999999865321 1111111111 22 4699999999999
Q ss_pred E-Ee-CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC---CCCEEEEEEcCCeEEEEEcCCc
Q 001318 956 V-VH-ETQLAIFETTKLECVKQWVPRESSAPITHATFSC---DSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 956 ~-~~-d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp---dg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
+ +. |+.+++|++.+....... .++..++|++ +++.|++++.||.++++-....
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 9 44 999999999765432221 4677889998 9999999999999998865443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=295.06 Aligned_cols=251 Identities=12% Similarity=0.073 Sum_probs=209.5
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEECC--CCceeeEecCCCCCeEEEEEecCC--CcEEEEEeccCeEEEEEee
Q 001318 803 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~lasg~~dg~v~vwd~~ 877 (1101)
+|.+.|++++|+|+++++++|+ ||.|++||+. +++....+.+|...|++++|++ + +++|++|+.||.|++||+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence 3999999999999999999998 9999999998 5677888999999999999998 6 8999999999999999999
Q ss_pred cce--EeeeecCcccCeeEEEEcCC--CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC----
Q 001318 878 VDE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ---- 949 (1101)
Q Consensus 878 ~~~--~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---- 949 (1101)
+++ .+..+.+|...|++++|+|+ +.+|++++.||+|++||+.++....... ..+|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCS---SCEEEEEECCCC--
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCC---CceEEEEecCcccc
Confidence 986 77888999999999999999 9999999999999999998864332222 22333 4799999999
Q ss_pred ---------CCcEEEE-EeCCeEEEEEcCCc----eeeeeccCCCCCCCeeEEEEcCC---CCEEEEEEcCCeEEEEEcC
Q 001318 950 ---------DQIHFLV-VHETQLAIFETTKL----ECVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 950 ---------dg~~la~-~~d~~v~vwd~~~~----~~~~~~~~~~h~~~i~~l~~spd---g~~l~s~s~dg~v~vwd~~ 1012 (1101)
++.++++ +.|+.|++||+.++ .....+ .+|...|++++|+|+ +++|++++.||.|++||+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee--cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5888888 58999999999877 344444 378999999999999 8999999999999999999
Q ss_pred CceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1013 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+++........ ...+| ...+. +++|+| +++++++++.||.|++|++..+.
T Consensus 238 ~~~~~~~~~~~--~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 238 NEQGPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCBCCBS--SSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCcceeEEe--ccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 87532221111 11122 22355 899999 78999999999999999998654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=261.84 Aligned_cols=280 Identities=8% Similarity=0.061 Sum_probs=214.5
Q ss_pred EEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC
Q 001318 459 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 538 (1101)
Q Consensus 459 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 538 (1101)
.+.+++. ++++|+.|++|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+...
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 3445666 79999999999999999999988886 566777777543 99999999999997642
Q ss_pred CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc--C
Q 001318 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--D 616 (1101)
Q Consensus 539 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~ 616 (1101)
.+.+|++.+++.+..+.. .+...|.+++|+| +
T Consensus 105 ---------------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 138 (343)
T 3lrv_A 105 ---------------------------------------------QITILDSKTNKVLREIEV-DSANEIIYMYGHNEVN 138 (343)
T ss_dssp ---------------------------------------------EEEEEETTTCCEEEEEEC-CCSSCEEEEECCC---
T ss_pred ---------------------------------------------ceEEeecCCcceeEEeec-CCCCCEEEEEcCCCCC
Confidence 467899988887776652 2334699999999 9
Q ss_pred CCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccc
Q 001318 617 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR 696 (1101)
Q Consensus 617 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1101)
++++++++.||+|++||+.++ +......
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~-~~~~~~~--------------------------------------------------- 166 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDD-SQYIVHS--------------------------------------------------- 166 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSS-CEEEEEC---------------------------------------------------
T ss_pred CCEEEEEeCCCcEEEEECCCC-cEEEEEe---------------------------------------------------
Confidence 999999999999999999877 2221110
Q ss_pred cccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCC
Q 001318 697 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 776 (1101)
Q Consensus 697 ~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 776 (1101)
..+...|.+++|+|++.++++++.||.|++||+..
T Consensus 167 --------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~------- 201 (343)
T 3lrv_A 167 --------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS------- 201 (343)
T ss_dssp --------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-------
T ss_pred --------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-------
Confidence 01344688999999999999999999999998743
Q ss_pred ceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecC---CCCCeE--E
Q 001318 777 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAAT--F 851 (1101)
Q Consensus 777 ~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~---~~~~i~--~ 851 (1101)
+......+. .+|...|.+++|+|++.+|++++++.|++||+.+++.+..+.. |...+. +
T Consensus 202 ---------------~~~~~~~~~-~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 202 ---------------PDQASSRFP-VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp ---------------TTSCCEECC-CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred ---------------CCCCccEEe-ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceE
Confidence 222201111 1388999999999999999999977999999999887666554 333443 6
Q ss_pred EEEecCCCcEEEEEec-cCeEEEEEeecceEeeeecCcccCeeEEEEcC---CCCEEEEEeCCCceEEEeCCC
Q 001318 852 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 852 l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~---dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
++|+| ++++|++++. |+.|+||++.+....... .++..++|++ +++.|++++.|+.+.++-...
T Consensus 266 ~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 266 YDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 99999 9999999998 999999999765422222 5678889998 889999999999999885443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=266.86 Aligned_cols=212 Identities=19% Similarity=0.280 Sum_probs=173.5
Q ss_pred cccCCCCCeEEEEEecC-CCeEEEEEcCCeEEEEEccCC-------ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEec
Q 001318 402 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG-------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 473 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~ 473 (1101)
....|.+.|++++|+|+ +.+||+++.||.|++||+.+. ........+.+|...|++++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 46789999999999997 789999999999999999862 112333467899999999999999886 699999
Q ss_pred CCCcEEEEeCCCCce-------EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC---CceeeecCCCCce
Q 001318 474 DDKTIKVWDATNGAK-------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWC 543 (1101)
Q Consensus 474 ~d~~i~iwd~~~~~~-------~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~v 543 (1101)
.||.|++||+.++.. ...+.+|...|.+++|++. ++.+|++++.||.|++||+++. .....+..|...+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987432 4567789999999999763 3479999999999999999976 3445555666666
Q ss_pred eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCCcCeEEEccCCC-EEE
Q 001318 544 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGC-LLA 621 (1101)
Q Consensus 544 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 621 (1101)
.+++|+|++. ..+++|+.||.|++||+++ +..+..+..+. ..|.+++|+|+++ +|+
T Consensus 281 ~~i~~~p~~~--------------------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~--~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 281 NCLSFNPYSE--------------------FILATGSADKTVALWDLRNLKLKLHSFESHK--DEIFQVQWSPHNETILA 338 (430)
T ss_dssp EEEEECSSCT--------------------TEEEEEETTSEEEEEETTCTTSCSEEEECCS--SCEEEEEECSSCTTEEE
T ss_pred EEEEeCCCCC--------------------CEEEEEeCCCeEEEEeCCCCCCCeEEeecCC--CCEEEEEECCCCCCEEE
Confidence 6666665554 3688999999999999998 56778887654 4799999999885 799
Q ss_pred EEeCCCcEEEEEecCc
Q 001318 622 VSTNDNGIKILATSDG 637 (1101)
Q Consensus 622 ~~~~dg~i~iw~~~~~ 637 (1101)
+++.||.|++||+...
T Consensus 339 s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEETTSCCEEEEGGGT
T ss_pred EEeCCCcEEEEeCCCC
Confidence 9999999999998764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-26 Score=267.08 Aligned_cols=332 Identities=12% Similarity=0.105 Sum_probs=244.8
Q ss_pred EcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEec--CCCCceeeec
Q 001318 460 FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY--DNLGSRVDYE 537 (1101)
Q Consensus 460 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~--~~~~~~~~~~ 537 (1101)
|+|++. ++++++.|++|.+||..+++++.++..+.. +..++| +++|++|++++.|++|++||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~--spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEE--CCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 788886 789999999999999999999999984333 778877 567789999999999999999 5554444433
Q ss_pred CCCCceeEEEEccCCceEEeccccCceeEEEEcC----CCCEEEEEe-CCCcEEEEECCCCceeEEEcCCC---------
Q 001318 538 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT----TKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADG--------- 603 (1101)
Q Consensus 538 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~--------- 603 (1101)
. ... ...++|+| +|+++++++ .+++|.+||..+++++..+...+
T Consensus 220 ~-g~~---------------------p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~ 277 (543)
T 1nir_A 220 I-GIE---------------------ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH 277 (543)
T ss_dssp C-CSE---------------------EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred c-CCC---------------------cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence 2 222 34455566 666788877 58999999999999998887532
Q ss_pred CCCCcCeEEEccCCCE-EEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 604 GLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 604 ~~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
....+.++.++|++.. +++...++.|.+||..+... +.
T Consensus 278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-l~---------------------------------------- 316 (543)
T 1nir_A 278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LT---------------------------------------- 316 (543)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-CE----------------------------------------
T ss_pred cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-ce----------------------------------------
Confidence 1124677888886654 44556678888888755410 00
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceE
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 762 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 762 (1101)
+..+
T Consensus 317 ----------------------------------------------------------~~~i------------------ 320 (543)
T 1nir_A 317 ----------------------------------------------------------VTSI------------------ 320 (543)
T ss_dssp ----------------------------------------------------------EEEE------------------
T ss_pred ----------------------------------------------------------eEEe------------------
Confidence 0000
Q ss_pred EeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceee
Q 001318 763 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA 840 (1101)
Q Consensus 763 ~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~ 840 (1101)
.+...+..++|+|+|+++++++ +++|.+||..+++++.
T Consensus 321 ----------------------------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 321 ----------------------------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp ----------------------------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred ----------------------------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence 0122345678899999877665 6899999999999888
Q ss_pred EecC----CCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeec-------ceEeeeecCcccCeeEEEEcCCCCEEEEEe
Q 001318 841 TFMP----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSG 908 (1101)
Q Consensus 841 ~~~~----~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s 908 (1101)
.+.. |.+....+ ++|+++.+++++. .|++|.|||+.+ +++++++.+|.+.+..|+|+|||++|++++
T Consensus 361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 8764 54433333 5774577788775 689999999998 899999999999899999999999999987
Q ss_pred -------CCCceEEEeCCCcccccceeeecC--CCCCCCCCCCeEEEEcCCCcEEEEE------eCCeEEEEEcCCceee
Q 001318 909 -------ADSQLCVWSSDGWEKQKNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECV 973 (1101)
Q Consensus 909 -------~D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~~------~d~~v~vwd~~~~~~~ 973 (1101)
.+++|.|||+.+++... ..+.+- .+-......+..+.|+|+|+.++++ .++.|.|||..+++++
T Consensus 440 ~~~~~~~~~~~v~v~d~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLKNLDAKY-QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp TTCSSHHHHTCEEEEETTCTTSCC-EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCCCCcccCceEEEEECCCCCCCe-EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 27799999999977531 111110 0001111478899999999999874 2689999999999999
Q ss_pred eecc
Q 001318 974 KQWV 977 (1101)
Q Consensus 974 ~~~~ 977 (1101)
..+.
T Consensus 519 ~~i~ 522 (543)
T 1nir_A 519 AVVK 522 (543)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 8876
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=264.74 Aligned_cols=333 Identities=14% Similarity=0.131 Sum_probs=242.9
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC--CCCceEE
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAKQY 490 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~--~~~~~~~ 490 (1101)
+|+|++.++++++.|++|.+||..+++.+. ++. +|. +..++|+|||+ +|++++.|++|++||+ .+++++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~---~i~~g~~--~~~v~~spdg~--~l~v~~~d~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK---VIDTGYA--VHISRMSASGR--YLLVIGRDARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEE---EEECSTT--EEEEEECTTSC--EEEEEETTSEEEEEETTSSSCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEE---EEecCcc--cceEEECCCCC--EEEEECCCCeEEEEECcCCCCcEEE
Confidence 388999999999999999999999998776 344 443 88999999999 7888889999999999 8999998
Q ss_pred EecCcccCeEEEeeee--cCCccEEEEEec-CCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 491 IFEGHEAPVYSVCPHH--KENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 491 ~~~~h~~~v~~v~~~~--~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
++.. ...+..++|++ ..+|+++++++. +++|.+||..+.+....+..+...+....|. ....+..+
T Consensus 217 ~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~----------~~~~v~~i 285 (543)
T 1nir_A 217 EIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH----------PEPRVAAI 285 (543)
T ss_dssp EEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE----------SCCCEEEE
T ss_pred EEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc----------cCCceEEE
Confidence 8884 45578888853 006788888874 8999999999887776655422100000011 11134445
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCceeE--EEcCCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCccccccc
Q 001318 568 QFDTTKN-RFLAAGDDFSIKFWDMDSVQLLT--SIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRT 643 (1101)
Q Consensus 568 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~ 643 (1101)
.++|++. ++++...++.|.+||+.+.+.+. .+.. ...+.+++|+|+|+++++++ .+++|.+||..++ ++...
T Consensus 286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~ 361 (543)
T 1nir_A 286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSAL 361 (543)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEE
T ss_pred EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEe
Confidence 5555444 45566789999999998876544 4432 23578899999999877655 5889999998877 33322
Q ss_pred cccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCC
Q 001318 644 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 723 (1101)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~ 723 (1101)
+....
T Consensus 362 i~~g~--------------------------------------------------------------------------- 366 (543)
T 1nir_A 362 VDVGK--------------------------------------------------------------------------- 366 (543)
T ss_dssp EECSS---------------------------------------------------------------------------
T ss_pred eccCC---------------------------------------------------------------------------
Confidence 21000
Q ss_pred CccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCC
Q 001318 724 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 803 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~ 803 (1101)
..
T Consensus 367 ------------------------------------------------------------------------------~p 368 (543)
T 1nir_A 367 ------------------------------------------------------------------------------TP 368 (543)
T ss_dssp ------------------------------------------------------------------------------SB
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred CCCCeeEEEEecC-CCEEEEEe--CCeEEEEECCC-------CceeeEecCCCCCeEEEEEecCCCcEEEEEe-------
Q 001318 804 PEEAVPCFALSKN-DSYVMSAS--GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGM------- 866 (1101)
Q Consensus 804 ~~~~i~~~~~s~d-g~~la~~s--dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~------- 866 (1101)
|......+ ++|+ +..++++. |++|.+||+.+ +++++++.+|...+..++|+| ++++|++++
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~ 446 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDAR 446 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcc
Confidence 21111112 3454 44555553 57888888887 889999999988899999999 999999987
Q ss_pred ccCeEEEEEeecceEe-eee--------cCcccCeeEEEEcCCCCEEEEEe-----CCCceEEEeCCCccc
Q 001318 867 DDSSIQIYNVRVDEVK-SKL--------KGHSKRITGLAFSHALNVLVSSG-----ADSQLCVWSSDGWEK 923 (1101)
Q Consensus 867 ~dg~v~vwd~~~~~~~-~~l--------~~h~~~V~~l~~s~dg~~l~s~s-----~D~~v~iwd~~~~~~ 923 (1101)
.+++|.|||+.+++.. ..+ ..+...+..+.|+|||+.|+++. .|+.|.|||.++++.
T Consensus 447 ~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 447 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred cCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 3789999999988766 443 45678899999999999998763 479999999999764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-24 Score=241.91 Aligned_cols=302 Identities=10% Similarity=0.066 Sum_probs=219.6
Q ss_pred cCCeeEEEEcCCCCeEEEEEec----CCC----cEEEEeC--CCCceE--EEecCcccCeEEEeeeec------------
Q 001318 452 VGGVNDIAFSHPNKQLCVITCG----DDK----TIKVWDA--TNGAKQ--YIFEGHEAPVYSVCPHHK------------ 507 (1101)
Q Consensus 452 ~~~V~~~~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~v~~~~~------------ 507 (1101)
...+...+|.+.|.. ++++|+ .|| .|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 457888999999887 676776 567 8999999 999987 458889888887776431
Q ss_pred CCccEEEEEecC------CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 508 ENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 508 ~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
..+..++.++.+ +.|++||++. .....+..+...+. .++|+|+|+.|++++.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~---------------------~~~~Spdg~~la~~s~ 198 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLM---------------------SPAWSPDGSKLAYVTF 198 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEE---------------------EEEECTTSSEEEEEEC
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcce---------------------eeEEcCCCCEEEEEEe
Confidence 013456666554 7999999974 33444444444444 4555555567888887
Q ss_pred CC---cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEE-EEeCCCc--EEEEEecCccccccccccccccccccC
Q 001318 582 DF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNG--IKILATSDGIRLLRTFENLAYDASRTS 655 (1101)
Q Consensus 582 dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~ 655 (1101)
++ .|++||+.+++... +..+. ..+.+++|+|||++|+ +++.++. |++||+.++ +. ..+
T Consensus 199 ~~~~~~i~~~d~~tg~~~~-l~~~~--~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-~~-~~l----------- 262 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVRQ-VASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QI-RQV----------- 262 (415)
T ss_dssp TTSSCEEEEEETTTCCEEE-EECCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CE-EEC-----------
T ss_pred cCCCcEEEEEECCCCcEEE-eecCC--CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-CE-EeC-----------
Confidence 75 99999999988764 33332 3588999999999888 5665555 888888765 21 111
Q ss_pred CCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcc
Q 001318 656 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 735 (1101)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 735 (1101)
.
T Consensus 263 -------------------------------------------------------------------------------~ 263 (415)
T 2hqs_A 263 -------------------------------------------------------------------------------T 263 (415)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred ccccceEEEEEcCCCceEEeeec-Cc--eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEE
Q 001318 736 LRATKISRLIFTNSGNAILALAS-NA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 812 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~ 812 (1101)
.+...+.+++|+|||+.|++++. ++ .|++|++ .++.... +.. +...+.+++
T Consensus 264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~----------------------~~~~~~~--l~~--~~~~~~~~~ 317 (415)
T 2hqs_A 264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI----------------------NGGAPQR--ITW--EGSQNQDAD 317 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----------------------TSSCCEE--CCC--SSSEEEEEE
T ss_pred CCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC----------------------CCCCEEE--Eec--CCCcccCeE
Confidence 14456788999999998888876 45 4554454 3333222 111 456788999
Q ss_pred EecCCCEEEEEe-C---CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC---eEEEEEeecceEeeee
Q 001318 813 LSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKL 885 (1101)
Q Consensus 813 ~s~dg~~la~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~v~vwd~~~~~~~~~l 885 (1101)
|+|||++|++++ + ..|++||+.+++. ..+..+. .+.+++|+| ++++|++++.++ .|++||+. ++....+
T Consensus 318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l 393 (415)
T 2hqs_A 318 VSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKARL 393 (415)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEEC
T ss_pred ECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEEe
Confidence 999999999887 4 4799999998876 4555554 899999999 899998888777 89999986 5567888
Q ss_pred cCcccCeeEEEEcCCC
Q 001318 886 KGHSKRITGLAFSHAL 901 (1101)
Q Consensus 886 ~~h~~~V~~l~~s~dg 901 (1101)
.+|.+.|.+++|+|.-
T Consensus 394 ~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 394 PATDGQVKFPAWSPYL 409 (415)
T ss_dssp CCSSSEEEEEEECCCC
T ss_pred eCCCCCCcCCcccccc
Confidence 9999999999999864
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-23 Score=255.49 Aligned_cols=258 Identities=14% Similarity=0.095 Sum_probs=175.0
Q ss_pred CCCcEEEEEecCCCeEEEEEec-CC-----cEEEEeCCCcceeEeeeeeeee-----cCCCCcccccccccCCCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTN-VG-----DIGLWEVGSRERLVLRNFKVWD-----LGACSMPLQAALVKDPGVSVNRV 413 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~l 413 (1101)
...|.+++|||||++ |++++. |+ .|.+||+.+++........... +...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999997 777776 88 8999999998765421110000 00000000000000001348899
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCC---ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 490 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~---~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 490 (1101)
+|||||++|++++. +.|.+||+.++ +.. .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++...
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~----~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR----QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC----BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE----EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 99999999999987 99999999988 433 3667888999999999999 567666 4689999999988766
Q ss_pred EecCcccC----------------eEEEeeeecCCccEEEEEecCC---------------------------------c
Q 001318 491 IFEGHEAP----------------VYSVCPHHKENIQFIFSTALDG---------------------------------K 521 (1101)
Q Consensus 491 ~~~~h~~~----------------v~~v~~~~~~~~~~l~s~~~dg---------------------------------~ 521 (1101)
....+... +.+++| ++||++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 55444432 355677 56778888887765 6
Q ss_pred EEEEecCC-CCceeeec--CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-----CCCcEEEEECCCC
Q 001318 522 IKAWLYDN-LGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-----DDFSIKFWDMDSV 593 (1101)
Q Consensus 522 i~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~ 593 (1101)
|.+||+.+ ++...... .+... +..++| |||++|++++ .+..|++||+.++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~---------------------~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIY---------------------LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEE---------------------EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred EEEEECCCCCceEEecCCCCcceE---------------------EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence 77788776 54332221 12233 444555 5556677654 3578999999999
Q ss_pred ceeEEEcCCCCC--CCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 594 QLLTSIDADGGL--PASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 594 ~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
+....+..+... ..+.+++|+|||+++++++.+|.++||.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 877766543311 135689999999988888888888888764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=239.54 Aligned_cols=242 Identities=10% Similarity=0.024 Sum_probs=178.2
Q ss_pred CCCcEEEEEecCCCeEEEEEe----cCC----cEEEEeC--CCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGT----NVG----DIGLWEV--GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 414 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 414 (1101)
...+...+|++.|..++++|+ .|| .|+|||+ .+++.+... .+.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence 357888899999988888887 467 8999999 888876432 2556777788887
Q ss_pred Eec--------------CCCeEEEEEcC------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC
Q 001318 415 WSP--------------DGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474 (1101)
Q Consensus 415 ~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~ 474 (1101)
+++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 775 26777777664 799999998644 33 4678999999999999999 6888887
Q ss_pred CC---cEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEE-EEecCCc--EEEEecCCCCceeeecCCCCceeEEEE
Q 001318 475 DK---TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAY 548 (1101)
Q Consensus 475 d~---~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~ 548 (1101)
|+ .|++||+.+++.. .+..|...+.+++|+ ++|+.|+ +++.|+. |++||+.+++. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~s--pdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFS--PDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEc--CCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 9999999999875 466788889999985 5567666 6666655 99999987543 444444445555555
Q ss_pred ccCCceEEeccccCceeEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC
Q 001318 549 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 625 (1101)
Q Consensus 549 s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 625 (1101)
+||| ++|++++. ++ .|++||+.+++.. .+..+. ..+.+++|+|+|++|++++.
T Consensus 275 spdg---------------------~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 275 FPDS---------------------QNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp CTTS---------------------SEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEECTTSSEEEEEEE
T ss_pred CCCC---------------------CEEEEEECCCCCcEEEEEECCCCCEE-EEecCC--CcccCeEECCCCCEEEEEEC
Confidence 5554 56777665 44 6888899887643 333232 35778999999999998876
Q ss_pred C---CcEEEEEecCc
Q 001318 626 D---NGIKILATSDG 637 (1101)
Q Consensus 626 d---g~i~iw~~~~~ 637 (1101)
+ ..|++||+.++
T Consensus 331 ~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 331 NGGQQHIAKQDLATG 345 (415)
T ss_dssp CSSCEEEEEEETTTC
T ss_pred cCCceEEEEEECCCC
Confidence 4 46777776554
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=261.16 Aligned_cols=235 Identities=9% Similarity=0.065 Sum_probs=166.6
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCC---CeEEEEEecCCCeE
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF 422 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l 422 (1101)
..+.+++|||||++ +++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++|
T Consensus 17 ~~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l 75 (723)
T 1xfd_A 17 IHDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYA 75 (723)
T ss_dssp CCCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEE
T ss_pred ccccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEE
Confidence 34678999999995 666 789999999999987654 2445554 49999999999999
Q ss_pred EEEEcC---------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec
Q 001318 423 GVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 493 (1101)
Q Consensus 423 as~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 493 (1101)
|+++.+ +.|.+||+.+++. ..+....+|...+..++|||||+ .|+.++. +.|++||+.+++......
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence 999875 7889999999875 33323445666799999999999 5666665 799999999998877666
Q ss_pred CcccCe------------------EEEeeeecCCccEEEEEecC-CcEEEEecCCCCceeeecCCCCceeEEEEccCCce
Q 001318 494 GHEAPV------------------YSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 554 (1101)
Q Consensus 494 ~h~~~v------------------~~v~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 554 (1101)
.+...+ .+++| ++||++|++++.| +.+.+|++...... ....+..+.+.++|.
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~- 223 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGS-----IYPTVKPYHYPKAGS- 223 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSS-----SSCCCEEEECCBTTS-
T ss_pred CCCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCc-----CCCcceeccCCCCCC-
Confidence 544433 66777 5667888887754 56777876532211 112244445444442
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC----CCCCcCeEEEccCCCEEEEEeCC----
Q 001318 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND---- 626 (1101)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d---- 626 (1101)
. ..+..|++||+.+++....+..+. +...+.+++|+|||++|++....
T Consensus 224 --------------------~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 279 (723)
T 1xfd_A 224 --------------------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (723)
T ss_dssp --------------------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred --------------------C----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence 1 234589999999988656665331 12357789999999988776532
Q ss_pred CcEEEEEecCc
Q 001318 627 NGIKILATSDG 637 (1101)
Q Consensus 627 g~i~iw~~~~~ 637 (1101)
..|++||+.++
T Consensus 280 ~~i~~~d~~~g 290 (723)
T 1xfd_A 280 SILTLCDATTG 290 (723)
T ss_dssp EEEEEEETTTC
T ss_pred EEEEEEeCCCC
Confidence 45777776655
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-23 Score=255.92 Aligned_cols=345 Identities=12% Similarity=0.014 Sum_probs=225.6
Q ss_pred CCCeEEEEEecCCCeEEEEEc-CC-----eEEEEEccCCceeeeeeeecccc----------------------CCeeEE
Q 001318 407 GVSVNRVIWSPDGSLFGVAYS-RH-----IVQIYSYHGGDEVRQHLEIDAHV----------------------GGVNDI 458 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~-d~-----~i~iwd~~~~~~~~~~~~l~~h~----------------------~~V~~~ 458 (1101)
...|.+++|||||++|++++. |+ .|++||+.+++..... ...++. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999998 88 9999999998754421 222222 238999
Q ss_pred EEcCCCCeEEEEEecCCCcEEEEeCCCCc--eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee
Q 001318 459 AFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY 536 (1101)
Q Consensus 459 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 536 (1101)
+|||||+ .|++++. +.|++||+.++. .+..+..|...+..++|+ +||++|+.++ ++.|++||+.+++.....
T Consensus 115 ~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S--PDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 115 QWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS--PKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp EECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC--TTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred EECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC--CCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 9999999 5776665 899999999883 445677788889999985 6678888887 569999999875544332
Q ss_pred cCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC---------------------------------
Q 001318 537 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--------------------------------- 583 (1101)
Q Consensus 537 ~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------------------------- 583 (1101)
..+...+.. .....+ .......+..+.|+|||++|++++.|+
T Consensus 189 ~~~~~~~~~----g~~~~v-~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 189 ADGSTTIGN----GIAEFV-ADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp CCCCSSEEE----SCCCHH-HHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred cCCccceec----ccccee-eeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 222221100 000000 000000123345555555555555443
Q ss_pred cEEEEECCC-CceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC-----CCcEEEEEecCccccccccccccccccccCCC
Q 001318 584 SIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-----DNGIKILATSDGIRLLRTFENLAYDASRTSEN 657 (1101)
Q Consensus 584 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1101)
.|++||+.+ ++.........+...+.+++| |||++|++++. +..|++||+.++ +....+..+
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~---------- 331 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHET---------- 331 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEE----------
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcC----------
Confidence 789999988 876554432233346789999 99999997764 455777776554 111110000
Q ss_pred CCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccc
Q 001318 658 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 737 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 737 (1101)
T Consensus 332 -------------------------------------------------------------------------------- 331 (741)
T 2ecf_A 332 -------------------------------------------------------------------------------- 331 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001318 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 817 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg 817 (1101)
.++ .-..+..++|+|||
T Consensus 332 --------------------~~~-------------------------------------------~~~~~~~~~~spdg 348 (741)
T 2ecf_A 332 --------------------SPT-------------------------------------------WVPLHNSLRFLDDG 348 (741)
T ss_dssp --------------------CSS-------------------------------------------CCCCCSCCEECTTS
T ss_pred --------------------CCC-------------------------------------------cCCcCCceEECCCC
Confidence 000 00023356778888
Q ss_pred CEEEEEe-CCeEEEEECC-CCceeeEecCCCCCeEEE-EEecCCCcEE-EEEeccC--eEEEEEeec-ceEeeeecCccc
Q 001318 818 SYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFL-AFHPQDNNII-AIGMDDS--SIQIYNVRV-DEVKSKLKGHSK 890 (1101)
Q Consensus 818 ~~la~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l-~~sp~d~~~l-asg~~dg--~v~vwd~~~-~~~~~~l~~h~~ 890 (1101)
+++++++ +|.++||.+. ++. ...+..+...+..+ .|+| +++.| ++++.++ .++||++.. ++....+.. ..
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~ 425 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-AP 425 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SC
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CC
Confidence 8766666 6666666554 344 67777777888887 5999 77655 4555565 899999975 555666665 66
Q ss_pred CeeEEEEcCCCCEEEEEeCC----CceEEEeCCCc
Q 001318 891 RITGLAFSHALNVLVSSGAD----SQLCVWSSDGW 921 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D----~~v~iwd~~~~ 921 (1101)
.+.+++|||||++|+....+ ..+.+|+..++
T Consensus 426 ~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 426 GMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 78899999999998876544 46888988653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=248.17 Aligned_cols=378 Identities=9% Similarity=0.010 Sum_probs=223.4
Q ss_pred CCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccC---CeeEEEEcCCCCeEEEEEecCC---------
Q 001318 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG---GVNDIAFSHPNKQLCVITCGDD--------- 475 (1101)
Q Consensus 408 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~---~V~~~~~s~d~~~~~l~s~~~d--------- 475 (1101)
..+.+++|||||+++++ +.||+|++||+.+++... .+.+|.. .|.+++|||||+ +|++++.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~---~~~~~~~~~~~v~~~~~SpDg~--~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE---EeccccccccccceEEECCCCC--EEEEEecCccceeecce
Confidence 35788999999998877 789999999999987654 3555554 499999999999 67777654
Q ss_pred CcEEEEeCCCCceEEEec---CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCC
Q 001318 476 KTIKVWDATNGAKQYIFE---GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 552 (1101)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 552 (1101)
+.|++||+.+++. ..+. +|...+..++|+ +||+.|+.++. +.|++||+.+++.......+...+
T Consensus 91 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~S--PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~--------- 157 (723)
T 1xfd_A 91 GYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWG--PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV--------- 157 (723)
T ss_dssp SEEEEEESSSCCC-EECCCTTCCSCCCSBCCBC--SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT---------
T ss_pred eeEEEEECCCCce-EeccCCccccccccccEEC--CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc---------
Confidence 7888999999886 3343 444557778874 56688888886 899999998766544333222111
Q ss_pred ceEEeccc--------cCceeEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE
Q 001318 553 TRTYQGFR--------KRSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 553 ~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
++.|.. ...+..++|+|||+.|++++.+ +.+.+|++..... .....+..+.|.++|..
T Consensus 158 --~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~G~~---- 224 (723)
T 1xfd_A 158 --IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-------SIYPTVKPYHYPKAGSE---- 224 (723)
T ss_dssp --EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-------SSSCCCEEEECCBTTSC----
T ss_pred --eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC-------cCCCcceeccCCCCCCC----
Confidence 000100 0122445566666666665533 3455565432110 01122445555555431
Q ss_pred eCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccc
Q 001318 624 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP 703 (1101)
Q Consensus 624 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1101)
..+..|++||+.++ +....+..+..
T Consensus 225 ~~~~~l~~~d~~~~-~~~~~l~~~~~------------------------------------------------------ 249 (723)
T 1xfd_A 225 NPSISLHVIGLNGP-THDLEMMPPDD------------------------------------------------------ 249 (723)
T ss_dssp CCEEEEEEEESSSS-CCCEECCCCCC------------------------------------------------------
T ss_pred CCeeEEEEEECCCC-ceeEEeeCCcc------------------------------------------------------
Confidence 12234555555443 11110000000
Q ss_pred eeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeec
Q 001318 704 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVA 783 (1101)
Q Consensus 704 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 783 (1101)
T Consensus 250 -------------------------------------------------------------------------------- 249 (723)
T 1xfd_A 250 -------------------------------------------------------------------------------- 249 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-----CCeEEEEECCCCceeeEecC-CCCCe----EEEE
Q 001318 784 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-----GGKISLFNMMTFKTMATFMP-PPPAA----TFLA 853 (1101)
Q Consensus 784 ~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-----dg~i~vwd~~~~~~~~~~~~-~~~~i----~~l~ 853 (1101)
. ..+...+..++|||||+++++.. +..|++||+.+++....+.. +...+ ..++
T Consensus 250 ---------------~--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 250 ---------------P--RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPV 312 (723)
T ss_dssp ---------------G--GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCE
T ss_pred ---------------C--CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCce
Confidence 0 00233455566666666655443 14688999988887665543 23333 3789
Q ss_pred EecCCCcEEEE--EeccC------eEEEEE-eecce--EeeeecCcccCeeE-EEEcCCCCEEEEEeCC---CceEEEeC
Q 001318 854 FHPQDNNIIAI--GMDDS------SIQIYN-VRVDE--VKSKLKGHSKRITG-LAFSHALNVLVSSGAD---SQLCVWSS 918 (1101)
Q Consensus 854 ~sp~d~~~las--g~~dg------~v~vwd-~~~~~--~~~~l~~h~~~V~~-l~~s~dg~~l~s~s~D---~~v~iwd~ 918 (1101)
|+| ||+.|+. +..++ .|++|| ..+++ +...+..+...+.. ++|+|||+.|+..+.+ +.+++|++
T Consensus 313 ~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 313 FSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp ECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred EcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 999 7776664 45666 566677 34443 15555544444554 6999999999866655 78999998
Q ss_pred CCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCC--eEEEEEcCCceee
Q 001318 919 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HET--QLAIFETTKLECV 973 (1101)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~--~v~vwd~~~~~~~ 973 (1101)
+.........+.....+. ..+..++|+|||++++.. ... ...+++..++..+
T Consensus 392 ~~~~~~~~~~l~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~ 447 (723)
T 1xfd_A 392 NTVGNFNRQCLSCDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (723)
T ss_dssp CSSTTCCCBCSSTTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred eCCCCCCcceecccccCC---CCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEE
Confidence 753321111111100011 357899999999999883 222 2344565554433
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=242.37 Aligned_cols=248 Identities=7% Similarity=0.006 Sum_probs=156.9
Q ss_pred cEEEEEecCCCeEEEEEecCCcEEEEeCCCcce--eEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER--LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 348 v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
+..+.|+ |.. +++++.|+ | +||+.+++. ....... .+.. ...........+...|.+++|||| ++++.+
T Consensus 28 ~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~--~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAA--DLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF 98 (706)
T ss_dssp CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHH--HHHT-TC-----------CCCEEEEETTT-TEEEEE
T ss_pred CCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechh--Hhhh-hccchhccccccccCceeEEECCC-CeEEEE
Confidence 4557788 554 56666777 8 999999876 2210000 0000 000000000112257999999999 666665
Q ss_pred EcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC-----CceEEEecCcccC--
Q 001318 426 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----GAKQYIFEGHEAP-- 498 (1101)
Q Consensus 426 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~h~~~-- 498 (1101)
. ++.|++||+.+++... +..+...+.+++|||||+ .|+++ .|+.|++||+.+ ++.......+...
T Consensus 99 ~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (706)
T 2z3z_A 99 T-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV 170 (706)
T ss_dssp E-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE
T ss_pred E-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE
Confidence 4 5999999999886543 455677899999999999 56664 679999999998 8776655444443
Q ss_pred ------------eEEEeeeecCCccEEEEEe---------------------------------cCCcEEEEecCCCCce
Q 001318 499 ------------VYSVCPHHKENIQFIFSTA---------------------------------LDGKIKAWLYDNLGSR 533 (1101)
Q Consensus 499 ------------v~~v~~~~~~~~~~l~s~~---------------------------------~dg~i~~wd~~~~~~~ 533 (1101)
+.+++| ++||++|++++ .+..|++||+.+++..
T Consensus 171 ~g~~~~~ee~~~~~~~~~--SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 171 YGQAVHQREFGIEKGTFW--SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp ESSCCGGGCTTCCCSEEE--CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred cccchhhhhcCCCceEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 366777 56778898887 3467888888765433
Q ss_pred eeec--CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEcCCCC--
Q 001318 534 VDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGG-- 604 (1101)
Q Consensus 534 ~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~-- 604 (1101)
.... .+.. .+..++|+|+|+.+++++.++ .|++||+.+++....+.....
T Consensus 249 ~~~~~~~~~~---------------------~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~ 307 (706)
T 2z3z_A 249 YLQTGEPKEK---------------------FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH 307 (706)
T ss_dssp ECCCCSCTTC---------------------EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred eeccCCCCce---------------------eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence 2221 1222 344555566666788777665 899999999843333321111
Q ss_pred -CCCcCeEEEcc--CCCEEEEEeCCCcEEEEEec
Q 001318 605 -LPASPRIRFNK--DGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 605 -~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~ 635 (1101)
...+.+++|+| ||++++++..++.+++|.+.
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred eECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 11246789999 99999999889999999765
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-21 Score=216.17 Aligned_cols=299 Identities=10% Similarity=0.147 Sum_probs=201.3
Q ss_pred ceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC-ceEEeeeccccccCCCCceeee
Q 001318 703 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATAS 781 (1101)
Q Consensus 703 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~ 781 (1101)
.+++++.++.|++|++...........+ .+...+..++|+|+|+.+++++.+ +.+.+|++..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~------------ 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP------------ 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT------------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC------------
Confidence 3445477899999999642211112211 255678899999999988888886 9999999841
Q ss_pred ecCccccCCCccccc-cccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEC---CCCceeeEecCCCCCeEEEEEe
Q 001318 782 VAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMATFMPPPPAATFLAFH 855 (1101)
Q Consensus 782 ~~~~lw~~~~g~~~~-~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~---~~~~~~~~~~~~~~~i~~l~~s 855 (1101)
.++.... ..+. ....+..++|+|+++++++++ ++.|.+||+ .+.+....+..+ ..+.+++|+
T Consensus 70 --------~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s 137 (343)
T 1ri6_A 70 --------DDGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS 137 (343)
T ss_dssp --------TTCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC
T ss_pred --------CCCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC
Confidence 1111110 0011 123688999999999887776 688999999 444555555543 458999999
Q ss_pred cCCCcEEEEEe-ccCeEEEEEeec-ceEee----eecC-cccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCC--ccccc
Q 001318 856 PQDNNIIAIGM-DDSSIQIYNVRV-DEVKS----KLKG-HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG--WEKQK 925 (1101)
Q Consensus 856 p~d~~~lasg~-~dg~v~vwd~~~-~~~~~----~l~~-h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~--~~~~~ 925 (1101)
| ++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|+|++|++++ .++.|.+|+++. ++...
T Consensus 138 ~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 138 P-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp T-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred C-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence 9 888777777 899999999987 64432 2222 334688999999999776554 789999999954 33221
Q ss_pred ceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E-eCCeEEEEEcC--C--ceeeeeccCCCCCCCeeEEEEcCCCCEEEE
Q 001318 926 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETT--K--LECVKQWVPRESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 926 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~-~d~~v~vwd~~--~--~~~~~~~~~~~h~~~i~~l~~spdg~~l~s 999 (1101)
................+..++|+|+|++|++ . .++.|.+||+. + .+.+..+. .+. .+.+++|+|||++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEE
Confidence 2222222211111234568999999998886 4 67899999998 3 34444443 223 3899999999999888
Q ss_pred EE-cCCeEEEEEc--CCceee--eecCCCcccCCCCCCCCccceEEEEeCC
Q 001318 1000 CF-LDATVCVFSA--ANLKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQ 1045 (1101)
Q Consensus 1000 ~s-~dg~v~vwd~--~~~~~~--~~~~~~~~~~~~~~~~~v~~~~i~~~~~ 1045 (1101)
++ .++.|.+|++ .++++. ..+. .+ ..|..++|.++
T Consensus 294 ~~~~~~~v~v~~~d~~~g~~~~~~~~~------~g-----~~p~~i~~~~~ 333 (343)
T 1ri6_A 294 AGQKSHHISVYEIVGEQGLLHEKGRYA------VG-----QGPMWVVVNAH 333 (343)
T ss_dssp ECTTTCEEEEEEEETTTTEEEEEEEEE------CS-----SSCCEEEEEEE
T ss_pred ecCCCCeEEEEEEcCCCceeeEccccc------cC-----CCCeeEEEEcc
Confidence 87 6899999954 466543 2322 12 23557888874
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=240.49 Aligned_cols=284 Identities=11% Similarity=0.086 Sum_probs=202.1
Q ss_pred ccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001318 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 817 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg 817 (1101)
...|.+++|+|| ..++.+ .++.+++||+.. +..... .. +...+.+++|||||
T Consensus 81 ~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~----------------------~~~~~l--~~--~~~~~~~~~~SpdG 132 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA----------------------RKVTYL--FD--TNEETASLDFSPVG 132 (706)
T ss_dssp -CCCEEEEETTT-TEEEEE-ETTEEEEEETTT----------------------TEEEEE--EC--CTTCCTTCEECTTS
T ss_pred ccCceeEEECCC-CeEEEE-ECCEEEEEECCC----------------------CceEEc--cC--CcccccCCcCCCCC
Confidence 356899999999 555555 458999998732 222111 11 45567889999999
Q ss_pred CEEEEEeCCeEEEEECCC-----CceeeEecCCCCC--------------eEEEEEecCCCcEEEEEe------------
Q 001318 818 SYVMSASGGKISLFNMMT-----FKTMATFMPPPPA--------------ATFLAFHPQDNNIIAIGM------------ 866 (1101)
Q Consensus 818 ~~la~~sdg~i~vwd~~~-----~~~~~~~~~~~~~--------------i~~l~~sp~d~~~lasg~------------ 866 (1101)
++|+++.++.|++||+.+ ++.......+... +.+++||| ||++|++++
T Consensus 133 ~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~ 211 (706)
T 2z3z_A 133 DRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIV 211 (706)
T ss_dssp SEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEE
T ss_pred CEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEee
Confidence 999998899999999998 7766544444333 48999999 899999987
Q ss_pred ---------------------ccCeEEEEEeecceEeeee--cCcccCeeEEEEcCCCCEEEEEeCCC-----ceEEEeC
Q 001318 867 ---------------------DDSSIQIYNVRVDEVKSKL--KGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSS 918 (1101)
Q Consensus 867 ---------------------~dg~v~vwd~~~~~~~~~l--~~h~~~V~~l~~s~dg~~l~s~s~D~-----~v~iwd~ 918 (1101)
.+..|++||+.+++..... ..|...+.+++|+|||++|++++.|+ .|++||+
T Consensus 212 ~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~ 291 (706)
T 2z3z_A 212 DYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA 291 (706)
T ss_dssp ECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred ccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence 4578999999988765444 25777899999999999999988776 8999999
Q ss_pred CCcccccceeeecCCCCCCCCCCCeEEEEcC--CCcEEEEE-eCCeEEEEEcC-CceeeeeccCCCCCCCeeE-EEEcCC
Q 001318 919 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVV-HETQLAIFETT-KLECVKQWVPRESSAPITH-ATFSCD 993 (1101)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~la~~-~d~~v~vwd~~-~~~~~~~~~~~~h~~~i~~-l~~spd 993 (1101)
.+++............. ...+..++|+| ||++++++ .++.+++|++. ++..+..+. .|...+.+ ++|+||
T Consensus 292 ~~g~~~~~~~~~~~~~~---~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~~v~~~~~~spd 366 (706)
T 2z3z_A 292 ETGRFVRTLFVETDKHY---VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEWEVTNFAGFDPK 366 (706)
T ss_dssp TTCCEEEEEEEEECSSC---CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSSCEEEEEEECTT
T ss_pred CCCceeeEEEEccCCCe---ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCeEEEeeeEEcCC
Confidence 98732211111111110 01246789999 99988885 67788888776 566666554 55667876 799999
Q ss_pred CCEEEEEEcC-C----eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC----CcEEEEec
Q 001318 994 SQLVYACFLD-A----TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD----GGVHVFEP 1064 (1101)
Q Consensus 994 g~~l~s~s~d-g----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d----g~v~vW~~ 1064 (1101)
|+.|+.++.+ + .|+.||+.+++.. .+. + ...+. .++|+| |+++++..+.+ +.|++||+
T Consensus 367 g~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~------~---~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 367 GTRLYFESTEASPLERHFYCIDIKGGKTK-DLT------P---ESGMH--RTQLSP-DGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp SSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC------C---SSSEE--EEEECT-TSSEEEEEEECSSCSCEEEEEES
T ss_pred CCEEEEEecCCCCceEEEEEEEcCCCCce-ecc------C---CCceE--EEEECC-CCCEEEEEecCCCCCcEEEEEEC
Confidence 9987665544 3 6777888777633 332 1 11244 799999 67877766444 46999999
Q ss_pred cCCC
Q 001318 1065 LESE 1068 (1101)
Q Consensus 1065 ~~~~ 1068 (1101)
.+++
T Consensus 434 ~~~~ 437 (706)
T 2z3z_A 434 GKGS 437 (706)
T ss_dssp SSCE
T ss_pred CCCe
Confidence 8875
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-20 Score=206.27 Aligned_cols=239 Identities=13% Similarity=0.076 Sum_probs=172.7
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc-CC
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-RH 429 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~ 429 (1101)
..|.+++.+++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 467788888899999999999999999987653 23345556 9999999998877766 89
Q ss_pred eEEEEEccCCce-eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC-C--cEEEEeCCCCceEEEecCcccCeEEEeee
Q 001318 430 IVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K--TIKVWDATNGAKQYIFEGHEAPVYSVCPH 505 (1101)
Q Consensus 430 ~i~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 505 (1101)
.|.+||..+++. .. .+..+..+..+++|+|+++ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999875 33 3555666666699999999 56655544 3 8999999999998887744 446788885
Q ss_pred ecCCcc-EEEEEecCCc-EEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE-eCC
Q 001318 506 HKENIQ-FIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDD 582 (1101)
Q Consensus 506 ~~~~~~-~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d 582 (1101)
++|+ ++++...++. |.+|+++......... ....+. ......++|+|+|++++++ ..+
T Consensus 137 --pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------~~~~~~---------~~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 137 --PNGNGLILIDRSSANTVRRFKIDADGVLFDTG--------QEFISG---------GTRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp --TTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------EEEECS---------SSSEEEEEECTTSSEEEEEETTT
T ss_pred --CCCCEEEEEecCCCceEEEEEECCCCcEeecC--------CccccC---------CCCccceEECCCCCEEEEEeCCC
Confidence 4555 4455556688 9999998644332111 000011 1234567777887766554 468
Q ss_pred CcEEEEECCCCce---eEEEcCCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCc
Q 001318 583 FSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 637 (1101)
Q Consensus 583 g~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 637 (1101)
+.|++||+.+++. +..+... ..+..++|+|+|++++++. .++.|.+||..++
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 9999999999988 7777643 3478899999999777665 4788999998876
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=210.30 Aligned_cols=245 Identities=11% Similarity=0.145 Sum_probs=174.8
Q ss_pred CCCCeeEEEEecCCCEEEEEe-C-CeEEEEECC--CCc--eeeEecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEe
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNV 876 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~ 876 (1101)
+...+.+++|+|+|+++++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|++||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 556788899999999998888 4 899999997 544 334455434 789999999 788776665 4889999999
Q ss_pred ---ecceEeeeecCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCC-cccccce--eeecCCCCCCCCCCCeEEEEcC
Q 001318 877 ---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG-WEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 877 ---~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
.+.+.+..+..+. .+.+++|+|||++|++++ .|+.|.+||+.+ ++..... ......+ ..+..++|+|
T Consensus 114 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p 187 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP 187 (343)
T ss_dssp ETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred CCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence 5556666666544 588999999999888877 899999999987 4432211 1222222 3568899999
Q ss_pred CCcEEEE-E-eCCeEEEEEcCC--cee--eeecc--CCCC--CCCeeEEEEcCCCCEEEEE-EcCCeEEEEEcC--Cc--
Q 001318 950 DQIHFLV-V-HETQLAIFETTK--LEC--VKQWV--PRES--SAPITHATFSCDSQLVYAC-FLDATVCVFSAA--NL-- 1014 (1101)
Q Consensus 950 dg~~la~-~-~d~~v~vwd~~~--~~~--~~~~~--~~~h--~~~i~~l~~spdg~~l~s~-s~dg~v~vwd~~--~~-- 1014 (1101)
+|+++++ + .++.+.+|++.. ++. ..... ..++ ...+.+++|+|||++|+++ ..++.|++||+. ++
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 9998776 4 678999999953 332 11111 1111 3467789999999988754 478999999998 33
Q ss_pred eeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe-cCCcEEEEeccCCC
Q 001318 1015 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~-~dg~v~vW~~~~~~ 1068 (1101)
+.+..+. .+ .. +..++|+| |+++|++++ .|+.|.+|++....
T Consensus 268 ~~~~~~~------~~--~~---~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 268 SKEGFQP------TE--TQ---PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp EEEEEEE------CS--SS---CCCEEECT-TSSEEEEECTTTCEEEEEEEETTT
T ss_pred EEeeeec------CC--Cc---cceEEECC-CCCEEEEecCCCCeEEEEEEcCCC
Confidence 3443333 11 11 33799999 678777777 68999999775433
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=208.24 Aligned_cols=286 Identities=13% Similarity=0.052 Sum_probs=196.7
Q ss_pred EEEcCCCce-EEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEE
Q 001318 744 LIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 822 (1101)
Q Consensus 744 l~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 822 (1101)
..|.+++.. +++.+.++.|.+||.. ++....... . +...+ .++|+|+|+++++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQIT-L--GYDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEE-C--CCCEE-EEEECSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEE-c--cCCcc-eEEEcCCCCEEEE
Confidence 345555555 5566678999998863 333222111 1 34445 9999999997777
Q ss_pred Ee--CCeEEEEECCCCce-eeEecCCCCCeEEEEEecCCCcEEEEEeccC---eEEEEEeecceEeeeecCcccCeeEEE
Q 001318 823 AS--GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKLKGHSKRITGLA 896 (1101)
Q Consensus 823 ~s--dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~v~vwd~~~~~~~~~l~~h~~~V~~l~ 896 (1101)
++ ++.|++||..+++. ...+..+.....+++|+| ++++|+++..++ .|++||+.+++.+..+..+. ...+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceE
Confidence 66 68999999999887 777766666555599999 888888655553 89999999999888876544 468999
Q ss_pred EcCCCCEEEEE-eCCCc-eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E-eCCeEEEEEcCCcee
Q 001318 897 FSHALNVLVSS-GADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKLEC 972 (1101)
Q Consensus 897 ~s~dg~~l~s~-s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~-~d~~v~vwd~~~~~~ 972 (1101)
|+|||++|+++ ..++. |.+|++................ ...+..++|+|||+++++ + .++.|.+||+.+++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 99999866554 55688 9999988533211110111111 135689999999997766 4 578999999999887
Q ss_pred ---eeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCcee--eeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 973 ---VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 973 ---~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+.......... .... ..++|+| |
T Consensus 211 ~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~sp-d 283 (331)
T 3u4y_A 211 ITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP-LFGA--NQMALNK-T 283 (331)
T ss_dssp CEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG-GTTC--CCEEECT-T
T ss_pred cceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC-cccc--cceEECC-C
Confidence 666642 46788999999999776554 578899999999987 33332110010110 0001 2589999 6
Q ss_pred CCEEE-EEecCCcEEEEeccCCC
Q 001318 1047 PNEFA-LGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1047 ~~~l~-s~~~dg~v~vW~~~~~~ 1068 (1101)
+++|+ ++..++.|.+||+.+..
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEecCCCCcEEEEEecCCc
Confidence 77765 45556799999998765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-20 Score=205.22 Aligned_cols=273 Identities=11% Similarity=0.103 Sum_probs=206.0
Q ss_pred ccceEEEEEcCCCceEEeeec-------CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeE
Q 001318 738 ATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 810 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~ 810 (1101)
...+..++|+|+++.+++++. ++.|.+||.. ++....... ....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~ 93 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG 93 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence 456789999999998887774 4577777753 333222111 1234678
Q ss_pred EEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCC---------eEEEEEecCCCcEEEEEe--ccCeEEEEEee
Q 001318 811 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA---------ATFLAFHPQDNNIIAIGM--DDSSIQIYNVR 877 (1101)
Q Consensus 811 ~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~---------i~~l~~sp~d~~~lasg~--~dg~v~vwd~~ 877 (1101)
++++++|++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|++||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence 99999999777665 689999999999988887654322 78899999 777666665 47899999999
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
+++.+..+..+...+.+++|+|||++|++++.++.|.+||+.+++..... .. +.......+..++|+|+|++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~--~~--~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK--KL--LDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE--EC--CCSSSCCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE--Ec--CCCCCCcccceEEECCCCCEEEEE
Confidence 99998888766667899999999999999999999999999987643222 11 111111356789999999988774
Q ss_pred --eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecCCCcccCCCCCCCC
Q 001318 958 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1034 (1101)
Q Consensus 958 --~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1101)
.++.|.+||+.+++.+..+... ...+++|+|||+++++++ .++.|.+||..+++.+..+. .+
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~----~~------- 313 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAP----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD----TP------- 313 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECS----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----CC-------
T ss_pred eCCCCEEEEEECCCCcEEEEEEcC----CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----cC-------
Confidence 4589999999999988877642 236799999999766555 68999999999999988765 11
Q ss_pred ccceEEEEeCCCCCEEEEEecCC
Q 001318 1035 VHPLVIAAHPQEPNEFALGLSDG 1057 (1101)
Q Consensus 1035 v~~~~i~~~~~d~~~l~s~~~dg 1057 (1101)
..+..++|+| |+++|+++..++
T Consensus 314 ~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 314 THPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp SEEEEEEECT-TSCEEEEEEECC
T ss_pred CCCCeEEEcC-CCCEEEEEEccc
Confidence 1244899999 678776666553
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-20 Score=207.69 Aligned_cols=181 Identities=13% Similarity=0.088 Sum_probs=142.1
Q ss_pred CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEE
Q 001318 825 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL 904 (1101)
Q Consensus 825 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l 904 (1101)
++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+|||+.|
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l 188 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAV 188 (337)
T ss_dssp CCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCC
T ss_pred CceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEE
Confidence 58899999999888877764 45678899999 88888777 68999999999988877765441 1133789999877
Q ss_pred EEEeCCC------------------------ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC
Q 001318 905 VSSGADS------------------------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 960 (1101)
Q Consensus 905 ~s~s~D~------------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 960 (1101)
+..+.++ .|.+||+.+++.. ...... +. ..+..++|+|||++++++ ++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~---~~---~~~~~~~~s~dg~~l~~~-~~ 260 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI---MD---VFYFSTAVNPAKTRAFGA-YN 260 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE---CS---SCEEEEEECTTSSEEEEE-ES
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC---CC---CceeeEEECCCCCEEEEe-CC
Confidence 6554332 3689999987643 111111 11 256789999999999888 79
Q ss_pred eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 961 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+.+++.+..+.
T Consensus 261 ~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred eEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 999999999988877653 3468899999999999999999999999999999988876
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-20 Score=208.24 Aligned_cols=267 Identities=12% Similarity=0.072 Sum_probs=198.1
Q ss_pred ceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCC-CeeEEEEecCCCEEEEEe--CCe
Q 001318 751 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS--GGK 827 (1101)
Q Consensus 751 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~-~i~~~~~s~dg~~la~~s--dg~ 827 (1101)
.++++++.++.|.+||+.. +..+.....+ +.. .+..++|+|+|++++++. ++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~ 57 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK----------------------MAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSES 57 (337)
T ss_dssp EEEEEEETTTEEEEEETTT----------------------TEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTE
T ss_pred cEEEEcCCCCeEEEEECCC----------------------CcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCe
Confidence 3578888899999998732 2222111101 111 477899999998776654 689
Q ss_pred EEEEECCCCceeeEecCCC-----CCeEEEEEecCCCcEEEEEe------------ccCeEEEEEeecceEeeeecCccc
Q 001318 828 ISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 828 i~vwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~lasg~------------~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
|.+||+.+++.+..+.... ..+..++|+| ++++|+++. .++.|++||+.+++.+..+.. ..
T Consensus 58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp EEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred EEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 9999999998887765321 2577899999 888888886 579999999999888877764 45
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCC--------
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HET-------- 960 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~-------- 960 (1101)
.+.+++|+|||++|+++ ++.|.+||+.+++.... + ..+.. ...+.|+|||++++++ .++
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~--~--~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED--K--PIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE--E--CSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee--e--ecccc-----CCCceeCCCccEEeeeccCCCceeeeeec
Confidence 67889999999988887 68899999998654221 1 11110 1123789999877653 122
Q ss_pred ---------------eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcc
Q 001318 961 ---------------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1025 (1101)
Q Consensus 961 ---------------~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 1025 (1101)
.|.+||+.+++.. ......+...+.+++|+|||++|+++ ++.|++||+.+++.+..+..
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--- 278 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--- 278 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---
T ss_pred cccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---
Confidence 4789999998876 33333556788999999999999988 79999999999998877651
Q ss_pred cCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 1026 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1026 ~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
.. .+..++|+| |+++|++++.++.|.+||+.+++.
T Consensus 279 -~~-------~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 279 -PH-------SYYSVNVST-DGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp -SS-------CCCEEEECT-TSCEEEEESBSSEEEEEETTTCCE
T ss_pred -CC-------ceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcE
Confidence 11 133799999 678888889999999999999883
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-19 Score=203.31 Aligned_cols=249 Identities=11% Similarity=0.080 Sum_probs=182.4
Q ss_pred cCCCCcEEEEEecCCCeEEEEEec------CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.....+..++|+|+|++++++... ++.|.+||..+++.+.... ....+.+++|+
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s 97 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATIN 97 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEEC
Confidence 345678899999999975555533 6789999999988765311 12347789999
Q ss_pred cCCCeEEEE-EcCCeEEEEEccCCceeeeeeeeccccC---------CeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC
Q 001318 417 PDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVG---------GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 486 (1101)
Q Consensus 417 pdg~~las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~---------~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 486 (1101)
|||++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+++.+++...+.++.|.+||+.++
T Consensus 98 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 98 NTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence 999976655 4579999999999886653 322221 278899999999632222246889999999999
Q ss_pred ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeE
Q 001318 487 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566 (1101)
Q Consensus 487 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~ 566 (1101)
+.+..+..+...+.+++|+ ++++++++++.++.|.+||..+.+....+..... + ....+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------~-------~~~~~~~ 235 (353)
T 3vgz_A 175 KLKTAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDD----------G-------KEHFFIN 235 (353)
T ss_dssp EEEEEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS----------S-------SCCCEEE
T ss_pred ceEEEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----------C-------CCcccce
Confidence 9998887666667778874 5667899999999999999988765554433110 0 0113344
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCc
Q 001318 567 VQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 637 (1101)
Q Consensus 567 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 637 (1101)
++++|+++++++++ .++.|.+||..+++.+..+.... ...++|+|+|++++++. .++.|.+||..++
T Consensus 236 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 236 ISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 56666666666655 45999999999999888887432 25699999999766665 6899999998776
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=202.57 Aligned_cols=245 Identities=12% Similarity=0.145 Sum_probs=167.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEECCCCc--eeeEecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEee
Q 001318 804 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVR 877 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~ 877 (1101)
+...+..++|+|||++++++. ++.|++||+.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999444443 3789999997665 3444455677889999999 888888877 78999999996
Q ss_pred c---ceEeeeecC---------cccCeeEEEEcCCCCEEEEEeCCCceEEEeCC-CcccccceeeecCCCCCCCCCCCeE
Q 001318 878 V---DEVKSKLKG---------HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTR 944 (1101)
Q Consensus 878 ~---~~~~~~l~~---------h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 944 (1101)
. .+.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 233333321 12348889999999966777778899999998 443222111222222 24678
Q ss_pred EEEcCCCcEEEEE--eCCeEEEEEcCC--ceee--eeccCCCC----CCCeeEEEEcCCCCEEE-EEEcCCeEEEEEcCC
Q 001318 945 VQFHQDQIHFLVV--HETQLAIFETTK--LECV--KQWVPRES----SAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1013 (1101)
Q Consensus 945 ~~~s~dg~~la~~--~d~~v~vwd~~~--~~~~--~~~~~~~h----~~~i~~l~~spdg~~l~-s~s~dg~v~vwd~~~ 1013 (1101)
++|+|||++++++ .++.+.+|++.. ++.. ..+..... ...+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999977773 578999999874 4432 22211110 14588999999999874 555689999999973
Q ss_pred -c--eeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEec-CCcEEEEecc
Q 001318 1014 -L--KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPL 1065 (1101)
Q Consensus 1014 -~--~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~-dg~v~vW~~~ 1065 (1101)
+ +.+..+.. .+ ..+..++|+| |+++|++++. ++.|.+|++.
T Consensus 272 ~g~~~~~~~~~~-----~~-----~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 272 DGHLTLIQQIST-----EG-----DFPRDFDLDP-TEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp GGCEEEEEEEEC-----SS-----SCCCEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CCcEEEeEEEec-----CC-----CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEe
Confidence 3 33433331 01 2234899999 6787777765 4899999654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-20 Score=226.84 Aligned_cols=334 Identities=12% Similarity=0.074 Sum_probs=218.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC-CCCcCeEEEccCCCEEEEEeC---------CCcEEEEEecC
Q 001318 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTN---------DNGIKILATSD 636 (1101)
Q Consensus 567 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---------dg~i~iw~~~~ 636 (1101)
+.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++. ++.|++||+.+
T Consensus 21 ~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 45666664 55556799999999999998777754321 013789999999999998876 67888888876
Q ss_pred ccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee
Q 001318 637 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 716 (1101)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 716 (1101)
+ +.....
T Consensus 100 g-~~~~~~------------------------------------------------------------------------ 106 (719)
T 1z68_A 100 G-EFVRGN------------------------------------------------------------------------ 106 (719)
T ss_dssp T-EECCSS------------------------------------------------------------------------
T ss_pred C-ccccce------------------------------------------------------------------------
Confidence 6 211000
Q ss_pred eccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccc
Q 001318 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~ 796 (1101)
. -...+..++|||||+.|+.+. ++.|++|++..+.... +- ..+....
T Consensus 107 ------------~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~-----------l~--~~~~~~~ 153 (719)
T 1z68_A 107 ------------E-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ-----------IT--FNGRENK 153 (719)
T ss_dssp ------------C-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-----------CC--CCCBTTT
T ss_pred ------------e-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE-----------Ee--cCCCcCC
Confidence 0 012356689999999888775 6789998874322100 00 0000000
Q ss_pred cccCCCCCC---------CCeeEEEEecCCCEEEEEe-CC----------------------------------eEEEEE
Q 001318 797 NDVTDSNPE---------EAVPCFALSKNDSYVMSAS-GG----------------------------------KISLFN 832 (1101)
Q Consensus 797 ~~~~~~~~~---------~~i~~~~~s~dg~~la~~s-dg----------------------------------~i~vwd 832 (1101)
.+. ++. ....+++|||||++|++++ |. .|++||
T Consensus 154 -v~~--g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 154 -IFN--GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp -EEE--SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred -eEc--ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 000 011 1235899999999999987 42 788999
Q ss_pred CCCCcee--------eEecCCCCCeEEEEEecCCCcEEEEEecc----CeEEEEE----eecceEeeee----cCcccCe
Q 001318 833 MMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYN----VRVDEVKSKL----KGHSKRI 892 (1101)
Q Consensus 833 ~~~~~~~--------~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd----~~~~~~~~~l----~~h~~~V 892 (1101)
+.+++.. ..+.+|...+..++||| |++++++.... ..|++|| +.++++...+ .+|.+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred CCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 9987653 22345777899999999 78888775433 3588999 8788877666 4777777
Q ss_pred e-----EEEEcCCCCEEEE--EeCCC--ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeC---
Q 001318 893 T-----GLAFSHALNVLVS--SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--- 959 (1101)
Q Consensus 893 ~-----~l~~s~dg~~l~s--~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d--- 959 (1101)
. .+.|+|||+.|+. ...++ .|.+|++.+++. ..+..+ . ..+..+.++ +++.++. +.+
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-----~~lt~~-~---~~v~~~~~~-d~~~i~~~~~~~~~ 379 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-----IQITSG-K---WEAINIFRV-TQDSLFYSSNEFEE 379 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-----EECSCS-S---SCEEEEEEE-CSSEEEEEESCGGG
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-----EecccC-c---eEEEEEEEE-eCCEEEEEEecCCC
Confidence 7 8999999996654 44555 466677766441 112211 1 246677777 8887777 443
Q ss_pred --CeEEEEEcCC--cee-eeecc--CCCCCCCeeEEEEcCCCCEEEEE-EcC--CeEEEEEcCCceeeeecC
Q 001318 960 --TQLAIFETTK--LEC-VKQWV--PRESSAPITHATFSCDSQLVYAC-FLD--ATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 --~~v~vwd~~~--~~~-~~~~~--~~~h~~~i~~l~~spdg~~l~s~-s~d--g~v~vwd~~~~~~~~~~~ 1021 (1101)
+..++|.+.. +.. ...+. ..+|...+..+.|||||++++.. +.+ ..+.+||+.+++.+..+.
T Consensus 380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 6788887653 321 12222 12356678899999999987743 333 468999999888665444
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-20 Score=199.59 Aligned_cols=233 Identities=13% Similarity=0.035 Sum_probs=171.1
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEECCC-CceeeEecCC-CCCeEEEEEecCCCcEEEEEe--ccCeEEEEEee--
Q 001318 804 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPP-PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVR-- 877 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~-~~~~~~~~~~-~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~-- 877 (1101)
|...+.+++|+|+|++|++++++.|++||+.+ ++.......+ ...+.+++|+| ++++|++++ .++.+.||.+.
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence 67789999999999999999999999999998 8777666655 36789999999 899999998 44556666554
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEE-EEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
+++ ...+..+. .+..++|+|||++|+ +++.|+.++||+++..... ... ...+. ..+..++|+|+|+++++
T Consensus 119 ~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~---~~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 119 GGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETR-LTHGE---GRNDGPDYSPDGRWIYF 189 (297)
T ss_dssp CCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEE-CCCSS---SCEEEEEECTTSSEEEE
T ss_pred CCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceE-cccCC---CccccceECCCCCEEEE
Confidence 443 44444443 489999999999887 7788999999996432111 111 11221 36789999999998887
Q ss_pred -E-eCCeEEEEEcC-CceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----------CeEEEEEcCCceeeeecCC
Q 001318 957 -V-HETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 957 -~-~d~~v~vwd~~-~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----------g~v~vwd~~~~~~~~~~~~ 1022 (1101)
+ .++.+++|++. .+..+..+. .|...+.+++|+|||++|++++.+ +.|++||+.+++......
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~- 266 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD- 266 (297)
T ss_dssp EECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-
T ss_pred EecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-
Confidence 4 47889999876 444445444 567789999999999999988876 569999999887643322
Q ss_pred CcccCCCCCCCCccceEEEEeCCCCCEEEEEecCC
Q 001318 1023 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1057 (1101)
Q Consensus 1023 ~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg 1057 (1101)
.. +| ...+. .++|+| |+++|++++.|.
T Consensus 267 ---~~-~~-~~~~~--~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 ---LF-GG-QGTMN--SPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp ---EE-ES-TTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred ---cC-CC-Ccccc--cceECC-CCCEEEEEEecc
Confidence 11 11 11233 688999 678888777654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-19 Score=221.62 Aligned_cols=287 Identities=10% Similarity=0.043 Sum_probs=189.4
Q ss_pred ceEEEEEcCCCceEEeeec---------CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeE
Q 001318 740 KISRLIFTNSGNAILALAS---------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 810 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~ 810 (1101)
.+.+++|||||+.|+.++. ++.+++||+. ++..+... . ....+..
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~----------------------~g~~~~~~--~--l~~~~~~ 114 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS----------------------NGEFVRGN--E--LPRPIQY 114 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT----------------------TTEECCSS--C--CCSSBCC
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC----------------------CCccccce--e--cCccccc
Confidence 3678999999999988876 5778877763 33321000 0 1245788
Q ss_pred EEEecCCCEEEEEeCCeEEEEECCCCceeeEe-cCCCCCe-----------------EEEEEecCCCcEEEEEeccC---
Q 001318 811 FALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAA-----------------TFLAFHPQDNNIIAIGMDDS--- 869 (1101)
Q Consensus 811 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~-~~~~~~i-----------------~~l~~sp~d~~~lasg~~dg--- 869 (1101)
++|||||++||.+.++.|++||+.+++..+.. .++...+ .+++||| ||++||+++.|.
T Consensus 115 ~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~ 193 (719)
T 1z68_A 115 LCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDI 193 (719)
T ss_dssp EEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTS
T ss_pred ceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCC
Confidence 99999999999999999999999887765432 2222222 5899999 999999988652
Q ss_pred -------------------------------eEEEEEeecceEe--------eeecCcccCeeEEEEcCCCCEEEEEeCC
Q 001318 870 -------------------------------SIQIYNVRVDEVK--------SKLKGHSKRITGLAFSHALNVLVSSGAD 910 (1101)
Q Consensus 870 -------------------------------~v~vwd~~~~~~~--------~~l~~h~~~V~~l~~s~dg~~l~s~s~D 910 (1101)
.|++||+.+++.. ..+.+|...+.+++||||++++++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~ 273 (719)
T 1z68_A 194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR 273 (719)
T ss_dssp CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence 7899999887643 2345688889999999998877775432
Q ss_pred ----CceEEEe----CCCcccccceeeecCCCCCCCCCCCe-----EEEEcCCCcEEEE--E-eCC--eEEEEEcCCcee
Q 001318 911 ----SQLCVWS----SDGWEKQKNRFLQIPTGRTPTAQSDT-----RVQFHQDQIHFLV--V-HET--QLAIFETTKLEC 972 (1101)
Q Consensus 911 ----~~v~iwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~dg~~la~--~-~d~--~v~vwd~~~~~~ 972 (1101)
..|.+|| +.+++...... ....++. ..+. .++|+|||+.++. + .++ .|.+||+.+++.
T Consensus 274 ~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~ 349 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTWDCPKTQE-HIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA 349 (719)
T ss_dssp STTEEEEEEEEECSSSSSEECCGGGE-EEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC
T ss_pred ccCeEEEEEEcccCCCCCCceEEEEe-cccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce
Confidence 2488899 77765322110 0001222 1333 7899999997665 3 333 688888887763
Q ss_pred eeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCC--cee-eeecCCCcccCCCCCCCCccceEEEEeC
Q 001318 973 VKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAAN--LKL-RCRINPSAYLPAGVSSSNVHPLVIAAHP 1044 (1101)
Q Consensus 973 ~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~v~~~~i~~~~ 1044 (1101)
..+. .+...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+.. .+. ++ ...+. .+.|+|
T Consensus 350 -~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~--~~~-~~-~~~~~--~~~~s~ 419 (719)
T 1z68_A 350 -IQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC--HLR-KE-RCQYY--TASFSD 419 (719)
T ss_dssp -EECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST--TTT-TT-TBCBE--EEEECG
T ss_pred -Eecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC--ccC-CC-CCceE--EEEECC
Confidence 3333 345568888888 88887766665 7888998754 421 222220 011 11 11133 689999
Q ss_pred CCCCEEE-EEecC--CcEEEEeccCCC
Q 001318 1045 QEPNEFA-LGLSD--GGVHVFEPLESE 1068 (1101)
Q Consensus 1045 ~d~~~l~-s~~~d--g~v~vW~~~~~~ 1068 (1101)
|+++++ +++.+ ..+.+|++.+++
T Consensus 420 -dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 420 -YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp -GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred -CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 456555 44444 468899988776
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-19 Score=195.82 Aligned_cols=278 Identities=13% Similarity=0.130 Sum_probs=182.9
Q ss_pred CCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeec---CceEEeeeccccccCCCCceeeeecCc
Q 001318 709 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAPQ 785 (1101)
Q Consensus 709 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~ 785 (1101)
.++.+.+|.++.... ....+.. ..+...+..++|+|+|+ +++++. ++.|.+|++..+..
T Consensus 14 ~~~~i~v~~~d~~tg--~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------------- 75 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAK--TLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------------- 75 (347)
T ss_dssp SCCEEEEEEEETTTT--EEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------
T ss_pred CCCCEEEEEEcCCCC--eEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------
Confidence 456788888764221 1111111 12445677899999999 666654 58999998732211
Q ss_pred cccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECC-CC--ceeeEecC---------CCCCeEE
Q 001318 786 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TF--KTMATFMP---------PPPAATF 851 (1101)
Q Consensus 786 lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~-~~--~~~~~~~~---------~~~~i~~ 851 (1101)
..+.. +. .+...+..++|+|||++|++++ ++.|.+|++. ++ ..+..+.. +...+.+
T Consensus 76 -------~~~~~-~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 76 -------HKLNT-VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp -------EEEEE-EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred -------EEeee-ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence 00000 00 1456688999999999988887 5899999996 22 22333322 1234889
Q ss_pred EEEecCCCcEEEEEeccCeEEEEEee-cceEe--eeecCc-ccCeeEEEEcCCCCEEEE-EeCCCceEEEeCCC--cccc
Q 001318 852 LAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVK--SKLKGH-SKRITGLAFSHALNVLVS-SGADSQLCVWSSDG--WEKQ 924 (1101)
Q Consensus 852 l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~--~~l~~h-~~~V~~l~~s~dg~~l~s-~s~D~~v~iwd~~~--~~~~ 924 (1101)
++|+| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++..
T Consensus 146 ~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 146 TDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence 99999 77777777778999999998 45432 222222 235788999999996665 55688999999874 3322
Q ss_pred cceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E-eCCeEEEEEcCC-c--eeeeeccCCCCCCCeeEEEEcCCCCEEEE
Q 001318 925 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTK-L--ECVKQWVPRESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~-~d~~v~vwd~~~-~--~~~~~~~~~~h~~~i~~l~~spdg~~l~s 999 (1101)
.................+..++|+|||++|++ . .++.|.+|++.. + +.+..+. .+...+.+++|+|||++|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEE
T ss_pred EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEE
Confidence 22222222221111135788999999998866 3 578999999973 2 4444443 34567899999999999888
Q ss_pred EEcC-CeEEEE--EcCCceee
Q 001318 1000 CFLD-ATVCVF--SAANLKLR 1017 (1101)
Q Consensus 1000 ~s~d-g~v~vw--d~~~~~~~ 1017 (1101)
++.+ +.|.+| |..+|++.
T Consensus 303 ~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 303 VNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EETTTTEEEEEEECTTTCCEE
T ss_pred EEcCCCcEEEEEEeCCCCeEE
Confidence 8765 899999 55677665
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=195.09 Aligned_cols=243 Identities=14% Similarity=0.106 Sum_probs=171.6
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCC-cceeEeeeeeeeecCCCCcccccccccCC-CCCeEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNR 412 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~ 412 (1101)
......+..|...|.+++|+|||++ |++++ ++.|.+||+.+ ++... +..+| ...|.+
T Consensus 31 ~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~ 89 (297)
T 2ojh_A 31 TRKMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNND 89 (297)
T ss_dssp TTEEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSC
T ss_pred CCceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccc
Confidence 3445566779999999999999996 66665 78999999998 76543 23344 478999
Q ss_pred EEEecCCCeEEEEE--cCCeEEEEEc--cCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC-CCc
Q 001318 413 VIWSPDGSLFGVAY--SRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGA 487 (1101)
Q Consensus 413 l~~spdg~~las~~--~d~~i~iwd~--~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~ 487 (1101)
++|+|||++|++++ .++.+.||.+ .+++ .. .+..+ ..+.+++|+||++. ++++++.|+.++||++. .+.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence 99999999999998 3345555554 4544 22 24333 35999999999995 34478889999999864 233
Q ss_pred eEEEecCcccCeEEEeeeecCCccEEEEEe-cCCcEEEEecC-CCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 488 KQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 488 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
....+..|...+.+++|+ +++++|+.++ .++.+++|+++ .......+..+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------------------- 221 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYS--PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWF-------------------- 221 (297)
T ss_dssp CEEECCCSSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEE--------------------
T ss_pred cceEcccCCCccccceEC--CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCC--------------------
Confidence 456677788889999985 5557676655 58999999987 33444444444433444
Q ss_pred EEEEcCCCCEEEEEeCC-----------CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001318 566 VVQFDTTKNRFLAAGDD-----------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 627 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 627 (1101)
+.|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|++++|++++.+.
T Consensus 222 -~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 222 -PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred -eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 4555555677776654 569999999887644443222234688899999999999887653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-18 Score=197.27 Aligned_cols=314 Identities=14% Similarity=0.145 Sum_probs=199.4
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..+..+++++++..+++++.++ +++|+........... .....+........ ..+...|.+++|+|+|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg~ 105 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---DDPNKIVDKVQGLL-------VPMKFPIHHLALSCDNL 105 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---CCTTCEEECCCCEE-------ECCSSCEEEEEECTTSC
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---cCcccccccCcccc-------ccCCCcccEEEEcCCCC
Confidence 4678899999999999988887 8888764321100000 00000000000000 12567899999999999
Q ss_pred EEE----EEe-CCeEEEEECCCC--------ce---eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 819 YVM----SAS-GGKISLFNMMTF--------KT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 819 ~la----~~s-dg~i~vwd~~~~--------~~---~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
+|+ +++ |+.|++||+.++ +. +..+.+|...|.+++|+|+++.+||+++.||+|++||+.++..+
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence 999 566 799999998765 21 35567789999999999954899999999999999999998777
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC-CCCCCCCeEEEEcCCCcEEEEE--eC
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLVV--HE 959 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~la~~--~d 959 (1101)
....+|...|++++|+|+|++|++|+.|++|++||++ ++... .+...... ......+.+++|++++.++++. .+
T Consensus 186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 7777899999999999999999999999999999998 32211 11111110 0111378999999999988772 44
Q ss_pred C------eEEEEEcCCcee-----eeeccC-----CCCCCCeeEEEEcCCCCEEEEEEc-CCeEEEEEcCCc--ee-eee
Q 001318 960 T------QLAIFETTKLEC-----VKQWVP-----RESSAPITHATFSCDSQLVYACFL-DATVCVFSAANL--KL-RCR 1019 (1101)
Q Consensus 960 ~------~v~vwd~~~~~~-----~~~~~~-----~~h~~~i~~l~~spdg~~l~s~s~-dg~v~vwd~~~~--~~-~~~ 1019 (1101)
| .+++|++.+.+. ...+.. .+...+-..+.+-+|.+++++++. .+.|.|...... .. ...
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~ 342 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL 342 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence 3 389999976521 111110 011222333444478888776664 333666654321 01 000
Q ss_pred cC--CCcccCCCCCCCCccceEEEEe--CCC------------CCEEEEEecCCcEEEEeccC
Q 001318 1020 IN--PSAYLPAGVSSSNVHPLVIAAH--PQE------------PNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1020 ~~--~~~~~~~~~~~~~v~~~~i~~~--~~d------------~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+. ....+|-.......+++.+++. ..+ --.|..-+.||.+..|.+-+
T Consensus 343 ~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 343 LEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp ECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 00 0111222112233445555443 211 13577888899999999976
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-18 Score=210.25 Aligned_cols=233 Identities=14% Similarity=0.108 Sum_probs=158.6
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCC-----CeEEEEEecCCC
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS 420 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 420 (1101)
....+++|+|||++ ++++ |+.|++||+.+++... ++.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSEE-EEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCcE-EEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCC
Confidence 45668999999984 7775 8999999999998654 2344432 334589999999
Q ss_pred eEEEEEcC---------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE
Q 001318 421 LFGVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 491 (1101)
Q Consensus 421 ~las~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 491 (1101)
+|+.++.+ +.+.+||+.+++... +..|...+..++|||||+. |+.+ .|+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEE
Confidence 99999886 566799999987543 6678889999999999994 5555 468999999998876542
Q ss_pred -ecCcccCe-----------------EEEeeeecCCccEEEEEecCCc-EEEEecCCCCceeeecCCCCceeEEEEccCC
Q 001318 492 -FEGHEAPV-----------------YSVCPHHKENIQFIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 552 (1101)
Q Consensus 492 -~~~h~~~v-----------------~~v~~~~~~~~~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 552 (1101)
..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+...|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 23333323 23556 577788888876554 8888764321110 122334444444444
Q ss_pred ceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC---Cc--eeEEEcCC----CCCCCcCeEEEccCCCEEEEE
Q 001318 553 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ--LLTSIDAD----GGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~--~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
. . .....|++||+.+ ++ ....+... ++...+..++|+|||+.++..
T Consensus 223 ~---------------------~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 223 A---------------------V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp S---------------------C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred C---------------------c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 3 1 1123689999998 73 23333321 133457889999999977765
Q ss_pred eC----CCcEEEEEecCc
Q 001318 624 TN----DNGIKILATSDG 637 (1101)
Q Consensus 624 ~~----dg~i~iw~~~~~ 637 (1101)
.. +..|++||+.++
T Consensus 278 ~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDES 295 (740)
T ss_dssp EESSTTEEEEEEEEEETT
T ss_pred eCCCCCEEEEEEEECCCC
Confidence 43 236999999887
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.3e-19 Score=196.04 Aligned_cols=237 Identities=13% Similarity=0.089 Sum_probs=179.8
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEE-EEEeccCeEEEEEeecceEeeeec
Q 001318 810 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~l~ 886 (1101)
.++++++++++++++ ++.|++||..+++.+..+..+. ..+..++|+| +++++ +++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 346778888888888 8999999999999888876543 2578999999 77654 555678999999999998887765
Q ss_pred Cc------ccCeeEEEEcCCCCEEEEEeCC------------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEc
Q 001318 887 GH------SKRITGLAFSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 948 (1101)
Q Consensus 887 ~h------~~~V~~l~~s~dg~~l~s~s~D------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 948 (1101)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.+++.... ......+ ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRTFPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEEEECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce--eeeccCC----CcccceeEC
Confidence 33 2347899999999999998865 8999999988553221 1111111 257889999
Q ss_pred CCCcEEEEEeCCeEEEEEcCCceeeeeccCCC------------------------------------------------
Q 001318 949 QDQIHFLVVHETQLAIFETTKLECVKQWVPRE------------------------------------------------ 980 (1101)
Q Consensus 949 ~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~------------------------------------------------ 980 (1101)
|||+ ++++ ++.|.+||+.+++.+..+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5553 4459999999988776554321
Q ss_pred ------------------CCCCeeEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEE
Q 001318 981 ------------------SSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1041 (1101)
Q Consensus 981 ------------------h~~~i~~l~~sp-dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~ 1041 (1101)
+...+.+++|+| ||++|+++ ++.|++||+.+++.+..+. .... +. .++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~-----~~--~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDHT-----YY--CVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSSC-----CC--EEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCCC-----cc--ceE
Confidence 011456778889 99999888 8899999999999887765 1111 33 799
Q ss_pred EeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 1042 AHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1042 ~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
|+| |+++|++++.++.|.+||+.+++.
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccce
Confidence 999 678888888999999999998873
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-18 Score=195.96 Aligned_cols=266 Identities=13% Similarity=0.067 Sum_probs=170.1
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE-
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG- 423 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 423 (1101)
...++.+++++++.+ +++|+.|+ |+||+.......... ..+. .............|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNKP---GDDP-NKIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCCT---TCCT-TCEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhccc---ccCc-ccccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 456899999999995 78888887 899886432110000 0000 0000001111234677899999999999999
Q ss_pred ---EEEcCCeEEEEEccCC--------ceeeeeeeeccccCCeeEEEEcCC-CCeEEEEEecCCCcEEEEeCCCCceEEE
Q 001318 424 ---VAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI 491 (1101)
Q Consensus 424 ---s~~~d~~i~iwd~~~~--------~~~~~~~~l~~h~~~V~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 491 (1101)
+|+.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.|++|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999765 233334567789999999999998 55 799999999999999999988777
Q ss_pred ecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcC
Q 001318 492 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 571 (1101)
Q Consensus 492 ~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 571 (1101)
..+|...|.+++|++ +|++|++|+.||+|++||.+ +.....+..+... ...+...+..++|++
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~--------------~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY--------------ESDHPVRVLDVLWIG 250 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC--------------CTTSCEEEEEEEEEE
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCccc--------------CCCCceeEEEEEEec
Confidence 778999999999964 56899999999999999998 3444333332110 000011333444444
Q ss_pred CCCEEEE-EeCCC------cEEEEECCCCc-----eeEEEcCC-----CCCCCcCeEEEccCCCEEEEEeC-CCcEEEEE
Q 001318 572 TKNRFLA-AGDDF------SIKFWDMDSVQ-----LLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTN-DNGIKILA 633 (1101)
Q Consensus 572 ~~~~l~~-~~~dg------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~ 633 (1101)
++.++++ ...+| .+++|++...+ ....+... ........+.+-++.+++++++. .+.|.++.
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA 330 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence 4444544 33343 38999997652 11221111 11111112333367677666654 45577776
Q ss_pred ec
Q 001318 634 TS 635 (1101)
Q Consensus 634 ~~ 635 (1101)
..
T Consensus 331 ~~ 332 (434)
T 2oit_A 331 RQ 332 (434)
T ss_dssp EC
T ss_pred ec
Confidence 43
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-19 Score=210.80 Aligned_cols=228 Identities=11% Similarity=0.040 Sum_probs=162.6
Q ss_pred cceEEEEEcCCCceEEeeec---CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 739 TKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
..+..++|+|| +.++++.. +....+|.+.. |+...... +. ....+...+|+|
T Consensus 65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~-----------------~~~g~~~~----l~---~~~~~~~~~~s~ 119 (582)
T 3o4h_A 65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT-----------------SRPGEEQR----LE---AVKPMRILSGVD 119 (582)
T ss_dssp SEECEECTTCS-EEEEEEECSTTSCCEEEEEEET-----------------TSTTCCEE----CT---TSCSBEEEEEEE
T ss_pred cccccccCCCC-eEEEEeccCCCCcceEEEEEec-----------------cCCCcccc----cc---CCCCceeeeeCC
Confidence 46677889988 66665554 45556665421 11111111 11 122344678888
Q ss_pred CCCE--EEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc----CeEEEEEeecceEeeeecCcc
Q 001318 816 NDSY--VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEVKSKLKGHS 889 (1101)
Q Consensus 816 dg~~--la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~~~~~l~~h~ 889 (1101)
||+. ++++.++.+.+||+.+++.......+. .+++||| ||++||+++.+ +.|++||+.+++.. .+..|.
T Consensus 120 dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~ 194 (582)
T 3o4h_A 120 TGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGE 194 (582)
T ss_dssp CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSS
T ss_pred CCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCC
Confidence 8864 344446667799999887655544332 8899999 99999988877 78999999888754 678898
Q ss_pred cCeeEEEEcCCCCEEEEEeCCC--ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE--------EcCCCcEEEE-Ee
Q 001318 890 KRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ--------FHQDQIHFLV-VH 958 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~dg~~la~-~~ 958 (1101)
+.+..++|||||++|++++.++ .|++||+++++.. ...++. ..+..++ |+|||..+++ ..
T Consensus 195 ~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 195 GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE------DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE------ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE------EccCCC---cChhhhhhccccceeEcCCCcEEEEEEc
Confidence 9999999999999999888888 8999999986642 222322 2444555 9999977777 58
Q ss_pred CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe---EEEEEcCC
Q 001318 959 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT---VCVFSAAN 1013 (1101)
Q Consensus 959 d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~---v~vwd~~~ 1013 (1101)
++.+++|++ ++.... +...+.+++|+ ||+++++++.+.+ |++||..+
T Consensus 266 ~g~~~l~~~--g~~~~~-----~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 266 EGRSAVFID--GERVEA-----PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TTEEEEEET--TEEECC-----CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCcEEEEEE--CCeecc-----CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999999999 666542 24678999999 9999999888755 67777654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=209.77 Aligned_cols=271 Identities=10% Similarity=0.046 Sum_probs=187.0
Q ss_pred ccCCeeEEEEcCCCCeEEEEEecC-CCcEEEEeCCCCceEEEecCcc-cCeEEEeeeecCCccEEEEEec---CCcEEEE
Q 001318 451 HVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTAL---DGKIKAW 525 (1101)
Q Consensus 451 h~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~~~---dg~i~~w 525 (1101)
+..+|.+++|+|||+ .|++++. |++++||++.+++.. .+..|. ..+..++|+ +| +++++++. +...++|
T Consensus 20 ~~~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYG--VG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp HHSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTT--CS-EEEEEEECSTTSCCEEEE
T ss_pred hccchheeecCCCCC--eEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCC--CC-eEEEEeccCCCCcceEEE
Confidence 356899999999999 6777766 999999998666654 454454 678889986 44 67777765 5556776
Q ss_pred ecCC--CCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC
Q 001318 526 LYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG 603 (1101)
Q Consensus 526 d~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 603 (1101)
.++. ......+.... .....+|+|+|+ ..+++.+.++.+.+||+.+++.........
T Consensus 94 ~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~--------------------~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~ 152 (582)
T 3o4h_A 94 KVNTSRPGEEQRLEAVK-PMRILSGVDTGE--------------------AVVFTGATEDRVALYALDGGGLRELARLPG 152 (582)
T ss_dssp EEETTSTTCCEECTTSC-SBEEEEEEECSS--------------------CEEEEEECSSCEEEEEEETTEEEEEEEESS
T ss_pred EEeccCCCccccccCCC-CceeeeeCCCCC--------------------eEEEEecCCCCceEEEccCCcEEEeecCCC
Confidence 6554 33222222211 122334444443 223444445556699999987766554321
Q ss_pred CCCCcCeEEEccCCCEEEEEeCC----CcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccc
Q 001318 604 GLPASPRIRFNKDGCLLAVSTND----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 679 (1101)
Q Consensus 604 ~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
.+++|+|||++|++++.+ +.|++||+.++. .. .+
T Consensus 153 -----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~-~l----------------------------------- 190 (582)
T 3o4h_A 153 -----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LR-VF----------------------------------- 190 (582)
T ss_dssp -----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CE-EE-----------------------------------
T ss_pred -----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ce-Ee-----------------------------------
Confidence 789999999999988766 567777765541 10 00
Q ss_pred cccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC
Q 001318 680 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 759 (1101)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 759 (1101)
T Consensus 191 -------------------------------------------------------------------------------- 190 (582)
T 3o4h_A 191 -------------------------------------------------------------------------------- 190 (582)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CC--eEEEEECCCC
Q 001318 760 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTF 836 (1101)
Q Consensus 760 g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg--~i~vwd~~~~ 836 (1101)
. .+...+..++|||||++|+++. ++ .|++||+.++
T Consensus 191 ----------------------------------------~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 191 ----------------------------------------D--SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp ----------------------------------------C--CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred ----------------------------------------e--cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 0 0334456677777777777555 56 7889999888
Q ss_pred ceeeEecCCCCCeEEEE--------EecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEe
Q 001318 837 KTMATFMPPPPAATFLA--------FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 908 (1101)
Q Consensus 837 ~~~~~~~~~~~~i~~l~--------~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s 908 (1101)
+.. .+.+|...+..++ |+| ||+++++++.||.+++|++ ++.... +.+.|.+++|+ ||+++++++
T Consensus 229 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 229 SVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp CEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEE
T ss_pred cEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEc
Confidence 777 7777777677677 999 7799999999999999999 666553 34678999999 999999988
Q ss_pred CCCc---eEEEeCCC
Q 001318 909 ADSQ---LCVWSSDG 920 (1101)
Q Consensus 909 ~D~~---v~iwd~~~ 920 (1101)
.+.+ +.+|+..+
T Consensus 301 ~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 301 SLSTPPRIVSLPSGE 315 (582)
T ss_dssp ETTEEEEEEEETTCC
T ss_pred CCCCCCeEEEEcCCC
Confidence 8754 66666543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-17 Score=201.26 Aligned_cols=334 Identities=10% Similarity=0.020 Sum_probs=211.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC-CCc--CeEEEccCCCEEEEEeCC---------CcEEEEE
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PAS--PRIRFNKDGCLLAVSTND---------NGIKILA 633 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~~~~s~~~~~l~~~~~d---------g~i~iw~ 633 (1101)
.+.|+|++.+++++ |+.|++||+.+++....+..+... ..+ ..++|||||++|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 45666776677775 999999999999988777765421 112 348999999999998875 4455777
Q ss_pred ecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcc
Q 001318 634 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 713 (1101)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 713 (1101)
+.++ +..+ +
T Consensus 99 ~~~~-~~~~-l--------------------------------------------------------------------- 107 (740)
T 4a5s_A 99 LNKR-QLIT-E--------------------------------------------------------------------- 107 (740)
T ss_dssp TTTT-EECC-S---------------------------------------------------------------------
T ss_pred CCCC-cEEE-c---------------------------------------------------------------------
Confidence 6655 1110 1
Q ss_pred eeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcc
Q 001318 714 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 793 (1101)
Q Consensus 714 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~ 793 (1101)
..+...+...+|||||+.|+.+ .++.|++|++..+.... . . ..|.
T Consensus 108 ---------------------~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~---l---------t-~~g~ 152 (740)
T 4a5s_A 108 ---------------------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR---I---------T-WTGK 152 (740)
T ss_dssp ---------------------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE---C---------C-SCCB
T ss_pred ---------------------ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE---E---------c-CCCC
Confidence 1134567899999999988877 56789998874322100 0 0 0000
Q ss_pred ccccccCCCCCC---------CCeeEEEEecCCCEEEEEe-C-C-----------------------------------e
Q 001318 794 MMTNDVTDSNPE---------EAVPCFALSKNDSYVMSAS-G-G-----------------------------------K 827 (1101)
Q Consensus 794 ~~~~~~~~~~~~---------~~i~~~~~s~dg~~la~~s-d-g-----------------------------------~ 827 (1101)
... .+. ++. ....+++|||||++||.++ | + +
T Consensus 153 ~~~-~~~--g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~ 229 (740)
T 4a5s_A 153 EDI-IYN--GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK 229 (740)
T ss_dssp TTT-EEE--SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred ccc-eec--CcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence 000 000 011 2234689999999999875 2 2 4
Q ss_pred EEEEECCC---Cc--eeeEec------CCCCCeEEEEEecCCCcEEEEEec----cCeEEEEEeecce----Eee--ee-
Q 001318 828 ISLFNMMT---FK--TMATFM------PPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE----VKS--KL- 885 (1101)
Q Consensus 828 i~vwd~~~---~~--~~~~~~------~~~~~i~~l~~sp~d~~~lasg~~----dg~v~vwd~~~~~----~~~--~l- 885 (1101)
|++||+.+ ++ ....+. ++...+..++|+| |+++++.... +..|++||+.+++ +.. .+
T Consensus 230 l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~ 308 (740)
T 4a5s_A 230 FFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI 308 (740)
T ss_dssp EEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE
T ss_pred EEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee
Confidence 88899988 73 233343 3677799999999 8887766543 3479999999887 332 22
Q ss_pred -cCcccCee-----EEEEcCCCCEEE-EEeC-C--CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 886 -KGHSKRIT-----GLAFSHALNVLV-SSGA-D--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 886 -~~h~~~V~-----~l~~s~dg~~l~-s~s~-D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
.+|...|. .++|+|||+.|+ ..+. + ..|.+||+.+++. .++..+. ..+..+. .+|++.++
T Consensus 309 ~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~----~~v~~~~-~~d~~~i~ 378 (740)
T 4a5s_A 309 EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGT----WEVIGIE-ALTSDYLY 378 (740)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSS----SCEEEEE-EECSSEEE
T ss_pred eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCC----EEEEEEE-EEeCCEEE
Confidence 45665554 789999999887 6653 3 3588888887542 2333332 2344443 24477666
Q ss_pred E-EeC-----C--eEEEEEcCCceeeeeccC--CCCCCCeeEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeeeecC
Q 001318 956 V-VHE-----T--QLAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 956 ~-~~d-----~--~v~vwd~~~~~~~~~~~~--~~h~~~i~~l~~spdg~~l~s~s~d---g~v~vwd~~~~~~~~~~~ 1021 (1101)
. +.. + .|...++.++.....+.. .+.......+.||||+++++..... ..+.+++..+++.+..+.
T Consensus 379 f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 379 YISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp EEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 6 432 2 455556665544323321 1234678899999999987755543 368889988887655443
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-17 Score=185.47 Aligned_cols=276 Identities=11% Similarity=0.093 Sum_probs=181.8
Q ss_pred cCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC----ceEEeeeccccccCCCCceeeeec
Q 001318 708 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN----AIHLLWKWQRTERNSSGKATASVA 783 (1101)
Q Consensus 708 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~ 783 (1101)
+.++.|.+|.+............ . +......++|+|+|++|++++.+ +.+.+|++..
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~----~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~-------------- 84 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSD----A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK-------------- 84 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEE----E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET--------------
T ss_pred CCCCCEEEEEEeCCCCCEEEeec----c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC--------------
Confidence 34578999988643221111110 1 44566779999999999888875 7999998743
Q ss_pred CccccCCCcccccc-ccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEe------cC--------CC
Q 001318 784 PQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF------MP--------PP 846 (1101)
Q Consensus 784 ~~lw~~~~g~~~~~-~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~------~~--------~~ 846 (1101)
.+|.+... ... .+...+..+++ +++++++++ ++.|.+|++.....+..+ .+ +.
T Consensus 85 ------~~g~~~~~~~~~--~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 154 (361)
T 3scy_A 85 ------EKGTLHLLNTQK--TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM 154 (361)
T ss_dssp ------TTTEEEEEEEEE--CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred ------CCCcEEEeeEec--cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence 11221110 000 13445667777 888888876 689999999754332211 11 12
Q ss_pred CCeEEEEEecCCCcEEEEEe-ccCeEEEEEeecce-------E------eeeecCcccCeeEEEEcCCCCEEEEEe-CCC
Q 001318 847 PAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE-------V------KSKLKGHSKRITGLAFSHALNVLVSSG-ADS 911 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~-------~------~~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~ 911 (1101)
..+.+++|+| ++++|++++ .++.|++|++.... + ......+.....+++|+|||++|++++ .++
T Consensus 155 ~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 233 (361)
T 3scy_A 155 PHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG 233 (361)
T ss_dssp CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred CcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence 3458899999 887665554 58899999987543 1 111223445578999999999887777 689
Q ss_pred ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e--CCeEEEEEcC--Cce--eeeeccCCCCCCC
Q 001318 912 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--ETQLAIFETT--KLE--CVKQWVPRESSAP 984 (1101)
Q Consensus 912 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~--d~~v~vwd~~--~~~--~~~~~~~~~h~~~ 984 (1101)
.|.+|++.+++......+.....+. .....++|+|||++|+++ . ++.|.+|++. +++ .+..+. . ...
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~ 307 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIH 307 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSC
T ss_pred eEEEEEecCCceEEeEEEecCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCC
Confidence 9999999876543322222222221 245799999999998774 3 4789999985 444 333333 2 457
Q ss_pred eeEEEEcCCCCEEEEEE-cCCeEEEE--EcCCceeeee
Q 001318 985 ITHATFSCDSQLVYACF-LDATVCVF--SAANLKLRCR 1019 (1101)
Q Consensus 985 i~~l~~spdg~~l~s~s-~dg~v~vw--d~~~~~~~~~ 1019 (1101)
+.+++|+|||++|++++ .++.|.+| |..+|++...
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 88999999999988887 67899996 4557776543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-16 Score=178.92 Aligned_cols=230 Identities=12% Similarity=0.110 Sum_probs=145.5
Q ss_pred ceEEEEEcCCCceEEeee-cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 740 KISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
....+++ +++.+++++ .++.+.+|++............ +.....+... ...+...+.+++|+|||+
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~------~~~~g~~~~~-----~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV------IEFKGSGPDK-----ERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE------EECCCCCSCT-----TTCSSCCEEEEEECTTSS
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee------EEccCCCCCc-----cccCCCcceEEEECCCCC
Confidence 3455666 677666665 4688999987532110000000 0000000000 001344578899999999
Q ss_pred EEEEEe--CCeEEEEECCCCce------e-------eEecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeecceE-
Q 001318 819 YVMSAS--GGKISLFNMMTFKT------M-------ATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEV- 881 (1101)
Q Consensus 819 ~la~~s--dg~i~vwd~~~~~~------~-------~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~~- 881 (1101)
+++++. ++.|++|++..... + .....+...+..++|+| |+++|++++ .++.|.+|++.+++.
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLD 246 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceE
Confidence 877766 68999998875431 1 11223455688999999 888777776 689999999987754
Q ss_pred -eeee---cCcccCeeEEEEcCCCCEEEEEeCC--CceEEEeCC--CcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 882 -KSKL---KGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 882 -~~~l---~~h~~~V~~l~~s~dg~~l~s~s~D--~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
+..+ ..+.....+++|+|||++|+++..+ +.|.+|+++ +++......... + ..+..++|+|||++
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~ 319 (361)
T 3scy_A 247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKY 319 (361)
T ss_dssp EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCE
T ss_pred EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCE
Confidence 2222 3344557899999999998766654 889999996 333222211221 2 25689999999999
Q ss_pred EEEE--eCCeEEEE--EcCCceeeeeccCCCCCCCeeEEEEc
Q 001318 954 FLVV--HETQLAIF--ETTKLECVKQWVPRESSAPITHATFS 991 (1101)
Q Consensus 954 la~~--~d~~v~vw--d~~~~~~~~~~~~~~h~~~i~~l~~s 991 (1101)
|+++ .++.|.+| |..+++...... ..+...+.|+.|.
T Consensus 320 l~~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~~~~p~~v~~~ 360 (361)
T 3scy_A 320 LLVACRDTNVIQIFERDQATGLLTDIKK-DIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEEECSC-CEECSSEEEEEEE
T ss_pred EEEEECCCCCEEEEEEECCCCcEeecce-eeeCCCCeEEEEc
Confidence 8885 46889996 555676654421 1235578999886
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-18 Score=189.51 Aligned_cols=250 Identities=10% Similarity=0.082 Sum_probs=169.9
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEECC-CCceeeEecC-CCCCeEEEEEecCCCc--EEEEEe-------------cc
Q 001318 806 EAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMP-PPPAATFLAFHPQDNN--IIAIGM-------------DD 868 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~sp~d~~--~lasg~-------------~d 868 (1101)
..+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| +++ +++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 45788999999999998884499999997 7766543321 112366789999 888 455553 68
Q ss_pred CeEEEEEee-cceEeeeec----CcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCC-CcccccceeeecCCCCCCCCCC
Q 001318 869 SSIQIYNVR-VDEVKSKLK----GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQS 941 (1101)
Q Consensus 869 g~v~vwd~~-~~~~~~~l~----~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 941 (1101)
|.+.+|++. ++++...+. .+...+.+++|+|||++|++++. ++.|++|+++ +++......+.... +. ..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---DH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---CC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---CC
Confidence 999999997 466544443 24567899999999998887764 6789999998 65532211122111 01 35
Q ss_pred CeEEEEcCCCcEEEEE--eCCeEEEEEcC--Cceee------eeccC--CCCCC------CeeEEE-EcCCCCEEEEEEc
Q 001318 942 DTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV------KQWVP--RESSA------PITHAT-FSCDSQLVYACFL 1002 (1101)
Q Consensus 942 v~~~~~s~dg~~la~~--~d~~v~vwd~~--~~~~~------~~~~~--~~h~~------~i~~l~-~spdg~~l~s~s~ 1002 (1101)
+..++|+|||++++++ .++.|.+|++. +++.. ..+.. .+|.. .+..++ |+|||++|++++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 7899999999998884 36799999765 55542 12211 12222 588999 9999999887764
Q ss_pred CC------eEEEEEcC-CceeeeecCCCcccCCCCCCCCccceEEEEeCC--CCCEEEEEecC-CcEEEEeccCC
Q 001318 1003 DA------TVCVFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSD-GGVHVFEPLES 1067 (1101)
Q Consensus 1003 dg------~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~--d~~~l~s~~~d-g~v~vW~~~~~ 1067 (1101)
+. +|.+|++. +|++...... .+ .+ . ..+..++|+|. |+++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~---~~-~~-~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFL---SP-TP-T--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEE---EE-CS-S--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeee---ee-cC-C--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33 89999996 6765432110 00 00 0 11225889995 57888888765 89999999765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=185.00 Aligned_cols=260 Identities=12% Similarity=0.077 Sum_probs=181.4
Q ss_pred EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE-EcC
Q 001318 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSR 428 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d 428 (1101)
.++++++++ ++++++.++.|.+||+.+++.+.... .+....+..++|+|||++++++ ..+
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~~ 64 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNHY 64 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETTT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCCC
Confidence 456777776 68999999999999999987765311 1122257899999999976554 568
Q ss_pred CeEEEEEccCCceeeeeeeeccc-----cCCeeEEEEcCCCCeEEEEEecCC------------CcEEEEeCCCCce---
Q 001318 429 HIVQIYSYHGGDEVRQHLEIDAH-----VGGVNDIAFSHPNKQLCVITCGDD------------KTIKVWDATNGAK--- 488 (1101)
Q Consensus 429 ~~i~iwd~~~~~~~~~~~~l~~h-----~~~V~~~~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~--- 488 (1101)
+.|.+||+.+++...... + ++ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 65 ~~i~~~d~~t~~~~~~~~-~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 140 (349)
T 1jmx_B 65 GDIYGIDLDTCKNTFHAN-L-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 140 (349)
T ss_dssp TEEEEEETTTTEEEEEEE-S-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred CcEEEEeCCCCcEEEEEE-c-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccce
Confidence 999999999987654321 1 22 23488999999999 56666644 8999999998543
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCC---------------------C---cee
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------------------R---WCT 544 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---------------------~---~v~ 544 (1101)
+..+.. ...+.+++|+ ++|+ ++.++ +.|.+||..+++....+.... . ...
T Consensus 141 ~~~~~~-~~~~~~~~~s--~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (349)
T 1jmx_B 141 VRTFPM-PRQVYLMRAA--DDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 214 (349)
T ss_dssp SEEEEC-CSSCCCEEEC--TTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred eeeccC-CCcccceeEC--CCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeee
Confidence 344443 3357777774 5556 55554 449999998877665554331 0 234
Q ss_pred EEEEccCCceE---------E---e-----------ccccCceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 001318 545 TMAYSADGTRT---------Y---Q-----------GFRKRSLGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTSID 600 (1101)
Q Consensus 545 ~~~~s~~~~~~---------~---~-----------~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1101)
.+++++++... + . .........++++| ++++++++ ++.|++||+.+++.+..+.
T Consensus 215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~ 292 (349)
T 1jmx_B 215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN 292 (349)
T ss_dssp EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc
Confidence 45555543210 0 0 00122456778899 99999888 8899999999999888876
Q ss_pred CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccc
Q 001318 601 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 601 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
... .+.+++|+|+|++|++++.++.|.+||..++ +.+..+
T Consensus 293 ~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~ 332 (349)
T 1jmx_B 293 LDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI 332 (349)
T ss_dssp CSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred CCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeee
Confidence 433 3678999999999998888999999999887 444444
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-16 Score=176.10 Aligned_cols=221 Identities=12% Similarity=0.072 Sum_probs=155.7
Q ss_pred CeeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-ceE
Q 001318 807 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV 881 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~ 881 (1101)
....++++|||++|+++. ++.|.+||+.+++.+.+ +.. . ....+.+.|.+...+++.+.||.+.+|++.. ++.
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 456688999999988875 36899999999988877 552 2 2233567784557788889999999999865 554
Q ss_pred e------eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCC------CCCCCCCCCeEEEEcC
Q 001318 882 K------SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT------GRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 882 ~------~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~ 949 (1101)
. ..+..+..++ .+.+++++..++..+.++.|.+||+............... +.. ......++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--p~g~~~~a~~~ 263 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV--PGGYNLVGLHR 263 (361)
T ss_dssp EEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE--ECCSSCEEEET
T ss_pred eeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc--cCCeeEEEEec
Confidence 4 1223333332 3455788888888888999999999764322111111110 000 01223479999
Q ss_pred CCcEEEEE-e-----------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc--e
Q 001318 950 DQIHFLVV-H-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--K 1015 (1101)
Q Consensus 950 dg~~la~~-~-----------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~--~ 1015 (1101)
|++.++++ . .+.|.+||+.+++.+..+.. +. +.+++|+|||++|++++. ++|.|||..++ +
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence 98888874 3 24899999999999998874 23 999999999999998886 99999999999 9
Q ss_pred eeeecCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001318 1016 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1048 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~ 1048 (1101)
.+.++. ..| -.|..++++| ||.
T Consensus 339 ~~~~i~-----~~G-----~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 339 LLRTIE-----GAA-----EASLQVQFHP-VGG 360 (361)
T ss_dssp EEEEET-----TSC-----SSEEEEEECC-CSC
T ss_pred eeEEec-----cCC-----CCcEEEEecC-CCC
Confidence 888763 112 3355799999 453
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=181.17 Aligned_cols=175 Identities=9% Similarity=0.041 Sum_probs=114.5
Q ss_pred ccCCCCCeEE-----EEEecCCCeEEEEEc-CC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC
Q 001318 403 VKDPGVSVNR-----VIWSPDGSLFGVAYS-RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474 (1101)
Q Consensus 403 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~ 474 (1101)
+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5566655555 899999999999987 66 48888999887544 2345656666789999999 6888888
Q ss_pred CCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCce
Q 001318 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 554 (1101)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 554 (1101)
++.|++||+.+++....+..+...+....|..++++.+++....++ ... .+....
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~-------~~~------------------~~~~~~ 155 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRR-------EDW------------------VPLTDW 155 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEG-------GGC------------------CCCCSH
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccC-------ccc------------------cccccc
Confidence 8999999999998877776666655555554466666665422110 000 000000
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCC
Q 001318 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTND 626 (1101)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 626 (1101)
.... ..+....+..|++||+.+++........ ..+..++|+| ||+.|+....+
T Consensus 156 --~~~~--------------~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~~~~~~sp~dg~~l~~~~~~ 209 (388)
T 3pe7_A 156 --KKFH--------------EFYFTKPCCRLMRVDLKTGESTVILQEN---QWLGHPIYRPYDDSTVAFCHEG 209 (388)
T ss_dssp --HHHH--------------HHGGGCCCEEEEEEETTTCCEEEEEEES---SCEEEEEEETTEEEEEEEEECS
T ss_pred --chhh--------------hhhccCCcceEEEEECCCCceEEeecCC---ccccccEECCCCCCEEEEEEec
Confidence 0000 0011223467899999988765554422 2477899999 99998877653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=179.41 Aligned_cols=250 Identities=10% Similarity=0.020 Sum_probs=169.0
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc-ccCCCCCCCCeeEEEEecCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKND 817 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~-~~~~~~~~~~i~~~~~s~dg 817 (1101)
..+..++|+|+|++|++++.+ .+.+|++.. +|.+... .... + +.+.+++|+|||
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~---------------------~g~~~~~~~~~~--~-g~~~~~~~spdg 94 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKS---------------------PTEIVHEASHPI--G-GHPRANDADTNT 94 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEE---------------------TTEEEEEEEEEC--C-SSGGGGCTTSCC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECC---------------------CCCEEEeeEeec--C-CCCccEEECCCC
Confidence 467789999999988888877 899998741 1111100 0000 1 124568899999
Q ss_pred CE--EEEE--------------eCCeEEEEECC-CCceeeEec----CCCCCeEEEEEecCCCcEEEEEec-cCeEEEEE
Q 001318 818 SY--VMSA--------------SGGKISLFNMM-TFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN 875 (1101)
Q Consensus 818 ~~--la~~--------------sdg~i~vwd~~-~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd 875 (1101)
++ ++++ .++.+.+|++. +++....+. .+...+.+++|+| ||++|++++. ++.|++||
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~ 173 (365)
T 1jof_A 95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHR 173 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEE
Confidence 94 4444 36889999997 466544433 2456799999999 8888877664 67999999
Q ss_pred ee-cceEe--eeec--CcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCC--Cccccc-ceeeecCCCC-CCCCC-----
Q 001318 876 VR-VDEVK--SKLK--GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD--GWEKQK-NRFLQIPTGR-TPTAQ----- 940 (1101)
Q Consensus 876 ~~-~~~~~--~~l~--~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~--~~~~~~-~~~~~~~~~~-~~~~~----- 940 (1101)
+. +++.. ..+. .|...+..++|+|||++|++++. +++|.+|+++ +++... ...+...... .....
T Consensus 174 ~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (365)
T 1jof_A 174 KLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG 253 (365)
T ss_dssp ECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred ECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccc
Confidence 98 67543 3333 24566899999999999988775 6899999876 343211 1112222111 10001
Q ss_pred -CCeEEE-EcCCCcEEEEE--eCC-----eEEEEEcC-Cceeeeecc-CCCCCCCeeEEEEcC---CCCEEEEEEcC-Ce
Q 001318 941 -SDTRVQ-FHQDQIHFLVV--HET-----QLAIFETT-KLECVKQWV-PRESSAPITHATFSC---DSQLVYACFLD-AT 1005 (1101)
Q Consensus 941 -~v~~~~-~s~dg~~la~~--~d~-----~v~vwd~~-~~~~~~~~~-~~~h~~~i~~l~~sp---dg~~l~s~s~d-g~ 1005 (1101)
.+..++ |+|||++|+++ .++ .|.+|++. +++...... ...+...+..++|+| ||++|++++.+ +.
T Consensus 254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~ 333 (365)
T 1jof_A 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW 333 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence 367899 99999998773 333 89999996 565443211 112345677899999 89999988865 89
Q ss_pred EEEEEcCCc
Q 001318 1006 VCVFSAANL 1014 (1101)
Q Consensus 1006 v~vwd~~~~ 1014 (1101)
|.||+++..
T Consensus 334 v~v~~~~~~ 342 (365)
T 1jof_A 334 LEIYRWKDE 342 (365)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEchh
Confidence 999999776
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-16 Score=179.96 Aligned_cols=252 Identities=13% Similarity=0.014 Sum_probs=160.2
Q ss_pred eeecccCCCCcEE-----EEEecCCCeEEEEEecCC--cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCe
Q 001318 338 VTRTLNQGSSPMS-----MDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 410 (1101)
Q Consensus 338 ~~~~~~h~~~v~~-----~~~spdg~~llatg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 410 (1101)
+.++..|...... .+|||||++|++++..+| .|.+||+.+++... +..+|...+
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~ 83 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNT 83 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCS
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCc
Confidence 3344445555555 899999998555544467 48888998887654 345566666
Q ss_pred EEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEE--EcCCCCeEEEEE-----------------
Q 001318 411 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVIT----------------- 471 (1101)
Q Consensus 411 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~--~s~d~~~~~l~s----------------- 471 (1101)
..++|||||++|+.++.++.|++||+.+++... .+..+...+.... ++++++ +++.
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHH
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchh
Confidence 678999999999999999999999999987544 2334445454444 489998 4442
Q ss_pred -----ecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC------CcEEEEecCCCCceeeecCCC
Q 001318 472 -----CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPG 540 (1101)
Q Consensus 472 -----~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~ 540 (1101)
.+.+..|.+||+.+++... +..+...+..+.|++. +|..|+.++.+ ..|.++|....... .+..+.
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~ 235 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHA 235 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCC
T ss_pred hhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCC
Confidence 2345789999999987544 4446667888888540 56777776653 36777777654332 222222
Q ss_pred --CceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-CC----CcEEEEECCCCceeEEEcCCC--CC-CCcCe
Q 001318 541 --RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DD----FSIKFWDMDSVQLLTSIDADG--GL-PASPR 610 (1101)
Q Consensus 541 --~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d----g~i~iwd~~~~~~~~~~~~~~--~~-~~v~~ 610 (1101)
..+....|+||| +.|+..+ .+ ..|++||+.+++......... +. .....
T Consensus 236 ~~~~~~~~~~spdg---------------------~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 236 EGESCTHEFWVPDG---------------------SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp TTEEEEEEEECTTS---------------------SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred CCcccccceECCCC---------------------CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 134444555555 4454433 22 239999999987543322111 00 01233
Q ss_pred EEEccCCCEEEEE---------eCCCcEEEEEecCc
Q 001318 611 IRFNKDGCLLAVS---------TNDNGIKILATSDG 637 (1101)
Q Consensus 611 ~~~s~~~~~l~~~---------~~dg~i~iw~~~~~ 637 (1101)
++|+|||+.|+.. ..+..|++||+.++
T Consensus 295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp SEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 5799999988864 44568999998776
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-15 Score=165.66 Aligned_cols=304 Identities=10% Similarity=0.095 Sum_probs=193.4
Q ss_pred CCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEe----------cCCcEEEEecCCCCceeeecCCCCce
Q 001318 474 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA----------LDGKIKAWLYDNLGSRVDYEAPGRWC 543 (1101)
Q Consensus 474 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~~~~~v 543 (1101)
.|+.|.+||..+++.+.++..+..+ .++| ++++++++++. .++.|.+||..+.+....+.......
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 4789999999999999888776665 6776 56778888876 36789999998766655443221000
Q ss_pred eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEE-EcCCCCCCCcCeEEEccCC-CE
Q 001318 544 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD--DFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDG-CL 619 (1101)
Q Consensus 544 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~ 619 (1101)
........++++|+|++++++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..
T Consensus 105 ---------------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~ 165 (361)
T 2oiz_A 105 ---------------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRS 165 (361)
T ss_dssp ---------------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSE
T ss_pred ---------------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCee
Confidence 00012334666777778888763 68999999999988877 65321 2235677865 67
Q ss_pred EEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCcccccc
Q 001318 620 LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA 699 (1101)
Q Consensus 620 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1101)
+++.+.||.+.+|+.....+..... +.
T Consensus 166 ~~~~~~dg~~~~v~~~~~g~~~~~~--~~--------------------------------------------------- 192 (361)
T 2oiz_A 166 FMTICGDGGLLTINLGEDGKVASQS--RS--------------------------------------------------- 192 (361)
T ss_dssp EEEEETTSSEEEEEECTTSSEEEEE--EC---------------------------------------------------
T ss_pred EEEECCCCcEEEEEECCCCcEeeec--cc---------------------------------------------------
Confidence 8888899999999886521222100 00
Q ss_pred CccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCcee
Q 001318 700 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT 779 (1101)
Q Consensus 700 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 779 (1101)
..+|+... .. ..+.+++++..++..+.++.+.++|+...... ..
T Consensus 193 -------------~~~~~~~~------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~----~~ 236 (361)
T 2oiz_A 193 -------------KQMFSVKD------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK----VD 236 (361)
T ss_dssp -------------CCCSCTTT------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE----EE
T ss_pred -------------cceEcCCC------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCce----ec
Confidence 00011000 00 00111334444444455566666665321100 00
Q ss_pred eeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe------------CCeEEEEECCCCceeeEecCCCC
Q 001318 780 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMATFMPPPP 847 (1101)
Q Consensus 780 ~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s------------dg~i~vwd~~~~~~~~~~~~~~~ 847 (1101)
..|............ .......++++||++.++++. .+.|.+||+.+++.+.++..+.
T Consensus 237 -----~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 237 -----GPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp -----EEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred -----ccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 001111100000000 011122378999988877653 2379999999999999998776
Q ss_pred CeEEEEEecCCCcEEEEEeccCeEEEEEeecc--eEeeeecCcccCeeEEEEcCCCC
Q 001318 848 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALN 902 (1101)
Q Consensus 848 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~ 902 (1101)
+.+++|+| |+++|++++. +.|.|||..++ +.+.++..+...-..++++|||.
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999 8889988886 99999999999 99999877777788999999985
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-15 Score=164.67 Aligned_cols=252 Identities=13% Similarity=0.076 Sum_probs=184.9
Q ss_pred CCCeeEEEEecCCCEEEEEe-C------------------------CeEEEEECCCCceeeEec-CCCCCeEEEEEecCC
Q 001318 805 EEAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMATFM-PPPPAATFLAFHPQD 858 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d 858 (1101)
-..+.+++++++|+++++.. + +.|.+||..+++.+..+. ++......+++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 45689999999999998887 4 379999999888877664 3445789999999 8
Q ss_pred CcEEEEEeccCeEEEEEeecce-Eeeee---------cCcccCeeEEEEcC-CCCEEEEEe-CCCceEEEeCCCcccccc
Q 001318 859 NNIIAIGMDDSSIQIYNVRVDE-VKSKL---------KGHSKRITGLAFSH-ALNVLVSSG-ADSQLCVWSSDGWEKQKN 926 (1101)
Q Consensus 859 ~~~lasg~~dg~v~vwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-dg~~l~s~s-~D~~v~iwd~~~~~~~~~ 926 (1101)
++++++...++.|++||..... .+..+ .++.....+|+|+| +|.++++.+ .++.|++|+.+. .....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8888888889999999975432 44444 34555789999999 788888886 689999999543 32111
Q ss_pred eeeecCCCC---CCCCCCCeEEEEcCC-CcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC------CCC
Q 001318 927 RFLQIPTGR---TPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC------DSQ 995 (1101)
Q Consensus 927 ~~~~~~~~~---~~~~~~v~~~~~s~d-g~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp------dg~ 995 (1101)
. .....+. .........++++|+ |.++++ ..++.|++||..+++.+..+....+...+.+++|+| +|+
T Consensus 181 ~-~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 W-GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp E-CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred e-ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 1 0000000 001124689999999 666565 377899999999999988887666778899999999 333
Q ss_pred EEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCC
Q 001318 996 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 996 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
.+++.+.+..|++||..+++.+..+... .+ ..-.|..++++| +|.++++...++.|++|++...
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~---~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPV----RK---HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCS----SS---CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCC----CC---ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 3333334558999999999998876521 11 112355899999 6788999999999999998653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-14 Score=162.69 Aligned_cols=332 Identities=12% Similarity=0.112 Sum_probs=218.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec--Cccccccccccccccc
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAYDA 651 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~ 651 (1101)
..+++...++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. ++ +.+..+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~------ 237 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIK------ 237 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEE------
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEe------
Confidence 356677789999999999999998887432 35689999999999999999999999985 33 2221110
Q ss_pred cccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccc
Q 001318 652 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 731 (1101)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 731 (1101)
T Consensus 238 -------------------------------------------------------------------------------- 237 (567)
T 1qks_A 238 -------------------------------------------------------------------------------- 237 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccccceEEEEEc----CCCceEEeeec-CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCC-C
Q 001318 732 LPENLRATKISRLIFT----NSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-E 805 (1101)
Q Consensus 732 ~~~~~~~~~i~~l~~s----~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~-~ 805 (1101)
.......++|+ |||++++++.. ++.+.++|..+. +.+....+.-..... . ..| .
T Consensus 238 -----~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~------~~~~~i~~~~~~~~~-~--------~~~p~ 297 (567)
T 1qks_A 238 -----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL------EPKKIQSTRGMTYDE-Q--------EYHPE 297 (567)
T ss_dssp -----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC------CEEEEEECCEECTTT-C--------CEESC
T ss_pred -----cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC------cEEEEEecccccccc-c--------cccCC
Confidence 11234678999 69998887776 488999885331 111111000000000 0 001 2
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceee--EecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeecce
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE 880 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~ 880 (1101)
..+..+..++++..+++.. .|.|.++|..+.+.+. .+. .......+.|+| ++++++++. .++.|.++|+.+++
T Consensus 298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCc
Confidence 2577889999887666654 5999999988654322 222 234566889999 888776665 67899999999998
Q ss_pred EeeeecC-----cccCeeEEEEcCCCCE-EEEEe-CCCceEEEeCCCcccc--cceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 881 VKSKLKG-----HSKRITGLAFSHALNV-LVSSG-ADSQLCVWSSDGWEKQ--KNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 881 ~~~~l~~-----h~~~V~~l~~s~dg~~-l~s~s-~D~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
++..+.- |.+.-.. -++|++.. .++.. .+++|.++|..+.+.. ....++...... ..-..+.++|++
T Consensus 376 l~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~ 451 (567)
T 1qks_A 376 LVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG---GGSLFIKTHPNS 451 (567)
T ss_dssp EEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCEECCTTC
T ss_pred EEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC---CCCEEEEeCCCC
Confidence 8776643 4332222 25787544 44543 4689999999873210 011222222111 122557899999
Q ss_pred cEEEEEe--------CCeEEEEEcCCc---------eeeee--cc-CCCCCCCeeEEEEcCCCCEEEEEE-----cCCeE
Q 001318 952 IHFLVVH--------ETQLAIFETTKL---------ECVKQ--WV-PRESSAPITHATFSCDSQLVYACF-----LDATV 1006 (1101)
Q Consensus 952 ~~la~~~--------d~~v~vwd~~~~---------~~~~~--~~-~~~h~~~i~~l~~spdg~~l~s~s-----~dg~v 1006 (1101)
+++.+.. .++|.+||+.+. +.+.. |. .......+..+.|+|||+.+..+. .++.|
T Consensus 452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i 531 (567)
T 1qks_A 452 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESAL 531 (567)
T ss_dssp SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEE
T ss_pred CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcE
Confidence 9999854 359999999887 22211 11 111245789999999999877664 37899
Q ss_pred EEEEcCCceeeeecC
Q 001318 1007 CVFSAANLKLRCRIN 1021 (1101)
Q Consensus 1007 ~vwd~~~~~~~~~~~ 1021 (1101)
.|+|..+++++.+++
T Consensus 532 ~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 532 VVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEETTTTEEEEEEC
T ss_pred EEEECCCceEEEEeC
Confidence 999999999998877
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-14 Score=155.48 Aligned_cols=243 Identities=11% Similarity=0.116 Sum_probs=177.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC------CCCCeEEEEEecCCCcEEEEEec-cCeEEEEE
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN 875 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd 875 (1101)
+-..+.+++++++++++++.. ++.|.+||.. ++.+..+.. +...+..+++++.+++++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 456689999999999888776 7999999987 566666532 33568899995327777776644 89999999
Q ss_pred eecceEeeeec-CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEE
Q 001318 876 VRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 954 (1101)
Q Consensus 876 ~~~~~~~~~l~-~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 954 (1101)
.+++.+..+. .+...+.+++++++|+++++...++.|.+|+...... ..+.. .++. ..+..++++++|+++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~---~~~~~-~~~~---~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL---HKFGC-SKHL---EFPNGVVVNDKQEIF 178 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE---EEEEC-TTTC---SSEEEEEECSSSEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE---EEeCC-CCcc---CCcEEEEECCCCCEE
Confidence 5677666664 3446789999999999888888889999999754211 11111 1111 357899999999977
Q ss_pred EEE-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC-eEEEEEcCCceeeeecCCCcccCCCCCC
Q 001318 955 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYLPAGVSS 1032 (1101)
Q Consensus 955 a~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1032 (1101)
++. .++.|++||.. ++.+..+...++...+..++++++|+++++...++ .|.+||. +++.+..+... .
T Consensus 179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~----~---- 248 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK----V---- 248 (286)
T ss_dssp EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES----S----
T ss_pred EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc----C----
Confidence 774 68899999984 55555555444456889999999999888887776 9999995 56666655411 1
Q ss_pred CCccceEEEEeCCCCCEEEEEecCCcEEEEeccCC
Q 001318 1033 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1033 ~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
....+.+++++| +++++++ +.|+.|++|++...
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 112345899999 6777666 67999999998653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-14 Score=160.04 Aligned_cols=253 Identities=12% Similarity=0.109 Sum_probs=184.3
Q ss_pred CCCcEEEEEecCCCeEEEEEecC------------------------CcEEEEeCCCcceeEeeeeeeeecCCCCccccc
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNV------------------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 400 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1101)
-+.+.+++++|+|+ ++++.+.+ +.|.+||..+++.+..
T Consensus 23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------- 84 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS----------------- 84 (329)
T ss_dssp CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence 36799999999998 57777766 4799999988876542
Q ss_pred ccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCc-eeeeeeee------ccccCCeeEEEEcC-CCCeEEEEEe
Q 001318 401 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEI------DAHVGGVNDIAFSH-PNKQLCVITC 472 (1101)
Q Consensus 401 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l------~~h~~~V~~~~~s~-d~~~~~l~s~ 472 (1101)
.-.++-.....++++|+|+++++...++.|++||..... .+..+... .++......++|+| ++. ++++.
T Consensus 85 -~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv~d 161 (329)
T 3fvz_A 85 -SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFVSD 161 (329)
T ss_dssp -ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC--EEEEE
T ss_pred -cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe--EEEEe
Confidence 122455678999999999988888889999999987642 22211000 34555789999999 666 67777
Q ss_pred c-CCCcEEEEeCCCCceEEEecC----------cccCeEEEeeeecCC-ccEEEEEecCCcEEEEecCCCCceeeec--C
Q 001318 473 G-DDKTIKVWDATNGAKQYIFEG----------HEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVDYE--A 538 (1101)
Q Consensus 473 ~-~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~v~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~ 538 (1101)
+ .++.|++|| .+|+.+..+.. +......+++. ++ +.++++...++.|++||..+++....+. .
T Consensus 162 ~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d--~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 162 GYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALV--PHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp CSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred CCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEE--CCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 6 689999999 77888877742 23347888875 44 5788888889999999998766665553 2
Q ss_pred CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcC-CCCCCCcCeEEEccCC
Q 001318 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDG 617 (1101)
Q Consensus 539 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~ 617 (1101)
....+..++++| +. .+..+++.+++...+..|++|+..+++.+..+.. ..+......++++|+|
T Consensus 239 ~~~~~~~~~~~p-g~--------------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 239 FGRNVFAISYIP-GF--------------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp TTTCEEEEEEET-TE--------------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred cCCCcceeeecC-CE--------------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence 344566666666 32 1112333344445667999999999999888742 2334457899999999
Q ss_pred CEEEEEeCCCcEEEEEecC
Q 001318 618 CLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 618 ~~l~~~~~dg~i~iw~~~~ 636 (1101)
.++++...++.|++|++..
T Consensus 304 ~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 304 TVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEESSSCCEEEEEEEE
T ss_pred CEEEEECCCCEEEEEeCCc
Confidence 8888888899999999864
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-15 Score=171.75 Aligned_cols=297 Identities=10% Similarity=0.054 Sum_probs=184.3
Q ss_pred CeEEEEEecCCCeEEEEEcC---CeEEEEEccCCceeeeeeeeccccCC-eeEEEEcCCCCeEEEEEecCCCcEEEEeCC
Q 001318 409 SVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDAT 484 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~-V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 484 (1101)
.+.+++|||||++|+.+..+ ..|.+||+.+++... +..+... ...+.|+|||+ .|+.++.++.|++||+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence 47889999999999887653 478889998876433 3333333 33488999999 67788888899999999
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
+++.......+.. | .++|..|+..+.++...+|.. ...++|+++
T Consensus 111 ~~~~~~~~~~~~~------~--~~~g~~l~~~~~~~~~~~~~~-----------------~~~~spdg~----------- 154 (396)
T 3c5m_A 111 TLEEQVIYTVDEE------W--KGYGTWVANSDCTKLVGIEIL-----------------KRDWQPLTS----------- 154 (396)
T ss_dssp TCCEEEEEECCTT------E--EEEEEEEECTTSSEEEEEEEE-----------------GGGCCCCCS-----------
T ss_pred CCCcEEEEecccc------c--CCCCCEEEeccCCcccccccc-----------------ccccCCCCc-----------
Confidence 8887665554433 2 233355665555555554431 122344443
Q ss_pred eEEEEcCCCCEEEEE-----eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCC------cEEEE
Q 001318 565 GVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN------GIKIL 632 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg------~i~iw 632 (1101)
.++.. ..+..|++||+.+++....... ...+..+.|+| +++.|+..+.++ .|.+|
T Consensus 155 ----------~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (396)
T 3c5m_A 155 ----------WEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLV 221 (396)
T ss_dssp ----------HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEE
T ss_pred ----------ceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEecCCCCCCCceEEEE
Confidence 34332 3566899999998876655532 23477899999 788777765432 35555
Q ss_pred EecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCc
Q 001318 633 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 712 (1101)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 712 (1101)
++.++ .. +.+
T Consensus 222 d~~~~-~~-~~l-------------------------------------------------------------------- 231 (396)
T 3c5m_A 222 NEDGS-NV-RKI-------------------------------------------------------------------- 231 (396)
T ss_dssp ETTSC-CC-EES--------------------------------------------------------------------
T ss_pred ECCCC-ce-eEe--------------------------------------------------------------------
Confidence 54332 10 000
Q ss_pred ceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC-----ceEEeeeccccccCCCCceeeeecCccc
Q 001318 713 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-----AIHLLWKWQRTERNSSGKATASVAPQLW 787 (1101)
Q Consensus 713 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~lw 787 (1101)
. .......+..++|+|+|+.|+..+.+ +.|++||+.
T Consensus 232 ------------------~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~------------------- 272 (396)
T 3c5m_A 232 ------------------K--EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE------------------- 272 (396)
T ss_dssp ------------------S--CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT-------------------
T ss_pred ------------------e--ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC-------------------
Confidence 0 00012356788999999988777654 347777653
Q ss_pred cCCCccccccccCCCCCCCCeeEEEEec-CCCEEEEEe-----------------CCeEEEEECCCCceeeEecCCCC--
Q 001318 788 QPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-----------------GGKISLFNMMTFKTMATFMPPPP-- 847 (1101)
Q Consensus 788 ~~~~g~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~s-----------------dg~i~vwd~~~~~~~~~~~~~~~-- 847 (1101)
++....... .. ... ++|+| ||++++++. +..|++||+.+++.. .+..+..
T Consensus 273 ---~g~~~~l~~----~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~ 342 (396)
T 3c5m_A 273 ---TLENEEVMV----MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSW 342 (396)
T ss_dssp ---TCCEEEEEE----CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCC
T ss_pred ---CCCeEEeee----CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcc
Confidence 332211100 11 122 88999 999888753 367999999887653 4443433
Q ss_pred ---------CeEEEEEecCCCcEEEEEec-cCeEEEEE--eecce
Q 001318 848 ---------AATFLAFHPQDNNIIAIGMD-DSSIQIYN--VRVDE 880 (1101)
Q Consensus 848 ---------~i~~l~~sp~d~~~lasg~~-dg~v~vwd--~~~~~ 880 (1101)
.+..++|+| |++.|+.++. ++...||. +.++.
T Consensus 343 ~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 343 DVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred ccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEEEEcccc
Confidence 256789999 7877776654 55555554 44443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-13 Score=158.91 Aligned_cols=328 Identities=13% Similarity=0.093 Sum_probs=211.6
Q ss_pred EEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecC--CCCceeeecCCCCcee
Q 001318 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEAPGRWCT 544 (1101)
Q Consensus 467 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~v~ 544 (1101)
+++++...+++|.++|..+++.+.++... ..+..+.| +++|+++++++.|+.|.+||+. +.+....+.. .....
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~--SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~ 243 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR 243 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEE--CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCc
Confidence 37888899999999999999999888643 34567776 5677899999999999999995 5444443332 12233
Q ss_pred EEEEccCCceEEeccccCceeEEEEc----CCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCC---------CCCcCe
Q 001318 545 TMAYSADGTRTYQGFRKRSLGVVQFD----TTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG---------LPASPR 610 (1101)
Q Consensus 545 ~~~~s~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~ 610 (1101)
. ++|+ |+|+++++++ .+++|.++|..+.+.+..+...+. ...+..
T Consensus 244 ~---------------------ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 244 S---------------------IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp E---------------------EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred e---------------------eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 4 4455 3555666655 569999999999998888763221 112344
Q ss_pred EEEccCCCEEEEE-eCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccC
Q 001318 611 IRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 689 (1101)
Q Consensus 611 ~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1101)
+..++++..+++. ..+|.|.++|..+...
T Consensus 303 i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-------------------------------------------------- 332 (567)
T 1qks_A 303 ILASHYRPEFIVNVKETGKILLVDYTDLNN-------------------------------------------------- 332 (567)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEETTCSSE--------------------------------------------------
T ss_pred EEEcCCCCEEEEEecCCCeEEEEecCCCcc--------------------------------------------------
Confidence 5555543332222 2234444444322100
Q ss_pred CCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccc
Q 001318 690 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 769 (1101)
Q Consensus 690 ~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 769 (1101)
+.+..+
T Consensus 333 ------------------------------------------------------------------------~~v~~i-- 338 (567)
T 1qks_A 333 ------------------------------------------------------------------------LKTTEI-- 338 (567)
T ss_dssp ------------------------------------------------------------------------EEEEEE--
T ss_pred ------------------------------------------------------------------------ceeeee--
Confidence 000000
Q ss_pred cccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecC---
Q 001318 770 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP--- 844 (1101)
Q Consensus 770 ~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~--- 844 (1101)
........+.|+|+|++++++. +++|.++|+.+++.+..+.-
T Consensus 339 ---------------------------------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 339 ---------------------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp ---------------------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred ---------------------------------eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 0122345678899999888776 68899999999887766643
Q ss_pred --CCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeec-------ceEeeeecCcccCeeEEEEcCCCCEEEEEeC-----
Q 001318 845 --PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGA----- 909 (1101)
Q Consensus 845 --~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~----- 909 (1101)
|.+.-.. -++|+++.+++++. .++.|.++|..+ .+.++++......-..+.++||+++|.+...
T Consensus 386 ~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 386 TPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp SBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred CCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence 3221222 26783355555553 468999999987 6778887765444355789999999988663
Q ss_pred --CCceEEEeCCCccc----ccceeeecC--CCCCCCCCCCeEEEEcCCCcEEEEE--e----CCeEEEEEcCCceeeee
Q 001318 910 --DSQLCVWSSDGWEK----QKNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVV--H----ETQLAIFETTKLECVKQ 975 (1101)
Q Consensus 910 --D~~v~iwd~~~~~~----~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~~--~----d~~v~vwd~~~~~~~~~ 975 (1101)
..+|.|+|+.+.+. .....+.+. .+-......+..+.|+++|+++.++ . ++.|.|+|.++++.+..
T Consensus 465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV 544 (567)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence 35899999987511 111222210 0000011367899999999988874 2 68999999999998887
Q ss_pred cc
Q 001318 976 WV 977 (1101)
Q Consensus 976 ~~ 977 (1101)
+.
T Consensus 545 i~ 546 (567)
T 1qks_A 545 IK 546 (567)
T ss_dssp EC
T ss_pred eC
Confidence 65
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=176.91 Aligned_cols=244 Identities=9% Similarity=-0.020 Sum_probs=161.8
Q ss_pred cccCCCCcEEEEEecCCCeEEEEE--ecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeE-------
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVG--TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN------- 411 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~------- 411 (1101)
+.+|...|..++|++++-+ ++++ +.++...||....+.... .+..|...|.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYS 78 (662)
T ss_dssp HHHTCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTC
T ss_pred HhhcCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccC
Confidence 5568999999999988653 5555 457889999964443332 1445555555
Q ss_pred --EEEEe--cCCCe-EEEEEc-CCeEEEEEcc--C-Cceeeeeeeecc-----ccCCeeEEEEcCCCCeEEEEEecCC--
Q 001318 412 --RVIWS--PDGSL-FGVAYS-RHIVQIYSYH--G-GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDD-- 475 (1101)
Q Consensus 412 --~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~~~~s~d~~~~~l~s~~~d-- 475 (1101)
..+|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|+.++.|
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~ 152 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFT 152 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEEC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEeccc
Confidence 56666 99999 776654 4567777765 3 43 22 2444 677899999999999 56666665
Q ss_pred --------CcEEEEeCCC------CceEEEec-CcccCeEEEeeeecCCccEEEEEecCC--------cEEEEecC-CCC
Q 001318 476 --------KTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDG--------KIKAWLYD-NLG 531 (1101)
Q Consensus 476 --------~~i~iwd~~~------~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg--------~i~~wd~~-~~~ 531 (1101)
..|++||+.+ ++. ..+. .+...+..++| ++||++|+.++.++ .|++||+. ++.
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred CCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5899999988 554 4555 55566666776 56778888877553 79999988 331
Q ss_pred --ceeee-cCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEcCCCCC-
Q 001318 532 --SRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGL- 605 (1101)
Q Consensus 532 --~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~- 605 (1101)
....+ ..+.. .+..+.|+|||+++++++.++ .|++||+.+++.......+...
T Consensus 230 ~~~~~~l~~~~~~---------------------~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 230 FADTRTLLGGPEE---------------------AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp EEEEEEEEEETTB---------------------CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred ccccEEeCCCCCc---------------------eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 21111 11122 344556666667677777777 6777777677654433322211
Q ss_pred -----CCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 606 -----PASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 606 -----~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
..+.+++|+++++++++++. +.++||.+.
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 01467889999999998888 888888543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=170.71 Aligned_cols=239 Identities=12% Similarity=-0.030 Sum_probs=152.6
Q ss_pred CcEEEEEecCCCeEEEEEecCC--cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
.+.+++|||||++|+++...++ .|.+||+.+++... +..++......+.|||||++|+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~ 97 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFY 97 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEE
Confidence 3788999999998655555433 68888998876543 12222223344889999999999
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccccCCeeE-------------------EEEcCCCCeEEEEEe-----cCCCcEEE
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-------------------IAFSHPNKQLCVITC-----GDDKTIKV 480 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------~~~s~d~~~~~l~s~-----~~d~~i~i 480 (1101)
++.++.|.+||+.+++... . ...+...... ++|+|+++. ++.. ..+..|++
T Consensus 98 ~~~~~~l~~~d~~~~~~~~-~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 98 VKNELNLMKVDLETLEEQV-I--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp EETTTEEEEEETTTCCEEE-E--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEE
T ss_pred EEcCCcEEEEECCCCCcEE-E--EecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEE
Confidence 9999999999999887543 1 2223332222 356788774 3332 45678999
Q ss_pred EeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC------CcEEEEecCCCCceeeecCC-CCceeEEEEccCCc
Q 001318 481 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGT 553 (1101)
Q Consensus 481 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~ 553 (1101)
||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+............ ...+..+.
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~------ 244 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF------ 244 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE------
T ss_pred EECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE------
Confidence 999988876554 46667888888541 44556655543 35778887654322211111 11334444
Q ss_pred eEEeccccCceeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeC--
Q 001318 554 RTYQGFRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN-- 625 (1101)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-- 625 (1101)
|+|+|++|+.++.+ +.|++||+.+++......... .. +.|+| ||+++++++.
T Consensus 245 ---------------~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 245 ---------------WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp ---------------ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC
T ss_pred ---------------ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCc
Confidence 45555555555432 449999999887654433221 22 89999 9998887652
Q ss_pred --------------CCcEEEEEecCc
Q 001318 626 --------------DNGIKILATSDG 637 (1101)
Q Consensus 626 --------------dg~i~iw~~~~~ 637 (1101)
++.|++||+.++
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp ----------CCCCCCEEEEEETTTT
T ss_pred ceeeccccccccCCCCcEEEEecccC
Confidence 367888887665
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=178.05 Aligned_cols=333 Identities=9% Similarity=0.003 Sum_probs=198.2
Q ss_pred eccccCCeeEEEEcCCCCeEEEEEe--cCCCcEEEEeCCCCceEEEecCcccCeE---------EEeeeecCCccE-EEE
Q 001318 448 IDAHVGGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATNGAKQYIFEGHEAPVY---------SVCPHHKENIQF-IFS 515 (1101)
Q Consensus 448 l~~h~~~V~~~~~s~d~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~h~~~v~---------~v~~~~~~~~~~-l~s 515 (1101)
+.+|...|..++|+++.- ++++. +.++...||....+.....+..|...+. ...|+.++||+. |+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 567899999999997644 67777 6688999999766666677777766655 455543477777 665
Q ss_pred Eec-CCcEEEEecC--CCCceeeecC-----CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC-----
Q 001318 516 TAL-DGKIKAWLYD--NLGSRVDYEA-----PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD----- 582 (1101)
Q Consensus 516 ~~~-dg~i~~wd~~--~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----- 582 (1101)
++. +..|.+|++. .......+.. +...+. .++|+|||+.|++++.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~---------------------~~~~spDg~~l~~~~~~~~~~~ 155 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA---------------------DPVLLPERGEVWCMAEEFTGEG 155 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE---------------------EEEEETTTTEEEEEEEEECSSS
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc---------------------CcEECCCCCEEEEEEecccCCC
Confidence 543 4556666554 1033333332 222333 45555555677777765
Q ss_pred -----CcEEEEECCC------CceeEEEc-CCCCCCCcCeEEEccCCCEEEEEeCCC--------cEEEEEec-Cccc-c
Q 001318 583 -----FSIKFWDMDS------VQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDN--------GIKILATS-DGIR-L 640 (1101)
Q Consensus 583 -----g~i~iwd~~~------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iw~~~-~~~~-~ 640 (1101)
..|++||+.+ ++.. .+. .+ ...+..++|||||++|+.++.++ .|++||+. ++.. .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCceeEEEEEECCCCccccCCcee-EEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999988 5543 333 22 23577899999999999887553 67888776 3310 0
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
...+.
T Consensus 233 ~~~l~--------------------------------------------------------------------------- 237 (662)
T 3azo_A 233 TRTLL--------------------------------------------------------------------------- 237 (662)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred cEEeC---------------------------------------------------------------------------
Confidence 00000
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
..+...+..+.|+|||+.++++..++...||.+. ..++..... ..
T Consensus 238 --------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~--------------------~~~~~~~~l-~~ 282 (662)
T 3azo_A 238 --------------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD--------------------PATGAATQL-CR 282 (662)
T ss_dssp --------------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC--------------------TTTCCEEES-SC
T ss_pred --------------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEE--------------------CCCCceeec-cc
Confidence 1134567889999999977777667744444332 111211110 00
Q ss_pred CC------CCCCCeeEEEEecCCCEEEEEeCCeEEEE--ECCCCceeeEecCCCCCeEEE-EEecCCCcEEEEEeccC--
Q 001318 801 DS------NPEEAVPCFALSKNDSYVMSASGGKISLF--NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDS-- 869 (1101)
Q Consensus 801 ~~------~~~~~i~~~~~s~dg~~la~~sdg~i~vw--d~~~~~~~~~~~~~~~~i~~l-~~sp~d~~~lasg~~dg-- 869 (1101)
.. .-.-.+..++|++++++++++..+.++|| |..+++ +..+..+...+..+ +++. +.-++++++.+.
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAY 360 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCC
Confidence 00 00111467899999999888876667777 655554 67777777777777 5554 333444445554
Q ss_pred eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 870 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 870 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
.|++||+.+++.......|...+....+++.....+.+..+..|..|-+
T Consensus 361 ~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 361 EVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred EEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 4555566677654443445444444444444444444433445655544
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-10 Score=142.67 Aligned_cols=553 Identities=9% Similarity=0.083 Sum_probs=313.7
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
...|.++...++|. |-.|+.+ -+..||..+++.... ... .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR--VWIGTRD-GLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC--EEEEeCC-chheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEE
Confidence 35799999999998 4445554 489999877653321 000 0000012889999998887664
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccc-cCC-eeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCcccCeEE
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAH-VGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYS 501 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~-V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~ 501 (1101)
. . +.|..||..+++... . ..++ ... |.++...+++. +..++.++.|..||..+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 3 458899987764321 1 0111 123 88898888886 334555556889998777654321 123456777
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
+.. +.++. +..++.++-+..||..+..... +...... +. ......+.++...++|. +..|..
T Consensus 220 i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~-~~~~~~~-------~~------~l~~~~i~~i~~d~~g~-lWigt~ 281 (795)
T 4a2l_A 220 ILQ--QSPTR-IWVATEGAGLFLINPKTKEIKN-YLHSPSN-------PK------SISSNYIRSLAMDSQNR-LWIGTF 281 (795)
T ss_dssp EEE--EETTE-EEEEEBSSCEEEEETTTTEEEE-ECCCTTC-------TT------SCSCSBEEEEEECTTSC-EEEEES
T ss_pred EEE--cCCCC-EEEEECCCCeEEEeCCCCeEEE-eecCCCC-------cc------ccCCCeEEEEEEcCCCC-EEEEeC
Confidence 765 34444 4455544458888876543221 1110000 00 00112344455555555 444555
Q ss_pred CCcEEEEECCCCceeEEEcCC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCC
Q 001318 582 DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 656 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1101)
+ -|.+|+..+++........ -....|.++...++|.+. +|+.++-|..|+..++ . +..+.....
T Consensus 282 ~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~-~-~~~~~~~~~------- 350 (795)
T 4a2l_A 282 N-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRN-R-FKNIRNIPY------- 350 (795)
T ss_dssp S-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGG-S-SEEECCCTT-------
T ss_pred C-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcc-c-ceEEcCCCC-------
Confidence 5 6899998877644332111 012357888888888754 5667777888875443 1 111100000
Q ss_pred CCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccc
Q 001318 657 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 736 (1101)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 736 (1101)
+...
T Consensus 351 ----------------------------------------------------------------------------~~~l 354 (795)
T 4a2l_A 351 ----------------------------------------------------------------------------KNSL 354 (795)
T ss_dssp ----------------------------------------------------------------------------SSSC
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 0000
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
....|.++...++|. |-.++.++-+..|+.....+. .+....+.. ...-....|.+++..++
T Consensus 355 ~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~------------~~~~~~~~~-----~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 355 SDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT------------SYTLQEDES-----ARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp SCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE------------EECCC-----------CCSCSCEEEEEEETT
T ss_pred CCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE------------EEecCCCCc-----ccCCCCccEEEEEEcCC
Confidence 235688888888887 555666666777765322110 000000000 00002456899999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEec----CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec-----
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK----- 886 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~----- 886 (1101)
|+.|.+|+ ++.|.+||..+++...... .....|.++...+ ++++.+ |+. +-+.+||..+++......
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEEECCBCTTCC
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEEEcccccccc
Confidence 98455555 6889999998766433221 1245689999888 676555 444 458889987765443221
Q ss_pred -CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEE
Q 001318 887 -GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 965 (1101)
Q Consensus 887 -~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vw 965 (1101)
-+...|.++...++|.+.+... + -|..|+..++.. ...............|.++..+++|.+.+.+.. .+..|
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~ 567 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI---QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCF 567 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE---EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEE
T ss_pred ccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE---EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeE
Confidence 1236789999999988776554 4 488898876542 111000000111246789999999997766554 78899
Q ss_pred EcCCceeeeeccCCC-CCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeC
Q 001318 966 ETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1044 (1101)
Q Consensus 966 d~~~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~ 1044 (1101)
|..+++....-...+ ....|.++...++|.+.+++ ++-|..||..+++.. .+....-++. .....-++...+
T Consensus 568 d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~~----~~f~~~~~~~~~ 640 (795)
T 4a2l_A 568 NEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQS----NQFNTASYCRTS 640 (795)
T ss_dssp ETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCSC----SCEEEEEEEECT
T ss_pred CCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCcc----ccCccCceeECC
Confidence 988776543211112 14568999999999876654 455778998877654 3332222221 112222455555
Q ss_pred CCCCEEEEEecCCcEEEEeccC
Q 001318 1045 QEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1045 ~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+|. |..|+.+| +..++...
T Consensus 641 -~G~-l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 641 -VGQ-MYFGGING-ITTFRPEL 659 (795)
T ss_dssp -TSC-EEEEETTE-EEEECGGG
T ss_pred -CCe-EEEecCCc-eEEEcHHH
Confidence 555 55566666 56667654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=148.28 Aligned_cols=250 Identities=14% Similarity=0.158 Sum_probs=174.3
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe-cCCCe
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSL 421 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~ 421 (1101)
++-..+.+++++|+|+ ++++.+.++.|.+||.. ++.+..... .....+|...+.+++++ ++|++
T Consensus 27 g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~l 91 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGDI 91 (286)
T ss_dssp TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTEE
T ss_pred CccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCeE
Confidence 3556789999999998 68888889999999987 444332100 00112455678999995 67777
Q ss_pred EEEEEc-CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec--CcccC
Q 001318 422 FGVAYS-RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAP 498 (1101)
Q Consensus 422 las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~ 498 (1101)
+++... ++.|.+|| .+++.+... -..+...+.+++++++|+ ++++...++.|.+||. +++.+..+. ++...
T Consensus 92 ~v~~~~~~~~i~~~d-~~g~~~~~~--~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 165 (286)
T 1q7f_A 92 IVTERSPTHQIQIYN-QYGQFVRKF--GATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEF 165 (286)
T ss_dssp EEEECGGGCEEEEEC-TTSCEEEEE--CTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCSS
T ss_pred EEEcCCCCCEEEEEC-CCCcEEEEe--cCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCC
Confidence 766644 89999999 455544422 123456789999999998 7788888899999994 566666664 34556
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
+..+++ +++|.++++...++.|++||... +....+..... ......++++++|+++++
T Consensus 166 p~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~-------------------~~~p~~i~~d~~G~l~v~ 223 (286)
T 1q7f_A 166 PNGVVV--NDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGI-------------------TNYPIGVGINSNGEILIA 223 (286)
T ss_dssp EEEEEE--CSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTT-------------------SCSEEEEEECTTCCEEEE
T ss_pred cEEEEE--CCCCCEEEEECCCCEEEEEcCCC-CEEEEEccCCc-------------------cCCCcEEEECCCCCEEEE
Confidence 888887 45667778878899999999743 33333322110 013445666677777777
Q ss_pred EeCCC-cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 579 AGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 579 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
...++ .|.+|+. +++.+..+..+.....+.+++++|+|+++++ +.++.|++|+....
T Consensus 224 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 224 DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 77775 9999995 5667777765444334678999999987776 67899999987543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-10 Score=140.08 Aligned_cols=546 Identities=10% Similarity=0.078 Sum_probs=317.1
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
...|+++.-.++|. +-.|+.+| +..||-.+ |+.+...... . ..-....|.+|...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGYA--------FTVYQHNEDD----P--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSSC--------EEEECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCCc--------eEEEeCCCCC----C--CcccccceeEEEECCCCCEEE-
Confidence 45799999999996 55677766 45666432 2222110000 0 001245799999999987665
Q ss_pred EEcCCeEEEEEccCCceeeeeeeecccc----CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc-ccC-
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-EAP- 498 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~----~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~- 498 (1101)
|+.+| +..||..+++... +.... ..|.++...++|. +.+ ++. +.|.+||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44555 8999988764322 21111 1288999888887 444 333 45889998776543211111 123
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec-CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
|.++.. +.++. +..++.++-|..|+..+........ .... .+..+...+++. +.
T Consensus 175 i~~i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~---------------------~i~~i~~d~~g~-lw 229 (795)
T 4a2l_A 175 IASTLY--RQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTK---------------------QIQAILQQSPTR-IW 229 (795)
T ss_dssp CEEEEE--EETTE-EEEEESSSCEEEEETTTCCEEECC----CC---------------------CEEEEEEEETTE-EE
T ss_pred eEEEEE--CCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCC---------------------eeEEEEEcCCCC-EE
Confidence 777765 34444 4446665568888876543221110 0112 333444444444 55
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccccc
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 652 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 652 (1101)
.++.++.|.+||..+++........ -....|.++...++|.+.+ |+.+ -|.+|+..++ ... .+.....
T Consensus 230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~-~~~-~~~~~~~--- 302 (795)
T 4a2l_A 230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTD-SFA-SYSSNPV--- 302 (795)
T ss_dssp EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTT-EEE-EECCCTT---
T ss_pred EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCC-eEE-EEecCCC---
Confidence 5555555899998876544332211 0123578888888887655 4444 5888886654 111 1100000
Q ss_pred ccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccccc
Q 001318 653 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 732 (1101)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 732 (1101)
...
T Consensus 303 -------------------------------------------------------------------------~~~---- 305 (795)
T 4a2l_A 303 -------------------------------------------------------------------------ENG---- 305 (795)
T ss_dssp -------------------------------------------------------------------------STT----
T ss_pred -------------------------------------------------------------------------CCC----
Confidence 000
Q ss_pred CccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEE
Q 001318 733 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 812 (1101)
Q Consensus 733 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~ 812 (1101)
......|.++...++|. |-.++.++-+..|+.....+. .+..... ...-....|.+++
T Consensus 306 --~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~~~~-------~~~l~~~~V~~i~ 363 (795)
T 4a2l_A 306 --SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK------------NIRNIPY-------KNSLSDNVVSCIV 363 (795)
T ss_dssp --SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE------------EECCCTT-------SSSCSCSSEEEEE
T ss_pred --CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce------------EEcCCCC-------CCCCCCCeeEEEE
Confidence 01345788999999988 555666666676765332210 0000000 0001345699999
Q ss_pred EecCCCEEEEEeCCeEEEEECCCCceeeEecC--------CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 813 LSKNDSYVMSASGGKISLFNMMTFKTMATFMP--------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 813 ~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~--------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
..++|.+.+...++.|..||..+++....... ....|.+++..+ ++++|.+|+.++-|.+||..+++....
T Consensus 364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 99998866644477899999887654332211 235689999988 777566688877899999887664332
Q ss_pred ec----CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC
Q 001318 885 LK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 960 (1101)
Q Consensus 885 l~----~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 960 (1101)
.. .+...|.++...++|.+.+... +| +.+|+..+++....... ..........|.++...++|...+.+. +
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d~~g~lWigt~-~ 517 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRDSHKRLWIGGE-E 517 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEECTTCCEEEEES-S
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEcccc--ccccccCCceEEEEEECCCCCEEEEeC-C
Confidence 21 2345799999988888666554 44 89999877543211100 000011124688999999999877766 6
Q ss_pred eEEEEEcCCceeeeeccC-----CCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCc
Q 001318 961 QLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1035 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~-----~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1035 (1101)
.|..||..+++. . +.. ......|.++...++|++.++. .. -|..||..+++... +....-++. ..+
T Consensus 518 Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~-~~~~~gl~~----~~i 588 (795)
T 4a2l_A 518 GLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKR-YNTTNGLPN----NVV 588 (795)
T ss_dssp CEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEE-ECGGGTCSC----SCE
T ss_pred ceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEE-eCCCCCCch----hhe
Confidence 788999887765 2 210 0124579999999999876644 34 58889988776543 332222322 224
Q ss_pred cceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1036 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1036 ~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
. ++...+ +|++.+++ ++.|..|+..+++
T Consensus 589 ~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 589 Y--GILEDS-FGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp E--EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred E--EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence 4 666666 56655554 4567778876654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-13 Score=153.83 Aligned_cols=220 Identities=10% Similarity=0.089 Sum_probs=152.9
Q ss_pred CeeEEEEecCCCEEEEEe-C---Ce--EEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec-------------
Q 001318 807 AVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD------------- 867 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s-d---g~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~------------- 867 (1101)
.+..++|||||++|+..+ + +. |++||+.+++.......+ . +..++|+| |++.|+.++.
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 477899999999999876 3 33 888899887765544433 3 99999999 8888887764
Q ss_pred --------------cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC-------ceEEEeCCCcccccc
Q 001318 868 --------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKN 926 (1101)
Q Consensus 868 --------------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~-------~v~iwd~~~~~~~~~ 926 (1101)
...|++||+.+++.+..+.. . .+..++|+||| +++++..+. ...||.+++++.
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--- 210 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--- 210 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---
Confidence 25799999988887455554 3 78999999999 877776542 445665554332
Q ss_pred eeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeC--------CeEEEEEcCCceeeeeccCCCCCCCeeE-EEEcCCCCE
Q 001318 927 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQL 996 (1101)
Q Consensus 927 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d--------~~v~vwd~~~~~~~~~~~~~~h~~~i~~-l~~spdg~~ 996 (1101)
..+. .+ ..+.. ++|||++|+. +.+ ..|.+|| +++..... .+|...+.. +.|+ || +
T Consensus 211 ~~l~--~~-----~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~--~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 211 EKMF--EK-----VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL--DEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp EEEE--EE-----ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS--TTCCSEEEEEEEET-TE-E
T ss_pred EEec--cC-----cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc--ccCCcccCCccEEc-Cc-E
Confidence 1111 11 12333 3999998887 433 3688888 55544333 255677886 9999 98 9
Q ss_pred EEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcE-EEEecc
Q 001318 997 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV-HVFEPL 1065 (1101)
Q Consensus 997 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v-~vW~~~ 1065 (1101)
+++++.++.++|| +.+++....+. + ...+. .++|+| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~-------~--~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAK-------G--RHWIM--GFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEEC-------S--SSEEE--EEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEec-------C--CCeEE--eeeeeC---cEEEEEcCCCChHHheEeC
Confidence 9999999999999 88766543322 1 12244 788887 577777777765 788776
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.4e-13 Score=143.05 Aligned_cols=242 Identities=10% Similarity=0.073 Sum_probs=167.8
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+..+.....+++|+|+|+.+++++..++.|..||..++ .. .+..+...+.+++|+|+|+
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~-------------------~~~~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS-------------------PEMHPSHHQNGHCLNKQGH 81 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-------------------EEESSCSSEEEEEECTTCC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-------------------EEECCCCCcceeeECCCCc
Confidence 34566778999999999977899999999999999887 22 1334567899999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCeEEEEE----ec-------------CCCcEEEEe
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVIT----CG-------------DDKTIKVWD 482 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s----~~-------------~d~~i~iwd 482 (1101)
++++...++.|.+||..+++.........+ ....+..++++|+|+ ++++ |+ ..+.|..++
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEEC
Confidence 888877789999999988764332111111 123578899999998 6776 33 134566666
Q ss_pred CCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCce----eeecCCCCceeEEEEccCCceEEec
Q 001318 483 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 483 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
.. ++ +..+..+......++| +++++.+++.+.++.|.+|++...... ..+...
T Consensus 160 ~~-g~-~~~~~~~~~~~~gi~~--s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~------------------- 216 (296)
T 3e5z_A 160 PD-GT-LSAPIRDRVKPNGLAF--LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE------------------- 216 (296)
T ss_dssp TT-SC-EEEEECCCSSEEEEEE--CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS-------------------
T ss_pred CC-CC-EEEeecCCCCCccEEE--CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC-------------------
Confidence 54 44 3445556667788888 456677777788899999998732221 111111
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEE-ccCCCEEEEEeCCCcEEEEEecCc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
......++++++|++.++. ++.|.+|+.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 217 --~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 217 --PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp --SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred --CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 1123346677777755555 8899999986 777777765433 788999 5899999998875 3444454443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-13 Score=148.26 Aligned_cols=274 Identities=12% Similarity=0.086 Sum_probs=182.0
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..|.+++|++++..++..+.++.++.|.-. ... .+. .+...+.+++|+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~-~~~--~~~~~~~~~~~~~~g~ 57 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWL-EIS--KKGLQLEGLNFDRQGQ 57 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEE-EEE--SSCCCEEEEEECTTSC
T ss_pred cccceeeecCCccceeEEeecccCcccccc-------------------------eeE-EEe--ccCccccCcEECCCCC
Confidence 456677888888877777777777776210 000 011 1445678999999999
Q ss_pred EEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc----CeEEEEEeecceEeeeec--CcccC
Q 001318 819 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEVKSKLK--GHSKR 891 (1101)
Q Consensus 819 ~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~~~~~l~--~h~~~ 891 (1101)
+++++. ++.|.+||..+++.......+...+.++++++ +++++++...+ +.|++||..++.....+. .+...
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC 136 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence 777777 78999999988876655545667899999999 88888877666 689999988766443332 24467
Q ss_pred eeEEEEcCCCCEEEEEeC------CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEE
Q 001318 892 ITGLAFSHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 963 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~ 963 (1101)
+.+++++|+|+++++... .+.|..|+.++++... ..... ..+..++|+|+|+.++++ .++.|.
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRLH 207 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeEE
Confidence 899999999998887654 2445555555433211 11111 245789999999876653 468999
Q ss_pred EEEcCC-ceeeee-----c-cCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCcc
Q 001318 964 IFETTK-LECVKQ-----W-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1036 (1101)
Q Consensus 964 vwd~~~-~~~~~~-----~-~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1036 (1101)
+||+.+ +..+.. . ...++ ..+..++++++|+++++...++.|.+||. +++.+..+..... ..++ ...
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~---~~~ 281 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH---MLR 281 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC---SCB
T ss_pred EEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc---ccC
Confidence 999964 332211 1 11122 46788999999998888878899999998 5666665541110 0011 012
Q ss_pred ceEEEEeCCCCCEEEEEecCC
Q 001318 1037 PLVIAAHPQEPNEFALGLSDG 1057 (1101)
Q Consensus 1037 ~~~i~~~~~d~~~l~s~~~dg 1057 (1101)
+..++|+| |++.|+.++.++
T Consensus 282 ~~~~~~~~-dg~~L~v~~~~g 301 (333)
T 2dg1_A 282 STHPQFIP-GTNQLIICSNDI 301 (333)
T ss_dssp CCEEEECT-TSCEEEEEEECG
T ss_pred cceEEECC-CCCEEEEEeCcc
Confidence 44899988 566666555553
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-12 Score=142.99 Aligned_cols=204 Identities=11% Similarity=0.082 Sum_probs=141.6
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-ceEee
Q 001318 808 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS 883 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~ 883 (1101)
...++|+|||++++++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||.+.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 45688899999888775 4789999999999998886322 1 233433 666777888899998888876 55432
Q ss_pred eecCc----ccCee-EEEEc-CCCCEEEEEeCCCceEEEeCCCcccccceeeecC------CCCCCCCCCCeEEEEcCCC
Q 001318 884 KLKGH----SKRIT-GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 884 ~l~~h----~~~V~-~l~~s-~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~dg 951 (1101)
....+ ..++. ...|. ++|++++ .+.+++|.+.|+.+........+..+ .+-. ......+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~--p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR--PGGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE--ECSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc--CCCcceeeECCCC
Confidence 21111 12222 24664 6776555 55689999999977542221112111 1110 1244568889999
Q ss_pred cEEEEE-e----------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC-EEEEEE-cCCeEEEEEcCCceeee
Q 001318 952 IHFLVV-H----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRC 1018 (1101)
Q Consensus 952 ~~la~~-~----------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s~s-~dg~v~vwd~~~~~~~~ 1018 (1101)
+.+.+. . .+.|.++|+.+++.+..+.. ...+.+|+|++|++ +|+++. .++.|.|+|..+++.+.
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 998884 2 14799999999999998875 34788999999997 666654 48999999999999999
Q ss_pred ecC
Q 001318 1019 RIN 1021 (1101)
Q Consensus 1019 ~~~ 1021 (1101)
++.
T Consensus 369 ~i~ 371 (386)
T 3sjl_D 369 SVN 371 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 887
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-13 Score=149.87 Aligned_cols=222 Identities=12% Similarity=0.120 Sum_probs=145.1
Q ss_pred CCcEEEEEecCCCeEEEEEe--------cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 346 SSPMSMDFHPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
..+..++| ||++++.+.. .++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 45677888 9997555432 25679999998876432 2 4688999999
Q ss_pred CCCeEEEEEcC---C--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC------------------
Q 001318 418 DGSLFGVAYSR---H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------------------ 474 (1101)
Q Consensus 418 dg~~las~~~d---~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~------------------ 474 (1101)
||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 47888888876443 222333 999999999995 444432
Q ss_pred ---------CCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCC-------cEEEEecCCCCceeeecC
Q 001318 475 ---------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-------KIKAWLYDNLGSRVDYEA 538 (1101)
Q Consensus 475 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg-------~i~~wd~~~~~~~~~~~~ 538 (1101)
...|++||+.+++.+..+.. . .+..++|+ ++| +++++..++ ...+|.+++ .....+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWED-GKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEET-TEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeCC-CceEEecc
Confidence 25799999999887555554 3 67778874 666 777776542 445555442 22211111
Q ss_pred CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEEcCCCCCCCcCe
Q 001318 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD--------FSIKFWDMDSVQLLTSIDADGGLPASPR 610 (1101)
Q Consensus 539 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 610 (1101)
+ ..+. .++|+|++|+.++.+ ..|++|| +++....... +...+..
T Consensus 216 ~----------------------~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~--~~~~~~~ 267 (347)
T 2gop_A 216 K----------------------VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE--VDRGVGQ 267 (347)
T ss_dssp E----------------------ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT--CCSEEEE
T ss_pred C----------------------ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc--CCcccCC
Confidence 1 1111 226777777776643 4688888 5554333332 2234665
Q ss_pred -EEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 611 -IRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 611 -~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+.|+ ++ ++++++.++.+++| +.++
T Consensus 268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 268 AKIKD-GK-VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp EEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred ccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence 8899 88 88899999999999 8643
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.6e-13 Score=145.78 Aligned_cols=239 Identities=11% Similarity=0.122 Sum_probs=171.6
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 806 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
.....+++. +++.+++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 445677774 344444444 6999999999999988885 346789999998 776555554789999999999988777
Q ss_pred ecCcc-----cCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-
Q 001318 885 LKGHS-----KRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV- 957 (1101)
Q Consensus 885 l~~h~-----~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~- 957 (1101)
+.... .....+++ .+++.+++.. .+++|.+||+.+++.... +.. + .....++++|+|++++++
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~--i~~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE--LTI--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE--EEC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE--EEc--C-----CCccceEEcCCCCEEEEEC
Confidence 65433 14567778 3444444443 488999999998764322 111 1 134678999999987774
Q ss_pred eC----------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccC
Q 001318 958 HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1027 (1101)
Q Consensus 958 ~d----------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 1027 (1101)
.+ +.|.++|..+++....+.... ...+..++|+||+++|+++.. .|.+||..+++.... . +.+
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~-~---~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR-P---FLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS-C---SBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee-e---eec
Confidence 33 689999999998877765321 347899999999999887754 899999999886421 1 111
Q ss_pred CCCCCCCccceEEEEeCCCCCEEEEE----ecCCcEEEEeccCCCc
Q 001318 1028 AGVSSSNVHPLVIAAHPQEPNEFALG----LSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1028 ~~~~~~~v~~~~i~~~~~d~~~l~s~----~~dg~v~vW~~~~~~~ 1069 (1101)
.+ .-.+-.++++|+++++.++. ..++.|.+|+.. ++-
T Consensus 264 ~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~ 304 (328)
T 3dsm_A 264 FR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL 304 (328)
T ss_dssp CC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred CC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence 11 12355899999777777887 678999999997 763
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-13 Score=142.61 Aligned_cols=253 Identities=11% Similarity=0.049 Sum_probs=184.6
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcc-cCe
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRI 892 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V 892 (1101)
.++.|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++|+ +.++.|+.||. +++.+.++..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456788887 8999999999999999998776 4789999999 899888 45788999998 899888887653 468
Q ss_pred eEEEEcCCCCEEEEEeC-CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCc
Q 001318 893 TGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL 970 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~ 970 (1101)
.++.+.+||++|++.+. ++.|..+|.+ ++......+. .+..........+++.++|.++++. .++.|..||.+ |
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~--~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFE--TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEEC--CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEecc--CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 89999999999999887 6777777763 3322221111 1100001234566889999999985 78999999998 9
Q ss_pred eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001318 971 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1050 (1101)
Q Consensus 971 ~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l 1050 (1101)
+.+..+.. ...+.++.+.++|.++++++.++.|..+|..+|+.+.++.... .+ + .....+..++..+ +|+++
T Consensus 156 ~~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~-~--~~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 156 QLLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IE-G--VQLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp CEEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SB-S--CCCSEEEEEEECT-TSCEE
T ss_pred CEEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CC-C--ccccccccceEcC-CCCEE
Confidence 98888764 2456778889999999999888899999999999998876211 11 1 0113345777777 67777
Q ss_pred EEEe--cC------CcEEEEec-cCCCccccCCCCCCCCCCCC
Q 001318 1051 ALGL--SD------GGVHVFEP-LESEGKWGVPPPVDNGSTSS 1084 (1101)
Q Consensus 1051 ~s~~--~d------g~v~vW~~-~~~~~~~~~~~~~~~~~~~~ 1084 (1101)
++.. .. +..++.++ .+++-.|......+-|.+++
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 7763 11 23456666 57777888776666666554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-11 Score=134.51 Aligned_cols=280 Identities=11% Similarity=0.115 Sum_probs=191.1
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
....+.+++++++|+.+++...++.|.+|+.. +......... ....+.+++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--PDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--ccCceeeEEECCC
Confidence 44678999999999977766667888888752 1111111111 3456889999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEe--cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee-ecCcccCe
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRI 892 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V 892 (1101)
|.++++.. ++.|..||.. ++. ..+ ......+..+++++ +++++++...++.|.+||. +++.... +..+...+
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 99888776 7889999986 332 222 23455789999999 8888887777889999998 5544322 23345678
Q ss_pred eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCce
Q 001318 893 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLE 971 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~ 971 (1101)
.++++.++|++.++...++.|..||. +++... ...... ...+..++++++|+++++. .++.|.+||. +++
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTP----ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSST----TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCC----CCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 99999999988888777788999998 544221 111111 1356899999999977665 5789999999 665
Q ss_pred eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001318 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1051 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~ 1051 (1101)
... +....+...+.+++++++|+++++...++.|.+||. +++.. .+. .+.+ . -.+.++++ + ++.+.+
T Consensus 215 ~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~~~--~--~~~~~i~~-~-~g~l~v 281 (299)
T 2z2n_A 215 ITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQIK--S--AEPHGICF-D-GETIWF 281 (299)
T ss_dssp EEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CSSS--S--CCEEEEEE-C-SSCEEE
T ss_pred EEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CCCC--C--CccceEEe-c-CCCEEE
Confidence 433 322334568999999999997776657889999998 45433 332 1111 1 12347777 5 667666
Q ss_pred EEecCCcEEEEeccCCC
Q 001318 1052 LGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1052 s~~~dg~v~vW~~~~~~ 1068 (1101)
+.. .+.+..++..+++
T Consensus 282 ~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 282 AME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EET-TTEEEEEEEC---
T ss_pred Eec-CCcEEEEEcCccc
Confidence 655 6778888876643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-11 Score=136.94 Aligned_cols=204 Identities=9% Similarity=0.005 Sum_probs=141.0
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 808 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
...++++|||++|+++. ++.|.++| .+++.+.+ +.... ++.+.|.+.+.+++.+.||.+.++|. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34688999999888875 36799999 99988877 65322 24556645567777888999999999 877663
Q ss_pred eec-----CcccC-eeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCC----CCCCCCCCeEEEEcCCCcE
Q 001318 884 KLK-----GHSKR-ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 884 ~l~-----~h~~~-V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~ 953 (1101)
... ....+ .....+.+++..++..+.++.+.+.|+.+........+..... ..........++++||++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 321 11122 2335677776665555578889999997643221111111110 0000123345889999998
Q ss_pred EEEEe-----------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC-EEEEEE-cCCeEEEEEcCCceeeeec
Q 001318 954 FLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 954 la~~~-----------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s~s-~dg~v~vwd~~~~~~~~~~ 1020 (1101)
+.+.. .+.|.++|+.+++.+..+.. .....+++|+|||+ +|+++. .++.|.|||+.+++.+.++
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 88742 25799999999999988864 33689999999999 777777 5899999999999999874
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.5e-13 Score=163.65 Aligned_cols=249 Identities=10% Similarity=-0.005 Sum_probs=165.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCC----cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
|...+..++|||||++|+.+.+.+| .|++||+.+++.+.. .+. ...+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~--~~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLE--RVKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEE--EECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------ccc--CcccceEEEEeCC
Confidence 4456889999999997555544444 899999999987542 011 1136789999999
Q ss_pred CeEEEEEcCCe----------------EEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCeEEEEEecC-----CCc
Q 001318 420 SLFGVAYSRHI----------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKT 477 (1101)
Q Consensus 420 ~~las~~~d~~----------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-----d~~ 477 (1101)
+.|+.++.++. |++|++.+++.. ........|...+..++|||||+. |+..+. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988766 999999887632 112122335666889999999995 443332 678
Q ss_pred EEEEeCCC------Cc-eEEEecCcccCeEEEeeeecCCccEEEEEecC----CcEEEEecCCCCc--eeeecCCCCcee
Q 001318 478 IKVWDATN------GA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGS--RVDYEAPGRWCT 544 (1101)
Q Consensus 478 i~iwd~~~------~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~--~~~~~~~~~~v~ 544 (1101)
|++||+.+ +. ....+..+...+... |++ +|..|+..+.+ +.|.+||+.+... ...+..+..
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--- 334 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE--- 334 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC---
Confidence 99999987 53 456666666666543 544 44555555442 3689999877542 122222211
Q ss_pred EEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCc--EEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEE
Q 001318 545 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 622 (1101)
Q Consensus 545 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 622 (1101)
...+..+.+++++.++++...++. |++|++.+++.+..+..+ ...+..++++|+++.++.
T Consensus 335 ----------------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~ 396 (710)
T 2xdw_A 335 ----------------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFY 396 (710)
T ss_dssp ----------------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEE
T ss_pred ----------------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEE
Confidence 012333444444456777777874 666787778877777655 335778889999887664
Q ss_pred Ee----CCCcEEEEEecCcc
Q 001318 623 ST----NDNGIKILATSDGI 638 (1101)
Q Consensus 623 ~~----~dg~i~iw~~~~~~ 638 (1101)
.. ..++|+.||+.++.
T Consensus 397 ~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECSSCCCEEEEEETTSSS
T ss_pred EEeCCCCCCEEEEEECCCCc
Confidence 43 24789999998773
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-12 Score=157.19 Aligned_cols=245 Identities=9% Similarity=0.038 Sum_probs=169.0
Q ss_pred cccceEEEEEcCCCceEEeeecCc-----eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 737 RATKISRLIFTNSGNAILALASNA-----IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
+...+..++|||||++|+.+..++ .|++||+. +|......+ ....+..+
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~----------------------tg~~~~~~~----~~~~~~~~ 176 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD----------------------GAKELPDVL----ERVKFSCM 176 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT----------------------TTEEEEEEE----EEECSCCE
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC----------------------CCCCCcccc----cCcccceE
Confidence 444688999999999988776643 78877763 333322111 11225679
Q ss_pred EEecCCCEEEEEe-CCe----------------EEEEECCCCcee--eEec--CCCCCeEEEEEecCCCcEEEEEec---
Q 001318 812 ALSKNDSYVMSAS-GGK----------------ISLFNMMTFKTM--ATFM--PPPPAATFLAFHPQDNNIIAIGMD--- 867 (1101)
Q Consensus 812 ~~s~dg~~la~~s-dg~----------------i~vwd~~~~~~~--~~~~--~~~~~i~~l~~sp~d~~~lasg~~--- 867 (1101)
+|+|||+.|+.++ ++. |++|++.+++.. ..+. .+...+..++||| |+++|+.++.
T Consensus 177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~ 255 (710)
T 2xdw_A 177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGC 255 (710)
T ss_dssp EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSS
T ss_pred EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccC
Confidence 9999999999887 544 999999887632 2223 2455678999999 8888888765
Q ss_pred --cCeEEEEEeec------ce-EeeeecCcccCeeEEEEcCCCCEEEEEeCCC----ceEEEeCCCcccccceeeecCCC
Q 001318 868 --DSSIQIYNVRV------DE-VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTG 934 (1101)
Q Consensus 868 --dg~v~vwd~~~------~~-~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~ 934 (1101)
+..|++||+.+ +. ....+..+...+.. .|++||+.|+..+.++ .|.+||+.++.......+. ..
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--~~ 332 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--PE 332 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CC
T ss_pred CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--CC
Confidence 56899999987 43 35666667666655 5889998887766533 5999999876421112221 11
Q ss_pred CCCCCCCCeEEEEcCCCcEEEE-EeCC--eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE----cCCeEE
Q 001318 935 RTPTAQSDTRVQFHQDQIHFLV-VHET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF----LDATVC 1007 (1101)
Q Consensus 935 ~~~~~~~v~~~~~s~dg~~la~-~~d~--~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s----~dg~v~ 1007 (1101)
... ..+..++|++++.++++ ..++ .|.+|++.+++.+..+. .+...+..++++||+..|+... ..++|+
T Consensus 333 ~~~--~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 408 (710)
T 2xdw_A 333 HEK--DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP--LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIY 408 (710)
T ss_dssp CSS--CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--CCSSEEEEEECCTTCSEEEEEEECSSCCCEEE
T ss_pred CCC--CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--CCCceEEEEecCCCCCEEEEEEeCCCCCCEEE
Confidence 110 24678889877777777 4666 46778887777666655 3467889999999998666332 347899
Q ss_pred EEEcCCce
Q 001318 1008 VFSAANLK 1015 (1101)
Q Consensus 1008 vwd~~~~~ 1015 (1101)
+||+.+++
T Consensus 409 ~~d~~tg~ 416 (710)
T 2xdw_A 409 HCDLTKEE 416 (710)
T ss_dssp EEETTSSS
T ss_pred EEECCCCc
Confidence 99999887
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=143.43 Aligned_cols=273 Identities=10% Similarity=0.020 Sum_probs=184.2
Q ss_pred CCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCcccc
Q 001318 709 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 788 (1101)
Q Consensus 709 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~ 788 (1101)
.++.|.++|..+.+......... ...........+.+. +++..++...++.|.+||..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~-n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~-------------------- 72 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRA-NGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN-------------------- 72 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHH-HSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT--------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhh-cCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc--------------------
Confidence 46889999987644322111000 001112345667774 34555555567889888763
Q ss_pred CCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCC-----CCeEEEEEecCCCcEE
Q 001318 789 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNII 862 (1101)
Q Consensus 789 ~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~l 862 (1101)
+++.+... . ....+..++++++++.+++.. ++.|.+||..+++....+.... .....+++ . +++++
T Consensus 73 --t~~~~~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 73 --TFKEVGRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp --TCCEEEEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred --ccEEEEEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 33332221 1 245688999999996555553 7999999999998877765332 14566777 4 66666
Q ss_pred EEEe-ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCC----------CceEEEeCCCcccccceeeec
Q 001318 863 AIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----------SQLCVWSSDGWEKQKNRFLQI 931 (1101)
Q Consensus 863 asg~-~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D----------~~v~iwd~~~~~~~~~~~~~~ 931 (1101)
++.. .++.|.+||..+++.+..+.... ....++++++|++++++..+ +.|.+||..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 6654 48899999999998888776433 35789999999988877655 789999998865432 2222
Q ss_pred CCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCC-CCEEEEE----EcCCeE
Q 001318 932 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-SQLVYAC----FLDATV 1006 (1101)
Q Consensus 932 ~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spd-g~~l~s~----s~dg~v 1006 (1101)
..+ .....++|+|++++|.++.. .|.+||..+++.........+......++++|+ +.++++. ..++.|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 24689999999999888654 999999998876432221122467899999995 5555555 568899
Q ss_pred EEEEcCCceeeeecC
Q 001318 1007 CVFSAANLKLRCRIN 1021 (1101)
Q Consensus 1007 ~vwd~~~~~~~~~~~ 1021 (1101)
.+||.. |+.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 99888776
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-12 Score=141.00 Aligned_cols=234 Identities=8% Similarity=-0.043 Sum_probs=161.5
Q ss_pred CCCCeeEEEEecCCC-EEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE
Q 001318 804 PEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 881 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 881 (1101)
+.....+++|+|+|+ +++++. ++.|..||..++ ...+..+...+.++++++ +++++++...++.|.+||..+++.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcE
Confidence 345678999999999 566666 799999999876 666766777899999999 888888777778999999977765
Q ss_pred eeeecCc----ccCeeEEEEcCCCCEEEEEeCC---------------CceEEEeCCC-cccccceeeecCCCCCCCCCC
Q 001318 882 KSKLKGH----SKRITGLAFSHALNVLVSSGAD---------------SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQS 941 (1101)
Q Consensus 882 ~~~l~~h----~~~V~~l~~s~dg~~l~s~s~D---------------~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 941 (1101)
....... ...+.+++++|+|+++++.+.. +.-.||.+.. ++. .. ... .. ..
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~---~~--~~~-~~---~~ 173 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL---SA--PIR-DR---VK 173 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE---EE--EEC-CC---SS
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCE---EE--eec-CC---CC
Confidence 4333221 2356789999999999873211 1124554443 221 11 111 11 24
Q ss_pred CeEEEEcCCCcEEEEE-eCCeEEEEEcC-Ccee---eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 942 DTRVQFHQDQIHFLVV-HETQLAIFETT-KLEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 942 v~~~~~s~dg~~la~~-~d~~v~vwd~~-~~~~---~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
...++|+|||+.+++. .++.|.+|++. ++.. ...+ ..+...+.+++++++|+++++. ++.|.+||.. ++.
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE 248 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence 5789999999998554 56899999987 4544 2333 2356678899999999976655 8899999986 777
Q ss_pred eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1017 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+..+. .+.+ +.+++|...|++.|++++.++ +.-++..+
T Consensus 249 ~~~~~----~~~~-------~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 249 LGRVL----TPQT-------TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp EEEEE----CSSC-------CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred EEEEE----CCCC-------ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 76665 2211 337889533677888877653 44444443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-12 Score=141.09 Aligned_cols=268 Identities=10% Similarity=0.051 Sum_probs=174.8
Q ss_pred cccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCC
Q 001318 695 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 774 (1101)
Q Consensus 695 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 774 (1101)
+.+.++...++....++.++.|.-.. ...+ ..+...+.+++|+++|+.+++...++.|.+|+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~------ 74 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTITAEP------WLEI----SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE------ 74 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEEECEE------EEEE----ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT------
T ss_pred eeecCCccceeEEeecccCcccccce------eEEE----eccCccccCcEECCCCCEEEEECCCCEEEEEeCC------
Confidence 34455566666667778888883221 1111 1144567899999999977777788889888763
Q ss_pred CCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-C----CeEEEEECCCCceeeEec--CCCC
Q 001318 775 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G----GKISLFNMMTFKTMATFM--PPPP 847 (1101)
Q Consensus 775 ~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-d----g~i~vwd~~~~~~~~~~~--~~~~ 847 (1101)
++....... .+...+.+++++++|+++++.. + +.|.+||..++.....+. .+..
T Consensus 75 ----------------~~~~~~~~~---~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 75 ----------------TKEIKRPFV---SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp ----------------TCCEEEEEE---CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred ----------------CCcEEEEee---CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 222211110 1356799999999999888776 4 589999998876543433 2345
Q ss_pred CeEEEEEecCCCcEEEEEec------cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE-EEeCCCceEEEeCCC
Q 001318 848 AATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDG 920 (1101)
Q Consensus 848 ~i~~l~~sp~d~~~lasg~~------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~-s~s~D~~v~iwd~~~ 920 (1101)
.+..++++| +++++++... .+.|+.||..+++... +..+...+.+++|+|||++|+ +.+.++.|.+|++.+
T Consensus 136 ~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 136 CIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 789999999 7887776553 3556666655444332 323344578999999998664 455678999999864
Q ss_pred -cccccc---eeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCC----CCCCCeeEEEEc
Q 001318 921 -WEKQKN---RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR----ESSAPITHATFS 991 (1101)
Q Consensus 921 -~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~----~h~~~i~~l~~s 991 (1101)
+..... .......++ ..+..++++++|+++++. .++.|.+||.. ++.+..+... +|...+.+++|+
T Consensus 214 ~g~~~~~~~~~~~~~~~~~----~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 214 DGVTIQPFGATIPYYFTGH----EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp TSSSEEEEEEEEEEECCSS----SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred CCcCcccccceEEEecCCC----CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEEC
Confidence 221110 111111111 256789999999987774 57899999984 6655555422 122368999999
Q ss_pred CCCCEEEEEEcCC
Q 001318 992 CDSQLVYACFLDA 1004 (1101)
Q Consensus 992 pdg~~l~s~s~dg 1004 (1101)
||++.|+.++.++
T Consensus 289 ~dg~~L~v~~~~g 301 (333)
T 2dg1_A 289 PGTNQLIICSNDI 301 (333)
T ss_dssp TTSCEEEEEEECG
T ss_pred CCCCEEEEEeCcc
Confidence 9988777666553
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-08 Score=123.52 Aligned_cols=609 Identities=11% Similarity=0.095 Sum_probs=323.5
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
...|+++.-..+|. |-.|+.+| +..||-.+ |+.+..... .. . ...-....|.+|...++|..|-.
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~-~~-~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEEQ-SS-S--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCSS-CS-S--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCCC-CC-c--cccccccccceEEEcCCCCEEEE
Confidence 46799999999996 66667766 56677443 222211000 00 0 00011346999999988884556
Q ss_pred EEcCCeEEEEEccCCceeeeeee-ecc---ccCCeeEEEEcC--CCCeEEEEEecCCCcEEEEeCCCCceEEEec-----
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLE-IDA---HVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQYIFE----- 493 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~-l~~---h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----- 493 (1101)
|+.++-+..||..+++....... ... ....|.++.... ++. |..++.++.|..+|..+++......
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77775699999987653221000 000 123688888877 665 4445545568899987766543211
Q ss_pred CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCC
Q 001318 494 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573 (1101)
Q Consensus 494 ~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1101)
.....|.++.. +.++ .|..++.++-|..||..+..... +..... .. .......+..+...+++
T Consensus 160 l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~-~~~~~~----------~~---~~l~~~~i~~i~~d~~g 222 (781)
T 3v9f_A 160 LPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVKH-FVHDPQ----------NP---NSLPGNDVRCIYKDTNG 222 (781)
T ss_dssp CSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEE-ECC---------------------CCSSEEEEEECTTC
T ss_pred CCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceEe-eecCCC----------Cc---ccCCCCceeEEEEcCCC
Confidence 11245776664 3444 45556666568888876533211 110000 00 00011234455555555
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccc
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 648 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 648 (1101)
.+. .+..+ -+.+||..+++........ -....|.++...++|.+. +|+..+-|.+++..++ .... +....
T Consensus 223 ~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~~~~-~~~~~ 297 (781)
T 3v9f_A 223 NIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQN-QFLL-PEQIR 297 (781)
T ss_dssp CEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC-----------
T ss_pred CEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCC-eeee-eeccc
Confidence 544 44444 6899998776543222111 112357888888877654 5666567888887665 2111 10000
Q ss_pred ccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccc
Q 001318 649 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 728 (1101)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 728 (1101)
........... .+.. .....+.... ...+-.|..++.+..++..... +.
T Consensus 298 f~~~~~~~~~~-~l~~-------------------------~~v~~i~~D~-~g~lWigt~~~Gl~~~~~~~~~----~~ 346 (781)
T 3v9f_A 298 FEFIREGDNNY-SLSN-------------------------ASARYIFQDS-FNNIWIGTWGGGINFISNAPPT----FH 346 (781)
T ss_dssp CEEECBCSSTT-SBSS-------------------------SCEEEEEECS-SCCEEEEEBSSCEEEECSSCCS----CE
T ss_pred cccccCCCCCC-CCCC-------------------------CeEEEEEEeC-CCCEEEEecCCeEEEeCCCCCc----ce
Confidence 00000000000 0000 0000001111 2234445545666666654321 11
Q ss_pred cccc------CccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCC
Q 001318 729 SLRL------PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 802 (1101)
Q Consensus 729 ~~~~------~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~ 802 (1101)
.+.. +.......|.++...++|. |..++.++-+..|+.....+. .+. . ...
T Consensus 347 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~-~---------~~~ 403 (781)
T 3v9f_A 347 TWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI------------YNK-E---------NRE 403 (781)
T ss_dssp EEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE------------CC---------------
T ss_pred eeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE------------Ecc-C---------CCC
Confidence 1110 1111346789999998887 555565555666765322110 000 0 000
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEec--CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 803 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
.....|.+++..++|.+.+...++.|..+|..+++...... .....|.++...+ ++++.+ |+. +-|..||..+++
T Consensus 404 ~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 404 LLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKK 480 (781)
T ss_dssp CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSS
T ss_pred CCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCe
Confidence 13567899999888887664446789999987765432221 1345789998887 666554 555 568889987765
Q ss_pred EeeeecCc-----ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 881 VKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 881 ~~~~l~~h-----~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
........ ...|.++...++|.+.+....+| |..||..+++... .....+ .....|.++...++|.+.+
T Consensus 481 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~~--l~~~~i~~i~~d~~g~lWi 554 (781)
T 3v9f_A 481 VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYEG--FCSNTINQIYRSSKGQMWL 554 (781)
T ss_dssp CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTTT--CSCSCEEEEEECTTSCEEE
T ss_pred EEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCCC--CCCCeeEEEEECCCCCEEE
Confidence 43322111 46789999998888766544344 8888887643211 111111 1225688999999999777
Q ss_pred EEeCCeEEEEEcCCceeeeeccCCC-CCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCC
Q 001318 956 VVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1034 (1101)
Q Consensus 956 ~~~d~~v~vwd~~~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1101)
.+.+|-+..||..+++....-...+ ....|.++...++|.+.+++ .+| |..|+..+++.. .+....-++. ..
T Consensus 555 ~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~~~~-~~~~~dGl~~----~~ 627 (781)
T 3v9f_A 555 ATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSKKCFY-TYDHSNNIPQ----GS 627 (781)
T ss_dssp EETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTTEEE-EECGGGTCCS----SC
T ss_pred EECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCCCceE-EecccCCccc----cc
Confidence 7665544889988765432211111 13468899999999876644 455 777888776553 3332222221 11
Q ss_pred ccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1035 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1035 v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
...-++...+ +|. |..|+.+| +..++...
T Consensus 628 f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 628 FISGCVTKDH-NGL-IYFGSING-LCFFNPDI 656 (781)
T ss_dssp EEEEEEEECT-TSC-EEEEETTE-EEEECSCC
T ss_pred cccCceEECC-CCE-EEEECCCc-eEEEChhh
Confidence 2222455555 554 55566677 56667654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-13 Score=166.14 Aligned_cols=240 Identities=13% Similarity=0.064 Sum_probs=162.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe--C----CeEEEEECCCCceeeEecCCCCC--eEEEEEecCCCcEEEEEeccCe-----
Q 001318 804 PEEAVPCFALSKNDSYVMSAS--G----GKISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSS----- 870 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s--d----g~i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg~----- 870 (1101)
|...+..++|||||++||.+. + ..|++||+.+++.+. ..+... ...++|+| |++.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCCcc
Confidence 455688999999999999653 2 479999999988651 112122 26899999 8999999888766
Q ss_pred --------EEEEEeecce----EeeeecCcccCeeEEEEcCCCCEEEEEeCCC----ceEEEeCCCcccccceeeecCCC
Q 001318 871 --------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTG 934 (1101)
Q Consensus 871 --------v~vwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~ 934 (1101)
|++|++.++. ++.....|...+.++.|||||++|+.++.++ .|.+|+..+++. ..+....
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~- 271 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVKGV- 271 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEECS-
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeecCC-
Confidence 9999998764 4444455667889999999999998887666 577776554331 1122111
Q ss_pred CCCCCCCCeEEEEcCCCcEEEE-Ee----CCeEEEEEcCCcee--eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEE
Q 001318 935 RTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1007 (1101)
Q Consensus 935 ~~~~~~~v~~~~~s~dg~~la~-~~----d~~v~vwd~~~~~~--~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~ 1007 (1101)
..+....+ ++|. ++. +. ++.|.+||+.++.. ...+....+...+..++|+ ++.++++...|+..+
T Consensus 272 -----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 272 -----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp -----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred -----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 13455556 6777 554 43 47899999987753 2233322225568889998 778899999999988
Q ss_pred EEEcC-CceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE-EEe---cCCcEEEEeccCCC
Q 001318 1008 VFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1008 vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~-s~~---~dg~v~vW~~~~~~ 1068 (1101)
||.+. +++....+. ++. ...+. .++++| |++.++ +.+ ..++|++||+.+++
T Consensus 344 l~~~~~~g~~~~~l~----~~~---~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQ----LPG---VGAAS--NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECC----CSS---SSEEC--CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEec----CCC---CeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88765 455555444 221 11133 567788 556555 333 34789999998877
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-12 Score=140.57 Aligned_cols=277 Identities=9% Similarity=0.046 Sum_probs=185.9
Q ss_pred EEcCCCceEEeeec-----CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 745 IFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 745 ~~s~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
...|+++.+++... ++.+.+.|. .+++.+.....+ ..+ .++++|||++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~----------------------~t~~v~~~I~vG---~~P--~va~spDG~~ 91 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDG----------------------EAGRVIGMIDGG---FLP--NPVVADDGSF 91 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEET----------------------TTTEEEEEEEEC---SSC--EEEECTTSSC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEEC----------------------CCCeEEEEEECC---CCC--cEEECCCCCE
Confidence 44688888777765 467777665 344433322222 222 3999999998
Q ss_pred EEEEe-----------CCeEEEEECCCCceeeEecCCC-------CCeEEEEEecCCCcEEEEEec--cCeEEEEEeecc
Q 001318 820 VMSAS-----------GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVD 879 (1101)
Q Consensus 820 la~~s-----------dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~ 879 (1101)
++++. ++.|.+||..+++.+.++.-.. .....++|+| ||++|+++.. ++.|.++|+.++
T Consensus 92 lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~ 170 (386)
T 3sjl_D 92 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGK 170 (386)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCC
Confidence 87764 4679999999999988874221 2466799999 8888887763 689999999999
Q ss_pred eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC-cccccceeeecCCCCCCCCCCC-eEEEE-cCCCcEEEE
Q 001318 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSD-TRVQF-HQDQIHFLV 956 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v-~~~~~-s~dg~~la~ 956 (1101)
+.+.++.-.. . ...+....+.+++.+.||++.+.++.+ ++..... ...+. .....+ ....| .++|+++.+
T Consensus 171 ~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~v 243 (386)
T 3sjl_D 171 AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVWP 243 (386)
T ss_dssp EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEEE
T ss_pred cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEEE
Confidence 9998885321 1 223433456777888888888888876 4431111 01111 000112 22456 478988788
Q ss_pred EeCCeEEEEEcCCce--eeeecc--------CCCCCCCeeEEEEcCCCCEEEEEEc----------CCeEEEEEcCCcee
Q 001318 957 VHETQLAIFETTKLE--CVKQWV--------PRESSAPITHATFSCDSQLVYACFL----------DATVCVFSAANLKL 1016 (1101)
Q Consensus 957 ~~d~~v~vwd~~~~~--~~~~~~--------~~~h~~~i~~l~~spdg~~l~s~s~----------dg~v~vwd~~~~~~ 1016 (1101)
+.++.|.+.|+.+.. .+..+. ..-....+..++++++++.|+.... ...|.+.|+.+++.
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 888999999997654 333322 0001234556888999999888753 25799999999999
Q ss_pred eeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEE-ecCCcEEEEeccCCC
Q 001318 1017 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALG-LSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~-~~dg~v~vW~~~~~~ 1068 (1101)
+.++. +... .+ .|++++ |++ +|+++ ..++.|.|+|..+++
T Consensus 324 ~~~i~----vg~~-----~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 324 LAKFE----MGHE-----ID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEE----EEEE-----EC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEE----CCCC-----cc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCc
Confidence 99887 2222 33 799999 555 66654 558999999999988
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-11 Score=130.37 Aligned_cols=237 Identities=10% Similarity=0.074 Sum_probs=163.9
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..+..++++++|..+++...++.|..|+.. +......+. .....+..++++++|+
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-----------------------g~~~~~~~~--~~~~~~~~i~~~~~g~ 111 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-----------------------GIIKEYTLP--NPDSAPYGITEGPNGD 111 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECS--STTCCEEEEEECTTSC
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-----------------------CcEEEEeCC--CcCCCceeeEECCCCC
Confidence 457789999999877776667888888752 111000011 1345688999999998
Q ss_pred EEEEEe-CCeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee-ecCcccCeeEE
Q 001318 819 YVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGL 895 (1101)
Q Consensus 819 ~la~~s-dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l 895 (1101)
++++.. ++.|.+||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.++
T Consensus 112 l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 188 (299)
T 2z2n_A 112 IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGI 188 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeE
Confidence 887776 689999998 5554432 233456789999999 7888877767789999998 6665432 33345568899
Q ss_pred EEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeee
Q 001318 896 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVK 974 (1101)
Q Consensus 896 ~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~ 974 (1101)
++.++|.+.++...++.|.+|+. +++... .... .. ...+..++++++|+.+++. .++.|..||. +++. .
T Consensus 189 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~ 258 (299)
T 2z2n_A 189 TKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIP-TP---NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-E 258 (299)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-E
T ss_pred EECCCCCEEEEccCCceEEEECC-CCcEEE---EECC-CC---CCCceeEEECCCCCEEEeccCCceEEEECC-CCce-E
Confidence 99999998887777888999998 544221 1111 11 1367899999999977665 6789999998 4543 3
Q ss_pred eccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 001318 975 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 975 ~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
.+....+...+.++++ ++|+++++.+ .+.|..++..+++
T Consensus 259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 3332344568999999 8888777654 5677778877654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-12 Score=137.52 Aligned_cols=239 Identities=10% Similarity=0.053 Sum_probs=166.3
Q ss_pred CeeEEEEecCCCEEE-EEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 807 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|++||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 688999999999766 434 68999999866543322223345688999999 787666555 88999999876543222
Q ss_pred ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEE
Q 001318 885 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 963 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~ 963 (1101)
.......+.+++++++|+++++...++.|.+|+..+.... . ..... ...+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~-~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----V-LPFTG---LNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----E-CCCCS---CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----e-ecccc---CCCceeEEEeCCCCEEEEECCCCEEE
Confidence 2223356899999999998888777888999976543211 1 11111 1256889999999977764 578999
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEe
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1043 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~ 1043 (1101)
+||..+........ .+...+.+++++++|.++++...++.|.+||..+..... +. ..+ .-.+.+++++
T Consensus 175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----~~~----~~~p~~i~~~ 242 (270)
T 1rwi_B 175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----FTG----LNTPLAVAVD 242 (270)
T ss_dssp EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----CCS----CSCEEEEEEC
T ss_pred EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----cCC----CCCceeEEEC
Confidence 99998776544322 223678999999999877777778899999987654432 11 001 0234589999
Q ss_pred CCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1044 PQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1044 ~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+ +++++++...++.|.++++...+
T Consensus 243 ~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 243 S-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp T-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred C-CCCEEEEECCCCEEEEEcCCCcc
Confidence 8 67888999999999999997765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-12 Score=134.15 Aligned_cols=239 Identities=8% Similarity=0.030 Sum_probs=163.1
Q ss_pred CcEEEEEecCCCeEEE-EEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 347 SPMSMDFHPVQQTLLL-VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 347 ~v~~~~~spdg~~lla-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
...+++++|+|+ +++ +.+.++.|.+||..+..... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 788999999998 566 55778999999976654321 112334568899999999966665
Q ss_pred EcCCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEee
Q 001318 426 YSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504 (1101)
Q Consensus 426 ~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 504 (1101)
. ++.|.+||..+..... +. .....+..++++++|+ ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999988754321 22 2335789999999998 6777777889999986665544333333345667776
Q ss_pred eecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCc
Q 001318 505 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 584 (1101)
Q Consensus 505 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 584 (1101)
+++|.++++...++.|.+||............... ....++++++|..+++...++.
T Consensus 158 --~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------~p~~i~~d~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 158 --DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT---------------------APWGIAVDEAGTVYVTEHNTNQ 214 (270)
T ss_dssp --CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC---------------------SEEEEEECTTCCEEEEETTTSC
T ss_pred --eCCCCEEEEECCCCEEEEEecCCCceEeecccCCC---------------------CceEEEECCCCCEEEEECCCCc
Confidence 45667777777788999999875433221111112 3445666666666677677889
Q ss_pred EEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 585 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 585 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
|.+|+........ .. ..+...+.+++++++|+++++...++.|++++....
T Consensus 215 v~~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 215 VVKLLAGSTTSTV-LP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEECTTCSCCEE-CC-CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEEcCCCCccee-ec-cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 9999987654332 22 122245788999999998888888999999987655
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-11 Score=133.30 Aligned_cols=237 Identities=11% Similarity=0.029 Sum_probs=162.3
Q ss_pred EEEEecCCCEEEEEe-----------CCeEEEEECCCCceeeEecCC-------CCCeEEEEEecCCCcEEEEEec--cC
Q 001318 810 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS 869 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~lasg~~--dg 869 (1101)
.++++|||++++++. ++.|.+||..+++.+.++.-. ......++|+| |+++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999999874 467999999998888776432 12345899999 8998888874 57
Q ss_pred eEEEEEeecceEeee-ecCcccCeeEEEEcCCC-CEEEEEeCCCceEEEeCCCcccccceee-ecCCCCCCCCCCCeEEE
Q 001318 870 SIQIYNVRVDEVKSK-LKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 870 ~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~dg-~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~ 946 (1101)
.|.++| .+++.+.. +... + ++.+.|++ +.+++.+.||++.+++. +++....... ....+.. .......
T Consensus 149 ~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecce
Confidence 899999 99988877 5432 2 24455655 45667778999999999 6553311100 0011110 0112345
Q ss_pred EcCCCcEE-EEEeCCeEEEEEcCCce--eeeeccCCC--------CCCCeeEEEEcCCCCEEEEEEc----------CCe
Q 001318 947 FHQDQIHF-LVVHETQLAIFETTKLE--CVKQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DAT 1005 (1101)
Q Consensus 947 ~s~dg~~l-a~~~d~~v~vwd~~~~~--~~~~~~~~~--------h~~~i~~l~~spdg~~l~s~s~----------dg~ 1005 (1101)
+.+++..+ +++..+.+.+.|+.+.. .+..+.... .......++++||++.|+++.. .+.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 66765544 44677889999987552 222222100 1223455889999998887654 357
Q ss_pred EEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-cCCcEEEEeccCCC
Q 001318 1006 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1006 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~-~dg~v~vW~~~~~~ 1068 (1101)
|.++|..+++.+.++. .+. .+..++|+| |++ +++++. .++.|.|||+.+++
T Consensus 300 V~VID~~t~~vv~~i~----~g~-------~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 300 VTSVTGLVGQTSSQIS----LGH-------DVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEEECCCCEEEEEEE----CCC-------CcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9999999999998886 221 233799999 677 777777 58999999999988
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-12 Score=158.68 Aligned_cols=284 Identities=8% Similarity=-0.073 Sum_probs=175.7
Q ss_pred ccCccceeeccCCC---cceeeeccccCC-CccccccccCccccccceEEEEEcCCCceEEee-----ecCceEEeeecc
Q 001318 698 LADVKPRITEESND---KSKVWKLTELSE-PNQCRSLRLPENLRATKISRLIFTNSGNAILAL-----ASNAIHLLWKWQ 768 (1101)
Q Consensus 698 ~~~~~~l~~~~~d~---~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-----~~dg~i~iw~~~ 768 (1101)
.+++..++....++ ...+|....... ...+........+|...+..++|||||++|+.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 36777776554433 355676543211 111111100112355678999999999998843 334678888774
Q ss_pred ccccCCCCceeeeecCccccCCCcccc-ccccCCCCCCCCeeEEEEecCCCEEEEEe-CCe-------------EEEEEC
Q 001318 769 RTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK-------------ISLFNM 833 (1101)
Q Consensus 769 ~~~~~~~~~~~~~~~~~lw~~~~g~~~-~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~-------------i~vwd~ 833 (1101)
+ |..+ ...+. ......++|+|||+.|+.++ +.. |++|++
T Consensus 156 t----------------------g~~~~~~~~~----~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l 209 (695)
T 2bkl_A 156 S----------------------GEWSKVDVIE----GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTL 209 (695)
T ss_dssp T----------------------CCBCSSCCBS----CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEET
T ss_pred C----------------------CCCcCCcccC----cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEEC
Confidence 3 3322 11111 11125789999999999887 554 999999
Q ss_pred CCCc----eeeEecCCCCCeEEEEEecCCCcEEEEEeccC----eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE
Q 001318 834 MTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 905 (1101)
Q Consensus 834 ~~~~----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~ 905 (1101)
.++. ++.....+...+..+.||| ||++|+.++.++ .|++|+..+++ ...+..+...+....+ ++|.+++
T Consensus 210 ~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~ 286 (695)
T 2bkl_A 210 GTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYV 286 (695)
T ss_dssp TSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEE
T ss_pred CCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEE
Confidence 8876 2333334556789999999 888888887666 67777655444 4445556666677777 5666444
Q ss_pred EEe---CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcC-CceeeeeccCCC
Q 001318 906 SSG---ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECVKQWVPRE 980 (1101)
Q Consensus 906 s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~-~~~~~~~~~~~~ 980 (1101)
+.. .++.|.+||+.+++......+ ...+. ...+..++|+ ++.++++ ..|+..++|.+. +++....+.. .
T Consensus 287 ~s~~~~~~~~l~~~d~~~~~~~~~~~l--~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~ 360 (695)
T 2bkl_A 287 LTDEGAPRQRVFEVDPAKPARASWKEI--VPEDS--SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQL-P 360 (695)
T ss_dssp EECTTCTTCEEEEEBTTBCSGGGCEEE--ECCCS--SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCC-S
T ss_pred EECCCCCCCEEEEEeCCCCCccCCeEE--ecCCC--CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecC-C
Confidence 444 257899999987643211211 11111 1256778888 6666666 578877777554 3554444432 2
Q ss_pred CCCCeeEEEEcCCCCEEEEEE----cCCeEEEEEcCCcee
Q 001318 981 SSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKL 1016 (1101)
Q Consensus 981 h~~~i~~l~~spdg~~l~s~s----~dg~v~vwd~~~~~~ 1016 (1101)
+...+..++++||++.|+... ..++|++||+.+++.
T Consensus 361 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 361 GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 256788899999998776333 357899999998874
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-08 Score=123.80 Aligned_cols=510 Identities=11% Similarity=0.056 Sum_probs=284.8
Q ss_pred CCcEEEEEec--CCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 346 SSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 346 ~~v~~~~~sp--dg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
..|+++.... +|. +..|+.++.|..+|..+++.... .... ...-....|.++...++|.+.+
T Consensus 115 ~~i~~i~~d~~~~g~--lwi~t~~~gl~~~~~~~~~~~~~------~~~~--------~~~l~~~~i~~i~~d~~g~lwi 178 (781)
T 3v9f_A 115 NDVTHITSSVQAGKG--LWVCTYYRGIEYLDIATGKFTHY------NKST--------VPALPSEQTWTATEAEDGKLYI 178 (781)
T ss_dssp SCEEEEEECSSTTSE--EEEEESSSCEEEEETTTTEEEEE------STTT--------CTTCSCCCEEEEEEEETTEEEE
T ss_pred CcceEEEecCccCCC--EEEEECCCCeeEEECCCCeEEee------ccCc--------ccCCCccceEEEEECCCCCEEE
Confidence 3688998888 776 44466456788999877653221 0000 0001234689998888887665
Q ss_pred EEEcCCeEEEEEccCCceeeeeeee----ccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecC-----
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG----- 494 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l----~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----- 494 (1101)
|+.++-+..||..+++........ .-....|.++...+++. +. .|+.+ -+.+||..+++.......
T Consensus 179 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~ 253 (781)
T 3v9f_A 179 -GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN--IW-IGTSK-GLALFNANTETFTNFHNNPGNIH 253 (781)
T ss_dssp -EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC--EE-EEETT-EEEEEETTTTEEEC---------
T ss_pred -EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC--EE-EEeCC-cHheECCCCCcEEEEEcCCCccc
Confidence 555656889998876432210000 01135699999988887 33 34444 688999877654322111
Q ss_pred --cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 495 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 495 --h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
....|.++.. +.+| .|..|+..+-|.++|..+......... ....+. .+... .+.....+.++..+.+
T Consensus 254 ~l~~~~i~~i~~--d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~---~f~~~~-~~~~~---~~l~~~~v~~i~~D~~ 323 (781)
T 3v9f_A 254 GALSSYIFSIKQ--LKDN-KLWIATELNGIMILDLQQNQFLLPEQI---RFEFIR-EGDNN---YSLSNASARYIFQDSF 323 (781)
T ss_dssp --CCCCEEEEEE--CTTS-EEEEEESSSCEEEEETTCC------------CEEEC-BCSST---TSBSSSCEEEEEECSS
T ss_pred cccCceEEEEEE--CCCC-CEEEEeCCCCeEEECCCCCeeeeeecc---cccccc-CCCCC---CCCCCCeEEEEEEeCC
Confidence 2345777764 4555 455566645677888765432211000 000000 00000 0111234555556665
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEc-------CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSID-------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
|+ +-.|..++-|..|+..++....... ..-....|.++...++|.+. +|+.++-|..|+..++ .. ..+.
T Consensus 324 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~~-~~~~ 399 (781)
T 3v9f_A 324 NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKR-VA-IYNK 399 (781)
T ss_dssp CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEE-EE-ECC-
T ss_pred CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCC-eE-EEcc
Confidence 55 5667777788999887654332211 00112357788888777654 5666667888886543 11 1000
Q ss_pred cccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCc
Q 001318 646 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 725 (1101)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~ 725 (1101)
. . .
T Consensus 400 ~---~--------------------------------------------------------------------------~ 402 (781)
T 3v9f_A 400 E---N--------------------------------------------------------------------------R 402 (781)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C---C--------------------------------------------------------------------------C
Confidence 0 0 0
Q ss_pred cccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCC
Q 001318 726 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 805 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~ 805 (1101)
......|.++...++|.. ..++.++.+..++.. ++........ ....
T Consensus 403 ---------~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~----------------------~~~~~~~~~~-~~~~ 449 (781)
T 3v9f_A 403 ---------ELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTR----------------------LKKFQIIELE-KNEL 449 (781)
T ss_dssp ----------CCCSBEEEEEECTTSCE-EEEETTEEEEEECSS----------------------SCEEEECCST-TTCC
T ss_pred ---------CCCCcceEEEEECCCCCE-EEEeccCCEEEEcCC----------------------CCcEEEeccC-CCCC
Confidence 002356788888888874 445555556666542 2221111000 0134
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCC-----CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 806 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
..|.++...++|.+.+.. .+.|..||..+++........ ...|.++...+ ++++.+ |+.++-|..||..+++
T Consensus 450 ~~v~~i~~d~~g~lwigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGT-HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSEEEEEE-TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCCEEEEE-CCceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCe
Confidence 678899988888755544 477999998876554333222 35689999988 676555 5554457778876655
Q ss_pred EeeeecC---cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 881 VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 881 ~~~~l~~---h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
....... ....|.++...++|.+.++.. +|.|..||..+++. .......+-. ...|.++...++|.+.+++
T Consensus 527 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~---~~~~~~~gl~--~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 527 VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY---QVFQRKEGLP--NTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC---EEECGGGTCS--CCCCCEEEECSSSCEEEEC
T ss_pred EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE---EEccccCCCC--CceEEEEEECCCCCEEEEc
Confidence 3322111 245689999988888766554 66448888876542 1222222221 1467899999999877765
Q ss_pred eCCeEEEEEcCCceeeeeccCCCC-CC--CeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 958 HETQLAIFETTKLECVKQWVPRES-SA--PITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 958 ~d~~v~vwd~~~~~~~~~~~~~~h-~~--~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
. +.|..|+..+.+...--..++- .. ...++...+||++++ |+.+|. ..++..
T Consensus 601 ~-~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl-~~f~p~ 655 (781)
T 3v9f_A 601 N-TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSINGL-CFFNPD 655 (781)
T ss_dssp S-SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTEE-EEECSC
T ss_pred C-CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCCce-EEEChh
Confidence 4 4477888877654332111111 11 235677788988766 556774 445644
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=131.62 Aligned_cols=233 Identities=12% Similarity=0.090 Sum_probs=167.0
Q ss_pred EEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCC-CCeEEEEEecCCCeEEEEEcCCeEEEEEccC
Q 001318 360 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 438 (1101)
Q Consensus 360 llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 438 (1101)
+|++++.|+.|.+||.++|+.+.+ +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 699999999999999999998764 23333 4688999999999998 45788999999 7
Q ss_pred Cceeeeeeeeccc-cCCeeEEEEcCCCCeEEEEEecC-CCcEEEEeCCCCceEEEecC------cccCeEEEeeeecCCc
Q 001318 439 GDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENI 510 (1101)
Q Consensus 439 ~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~v~~~~~~~~ 510 (1101)
|+.+.. +..+ ...+.++.+.++|+ ++++.+. ++.|..+|. +|+.+..+.. +......++ ...+|
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~--~~~~G 136 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN--KNKKG 136 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE--ECTTS
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce--ECCCC
Confidence 776654 3333 34788999999999 6777666 778888884 8888877641 212233333 35678
Q ss_pred cEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001318 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 590 (1101)
Q Consensus 511 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1101)
+++++...++.|..||.. ++.+.++.... ... .+...++++.+++++.++.|..+|.
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~---------------------~~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPF---------------------SSAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCC---------------------EEEECTTSCEEEECBTTSEEEEECT
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-Ccc---------------------ceeEcCCCCEEEEeCCCCeEEEEeC
Confidence 899999999999999987 77776665432 122 2344566677888888889999999
Q ss_pred CCCceeEEEcCCC----CCCCcCeEEEccCCCEEEEEeCC--------CcEEEEEecCccccccccc
Q 001318 591 DSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND--------NGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 591 ~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~ 645 (1101)
.+|+.+..+.... ....+..++..++|+.+++.... +..+++.+....+.+-.+.
T Consensus 194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 9999999986322 12336678888999998887522 2345666643325544443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-11 Score=135.60 Aligned_cols=206 Identities=12% Similarity=0.084 Sum_probs=142.3
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 808 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
...++|+|||++++++. ++.|.+.|+.+++.+.++.-.. . ....|.+.+.+++.+.||.+.+.+..+++....
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 34578889999888875 3689999999999988876422 1 334442446666677788888888765554422
Q ss_pred ----ecCcccCe-eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCC----CCCCCCeEEEEcCCCcEEE
Q 001318 885 ----LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 885 ----l~~h~~~V-~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~la 955 (1101)
+.....++ ..+.|++++..++..+..+.|.+.|+.+................ ........++|+||+++++
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 22112222 23578999988887788899999998764322111111110000 0001233479999999887
Q ss_pred EEe-----------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC-EEEEEE-cCCeEEEEEcCCceeeeec
Q 001318 956 VVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 956 ~~~-----------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s~s-~dg~v~vwd~~~~~~~~~~ 1020 (1101)
+.. .+.|.++|+.+.+.+..+.. .....+++|+|||+ +|+++. .++.|.|+|+.+++.+.++
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 742 24799999999999998864 23689999999999 888888 5999999999999999887
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=152.04 Aligned_cols=241 Identities=12% Similarity=0.080 Sum_probs=159.1
Q ss_pred CCeeEEEEecCCCEEEEEe--CC----eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCe---------
Q 001318 806 EAVPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS--------- 870 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~--------- 870 (1101)
..+..++|||||++||.+. +| .|++||+.+++.+.... +...+..++|+| | +.|+.+..++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEEST-T-SEEEEEECCCC--------C
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEEC-C-CEEEEEEecCcccccccccC
Confidence 4678899999999999876 23 59999999988765311 122235789999 7 78887776554
Q ss_pred -----EEEEEeecce----EeeeecCcccCeeEEEEcCCCCEEEEEeCCC-----ceEEEeCCCcccccceeeecCCCCC
Q 001318 871 -----IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRT 936 (1101)
Q Consensus 871 -----v~vwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~ 936 (1101)
|++|++.++. ++.....|...+.++.|||||++|+..+.++ .|.+||+.++.......+... .
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~ 316 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD---L 316 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS---S
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC---C
Confidence 8999987654 3333334444688999999999998877554 799999987521101112111 1
Q ss_pred CCCCCCeEEEEcCCCcEEEE-Ee----CCeEEEEEcCCce-eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEE
Q 001318 937 PTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg~~la~-~~----d~~v~vwd~~~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
..+... ++|+|+.|+. +. ++.|.+||+.++. ....+.. ++...+..++|+ ++.++++...|+..+||.
T Consensus 317 ---~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 317 ---KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNLESVGIA-GNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp ---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred ---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 123344 4589998887 43 3469999998852 3333332 445567788887 677888889999887776
Q ss_pred cC-CceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE-EEe---cCCcEEEEeccCCC
Q 001318 1011 AA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1011 ~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~-s~~---~dg~v~vW~~~~~~ 1068 (1101)
++ ++.....+. ++. ...+. .++++| |++.++ +.+ ..++|++||+.+++
T Consensus 391 ~~~~g~~~~~l~----~~~---~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLDGKPAGAVS----LPG---IGSAS--GLSGRP-GDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTSCEEEECB----CSS---SCEEE--EEECCB-TCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCCCCceeecc----CCC---CeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 54 455555544 221 11133 688888 455444 333 34789999998877
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-11 Score=150.28 Aligned_cols=282 Identities=11% Similarity=0.043 Sum_probs=172.5
Q ss_pred ccCccceeeccCCC---cceeeecccc----CCCccccccccCccccccceEEEEEcCCCceEEeeecC-----ceEEee
Q 001318 698 LADVKPRITEESND---KSKVWKLTEL----SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-----AIHLLW 765 (1101)
Q Consensus 698 ~~~~~~l~~~~~d~---~i~~w~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-----g~i~iw 765 (1101)
.+++++++....++ ...+|..... .....+.....-..++...+..++|||||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 36777776554433 3566766532 11111100000012233478899999999998877654 357777
Q ss_pred eccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CC--------------eEEE
Q 001318 766 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--------------KISL 830 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg--------------~i~v 830 (1101)
|+. +|..+.... +...+..++|+|| +.|+.++ ++ .|++
T Consensus 195 dl~----------------------tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 247 (741)
T 1yr2_A 195 GVA----------------------DGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWL 247 (741)
T ss_dssp ETT----------------------TCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEE
T ss_pred ECC----------------------CCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEE
Confidence 663 333322111 1112356899999 9888876 43 3899
Q ss_pred EECCCCce--eeEecC--CCCCeEEEEEecCCCcEEEEEeccC-----eEEEEEeecc--eEeeeecCcccCeeEEEEcC
Q 001318 831 FNMMTFKT--MATFMP--PPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD--EVKSKLKGHSKRITGLAFSH 899 (1101)
Q Consensus 831 wd~~~~~~--~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~ 899 (1101)
|++.++.. ...+.. +...+..+.||| ||++|+..+.++ .|++||+.++ ++...+..+...+.... +|
T Consensus 248 ~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~ 325 (741)
T 1yr2_A 248 HRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG 325 (741)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE
T ss_pred EECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec
Confidence 99987652 223332 333588999999 898888877554 8999999877 31455655655555554 48
Q ss_pred CCCEEEEEeCC----CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcC-Cceee
Q 001318 900 ALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECV 973 (1101)
Q Consensus 900 dg~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~-~~~~~ 973 (1101)
+|+.|+..+.+ +.|.+||+.++. .. ...+..++. ..+..+.++ ++.++++ ..++..++|.+. ++...
T Consensus 326 dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 326 VGDQLWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp ETTEEEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 99988887764 449999988743 11 112222222 245667777 4555555 577776666443 35555
Q ss_pred eeccCCCCCCCeeEEEEcCCCCEEEEEE----cCCeEEEEEcCCcee
Q 001318 974 KQWVPRESSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKL 1016 (1101)
Q Consensus 974 ~~~~~~~h~~~i~~l~~spdg~~l~s~s----~dg~v~vwd~~~~~~ 1016 (1101)
..+.. .+...+..++++||++.|+... ..++|++||+.+++.
T Consensus 399 ~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 399 GAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 55442 2256789999999998666332 357899999999874
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-10 Score=121.01 Aligned_cols=278 Identities=9% Similarity=0.054 Sum_probs=187.2
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
....+.+++++++|+..++...++.|.+|+.. +......+. .....+.+++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~--~~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVP--TPDAKVMCLIVSSL 72 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECS--STTCCEEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECC--CCCCcceeEEECCC
Confidence 34577899999999977777677888888753 111111111 13356889999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceee-EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee-eecCcccCee
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT 893 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~ 893 (1101)
|+++++.. ++.|..||.. ++... .+......+..+++++ +++++++...++.|..||.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 99777766 6889999987 55432 2232346789999999 88888777668899999987 55442 2333456789
Q ss_pred EEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCcee
Q 001318 894 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 972 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~ 972 (1101)
++++.++|++.++...++.|..|+. +++... .... ... ..+..++++++|..+++. ..+.|.+||. +++.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TNA---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-STT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CCC---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 9999999997777766788999998 433221 1111 111 357899999999877775 4568999998 4544
Q ss_pred eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 973 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 973 ~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
.... ...+...+.+++++++|++.++...++.|.+||. +++.. .+. .+.+ . ..+.++++.+ +|++.++
T Consensus 221 ~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~--~~~~~i~~~~-~g~l~v~ 288 (300)
T 2qc5_A 221 SEYD-IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--N--AEPHGITFGK-DGSVWFA 288 (300)
T ss_dssp EEEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--T--CCCCCEEECT-TSCEEEE
T ss_pred EEEE-CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--C--CccceeEeCC-CCCEEEE
Confidence 3322 2234567899999999997776666789999998 45443 222 1111 1 1233788888 5665555
Q ss_pred EecCCcEEEEecc
Q 001318 1053 GLSDGGVHVFEPL 1065 (1101)
Q Consensus 1053 ~~~dg~v~vW~~~ 1065 (1101)
.. . .|..++..
T Consensus 289 ~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LK-C-KIGKLNLN 299 (300)
T ss_dssp CS-S-EEEEEEEC
T ss_pred cc-C-ceEEeCCC
Confidence 54 4 67776653
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-10 Score=123.61 Aligned_cols=257 Identities=14% Similarity=0.102 Sum_probs=162.1
Q ss_pred cCCCCcEEEEEecCCCeEEEE-------EecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLV-------GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llat-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 415 (1101)
..-....+++|+++|+ ++++ +..++.|.+||..+++.... . . ....++...+.++++
T Consensus 15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~---~---------~~~~~~~~~~~~i~~ 78 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C---K---------PEVNGYGGIPAGCQC 78 (314)
T ss_dssp CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E---C---------CEETTEECCEEEEEE
T ss_pred ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E---e---------cccCCCCCCCceEEE
Confidence 3445678999999998 5666 56789999999888765321 0 0 001234567999999
Q ss_pred ecC-CCeEEEEEcCCeEEEEEccCCceeee-eeeecc-ccCCeeEEEEcCCCCeEEEEEecCC---------------Cc
Q 001318 416 SPD-GSLFGVAYSRHIVQIYSYHGGDEVRQ-HLEIDA-HVGGVNDIAFSHPNKQLCVITCGDD---------------KT 477 (1101)
Q Consensus 416 spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d---------------~~ 477 (1101)
+++ |+++++. ..+.|.+||.+ ++.... .....+ ....+.+++++++|+ ++++...+ +.
T Consensus 79 ~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 79 DRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp CSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred ecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCe
Confidence 999 6655544 44579999998 653321 100111 224589999999998 56665544 56
Q ss_pred EEEEeCCCCceEEEecCcccCeEEEeee--ecCCccEEE-EEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCce
Q 001318 478 IKVWDATNGAKQYIFEGHEAPVYSVCPH--HKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 554 (1101)
Q Consensus 478 i~iwd~~~~~~~~~~~~h~~~v~~v~~~--~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 554 (1101)
|..||.. ++..... .+......++++ .+++++.++ +...++.|.+||.......... ..+.-.+
T Consensus 155 l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-------~~~~~~~---- 221 (314)
T 1pjx_A 155 IYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-------KVWGHIP---- 221 (314)
T ss_dssp EEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-------EEEEECC----
T ss_pred EEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-------eEEEECC----
Confidence 7778765 5544332 234456777774 115665554 4456789999987621111000 0000000
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE-eCCCcEEEEE
Q 001318 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILA 633 (1101)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~ 633 (1101)
++.......++++++|+.+++...++.|.+||..+++.+..+..+. ..+.+++|+++++.|+++ ..++.|..|+
T Consensus 222 ---~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 222 ---GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp ---CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ---CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 0000134456777787777777788999999998787777766442 357899999999955554 4568899998
Q ss_pred ecCc
Q 001318 634 TSDG 637 (1101)
Q Consensus 634 ~~~~ 637 (1101)
+...
T Consensus 297 ~~~~ 300 (314)
T 1pjx_A 297 WQRN 300 (314)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7643
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=127.31 Aligned_cols=245 Identities=8% Similarity=0.024 Sum_probs=162.1
Q ss_pred cceEEEEEcCCCceEEe-------eecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC-CCCCCCCeeE
Q 001318 739 TKISRLIFTNSGNAILA-------LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT-DSNPEEAVPC 810 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~-~~~~~~~i~~ 810 (1101)
....+++|+++|..+++ ...++.|.+|+...+ ........ ..++...+.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----------------------~~~~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----------------------KKTVICKPEVNGYGGIPAG 75 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----------------------CEEEEECCEETTEECCEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----------------------cEEEEEecccCCCCCCCce
Confidence 34578999999987777 567788888875322 11110000 0013356889
Q ss_pred EEEecC-CCEEEEEeCCeEEEEECCCCceeeE-ecC----CCCCeEEEEEecCCCcEEEEEecc---------------C
Q 001318 811 FALSKN-DSYVMSASGGKISLFNMMTFKTMAT-FMP----PPPAATFLAFHPQDNNIIAIGMDD---------------S 869 (1101)
Q Consensus 811 ~~~s~d-g~~la~~sdg~i~vwd~~~~~~~~~-~~~----~~~~i~~l~~sp~d~~~lasg~~d---------------g 869 (1101)
++++++ |+++++..++.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776665556689999988 665433 221 123588999999 78877766554 5
Q ss_pred eEEEEEeecceEeeeecCcccCeeEEEEc----CCCCEEEEE-eCCCceEEEeCC-CcccccceeeecCCCCCCCCCCCe
Q 001318 870 SIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNVLVSS-GADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDT 943 (1101)
Q Consensus 870 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s----~dg~~l~s~-s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~ 943 (1101)
.|..||.. ++... +..+......++|+ +||+.|..+ ..++.|.+|+++ ++............++. ...+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGGAD 229 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--SCEEE
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--CCCCC
Confidence 67777755 54333 22344456889999 999765544 567889999986 33322112222222221 02467
Q ss_pred EEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEE-EEEcCCeEEEEEcCC
Q 001318 944 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1013 (1101)
Q Consensus 944 ~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~-s~s~dg~v~vwd~~~ 1013 (1101)
.++++++|+++++. .++.|.+||..+++.+..+. .+...+.+++|+|||+.|+ +...++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999988874 67899999998777666554 3357899999999999555 444567899999864
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-09 Score=115.16 Aligned_cols=240 Identities=12% Similarity=0.032 Sum_probs=162.3
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
....+.++++.++|+ +.++...++.|.+||.. ++... + .+..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~---------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---F---------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---E---------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---E---------------ECCCCCCcceeEEECCCCCEEE
Confidence 456789999999998 56666678999999987 54332 1 1223346799999999999888
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE-EecCcccCeEEE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSV 502 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~v 502 (1101)
+...++.|..||.. ++.. . ..+......+.++++.+++. ++++...++.|..||.. ++... .+......+..+
T Consensus 78 ~~~~~~~v~~~d~~-g~~~-~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT-E-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEE-E-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeE-E-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999988 5432 1 12333446799999999998 67777778899999987 66543 233344567777
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
++ ++++.+.++...++.|..||. +++.. .+.... .......++++++++..++....
T Consensus 152 ~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~-------------------~~~~~~~i~~d~~g~l~v~~~~~ 208 (300)
T 2qc5_A 152 TL--GSDNALWFTENQNNSIGRITN-TGKLE-EYPLPT-------------------NAAAPVGITSGNDGALWFVEIMG 208 (300)
T ss_dssp EE--CTTSSEEEEETTTTEEEEECT-TCCEE-EEECSS-------------------TTCCEEEEEECTTSSEEEEETTT
T ss_pred EE--CCCCCEEEEecCCCeEEEECC-CCcEE-EeeCCC-------------------CCCCcceEEECCCCCEEEEccCC
Confidence 76 456676666666788998987 32221 111100 01134455666666666666667
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
+.|.+|+. +++.... ........+.+++++++|++.++...++.|..|+.
T Consensus 209 ~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 209 NKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 78999998 5554332 22223345788999999997776666788888876
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-10 Score=130.04 Aligned_cols=239 Identities=13% Similarity=0.075 Sum_probs=160.9
Q ss_pred EEEEecCCCEEEEEe-----------CCeEEEEECCCCceeeEecCC-------CCCeEEEEEecCCCcEEEEEec--cC
Q 001318 810 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS 869 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~lasg~~--dg 869 (1101)
.++++|||++++++. ++.|.++|..+++.+.++.-. ......++|+| |+++|+++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 899999999888774 467999999999998887521 13456789999 8888888764 57
Q ss_pred eEEEEEeecceEeeeecCcccCeeEEEEcCCC-CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEc
Q 001318 870 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 948 (1101)
Q Consensus 870 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 948 (1101)
.|.+.|+.+++.+.++.--.. ....|++ +.+++.+.||++.+.+..+++...... ....-... .....+.|+
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~~--p~~~~~~~~ 273 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVFHTEDE--LLINHPAFS 273 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCCSCTTS--CBCSCCEEC
T ss_pred eEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eeeccCCC--ceeeEeeec
Confidence 999999999998888763211 2233332 455566667777777764433221100 01100000 011345789
Q ss_pred CCCcEEEE-EeCCeEEEEEcCCceee--eeccCCC--------CCCCeeEEEEcCCCCEEEEEEc----------CCeEE
Q 001318 949 QDQIHFLV-VHETQLAIFETTKLECV--KQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DATVC 1007 (1101)
Q Consensus 949 ~dg~~la~-~~d~~v~vwd~~~~~~~--~~~~~~~--------h~~~i~~l~~spdg~~l~s~s~----------dg~v~ 1007 (1101)
+++..++. ...+.+.+.|..+.... ..+.... .......++|+||++.|++... ++.|.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 99887766 56788999998655421 2111100 0122234799999998777653 35799
Q ss_pred EEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-cCCcEEEEeccCCC
Q 001318 1008 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1008 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~-~dg~v~vW~~~~~~ 1068 (1101)
|+|..+++.+.++. .+. .+..+.|+| |++ ++++.. .++.|.|+|+.+++
T Consensus 354 VID~~T~kvv~~I~----vg~-------~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 354 VLNAETGERINKIE----LGH-------EIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEETTTCCEEEEEE----EEE-------EECEEEECC-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEECCCCeEEEEEE----CCC-------CcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCC
Confidence 99999999999887 221 244799999 677 777777 59999999999988
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-10 Score=126.45 Aligned_cols=250 Identities=8% Similarity=-0.009 Sum_probs=163.6
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC--eEEEEEeecceEe
Q 001318 806 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 882 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~ 882 (1101)
.....++++++++++++.. ++.|++||..++........ ..... ++|++ +++.|++++.++ .|++|+...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578999999999666666 68999999988766555443 22334 99999 888888888766 7888887765433
Q ss_pred eee----cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCe-EEEEcCC-CcEEEE
Q 001318 883 SKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT-RVQFHQD-QIHFLV 956 (1101)
Q Consensus 883 ~~l----~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~d-g~~la~ 956 (1101)
..+ ..+...+.+++++|++..|+.+..++.|+.||..++......... ..+... .... .++|+|+ +.++++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence 333 224566789999995555555777889999999876421110000 111111 1113 9999996 554444
Q ss_pred -EeCCeEEEEEcCCceeeeeccCC----C---------CCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 957 -VHETQLAIFETTKLECVKQWVPR----E---------SSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 957 -~~d~~v~vwd~~~~~~~~~~~~~----~---------h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
..++.|+.|+.... +..+... + .-.....++|+|+|+++++-+ .++.|+.|++.+|+......
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 36788999997654 2222110 0 023588999999999888777 78999999988887543322
Q ss_pred CCcc-c-CCCC--CCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1022 PSAY-L-PAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1022 ~~~~-~-~~~~--~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
.... . ..+. ...--.|..+++++ ++.++++-..++.|+.+.+
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 1000 0 0000 00113467899999 4788888888888888776
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-10 Score=121.53 Aligned_cols=237 Identities=12% Similarity=0.061 Sum_probs=155.9
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.+..+.......+|+|+|++|++++..++.|..|+. +++... +..+...+..++++++|
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQ 97 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTS
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCC
Confidence 344456678899999999988899988999999998 444211 23345678999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccc-cCCeeEEEEcCCCCeEEEEE----ecC-------------CCcEEEE
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVIT----CGD-------------DKTIKVW 481 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s----~~~-------------d~~i~iw 481 (1101)
+++++...++.|.+|+.+ ++.........+. ...++++++.++|+ +++| |.. .+.|..|
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEE
Confidence 977766667889999986 4422211111121 23578899999998 6665 332 2568888
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC------CcEEEEecCCCCceeeecCCCCceeEEEEccCCceE
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 555 (1101)
|..+++..... .....+.++| +++++.|+.+... +.|..|++.... .... ..
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~--spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-----------------~~ 232 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAF--SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-----------------RH 232 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEE--CTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEE-----------------EE
T ss_pred cCCCCcEEEEe--cCCCCcceEE--cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-----------------eE
Confidence 87777755433 4445677887 4566767666654 689999887533 1100 00
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 628 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 628 (1101)
+..........++++++|++ .++..+ .|.+|+. .++.+..+.... .+.+++|+++++.|.+++.++.
T Consensus 233 ~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 233 FASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred EEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 00000112234667777774 444444 5999998 577777776543 3788999999998888887543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.7e-11 Score=130.68 Aligned_cols=273 Identities=8% Similarity=-0.023 Sum_probs=176.3
Q ss_pred cceEEEEEcCCCceEEeeec--CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 739 TKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
.....++++++|+.+++... ++.++||.+.. ++...-. -|. .....+-..+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~~~p---~~~----------~~~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLIPFP---PQS----------GNAIITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEEESC---CCC----------SSCCCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCeecCC---Ccc----------cCcccceeEeeEEEEcCC
Confidence 46789999999998777542 34366776531 1111000 000 001125567999999999
Q ss_pred CCEEEEEe------CCeEEEEECCCCceeeEecCC------CCCeEEEEEecCCCcEEEEEe---ccCeEEEEEeecceE
Q 001318 817 DSYVMSAS------GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEV 881 (1101)
Q Consensus 817 g~~la~~s------dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg~---~dg~v~vwd~~~~~~ 881 (1101)
++++++-. ++.|.+||+.+++.++++... ......++++++++..+++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98666543 378999999998877766432 235689999984455556555 688999999998887
Q ss_pred eeeecCcccCee-EEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC
Q 001318 882 KSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 959 (1101)
Q Consensus 882 ~~~l~~h~~~V~-~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d 959 (1101)
...+.+|..... ...++.+|..+.+.+.|++++.|.. .+..++|+|||+.|+++ ..
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence 777766533211 1456668888888888888776642 23679999999988875 33
Q ss_pred -CeEEEEEcCC---c-----eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCC
Q 001318 960 -TQLAIFETTK---L-----ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1030 (1101)
Q Consensus 960 -~~v~vwd~~~---~-----~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
..+..++... + +....+...++......++++++|.++++...++.|.+||..+|+...... .+.
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~~-- 289 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DEK-- 289 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CGG--
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CCc--
Confidence 3555554321 1 000001101223456789999999999998899999999986676543322 111
Q ss_pred CCCCccceEEEEeCCCCCEEEEEecCCcEEEE
Q 001318 1031 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 1031 ~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW 1062 (1101)
..++.+++|.+ +++++++.+..+.+.+|
T Consensus 290 ---~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 290 ---LSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ---GSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred ---eecCCeeEECC-CCcEEEEeCcccccccc
Confidence 13456899998 57787777755544333
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.28 E-value=6.7e-10 Score=119.87 Aligned_cols=228 Identities=11% Similarity=0.065 Sum_probs=149.2
Q ss_pred ceEEEEEcCCCc-eEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 740 KISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 740 ~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
-..+..|++++. .+++...++.|..|+... +...... ....+.+++++++|+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~~-----~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQVQRVT-----MDAPVSSVALRQSGG 66 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CCEEEEE-----CSSCEEEEEEBTTSS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------CcEEEEe-----CCCceEEEEECCCCC
Confidence 445788888654 445555578888887632 2211110 345688999999999
Q ss_pred EEEEEeCCeEEEEECCCCceeeEecC----CCCCeEEEEEecCCCcEEEEEecc---------CeEEEEEeec-ceEeee
Q 001318 819 YVMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRV-DEVKSK 884 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~d---------g~v~vwd~~~-~~~~~~ 884 (1101)
+++ +.++.|.+||..+++....... ....+..++++| +|+++++...+ ..-.||.+.. ++. ..
T Consensus 67 l~v-~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~ 143 (297)
T 3g4e_A 67 YVA-TIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KK 143 (297)
T ss_dssp EEE-EETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EE
T ss_pred EEE-EECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-EE
Confidence 544 4577899999987765433221 123478899999 88877654322 2345555543 333 22
Q ss_pred ecCcccCeeEEEEcCCCCEEE-EEeCCCceEEEeC--CCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCC
Q 001318 885 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSS--DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 960 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~-s~s~D~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~ 960 (1101)
+..+....+.++|+||++.|+ +.+.++.|.+|++ .++............... ..+..++++++|++.++. ..+
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETTT
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCCC
Confidence 333444568999999998764 5556788999987 444432222222221111 256789999999877774 567
Q ss_pred eEEEEEcCCceeeeeccCCCCCCCeeEEEEc-CCCCEEEEEEc
Q 001318 961 QLAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFL 1002 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~s-pdg~~l~s~s~ 1002 (1101)
.|..||..+++.+..+.. +...+++++|+ ||++.|+.++.
T Consensus 221 ~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 899999999998887763 35689999998 89887766654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-09 Score=121.37 Aligned_cols=255 Identities=11% Similarity=0.033 Sum_probs=165.6
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
.....++|+|+|+ |+++...++.|++||..+++.... ... ..... ++|+|++++|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999998 688888889999999988765431 112 22233 9999999999998
Q ss_pred EcCC--eEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE----ecCcccC
Q 001318 426 YSRH--IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI----FEGHEAP 498 (1101)
Q Consensus 426 ~~d~--~i~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~h~~~ 498 (1101)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 899999887654332212222 4567889999996553 33366688999999887764332 2222222
Q ss_pred e--EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 499 V--YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 499 v--~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
- ..++|++. ++.++++-..++.|+.|+.+.. ...+....... . ..+| ......-.....++++++|+++
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~-g---~~dg--~~~~~~~~~P~gia~d~dG~ly 337 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQK-T---VQDG--LREEALFAQPNGMTVDEDGNFY 337 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCC-S---CBCE--EGGGCBCSSEEEEEECTTCCEE
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCC-C---cCCC--cccccEeCCCeEEEEeCCCCEE
Confidence 2 27887542 3566777777889999987643 22111111000 0 0000 0000001235668888888877
Q ss_pred EEEe-CCCcEEEEECCCCceeEEEcCCC-------------CCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 577 LAAG-DDFSIKFWDMDSVQLLTSIDADG-------------GLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 577 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
++-. .++.|+.|++.++...... +.. .......++++++|.++++-..++.|+.+++
T Consensus 338 vad~~~~~~I~~~~~~~G~v~~~~-g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 338 IVDGFKGYCLRKLDILDGYVSTVA-GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTCEEEEEETTTTEEEEEE-ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCCEEEEEECCCCEEEEEe-CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 7777 7899999998777644333 220 1234678999999988888888889988765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-10 Score=127.57 Aligned_cols=172 Identities=12% Similarity=0.118 Sum_probs=134.0
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCc-----------eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
.+..+++++...++++|+...+.+|++++.+ ..... .+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 6889999999999999997788889976443 11222 2455 999999 57888888 889999999
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
+.+.........|..+|.++.+.+.. +++++.||.|.+||+..+.... .. ..|++++|||+| ..+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-----~~-------~~Vs~v~WSpkG-~~v 177 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-----LA-------QNVTSFDVTNSQ-LAV 177 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-----EE-------ESEEEEEECSSE-EEE
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-----cc-------CCceEEEEcCCc-eEE
Confidence 98766555666778889888877543 8889999999999999765321 11 378999999999 444
Q ss_pred EEeCCeEEEEEcCCcee--eeeccC----C---CCCCCeeEEEEcCCCCEEEE
Q 001318 956 VVHETQLAIFETTKLEC--VKQWVP----R---ESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 956 ~~~d~~v~vwd~~~~~~--~~~~~~----~---~h~~~i~~l~~spdg~~l~s 999 (1101)
...||.+++|+...+.+ .+.+.. . +|...|.++.|.+++.+|++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 47999999999988775 444421 1 46789999999999999886
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-09 Score=116.41 Aligned_cols=235 Identities=11% Similarity=0.075 Sum_probs=152.6
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
..-..+..|+|++..|+++...++.|..||..+++... + .....+.+++++++|+++++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEEE
Confidence 34567899999877788888889999999998875422 1 12457999999999996554
Q ss_pred EEcCCeEEEEEccCCceeeeeeeecc--ccCCeeEEEEcCCCCeEEEEEecC---------CCcEEEEeCCC-CceEEEe
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGD---------DKTIKVWDATN-GAKQYIF 492 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~--h~~~V~~~~~s~d~~~~~l~s~~~---------d~~i~iwd~~~-~~~~~~~ 492 (1101)
. ++.|.+||.++++.. .+..... ....++.++++|+|+ ++++... .....||.+.. ++.. .+
T Consensus 71 -~-~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~ 144 (297)
T 3g4e_A 71 -I-GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KY 144 (297)
T ss_dssp -E-TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EE
T ss_pred -E-CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE-EE
Confidence 3 567999999887643 2222211 124588999999998 4554321 12345555443 4333 33
Q ss_pred cCcccCeEEEeeeecCCccEE-EEEecCCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEc
Q 001318 493 EGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~~l-~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 570 (1101)
..+....+.++|+ ++++.+ ++.+.++.|..|+++.. ...... .+... + .........++++
T Consensus 145 ~~~~~~pngi~~s--pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--------~~~~~------~-~~~~~~p~g~~~d 207 (297)
T 3g4e_A 145 FDQVDISNGLDWS--LDHKIFYYIDSLSYSVDAFDYDLQTGQISNR--------RSVYK------L-EKEEQIPDGMCID 207 (297)
T ss_dssp EEEESBEEEEEEC--TTSCEEEEEEGGGTEEEEEEECTTTCCEEEE--------EEEEE------C-CGGGCEEEEEEEB
T ss_pred eeccccccceEEc--CCCCEEEEecCCCCcEEEEeccCCCCcccCc--------EEEEE------C-CCCCCCCCeeEEC
Confidence 3344456778885 455555 55566789999987421 111000 00000 0 0011234567778
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEeC
Q 001318 571 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN 625 (1101)
Q Consensus 571 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 625 (1101)
++|++.++....+.|.+||..+++.+..+.... ..+++++|. |+++.|++.+.
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcC
Confidence 888777777778889999999999988887553 358899998 88887777664
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-10 Score=125.92 Aligned_cols=273 Identities=8% Similarity=-0.051 Sum_probs=170.4
Q ss_pred ceeeccCCC----cceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeee----------cCceEEeeecc
Q 001318 703 PRITEESND----KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA----------SNAIHLLWKWQ 768 (1101)
Q Consensus 703 ~l~~~~~d~----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~----------~dg~i~iw~~~ 768 (1101)
..++...++ ++.+.|..+.+....... ...+ .+.|+||++.++++. .++.|.+||..
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v-------G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~ 104 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLG-------AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeC-------CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 344444444 566888776443332221 1223 799999999998886 35778888763
Q ss_pred ccccCCCCceeeeecCccccCCCccccccccCC-CC---CCCCeeEEEEecCCCEEEEEe---CCeEEE--EECCCCcee
Q 001318 769 RTERNSSGKATASVAPQLWQPPSGIMMTNDVTD-SN---PEEAVPCFALSKNDSYVMSAS---GGKISL--FNMMTFKTM 839 (1101)
Q Consensus 769 ~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~-~~---~~~~i~~~~~s~dg~~la~~s---dg~i~v--wd~~~~~~~ 839 (1101)
+++.+.....+ .. .......++++|||++++++. ++.|.+ +|..+ +
T Consensus 105 ----------------------T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v 159 (368)
T 1mda_H 105 ----------------------TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---D 159 (368)
T ss_dssp ----------------------TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---E
T ss_pred ----------------------CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---c
Confidence 33322211100 00 013456799999999999886 356888 99887 4
Q ss_pred eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-----ceEeee----ecCcccCeeEEEEcCCCCEEEEEeCC
Q 001318 840 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----DEVKSK----LKGHSKRITGLAFSHALNVLVSSGAD 910 (1101)
Q Consensus 840 ~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-----~~~~~~----l~~h~~~V~~l~~s~dg~~l~s~s~D 910 (1101)
.++..... ..+.|++.+.+++.+.||.+.+.|+.+ ++.... +.-...+. + ++++..++..+.
T Consensus 160 ~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~- 230 (368)
T 1mda_H 160 QLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA- 230 (368)
T ss_dssp EEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-
T ss_pred eEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-
Confidence 45532111 223453455666677889988889886 554321 11112333 3 666666666666
Q ss_pred CceEEEeCCCcccccceeeecCCC----CCCCCCCCeEEEEcCCCcEEEEE-e-C--------CeEEEEEcCCceeeeec
Q 001318 911 SQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHFLVV-H-E--------TQLAIFETTKLECVKQW 976 (1101)
Q Consensus 911 ~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~la~~-~-d--------~~v~vwd~~~~~~~~~~ 976 (1101)
+.|.+.|+.+........+..... ....+.....++|+|||+.+.++ . . +.+.++|+.+++.+..+
T Consensus 231 ~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i 310 (368)
T 1mda_H 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE
Confidence 899999987533211111111100 00000122337899999988874 3 2 36779999999999888
Q ss_pred cCCCCCCCeeEEEEcCCCCE-EEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 977 VPRESSAPITHATFSCDSQL-VYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 977 ~~~~h~~~i~~l~~spdg~~-l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
... .....++|+|||++ +++.. .++.|.|+|+.+++.+.++.
T Consensus 311 ~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 311 SNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred ECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 652 36899999999985 55555 48999999999999999887
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-05 Score=94.68 Aligned_cols=532 Identities=10% Similarity=-0.021 Sum_probs=269.4
Q ss_pred eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE-EcCCeEEEEEcc
Q 001318 359 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYH 437 (1101)
Q Consensus 359 ~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~ 437 (1101)
+|+++ ..+.|+..++++...... +....-..+..|+|++++..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34554 447899999886543221 111223468899999976666655 457889999987
Q ss_pred CCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEE-
Q 001318 438 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST- 516 (1101)
Q Consensus 438 ~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~- 516 (1101)
...... .+.........+++.+.++. ++++-...+.|.+.++........+.........+++.+. +|.++++-
T Consensus 68 g~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 653222 12222245778999877775 4566667788999997654432223233445667777542 33344433
Q ss_pred ecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCce
Q 001318 517 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQL 595 (1101)
Q Consensus 517 ~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 595 (1101)
+..+.|...+++........ ..... ...++++++++.|+.+. ..+.|...+++....
T Consensus 143 g~~~~I~r~~~dG~~~~~l~-~~~~~---------------------P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLV-PNVGR---------------------ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR 200 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEE-CSCSS---------------------EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCEEEEEeCCCCceEEEE-CCCCC---------------------cceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence 22456666666543322211 12222 33455555544555554 567888888865443
Q ss_pred eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcc
Q 001318 596 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATS 675 (1101)
Q Consensus 596 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1101)
..+... ......+++.. +..+++-...+.|...|..++.. ...+........ .+....
T Consensus 201 -~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~~~~p~--------~i~v~~--------- 258 (628)
T 4a0p_A 201 -EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGHLDYVM--------DILVFH--------- 258 (628)
T ss_dssp -EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECSCCSCC--------EEEEEC---------
T ss_pred -EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecCCCCcc--------eeeeee---------
Confidence 233211 22345677764 44455555578888888777632 222221110000 000000
Q ss_pred cccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEe
Q 001318 676 AGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILA 755 (1101)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 755 (1101)
.. .++ ..+........... +.+-.... ...|.--. .........++. .+ ...|+.
T Consensus 259 -~~---~q~-----~~n~C~~~ng~C~~---------~C~~~~~~---~~~C~C~~-g~~l~~d~~~C~--~~-~~~Ll~ 313 (628)
T 4a0p_A 259 -SS---RQS-----GWNECASSNGHCSH---------LCLAVPVG---GFVCGCPA-HYSLNADNRTCS--AP-TTFLLF 313 (628)
T ss_dssp -GG---GSC-----CCCTTTTTGGGCSS---------EEEEETTT---EEEEECST-TCEECTTSSCEE--CC-SSEEEE
T ss_pred -ec---ccc-----cceEeccCCCCcch---------hhhcCCCC---CeeEEcCC-CcEecccCCcCc--cc-cceeee
Confidence 00 000 00000000000000 11100000 00000000 000000011111 11 122222
Q ss_pred eecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEC
Q 001318 756 LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM 833 (1101)
Q Consensus 756 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~ 833 (1101)
+. ...|+-..+.. ........... .-..+.+++|.+.+..|+.+. .+.|+.++.
T Consensus 314 s~-~~~i~~i~l~~--------------------~~~~~~~l~~~---~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~ 369 (628)
T 4a0p_A 314 SQ-KSAINRMVIDE--------------------QQSPDIILPIH---SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 369 (628)
T ss_dssp EE-TTEEEEECCCT--------------------TCCCCEECCCT---TCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ec-cceEEEEeccc--------------------ccCceEEEEeh---hcCCceEEEEecCCCeEEEEecCcceEEEEEc
Confidence 22 22333222210 00000000011 234578899999888888876 578999987
Q ss_pred CCCceeeEecC------CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-cCcccCeeEEEEcC-CCCEEE
Q 001318 834 MTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSH-ALNVLV 905 (1101)
Q Consensus 834 ~~~~~~~~~~~------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~-dg~~l~ 905 (1101)
........+.. ....+..+++....+++..+-+..+.|.+.++. |+....+ ........+|++.| .|.++.
T Consensus 370 ~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~ 448 (628)
T 4a0p_A 370 DGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYF 448 (628)
T ss_dssp TSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred CCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEE
Confidence 64333333332 234688999998445555666677899999875 4444443 33345678999999 455444
Q ss_pred EEeCCC--ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCceeeeeccCCCC
Q 001318 906 SSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRES 981 (1101)
Q Consensus 906 s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~~~~~~~~~h 981 (1101)
+-.... .|...+++.... ..+.. ... .....+++++++..|..+ ..+.|..+++.... .+.+.. ..
T Consensus 449 tD~g~~~~~I~r~~~dG~~~--~~l~~---~~l---~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~-~~ 518 (628)
T 4a0p_A 449 TNLQERSPKIERAALDGTER--EVLFF---SGL---SKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLED-SN 518 (628)
T ss_dssp EEEETTEEEEEEEETTSCSC--EEEEC---SSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-SS
T ss_pred eecCCCCCeEEEEeCCCCCc--EEEEe---ccC---CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEc-CC
Confidence 433222 455556665321 11111 111 245889999987777764 45789999986543 333321 22
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeec
Q 001318 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 982 ~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1020 (1101)
.....+|++.. +.++++-...+.|...|..+|+....+
T Consensus 519 ~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 519 ILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp CSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred CCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 34567888754 455555556678888888877654443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-09 Score=128.54 Aligned_cols=202 Identities=12% Similarity=0.101 Sum_probs=136.0
Q ss_pred EEEEEecCCCcEEEEEeccC-------------------eEEEEEeecceEeeeecC--cc-------cCeeEEEEcCCC
Q 001318 850 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 901 (1101)
Q Consensus 850 ~~l~~sp~d~~~lasg~~dg-------------------~v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg 901 (1101)
..++++| ++.+|+++..++ .|..+|..+|+.+-.++. |. ....-+....||
T Consensus 246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 3578999 677888777664 599999999998876543 21 112223334477
Q ss_pred ---CEEEEEeCCCceEEEeCCCcccccceeeecC--------CCC--------------------CCCCCCCeEEEEcCC
Q 001318 902 ---NVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--------TGR--------------------TPTAQSDTRVQFHQD 950 (1101)
Q Consensus 902 ---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--------~~~--------------------~~~~~~v~~~~~s~d 950 (1101)
..|+.++.+|.|.++|..+|+.......... .+. .. ...-..++|+|+
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G-~~~w~~~a~dp~ 403 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG-AHNWHPMSFNPQ 403 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC-SSCSSCCEEETT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccc-ccCCCCceEcCC
Confidence 6899999999999999999876432211100 000 00 000125789999
Q ss_pred CcEEEEE-eC-------------------------------------------CeEEEEEcCCceeeeeccCCCCCCCee
Q 001318 951 QIHFLVV-HE-------------------------------------------TQLAIFETTKLECVKQWVPRESSAPIT 986 (1101)
Q Consensus 951 g~~la~~-~d-------------------------------------------~~v~vwd~~~~~~~~~~~~~~h~~~i~ 986 (1101)
+.++++. .+ +.|..||+.+++.+-.+.. ..++.
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~ 480 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWN 480 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCC
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCc
Confidence 8888773 31 6799999999998776642 33455
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEec----------
Q 001318 987 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGLS---------- 1055 (1101)
Q Consensus 987 ~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~~---------- 1055 (1101)
...++.++.+++.++.||.+++||..+|+.+.++. .+.+ +...-+.|.. +|+ ++++.+.
T Consensus 481 ~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~ 550 (677)
T 1kb0_A 481 GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP----TGTG-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAAR 550 (677)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCC
T ss_pred CcceEeCCCEEEEECCCCcEEEEECCCCceeeeee----CCCC-----cccCCEEEEe-CCEEEEEEeccCCcccccccc
Confidence 66677788899999999999999999999999887 3333 2222456665 455 4444333
Q ss_pred ------CCcEEEEeccC
Q 001318 1056 ------DGGVHVFEPLE 1066 (1101)
Q Consensus 1056 ------dg~v~vW~~~~ 1066 (1101)
.+.+.+|.+..
T Consensus 551 ~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 551 ATERQGPGTVYTFVVGG 567 (677)
T ss_dssp SCSCCCCCEEEEEEETC
T ss_pred ccccCCCCeEEEEeccc
Confidence 36888888864
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-09 Score=121.02 Aligned_cols=250 Identities=13% Similarity=0.051 Sum_probs=148.4
Q ss_pred CCcEEEEEecCCCeEEEEEe--cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 346 SSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
..+..++++|+|+ ++++.. .++.++||.+.+++.. ++.-|. ....+|-..+.+++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6789999999998 466653 2343666666544322 222111 01235667899999999998777
Q ss_pred EEEc-----CCeEEEEEccCCceeeeeeeec----cccCCeeEEEEcCCCCeEEEEEec---CCCcEEEEeCCCCceEEE
Q 001318 424 VAYS-----RHIVQIYSYHGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNGAKQYI 491 (1101)
Q Consensus 424 s~~~-----d~~i~iwd~~~~~~~~~~~~l~----~h~~~V~~~~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~ 491 (1101)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999998755432 221 23345789999987654 456655 678999999999988777
Q ss_pred ecCcccCeE-EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecc-----------
Q 001318 492 FEGHEAPVY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF----------- 559 (1101)
Q Consensus 492 ~~~h~~~v~-~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~----------- 559 (1101)
+.+|..... ...+ ..+|..+.+.+.++.++.|.. .+..++++|+|+.++...
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 755421100 0011 111222333333333332210 122233333332221110
Q ss_pred ---------------------ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC
Q 001318 560 ---------------------RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 618 (1101)
Q Consensus 560 ---------------------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 618 (1101)
.......++++++|+.+++...++.|.+||..+++...... ........+++|.++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEEECTTSC
T ss_pred HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeEECCCCc
Confidence 00123347888888888888889999999986666443333 21233467899999988
Q ss_pred EEEEEeCCCc
Q 001318 619 LLAVSTNDNG 628 (1101)
Q Consensus 619 ~l~~~~~dg~ 628 (1101)
++++.+..+.
T Consensus 304 l~v~~~~~~~ 313 (343)
T 2qe8_A 304 LYFDCNQLHH 313 (343)
T ss_dssp EEEEECCGGG
T ss_pred EEEEeCcccc
Confidence 7777665433
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=6e-09 Score=113.96 Aligned_cols=225 Identities=11% Similarity=-0.041 Sum_probs=145.5
Q ss_pred eEEEEEcCCCce-EEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 741 ISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 741 i~~l~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
..+.+|++++.. +++...++.|..|+... +...... ....+.+++++++|++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~~-----~~~~v~~i~~~~dg~l 103 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS----------------------GRKTVHA-----LPFMGSALAKISDSKQ 103 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT----------------------TEEEEEE-----CSSCEEEEEEEETTEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC----------------------CcEEEEE-----CCCcceEEEEeCCCeE
Confidence 457789997554 45555578888887532 2211110 2346889999999987
Q ss_pred EEEEeCCeEEEEECCCCceeeEecC---C-CCCeEEEEEecCCCcEEEEEec------cCeEEEEEeecceEeeeecCcc
Q 001318 820 VMSASGGKISLFNMMTFKTMATFMP---P-PPAATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHS 889 (1101)
Q Consensus 820 la~~sdg~i~vwd~~~~~~~~~~~~---~-~~~i~~l~~sp~d~~~lasg~~------dg~v~vwd~~~~~~~~~l~~h~ 889 (1101)
+++. ++.|.+||..+++....... . ...+..++++| +|+++++... .+.|+.++ +++... +..+.
T Consensus 104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~ 178 (326)
T 2ghs_A 104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADI 178 (326)
T ss_dssp EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEE
T ss_pred EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCC
Confidence 7765 55699999988775433221 1 23588999999 7877665432 24555555 555433 33334
Q ss_pred cCeeEEEEcCCCCEEEEE-eCCCceEEEeCC--Cc-ccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEE
Q 001318 890 KRITGLAFSHALNVLVSS-GADSQLCVWSSD--GW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAI 964 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~-s~D~~v~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~v 964 (1101)
.....++|+|||+.|+.+ +.++.|.+|+++ ++ ............... ..+..++++++|.+.++. .++.|.+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 457899999999877554 557889999986 54 322212222221111 245789999999877774 5689999
Q ss_pred EEcCCceeeeeccCCCCCCCeeEEEEc-CCCCEEEEEEcC
Q 001318 965 FETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLD 1003 (1101)
Q Consensus 965 wd~~~~~~~~~~~~~~h~~~i~~l~~s-pdg~~l~s~s~d 1003 (1101)
||. +++.+..+. .+...+++++|+ +|++.|++++..
T Consensus 256 ~d~-~g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYE--VPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEE--CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEE--CCCCCcEEEEEecCCCCEEEEEecC
Confidence 998 566666654 234579999998 898877655543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-09 Score=132.40 Aligned_cols=245 Identities=14% Similarity=0.116 Sum_probs=154.5
Q ss_pred CCCCcEEEEEecCCCeEEEEEecC----CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
|...+..++|||||++|+.+.+.. ..|+|||+.+++.+.. . +. ......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~~--~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------LK--DVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------EE--EEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------cC--CceeccEEEe-CC
Confidence 456788999999999865555443 4799999999986542 1 11 0113568999 99
Q ss_pred CeEEEEEcCC-------------eEEEEEccCCcee-eeeeeecc-ccCCeeEEEEcCCCCeEEEEEec---CCCcEEEE
Q 001318 420 SLFGVAYSRH-------------IVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG---DDKTIKVW 481 (1101)
Q Consensus 420 ~~las~~~d~-------------~i~iwd~~~~~~~-~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~---~d~~i~iw 481 (1101)
+.|+.++.+. .|++|++.++..- ........ |...+..+.|+|||+.+ +++.+ .+..|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999998874 3999999876531 12223334 55567899999999963 33333 23589999
Q ss_pred eCCCCc-eEEEecCcccCeEEEeeeecCCccEEEEEecC---CcEEEEecCCCCc--eeeecCCCCceeEEEEccCCceE
Q 001318 482 DATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 482 d~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~ 555 (1101)
|+.++. ....+..+....... +.+.+ +.+++....+ +.|..||+.+... ...+..+...
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~------------- 329 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ------------- 329 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-------------
T ss_pred ECCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-------------
Confidence 998774 445566566655544 33333 2455555443 5788888876543 1222222221
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC----Cc
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----NG 628 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~ 628 (1101)
.+ .++++++.|+.... ++ .|++|++..+ ....+.... ...+..+.++++++.++....+ ++
T Consensus 330 -------~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 330 -------VL---TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp -------CE---EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred -------EE---EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCE
Confidence 11 55566666766554 43 6899998754 445554322 2235566777888777666544 78
Q ss_pred EEEEEecCc
Q 001318 629 IKILATSDG 637 (1101)
Q Consensus 629 i~iw~~~~~ 637 (1101)
+..||+.++
T Consensus 398 l~~~d~~~g 406 (693)
T 3iuj_A 398 LYRFEPKSG 406 (693)
T ss_dssp EEEECTTTC
T ss_pred EEEEECCCC
Confidence 999998766
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=9.2e-09 Score=112.46 Aligned_cols=228 Identities=11% Similarity=0.018 Sum_probs=146.7
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 426 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 426 (1101)
-..+.+|+|++..+++++..++.|.+||..+++... +. +...|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence 356789999987788888889999999998875432 11 13579999999999987764
Q ss_pred cCCeEEEEEccCCceeeeeeeec-c-ccCCeeEEEEcCCCCeEEEEEecC------CCcEEEEeCCCCceEEEecCcccC
Q 001318 427 SRHIVQIYSYHGGDEVRQHLEID-A-HVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 427 ~d~~i~iwd~~~~~~~~~~~~l~-~-h~~~V~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
. ..|.+||..+++... ..... + ....+++++++++|+ ++++... .+.|..++ +++.. .+..+...
T Consensus 108 ~-~gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 D-DGLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp T-TEEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred C-CCEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 4 449999998876432 21211 1 124689999999998 4544432 23455555 55543 33233345
Q ss_pred eEEEeeeecCCccEEE-EEecCCcEEEEecC--CC-Cce--eeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 499 VYSVCPHHKENIQFIF-STALDGKIKAWLYD--NL-GSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~-s~~~dg~i~~wd~~--~~-~~~--~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
...++|+ ++++.++ +.+.++.|.+||++ ++ ... ..+. .+.. .......++++++
T Consensus 181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~---------~~~~---------~~~~p~gi~~d~~ 240 (326)
T 2ghs_A 181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI---------DSTG---------IKGGMDGSVCDAE 240 (326)
T ss_dssp EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE---------ECTT---------SSSEEEEEEECTT
T ss_pred cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE---------ECCC---------CCCCCCeeEECCC
Confidence 6778874 5556554 44557899999986 32 110 0000 0000 0113345677777
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEeCC
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND 626 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d 626 (1101)
|++.++...++.|.+|+. +++.+..+.... ..+.+++|+ ++++.|++++..
T Consensus 241 G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEecC
Confidence 777777667789999998 677777776443 358899998 888877666543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-10 Score=123.55 Aligned_cols=187 Identities=12% Similarity=0.087 Sum_probs=134.3
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccc--cC-CCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTE--RN-SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~--~~-~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
..+..+++++....+++++.+ .+.+|++.... .. ..+. .+.. .. . .+.. |+.++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~-----------~~~~--~~--~---~lp~-V~~l~f-- 95 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTP-----------LTFK--WE--K---EIPD-VIFVCF-- 95 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCC-----------CCCS--EE--E---ECTT-EEEEEE--
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccccc-----------ccce--EE--e---eCCC-eeEEEE--
Confidence 368899999999988888887 45559875432 00 0000 0000 00 0 1445 999999
Q ss_pred CCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEE
Q 001318 816 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 895 (1101)
Q Consensus 816 dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 895 (1101)
|+++|+++.++.|++||+.+.........+...+..+.+.+ . -+|+++.||.|.+||+.++.... +...|+++
T Consensus 96 d~~~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v 168 (388)
T 1xip_A 96 HGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSF 168 (388)
T ss_dssp ETTEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEE
T ss_pred CCCEEEEEcCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEE
Confidence 99999999889999999988776666667777888888776 3 28889999999999999876543 45689999
Q ss_pred EEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecC---CCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 896 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP---TGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 896 ~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
+|||+| ++.|..||++++|+.++++......+..+ ..+......|.++.|.+++.++++
T Consensus 169 ~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 169 DVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999999 77899999999999887653111112111 110111257999999999999998
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-09 Score=128.08 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=59.4
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcc-cCeeEEEEcCCCCEE
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL 904 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l 904 (1101)
|.|..||+.+++.+.++.. ...+....++. ++.++++++.||.+++||..+++.+..+.... ....-+.|..+|+.+
T Consensus 457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cEEEEEeCCCCcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 6799999999998887763 33344455666 66788889999999999999999998886433 333456777888755
Q ss_pred EEE
Q 001318 905 VSS 907 (1101)
Q Consensus 905 ~s~ 907 (1101)
+..
T Consensus 535 v~~ 537 (677)
T 1kb0_A 535 VSV 537 (677)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-09 Score=128.33 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=125.6
Q ss_pred EEEEecCCCcEEEEEeccCe-------------------EEEEEeecceEeeeecC--cc-------cCeeEEEEcCCCC
Q 001318 851 FLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHALN 902 (1101)
Q Consensus 851 ~l~~sp~d~~~lasg~~dg~-------------------v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~ 902 (1101)
.++++| +..+|+++..++. |..||..+|+.+-.++. |. .++.-.....+|+
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 578999 7778888887764 99999999998876653 21 1122222223665
Q ss_pred ---EEEEEeCCCceEEEeCCCcccccceeeec------------------------CCCCC----C---CCCCCeEEEEc
Q 001318 903 ---VLVSSGADSQLCVWSSDGWEKQKNRFLQI------------------------PTGRT----P---TAQSDTRVQFH 948 (1101)
Q Consensus 903 ---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------------------------~~~~~----~---~~~~v~~~~~s 948 (1101)
.|+.++.+|.+.++|..+|+......... ..+.. + ....-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999987642111000 00000 0 00011247899
Q ss_pred CCCcEEEEE-e---------------------------------------------CCeEEEEEcCCceeeeeccCCCCC
Q 001318 949 QDQIHFLVV-H---------------------------------------------ETQLAIFETTKLECVKQWVPRESS 982 (1101)
Q Consensus 949 ~dg~~la~~-~---------------------------------------------d~~v~vwd~~~~~~~~~~~~~~h~ 982 (1101)
|+..++++. . ++.|..||+.+++.+-.+.. .
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~ 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---V 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---S
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---C
Confidence 988877763 2 36799999999998776643 2
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe
Q 001318 983 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL 1054 (1101)
Q Consensus 983 ~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~ 1054 (1101)
.++..-.++..+.++++++.||.|+.||.++|+.+.+++ ++.+ +...-+.|.. ||+ |+++.+
T Consensus 475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~ty~~-~G~qyv~~~~ 537 (689)
T 1yiq_A 475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP----AASG-----VMAAPVTYSV-DGEQYVTFMA 537 (689)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEE
T ss_pred CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee----CCCC-----cccCceEEEE-CCEEEEEEEe
Confidence 234444666788899999999999999999999998887 4433 2222466666 455 555443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.3e-09 Score=125.46 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=58.8
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccC-eeEEEEcCCCCEE
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVL 904 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l 904 (1101)
|.|..||+.+++.+..++.+.. ...-.++. .+.++++|+.||.|+.||.++|+.+.+++...+. ..-+.|+.||+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 6799999999999888764432 33335555 6678889999999999999999999888654332 2457788888754
Q ss_pred E
Q 001318 905 V 905 (1101)
Q Consensus 905 ~ 905 (1101)
+
T Consensus 533 v 533 (689)
T 1yiq_A 533 V 533 (689)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-08 Score=110.65 Aligned_cols=158 Identities=8% Similarity=0.037 Sum_probs=100.4
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccc-------cCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 490 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-------~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 490 (1101)
++..|.+++.++.|..+|.++|+.+-... +... ...+.+.-.. ++. .++.++.++.|..+|..+|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVS-LAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeec-CccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence 47788888889999999999998664321 2111 1223222222 334 46778889999999999999987
Q ss_pred EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEc
Q 001318 491 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570 (1101)
Q Consensus 491 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 570 (1101)
.............. . + ..++.++.++.|..+|..+++............ . ..... ...+.
T Consensus 128 ~~~~~~~~~~~p~~--~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-~--~~~~~-------------~~~~~ 187 (376)
T 3q7m_A 128 QTKVAGEALSRPVV--S-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-S--LRGES-------------APTTA 187 (376)
T ss_dssp EEECSSCCCSCCEE--E-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCC-------------CCEEE
T ss_pred EEeCCCceEcCCEE--E-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce-e--ecCCC-------------CcEEE
Confidence 76543322221222 1 2 478888899999999999888776655432110 0 00000 00011
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 001318 571 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 571 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
+..++++..++.|..+|..+++.+.....
T Consensus 188 --~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 188 --FGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp --TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred --CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 24577788899999999999998877753
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.5e-09 Score=127.96 Aligned_cols=242 Identities=12% Similarity=0.092 Sum_probs=156.3
Q ss_pred cccceEEEEEcCCCceEEeeec-----CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 737 RATKISRLIFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
+...+..++|||||++|+.+.. ...|++||+ .+|..+...+ .......+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl----------------------~tg~~~~~~~----~~~k~~~~ 180 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV----------------------ESKQPLETPL----KDVKFSGI 180 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEET----------------------TTCSEEEEEE----EEEESCCC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEEC----------------------CCCCCCcccc----CCceeccE
Confidence 4457889999999998875432 256777666 4444322111 11113567
Q ss_pred EEecCCCEEEEEe-CC-------------eEEEEECCCCce--eeEec--C-CCCCeEEEEEecCCCcEEEEEec----c
Q 001318 812 ALSKNDSYVMSAS-GG-------------KISLFNMMTFKT--MATFM--P-PPPAATFLAFHPQDNNIIAIGMD----D 868 (1101)
Q Consensus 812 ~~s~dg~~la~~s-dg-------------~i~vwd~~~~~~--~~~~~--~-~~~~i~~l~~sp~d~~~lasg~~----d 868 (1101)
+|+ ||+.|+.++ +. .|++|++.+... ...+. . +......+.||| |+++|+.... +
T Consensus 181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSG 258 (693)
T ss_dssp EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSC
T ss_pred EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCC
Confidence 899 999998887 53 399999987643 22232 2 344578899999 8887765443 2
Q ss_pred CeEEEEEeecce-EeeeecCcccCeeEEEEcCCCCEEEE-EeCC---CceEEEeCCCcccccceeeecCCCCCCCCCCCe
Q 001318 869 SSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVS-SGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 943 (1101)
Q Consensus 869 g~v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~l~s-~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 943 (1101)
..|+++|+.++. ....+..+....... |+++|..|+. ...| +.|.+|++.++.......+. . +.. .+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~-~~~---~~~ 331 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--P-ERQ---QVL 331 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--C-CCS---SCE
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--c-CCC---CEE
Confidence 489999987763 345566666666655 6666666554 4333 56889999886542222221 1 111 233
Q ss_pred EEEEcCCCcEEEE-E-eCC--eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC----CeEEEEEcCCce
Q 001318 944 RVQFHQDQIHFLV-V-HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLK 1015 (1101)
Q Consensus 944 ~~~~s~dg~~la~-~-~d~--~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d----g~v~vwd~~~~~ 1015 (1101)
.|++++++|+. . .++ .|++||+.++.. ..+.. .+...+..+.+++|++.|+....+ ++|+.||+.+++
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 89999998887 3 444 689999986543 33332 224567788889999877766555 789999998886
Q ss_pred ee
Q 001318 1016 LR 1017 (1101)
Q Consensus 1016 ~~ 1017 (1101)
..
T Consensus 408 ~~ 409 (693)
T 3iuj_A 408 IS 409 (693)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.14 E-value=5e-09 Score=113.53 Aligned_cols=228 Identities=11% Similarity=0.037 Sum_probs=149.9
Q ss_pred cceEEEEEcCCCce-EEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001318 739 TKISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 817 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg 817 (1101)
......+|+++|+. +++...++.|..|+.. +.... +.. ....+..++++++|
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----------------------g~~~~--~~~--~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-----------------------GTVDV--LLD--ATAFTNGNAVDAQQ 97 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-----------------------SCEEE--EEE--SCSCEEEEEECTTS
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-----------------------CCEEE--EeC--CCCccceeeECCCC
Confidence 45678899999984 4555567888888641 11100 000 34568899999999
Q ss_pred CEEEEEe-CCeEEEEECCCCceeeEec---CC-CCCeEEEEEecCCCcEEEE----Eec-------------cCeEEEEE
Q 001318 818 SYVMSAS-GGKISLFNMMTFKTMATFM---PP-PPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIYN 875 (1101)
Q Consensus 818 ~~la~~s-dg~i~vwd~~~~~~~~~~~---~~-~~~i~~l~~sp~d~~~las----g~~-------------dg~v~vwd 875 (1101)
+++++.. ++.|.+|+.. ++...... +. ...+..+++++ +|+++++ |.. .+.|+.||
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 9776655 5789999986 54322211 11 23467899999 8888876 332 25677788
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCC------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
..+++..... .....+.++|+||++.|+.+... +.|.+|++..+............ ......+++++
T Consensus 176 ~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d~ 248 (305)
T 3dr2_A 176 PDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVDR 248 (305)
T ss_dssp SSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEECT
T ss_pred CCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEECC
Confidence 7666544333 44557889999999988777665 68999998764321111111111 12456789999
Q ss_pred CCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEE
Q 001318 950 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1007 (1101)
Q Consensus 950 dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~ 1007 (1101)
+|++.++. .+.|.+|+.. ++.+..+... ..+.+++|++|++.|+.++.++..+
T Consensus 249 ~G~lwv~~-~~gv~~~~~~-g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 249 GGWLWSSS-GTGVCVFDSD-GQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TSCEEECC-SSEEEEECTT-SCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCEEEec-CCcEEEECCC-CCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence 99955555 4569999984 6666665532 2589999999999888887765433
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-08 Score=108.53 Aligned_cols=230 Identities=12% Similarity=0.130 Sum_probs=148.0
Q ss_pred cCCCEEEEEe--CCeEEEEECCCC----ceeeEecC-------CCCCeEEEEEecCCCcEEEEEecc------CeEEEEE
Q 001318 815 KNDSYVMSAS--GGKISLFNMMTF----KTMATFMP-------PPPAATFLAFHPQDNNIIAIGMDD------SSIQIYN 875 (1101)
Q Consensus 815 ~dg~~la~~s--dg~i~vwd~~~~----~~~~~~~~-------~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd 875 (1101)
.++++|++.+ ++.|+++|+.+. +..++++. ....-..+..+| ++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 8899998887 688999999755 55555531 112345678889 77 66666555 7899999
Q ss_pred eecceEeeeecCccc---CeeEEEEcCCCCEEEEEe-------------------CCCceEEEeCCCcccccceeeecCC
Q 001318 876 VRVDEVKSKLKGHSK---RITGLAFSHALNVLVSSG-------------------ADSQLCVWSSDGWEKQKNRFLQIPT 933 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~---~V~~l~~s~dg~~l~s~s-------------------~D~~v~iwd~~~~~~~~~~~~~~~~ 933 (1101)
..+++.+.++..-.+ --..+.|+|+++.+++.. .+.+|.+||+.+++... .+....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--tI~vg~ 248 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--SLTLGE 248 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--EEESCT
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--EEecCC
Confidence 999999998863222 234588999999999885 36789999999864322 222210
Q ss_pred CCCCCCCCCeEEEE--cCCCcEEEEE-------eCCeEEEEEcCCceee--eeccCCC----------------CCCCee
Q 001318 934 GRTPTAQSDTRVQF--HQDQIHFLVV-------HETQLAIFETTKLECV--KQWVPRE----------------SSAPIT 986 (1101)
Q Consensus 934 ~~~~~~~~v~~~~~--s~dg~~la~~-------~d~~v~vwd~~~~~~~--~~~~~~~----------------h~~~i~ 986 (1101)
.. .....+.| +|+|+++.++ .+++|.+|..+.++.. ..+.... -...+.
T Consensus 249 ~g----~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 249 EN----RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp TE----EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred CC----CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 00 12345555 9999988873 3457776655443211 1110000 024578
Q ss_pred EEEEcCCCCEEEEEEc-CCeEEEEEcC---CceeeeecCCCccc-----CCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001318 987 HATFSCDSQLVYACFL-DATVCVFSAA---NLKLRCRINPSAYL-----PAGVSSSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 987 ~l~~spdg~~l~s~s~-dg~v~vwd~~---~~~~~~~~~~~~~~-----~~~~~~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
.+.+|+||++|.++.. .+.|.+||+. +.+++.++...... +.|. .....|-.++++| ||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEEEc
Confidence 9999999999887764 6789999986 34566655532110 0010 0001355799999 788888887
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-05 Score=92.02 Aligned_cols=525 Identities=9% Similarity=0.016 Sum_probs=253.8
Q ss_pred cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE-cCCeEEEEEccCCceeee
Q 001318 366 NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQ 444 (1101)
Q Consensus 366 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~ 444 (1101)
....|+..|+........ .+...-..+..++|++.+..|..+. ..+.|..+++++......
T Consensus 16 ~~~~I~~i~~~~~~~~~~------------------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~ 77 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN 77 (619)
T ss_dssp CSSBEEEECCC---------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE
T ss_pred ccccEEEEeCCCCcceEE------------------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE
Confidence 347888888875421110 1222344688999999777776654 467899999876532111
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEe-cCCcEE
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIK 523 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~dg~i~ 523 (1101)
.+..-......+++.+.++. ++++-...+.|.+.++........+.........+++.+. +|.++++-- ..+.|.
T Consensus 78 --v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~ 153 (619)
T 3s94_A 78 --VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIE 153 (619)
T ss_dssp --EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEE
T ss_pred --EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEE
Confidence 22222356889999997765 5666677889999997654433333233344556676432 233334331 234555
Q ss_pred EEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEcCC
Q 001318 524 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDAD 602 (1101)
Q Consensus 524 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 602 (1101)
..+++............... ..+++++++..|+.+ ...+.|...+++..........
T Consensus 154 r~~~dG~~~~~l~~~~~~~P---------------------~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~- 211 (619)
T 3s94_A 154 RAGMDGSSRFIIINSEIYWP---------------------NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG- 211 (619)
T ss_dssp EEETTSCSCEEEECSSCSSE---------------------EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------
T ss_pred EEECCCCceEEEEeCCCCCC---------------------cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC-
Confidence 55554322222221122223 345555544445554 3566788888865443332221
Q ss_pred CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 603 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 603 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
.......+++..+ ...++-...+.|...|..++.. ...+......... +..+.+..
T Consensus 212 -~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~-~~~i~~~~~~p~~-----i~v~~~~~---------------- 267 (619)
T 3s94_A 212 -SLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG-LREIHSDIFSPMD-----IHAFSQQR---------------- 267 (619)
T ss_dssp -----CCCEEESSS-EEEEECTTTCSEEEEESSSCCC-CEECCSCCCCCSE-----EEECCGGG----------------
T ss_pred -CCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc-cEEEecCCCCCcE-----EEEEcccc----------------
Confidence 1123456787665 4444555678898888877733 2222111000000 00000000
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccc---cccCccccccceEEEEEcCCCceEEeeecC
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS---LRLPENLRATKISRLIFTNSGNAILALASN 759 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~---~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 759 (1101)
++...-.+. ........+..-..... ...|.- +.+. ....++. .....+|+. +..
T Consensus 268 qp~~~n~C~----~~ng~Cs~lCl~~~~~~-----------~~~C~C~~g~~l~----~d~~~C~--~~~~~~Ll~-~~~ 325 (619)
T 3s94_A 268 QPNATNPCG----IDNGGCSHLCLMSPVKP-----------FYQCACPTGVKLL----ENGKTCK--DGATELLLL-ARR 325 (619)
T ss_dssp SCCCCCTTT----TTGGGCSSEEEECSSTT-----------SEEEECCTTCCBC----TTSSCBC--SSCSEEEEE-EES
T ss_pred CCCcccccc----CCCCcccceEECCCCCC-----------CceEeCCchheec----ccCcccC--CCCceEEEE-Ecc
Confidence 000000000 00000011111000000 000000 0000 0000000 001112222 223
Q ss_pred ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCc
Q 001318 760 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK 837 (1101)
Q Consensus 760 g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~ 837 (1101)
+.|+..++.... .......+. .-..+.+++|.+.+..|+.+. .+.|+.+++....
T Consensus 326 ~~i~~i~l~~~~--------------------~~~~~~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~ 382 (619)
T 3s94_A 326 TDLRRISLDTPD--------------------FTDIVLQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG 382 (619)
T ss_dssp SCEEEEESSSTT--------------------CCCEECCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cceEEEecCCCc--------------------cceeEEecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc
Confidence 344443332110 000010111 234578899999777777776 5889999987644
Q ss_pred eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-cCcccCeeEEEEcCCCCEEEEEeC--CCceE
Q 001318 838 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGA--DSQLC 914 (1101)
Q Consensus 838 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~--D~~v~ 914 (1101)
....+...-.....+++...+++++.+-...+.|.+.++.... ...+ ...-..-.+|++.|....|..+.. ...|.
T Consensus 383 ~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~ 461 (619)
T 3s94_A 383 SQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIE 461 (619)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred cEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEE
Confidence 3333443345678899997456666665667899999876432 3333 223345789999997445554443 35566
Q ss_pred EEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC
Q 001318 915 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSC 992 (1101)
Q Consensus 915 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp 992 (1101)
..+++..... ... .+.. .....+++++++..|..+ ..+.|..+++.......... ..-.....|++..
T Consensus 462 r~~~dG~~~~--~l~---~~~l---~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~--~~l~~P~glav~~ 531 (619)
T 3s94_A 462 RAALDGSDRV--VLV---NTSL---GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE--DKIPHIFGFTLLG 531 (619)
T ss_dssp EEETTSCSCE--EEE---CSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEE--CCCCSSCCEEEET
T ss_pred EEccCCCccE--EEE---eCCC---CCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEec--cCCCCcEEEEEEC
Confidence 6666653211 111 1111 245789999977777664 55789999986543322221 1123345667654
Q ss_pred CCCEEEEEEcCCeEEEEEcCCce
Q 001318 993 DSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 993 dg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
+ .+.++-...+.|...|..+|.
T Consensus 532 ~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 532 D-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp T-EEEEECTTSSCEEEEESSSCC
T ss_pred C-EEEEeecCCCeEEEEEcCCCc
Confidence 3 344444455678777877773
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-09 Score=117.83 Aligned_cols=221 Identities=6% Similarity=-0.074 Sum_probs=144.6
Q ss_pred eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe----------ccCeEEEEEeecceEeeeecCc-------c
Q 001318 827 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKSKLKGH-------S 889 (1101)
Q Consensus 827 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~----------~dg~v~vwd~~~~~~~~~l~~h-------~ 889 (1101)
+|.++|..+++.+.++.....+ .++++| |+++++++. .++.|.+||..+++.+.++... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 8889999999999998755555 799999 888888776 4789999999999999887533 1
Q ss_pred cCeeEEEEcCCCCEEEEEeC--CCceEE--EeCCCcccccceeeecCCC-CCCCCCCCeEEEE-----------------
Q 001318 890 KRITGLAFSHALNVLVSSGA--DSQLCV--WSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQF----------------- 947 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~--D~~v~i--wd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~----------------- 947 (1101)
..-..++|+|||++|+++.. +..|.+ +|+.+ . . .+....+ +....+.-..+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v-~--~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--D-Q--LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--E-E--EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--c-e--EEECCCceEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 23567999999999998864 456888 88865 1 0 1111000 0000000011112
Q ss_pred --------------------cCCCcE-EEEEeCCeEEEEEcCCc--eeeeeccCCC-----C---CCCeeEEEEcCCCCE
Q 001318 948 --------------------HQDQIH-FLVVHETQLAIFETTKL--ECVKQWVPRE-----S---SAPITHATFSCDSQL 996 (1101)
Q Consensus 948 --------------------s~dg~~-la~~~d~~v~vwd~~~~--~~~~~~~~~~-----h---~~~i~~l~~spdg~~ 996 (1101)
++++.. ++++. +.+.+.|..+. +.+..+.... + ......++|+||++.
T Consensus 199 ~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred CCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 223332 33344 67777777543 2333332110 0 112223789999998
Q ss_pred EEEEEc-C--------CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-cCCcEEEEecc
Q 001318 997 VYACFL-D--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1065 (1101)
Q Consensus 997 l~s~s~-d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~-~dg~v~vW~~~ 1065 (1101)
++++.. + +.+.++|+.+++.+.++. .+ ..+..++|+| |++ ++++.. .++.|.|+|+.
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~----vg-------~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----NG-------HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----EE-------EEECEEEECC-SSSCEEEEEETTTTEEEEEESS
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEE----CC-------CCcceEEECC-CCCEEEEEccCCCCeEEEEECC
Confidence 887643 2 356699999999998876 21 1244799999 565 567776 59999999999
Q ss_pred CCC
Q 001318 1066 ESE 1068 (1101)
Q Consensus 1066 ~~~ 1068 (1101)
+++
T Consensus 346 t~k 348 (368)
T 1mda_H 346 SDQ 348 (368)
T ss_dssp SCE
T ss_pred CCc
Confidence 988
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-08 Score=107.70 Aligned_cols=238 Identities=10% Similarity=0.075 Sum_probs=151.5
Q ss_pred CCCceEEeeec-CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-C
Q 001318 748 NSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G 825 (1101)
Q Consensus 748 ~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-d 825 (1101)
.++++|++.+. ++.|.++|+.+....+. ..... +...+.. +. .......+.++|+| +++++. +
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~--~~k~i-------e~~~~~~---~~--g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPK--IIKVI-------EPEEVKK---VS--GYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCE--EEEEE-------CHHHHHH---HH--CEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCce--eeeee-------chhhccc---cc--CCCcccceeECCCe-EEEEcCCC
Confidence 77887776665 68899999743321111 00000 0000000 00 11235668889999 555543 4
Q ss_pred ------CeEEEEECCCCceeeEecCCCC---CeEEEEEecCCCcEEEEEe-------------------ccCeEEEEEee
Q 001318 826 ------GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM-------------------DDSSIQIYNVR 877 (1101)
Q Consensus 826 ------g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~-------------------~dg~v~vwd~~ 877 (1101)
|.|.++|.++++.+.++..... --..+.|+| +++.+++.. .+.+|.+||+.
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 6899999999999998863322 234588899 888777764 36899999999
Q ss_pred cceEeeeecCc-c-cCeeEEEE--cCCCCEEEEEe------CCCceEEEeCCCcccccceeeecCCCCCC----------
Q 001318 878 VDEVKSKLKGH-S-KRITGLAF--SHALNVLVSSG------ADSQLCVWSSDGWEKQKNRFLQIPTGRTP---------- 937 (1101)
Q Consensus 878 ~~~~~~~l~~h-~-~~V~~l~~--s~dg~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~---------- 937 (1101)
+++.+.++..- . .....+.| +|+++++..++ .+++|.+|..+.++......+.+......
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 99888877642 1 23345555 99999988776 45688887766543322222211111000
Q ss_pred --CCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcC---CceeeeeccCCCC------------CCCeeEEEEcCCCCEEE
Q 001318 938 --TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT---KLECVKQWVPRES------------SAPITHATFSCDSQLVY 998 (1101)
Q Consensus 938 --~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~---~~~~~~~~~~~~h------------~~~i~~l~~spdg~~l~ 998 (1101)
.......+.+|+||++|.++ ..+.|.+||+. +.+.+..+...+. ......+++||||++|+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence 01356889999999999995 56799999985 3455555544321 11468899999999999
Q ss_pred EEE
Q 001318 999 ACF 1001 (1101)
Q Consensus 999 s~s 1001 (1101)
++.
T Consensus 397 VaN 399 (462)
T 2ece_A 397 VTN 399 (462)
T ss_dssp EEC
T ss_pred EEc
Confidence 887
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-08 Score=114.23 Aligned_cols=244 Identities=11% Similarity=0.090 Sum_probs=165.7
Q ss_pred CeeEEEEec-----CCCEEEEEe--CCeEEEEECCCCceeeEecCC-CCCeEEEEE-e-cCCCcEEEEEe----------
Q 001318 807 AVPCFALSK-----NDSYVMSAS--GGKISLFNMMTFKTMATFMPP-PPAATFLAF-H-PQDNNIIAIGM---------- 866 (1101)
Q Consensus 807 ~i~~~~~s~-----dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~-s-p~d~~~lasg~---------- 866 (1101)
......+|. ||+++.+.. ++.|.+.|+.+.++.+.+.-. ......+++ + | +++++++++
T Consensus 86 d~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 86 DLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp CBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSS
T ss_pred CCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCC
Confidence 334466665 999999887 577999999999988854322 345778888 4 8 788888774
Q ss_pred --------ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC---------------------------
Q 001318 867 --------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--------------------------- 911 (1101)
Q Consensus 867 --------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~--------------------------- 911 (1101)
.++.+.++|..+.+...++.--. .-..++++|||+++++++.+.
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred cccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 35689999999988887775322 346688999999999888553
Q ss_pred -----------ceEEEeCCCccccc-ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCce------
Q 001318 912 -----------QLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE------ 971 (1101)
Q Consensus 912 -----------~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~------ 971 (1101)
.|.|.|..+.+... ...+.. + .....+.++|||++++++ .+.+|.++|+.+.+
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~ 316 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN 316 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGGGCCSSEEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC
T ss_pred eccCCCeeEECcEEEEeCcccCCceeEEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc
Confidence 35666665521000 111111 1 245789999999999985 67799999999763
Q ss_pred ------eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC----------ceeeeecCCCcccCCCCCCCCc
Q 001318 972 ------CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSSNV 1035 (1101)
Q Consensus 972 ------~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v 1035 (1101)
.+..... ......++|+|||...++.-.|+.|.+||+++ ...+.++.... .| ||. -
T Consensus 317 l~~~~~v~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y-qp-Gh~---~ 388 (595)
T 1fwx_A 317 ADPRSAVVAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-QP-GHL---K 388 (595)
T ss_dssp CCGGGGEEECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-CE-EEE---E
T ss_pred cCcccceEEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc-cc-ccc---e
Confidence 2333332 45789999999995455666899999999987 45666665321 21 110 1
Q ss_pred cceEEEEeCCCCCEEEEEec---CCc----------EEEEeccCCC
Q 001318 1036 HPLVIAAHPQEPNEFALGLS---DGG----------VHVFEPLESE 1068 (1101)
Q Consensus 1036 ~~~~i~~~~~d~~~l~s~~~---dg~----------v~vW~~~~~~ 1068 (1101)
..+.++.+| ||++|++... |+- -.+.|++.++
T Consensus 389 ~~~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 389 TVMGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp ETTTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eccceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 112345667 7899888754 332 2789997666
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-07 Score=106.38 Aligned_cols=233 Identities=9% Similarity=0.070 Sum_probs=140.1
Q ss_pred EEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCc
Q 001318 361 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 440 (1101)
Q Consensus 361 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 440 (1101)
+++++.++.|..+|..+++.+-...+.. .. . ........+. .....++..+++++.++.|..+|.++|+
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~-------~~-~--~~~~~~~~~~-~~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAE-------KD-G--WFSKEPALLS-GGVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC-------------CCSCCCCCEE-EEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCcc-------cc-c--cccccCcccc-cCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 7777888999999999998875432210 00 0 0000012222 2222356788889999999999999998
Q ss_pred eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe-----EEEeeeecCCccEEEE
Q 001318 441 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV-----YSVCPHHKENIQFIFS 515 (1101)
Q Consensus 441 ~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-----~~v~~~~~~~~~~l~s 515 (1101)
.+-.. .+. .......... ++ .++.++.++.|..+|..+|+.+..+....... ..... . + ..++.
T Consensus 125 ~~W~~-~~~--~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~-~-~~v~~ 193 (376)
T 3q7m_A 125 VAWQT-KVA--GEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--A-F-GAAVV 193 (376)
T ss_dssp EEEEE-ECS--SCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--E-T-TEEEE
T ss_pred EEEEE-eCC--CceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--E-C-CEEEE
Confidence 66432 121 1111112222 33 47778889999999999999988776432211 11121 1 2 46788
Q ss_pred EecCCcEEEEecCCCCceeeecCCCCc----eeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001318 516 TALDGKIKAWLYDNLGSRVDYEAPGRW----CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 591 (1101)
Q Consensus 516 ~~~dg~i~~wd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 591 (1101)
++.++.|..+|..+++........... +..+. ..... + .+ .+..++.++.++.+..+|..
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~~~---------p----~~--~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS-DVDTT---------P----VV--VNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC------------CCCCC---------C----EE--ETTEEEEECTTSCEEEEETT
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCccccccc-ccCCC---------c----EE--ECCEEEEEecCcEEEEEECC
Confidence 888999999999988776655432110 00000 00000 0 00 13467778889999999999
Q ss_pred CCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 592 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 592 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+++.+...... ....+. .++..+++++.++.+..+|..++
T Consensus 258 tG~~~w~~~~~----~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 258 SGQIMWKRELG----SVNDFI--VDGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp TCCEEEEECCC----CEEEEE--EETTEEEEEETTCCEEEEETTTC
T ss_pred CCcEEeeccCC----CCCCce--EECCEEEEEcCCCeEEEEECCCC
Confidence 99888776532 122232 24667777788888888887766
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=0.00012 Score=86.53 Aligned_cols=461 Identities=10% Similarity=-0.027 Sum_probs=231.7
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
....-..+..++|++.+..|+.+-...+.|..+++........ ++...-.....+++.+.++
T Consensus 35 ~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 35 VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp -CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTT
T ss_pred EEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCC
Confidence 3345567889999998887676766678898888875421110 1222234789999999666
Q ss_pred eEEEE-EcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEe-cCCCcEEEEeCCCCceEEEecCcccC
Q 001318 421 LFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 421 ~las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
.|..+ ...+.|.+.+.++..... . +...-.....|++.|.+.. +++|- +..+.|...++...............
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~-l--~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~ 172 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKV-L--FWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 172 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEE-E--ECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSS
T ss_pred EEEEEeCCCCEEEEEECCCCCEEE-E--EeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECCCCceEEEEeCCCCC
Confidence 55555 557899999998754221 1 2234456788999998765 34443 33466777775533332223233445
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
.+.+++.+. ++.+.++-...+.|...|++............... ..+++..+ ..+++
T Consensus 173 P~Glald~~-~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P---------------------~gi~~~~~-~ly~t 229 (619)
T 3s94_A 173 PNGLTLDYE-EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHP---------------------FALTLFED-ILYWT 229 (619)
T ss_dssp EEEEEEETT-TTEEEEEETTTCCEEEESSSCCEEC---------C---------------------CCEEESSS-EEEEE
T ss_pred CcEEEEEcc-CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCc---------------------eEEEEeCC-EEEEe
Confidence 677777533 23444444556778777776422211111011111 12333332 23333
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEeCC--------CcEEEEEecCccccccccccccc
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND--------NGIKILATSDGIRLLRTFENLAY 649 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~~~ 649 (1101)
-...+.|...|..+++....+.... .....+.+. +..+-. +... ..+.+-....+ + .
T Consensus 230 d~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~~~~qp~--~~n~C~~~ng~Cs~lCl~~~~~~--------~--~ 295 (619)
T 3s94_A 230 DWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFSQQRQPN--ATNPCGIDNGGCSHLCLMSPVKP--------F--Y 295 (619)
T ss_dssp CTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECCGGGSCC--CCCTTTTTGGGCSSEEEECSSTT--------S--E
T ss_pred cCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEccccCCC--ccccccCCCCcccceEECCCCCC--------C--c
Confidence 3456778888888777655554221 122333332 110000 0000 00110000000 0 0
Q ss_pred cccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccc
Q 001318 650 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 729 (1101)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 729 (1101)
. +..+.+ .. -...+.........+|+.+ ..+.|+..++........
T Consensus 296 --~--------C~C~~g------------------~~--l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~--- 341 (619)
T 3s94_A 296 --Q--------CACPTG------------------VK--LLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDI--- 341 (619)
T ss_dssp --E--------EECCTT------------------CC--BCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCE---
T ss_pred --e--------EeCCch------------------he--ecccCcccCCCCceEEEEE-cccceEEEecCCCcccee---
Confidence 0 000000 00 0000000111112233333 335666666654322111
Q ss_pred cccCccccccceEEEEEcCCCceEEeee-cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCe
Q 001318 730 LRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 808 (1101)
Q Consensus 730 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i 808 (1101)
.++.. .-..+.+++|.+.+..|+.+. ..+.|+.+++.... .... ... .-..+
T Consensus 342 -~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~----------------------~~~v-~~~--~~~~p 394 (619)
T 3s94_A 342 -VLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG----------------------SQFV-VTA--QIAHP 394 (619)
T ss_dssp -ECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----------------------CEEE-ECS--SCSCC
T ss_pred -EEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc----------------------cEEE-EEC--CCCCc
Confidence 11110 224577899998655555444 46777776653210 0000 000 12456
Q ss_pred eEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeecceEeeee
Q 001318 809 PCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKL 885 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~~~~~l 885 (1101)
..+++...+..|+.+. .+.|.+.++........+...-.....+++.|..|.++.+-. ..+.|...++. |+....+
T Consensus 395 ~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l 473 (619)
T 3s94_A 395 DGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVL 473 (619)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEE
T ss_pred CceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEE
Confidence 7899998777676665 588999998754332223334567899999994455444432 23566666654 3322222
Q ss_pred -cCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcc
Q 001318 886 -KGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWE 922 (1101)
Q Consensus 886 -~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~ 922 (1101)
...-...++|++.+++..|..+. ..+.|...++++..
T Consensus 474 ~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 474 VNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred EeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 22344568899998777776665 44678888887643
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.7e-09 Score=113.23 Aligned_cols=176 Identities=12% Similarity=0.124 Sum_probs=106.4
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 493 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 493 (1101)
.+..+| .|.+++.++.|..|| .+++.... ...+...+.++...+++. +..++.+ |..+|. +|+.+..+.
T Consensus 26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~---~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWF---FKSGEIIECRPSIGKDGT---IYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp EECTTS-CEECSSTTTTTEEEC-TTSCEEES---SCGGGEEEECCEETTTTE---ECCSSCE--EEEECC-CGGGGGGSC
T ss_pred eEccCC-eEEEEcCCCEEEEEC-CCCcEEEE---EecCCCcccceEEecCCc---EEEecCc--EEEECC-CCcEEEEEE
Confidence 343445 455667788899999 77775432 233444567778877775 5555555 888985 776654443
Q ss_pred CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCC
Q 001318 494 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573 (1101)
Q Consensus 494 ~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1101)
..........+. + ..++.++.++.|..+|.. ++...........+.++... +++
T Consensus 95 ~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~---------------------~~g 148 (330)
T 3hxj_A 95 TKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS---------------------EDG 148 (330)
T ss_dssp C-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC---------------------TTS
T ss_pred CCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc---------------------CCC
Confidence 332222223332 2 467778888999999887 55554444333333333333 333
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 633 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 633 (1101)
. +..++.++.|..||.. ++.+..+.... ..+.++.+.+++.+++. + +.|..+|
T Consensus 149 ~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~-t--~~l~~~d 201 (330)
T 3hxj_A 149 T-IYVGSNDNYLYAINPD-GTEKWRFKTND--AITSAASIGKDGTIYFG-S--DKVYAIN 201 (330)
T ss_dssp C-EEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTCCEEEE-S--SSEEEEC
T ss_pred E-EEEEcCCCEEEEECCC-CCEeEEEecCC--CceeeeEEcCCCEEEEE-e--CEEEEEC
Confidence 3 6677788999999998 87776665432 24666777777765443 3 6677776
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=3e-10 Score=126.36 Aligned_cols=186 Identities=12% Similarity=0.016 Sum_probs=111.1
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccC-ee
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-IT 893 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~ 893 (1101)
++..+++++ ||.|+.||..+|+.+.++.. ..+.+..+.. +++++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 566778887 89999999999999988876 4555555666 6778888889999999999999877666544221 11
Q ss_pred -EEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCce
Q 001318 894 -GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 971 (1101)
Q Consensus 894 -~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~ 971 (1101)
+..+. ++..|++++.|+.|+.||..+|+..... ..+ ....++|++..+++ +.++.|+.||..+++
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~-----~~~-------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL-----SSA-------FADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe-----cCC-------CcccccccCCEEEEEecCCEEEEEECCCCC
Confidence 11111 3457788888999999999998753221 111 12345667777777 578999999999998
Q ss_pred eeeeccCCCCCCCeeEEEEcCCC---CEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 972 CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg---~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.+..+... .....+++++. ..+++++.||.|+.||..+|+.+-++.
T Consensus 152 ~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEecc----cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 76554321 12233444432 557778899999999999999877654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.7e-10 Score=124.82 Aligned_cols=189 Identities=13% Similarity=0.111 Sum_probs=107.8
Q ss_pred CCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCC
Q 001318 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 937 (1101)
Q Consensus 858 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 937 (1101)
++..|++++.||.|+.||..+|+.+.++.. +.+.+..+..++..+++++.|+.|+.||..+++...........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~---- 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE---- 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc----
Confidence 456888899999999999999999888776 55666666778888888889999999999887643221111000
Q ss_pred CCCCC-eEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 001318 938 TAQSD-TRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 938 ~~~~v-~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
.+ ...++..++ .+++ +.++.++.||..+|+.+..+.. +. ...++|++..|++++.|+.|+.||..+|+
T Consensus 82 ---~~~~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 82 ---LVQASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp ---HHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSS
T ss_pred ---ccccCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCC
Confidence 00 011112334 4444 6889999999999998766542 21 24567788999999999999999999999
Q ss_pred eeeecCCCcccCCCCCCCCccceEEEEeCC--CCCEEEEEecCCcEEEEeccCCCccccCC
Q 001318 1016 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSDGGVHVFEPLESEGKWGVP 1074 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~--d~~~l~s~~~dg~v~vW~~~~~~~~~~~~ 1074 (1101)
.+..+..... . ..++.++ ....+++++.||.|+.||..+|+..|...
T Consensus 152 ~~W~~~~~~~----------~--~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYFDY----------A--ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEEEE----------C--CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEecccc----------c--CccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 8766541111 0 1112220 01467788899999999999999777653
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-07 Score=101.45 Aligned_cols=296 Identities=11% Similarity=0.066 Sum_probs=180.5
Q ss_pred ccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceee
Q 001318 701 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA 780 (1101)
Q Consensus 701 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 780 (1101)
...+..++.++.+..|| .+... ..... .....+.++.+.++|. +.+++.+ +..+|... .
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~---~~~~~----~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g-~--------- 88 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSV---KWFFK----SGEIIECRPSIGKDGT-IYFGSDK--VYAINPDG-T--------- 88 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCE---EESSC----GGGEEEECCEETTTTE-ECCSSCE--EEEECCCG-G---------
T ss_pred CCeEEEEcCCCEEEEEC-CCCcE---EEEEe----cCCCcccceEEecCCc-EEEecCc--EEEECCCC-c---------
Confidence 44566667778888888 44222 11111 1334556777777776 4444444 66655311 0
Q ss_pred eecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCC
Q 001318 781 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 859 (1101)
Q Consensus 781 ~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 859 (1101)
.+|....+ .......++. +..+.+++ ++.|..+|.. ++.......+...+.++...+ ++
T Consensus 89 ----~~~~~~~~------------~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g 148 (330)
T 3hxj_A 89 ----EKWRFDTK------------KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DG 148 (330)
T ss_dssp ----GGGGSCC-----------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TS
T ss_pred ----EEEEEECC------------CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CC
Confidence 12222111 1112223333 44566666 8999999998 777766665555667777776 56
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
. |..|+.++.|+.||.. ++.+..+......+.++.+.++|.+.+.. +.|..+| .+++... ..... .
T Consensus 149 ~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~----~~~~~----~ 214 (330)
T 3hxj_A 149 T-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKW----NFYAG----Y 214 (330)
T ss_dssp C-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEE----EECCS----S
T ss_pred E-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEE----EEccC----C
Confidence 5 5557888999999988 77776666556667888887788766544 7799999 5544321 11111 1
Q ss_pred CCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeee
Q 001318 940 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~ 1019 (1101)
..+.++.+.++|...+.+.++.+..+|. +++.+..+.. ....+.++.+.++|. |..++.+|.|..+|. +++.+..
T Consensus 215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~--~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~ 289 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKT--GKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWN 289 (330)
T ss_dssp CCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEEC--SSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEE
T ss_pred cceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeC--CCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEE
Confidence 3577888999998777777889999985 4555544432 233445566666665 556778889999995 7777766
Q ss_pred cCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1020 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1020 ~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+.. +. ..+. ++...+ ++ .|..++.+|.+++...+..+
T Consensus 290 ~~~----~~----~~~~--~~~~d~-~g-~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 290 FET----GS----WIIA--TPVIDE-NG-TIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EEC----SS----CCCS--CCEECT-TC-CEEEECTTSCEEEEEC----
T ss_pred EEc----CC----cccc--ceEEcC-CC-EEEEEcCCCeEEEEeccccc
Confidence 552 11 1122 344544 44 57778899999998876544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.9e-08 Score=110.53 Aligned_cols=237 Identities=6% Similarity=0.006 Sum_probs=152.2
Q ss_pred cCCCceEEeeecC-ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE-e-cCCCEEEEE
Q 001318 747 TNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-S-KNDSYVMSA 823 (1101)
Q Consensus 747 s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~-s-~dg~~la~~ 823 (1101)
.+||++++....+ +.|.+.|+.. .+..... .......+..+++ + |++++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t----------------------~~~~~ii--~ip~g~~phg~~~~~~p~~~~v~~~ 153 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDV----------------------MKCDAIL--EIPNAKGIHGLRPQKWPRSNYVFCN 153 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTT----------------------TEEEEEE--ECSSCCSEEEEEECCSSBCSEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCC----------------------ceEeeEE--eCCCCCCCcceeeeecCCCcEEEEe
Confidence 3488888776654 6677777632 2211100 0112345778887 5 899999888
Q ss_pred e-------------------CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC---------------
Q 001318 824 S-------------------GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--------------- 869 (1101)
Q Consensus 824 s-------------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--------------- 869 (1101)
+ ++.+.+.|..+.+...++.-.. ....++++| +++++++.+.+.
T Consensus 154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMD 231 (595)
T ss_dssp ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccc
Confidence 3 3579999999988888876322 456788999 888888877442
Q ss_pred -----------------------eEEEEEeec--ceE-eeeecCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcc
Q 001318 870 -----------------------SIQIYNVRV--DEV-KSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWE 922 (1101)
Q Consensus 870 -----------------------~v~vwd~~~--~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~ 922 (1101)
.|.|.|..+ ++. +..+.. .....++.++|||++++.++ .+.+|.++|+.+.+
T Consensus 232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 310 (595)
T ss_dssp EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence 355556555 333 333322 12346789999999877665 67889999998643
Q ss_pred cc--------cceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCC----------ceeeeeccCC---
Q 001318 923 KQ--------KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTK----------LECVKQWVPR--- 979 (1101)
Q Consensus 923 ~~--------~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~----------~~~~~~~~~~--- 979 (1101)
.. .........| .....++|+|+| ++.++ -+++|.+||+.+ .+.+..+..+
T Consensus 311 ~~~~~~l~~~~~v~~~v~vG-----~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 311 AVFYENADPRSAVVAEPELG-----LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp HHHHSCCCGGGGEEECCBCC-----SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred cccccccCcccceEEEcCCC-----CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 10 0111222223 356899999999 65553 789999999987 4455555432
Q ss_pred CCCCCeeEEEEcCCCCEEEEEEc---CCe----------EEEEEcCCcee
Q 001318 980 ESSAPITHATFSCDSQLVYACFL---DAT----------VCVFSAANLKL 1016 (1101)
Q Consensus 980 ~h~~~i~~l~~spdg~~l~s~s~---dg~----------v~vwd~~~~~~ 1016 (1101)
+|...-..+.++|||++|++... |+. -.++|+.++++
T Consensus 385 Gh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 385 GHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp EEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred ccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 22222233456899999998763 332 28899976654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.3e-07 Score=108.32 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=111.8
Q ss_pred EEEEecCCCcEEEEEeccCe-------------------EEEEEeecceEeeeecC--cc-------cCeeEEEEcCCCC
Q 001318 851 FLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHALN 902 (1101)
Q Consensus 851 ~l~~sp~d~~~lasg~~dg~-------------------v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~ 902 (1101)
.+++++ +..+++.++.++. |..+|..+|+.+-.++. |. .+.....+..+|+
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 578888 6778888877763 99999999998876653 32 2222223334675
Q ss_pred ---EEEEEeCCCceEEEeCCCcccccceeeec---------CCCCC--------C-----------CCCCCeEEEEcCCC
Q 001318 903 ---VLVSSGADSQLCVWSSDGWEKQKNRFLQI---------PTGRT--------P-----------TAQSDTRVQFHQDQ 951 (1101)
Q Consensus 903 ---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---------~~~~~--------~-----------~~~~v~~~~~s~dg 951 (1101)
.|+.++.+|.+.++|..+|+......... ..+.. . ....-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 68899999999999999987642111000 00000 0 00001236788887
Q ss_pred cEEEE-E------------------------------------eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCC
Q 001318 952 IHFLV-V------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS 994 (1101)
Q Consensus 952 ~~la~-~------------------------------------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg 994 (1101)
..+.+ . .++.|..||+.+++.+-.... ..+.....+...+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~g 469 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAG 469 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETT
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCC
Confidence 76654 1 127799999999998766542 2233444455578
Q ss_pred CEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 995 QLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 995 ~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.++++++.|+.|++||..+|+.+.+++
T Consensus 470 g~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 470 NLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCcccchhhhhhcChhheEec
Confidence 889999999999999999999998887
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.7e-07 Score=93.07 Aligned_cols=200 Identities=10% Similarity=0.042 Sum_probs=137.6
Q ss_pred CeeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCC-CeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 807 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
....++|++|+.++++.+ ++.|+++|..+++.+.++.-... ....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 467899999875555443 37899999999999988753222 23345555 3456666667899999999999999
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCe
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 961 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~ 961 (1101)
.++..-... ...+++||+.|+++..+++|.++|..+.+.......... +.. ...+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p--~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHR--VIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccc--cccceeEEEE-CCEEEEecCCCCe
Confidence 888532121 234566888777777788999999988664433322211 110 0134567777 77655554 5789
Q ss_pred EEEEEcCCceeeeeccCCC---------C--CCCeeEEEEcCCCCEE-EEEEcCCeEEEEEcCCc
Q 001318 962 LAIFETTKLECVKQWVPRE---------S--SAPITHATFSCDSQLV-YACFLDATVCVFSAANL 1014 (1101)
Q Consensus 962 v~vwd~~~~~~~~~~~~~~---------h--~~~i~~l~~spdg~~l-~s~s~dg~v~vwd~~~~ 1014 (1101)
|.+.|..+++.+..+...+ + ......++|+|+++.| +++.....|++.++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999988876421 0 1356899999998754 55657888998887654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.4e-07 Score=93.24 Aligned_cols=217 Identities=11% Similarity=0.020 Sum_probs=145.6
Q ss_pred CceeeEecCCCC--CeEEEEEecCCCcEEEEEec--cCeEEEEEeecceEeeeecCccc-CeeEEEEcCCCCEEE-EEeC
Q 001318 836 FKTMATFMPPPP--AATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNVLV-SSGA 909 (1101)
Q Consensus 836 ~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~~~~~l~~h~~-~V~~l~~s~dg~~l~-s~s~ 909 (1101)
.+.+.++. |.. ....++|++ +++++++.+. ++.|+++|+.+++.+..+.-... ....+++. +..|. +.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34556664 443 357899999 6766655543 57999999999998888642211 22345554 44554 4456
Q ss_pred CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCC---Ce
Q 001318 910 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PI 985 (1101)
Q Consensus 910 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~---~i 985 (1101)
++.+.++|..+.+...... .+ .+ ....+++||+.++++ .++.|.++|..+.+.+..+....+.. .+
T Consensus 85 ~~~v~viD~~t~~v~~~i~----~g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFT----HQ-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEEEE----CC-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEEEE----CC-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 7899999999866433221 11 11 124466788877774 56799999999999888876533222 36
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccC----CCCCCCCccceEEEEeCCCCCEEEEEecCCcEEE
Q 001318 986 THATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1061 (1101)
Q Consensus 986 ~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~v 1061 (1101)
..+.|. ||+..+....++.|.+.|..+++.+.++......+ .++ .....+..|+|+|+...+++++...+.|++
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 788888 77655555567899999999999999887431110 010 111344589999965567888888999999
Q ss_pred EeccCCC
Q 001318 1062 FEPLESE 1068 (1101)
Q Consensus 1062 W~~~~~~ 1068 (1101)
-++...+
T Consensus 233 i~l~~~~ 239 (266)
T 2iwa_A 233 IKLHLVR 239 (266)
T ss_dssp EEEEECC
T ss_pred EEEeccc
Confidence 9997654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.79 E-value=0.0014 Score=82.60 Aligned_cols=224 Identities=7% Similarity=0.024 Sum_probs=126.0
Q ss_pred EEEEEeCCeEEEEECCCCce--eeEecCCCCCeEEEEEecCCCcEEEEEecc----------------------------
Q 001318 819 YVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD---------------------------- 868 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---------------------------- 868 (1101)
-++..+++.++|..+.+.+. ++++. -...+..++++| ..+.++++..+
T Consensus 708 g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 708 SLALANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp EEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred cEEEEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 45555566788887754322 22333 235678888998 55555444311
Q ss_pred ---------------------CeEEEEEeecceEeeeecC-cccCeeEEE---EcCC-CCEEEEEe----------CCCc
Q 001318 869 ---------------------SSIQIYNVRVDEVKSKLKG-HSKRITGLA---FSHA-LNVLVSSG----------ADSQ 912 (1101)
Q Consensus 869 ---------------------g~v~vwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-g~~l~s~s----------~D~~ 912 (1101)
+.|++.|-.+++.+..+.- ....+.+++ |..+ ..+|+.|. ..|.
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 2355666656655544321 122344444 4333 46888776 2367
Q ss_pred eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC
Q 001318 913 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 992 (1101)
Q Consensus 913 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp 992 (1101)
|.++++..++. ......... +.+++++-- +| +|+++-.+++++|++...+.++ ..... -..|..+....
T Consensus 866 i~vf~v~~~kL-~lv~~~~v~------g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~-~~~i~~~~l~~ 934 (1158)
T 3ei3_A 866 IVVFQYSDGKL-QTVAEKEVK------GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNH-YNNIMALYLKT 934 (1158)
T ss_dssp EEEEEEETTEE-EEEEEEEES------SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEE-CCCSCEEEEEE
T ss_pred EEEEEEECCEE-EEEEEEEcC------CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeec-cccEEEEEEec
Confidence 99999874321 111111111 356666522 24 6777778999999998765433 11111 11233333333
Q ss_pred CCCEEEEEEcCCeEEEEE--cCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 993 DSQLVYACFLDATVCVFS--AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 993 dg~~l~s~s~dg~v~vwd--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
.+.+++.|..-..|.++. ...+++.-.-+ .+.+ .+.+++.|.. ...++.+..+|++++.+...
T Consensus 935 ~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~--D~~~-------~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 935 KGDFILVGDLMRSVLLLAYKPMEGNFEEIAR--DFNP-------NWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ETTEEEEEESSBCEEEEEEETTTTEEEEEEE--CCSC-------BCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred cCCEEEEEEhhheEEEEEEEcCCCeEEEEEe--eccc-------ccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 577888888777776654 44444433221 2222 3344788875 35788899999999998765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=5.4e-06 Score=87.42 Aligned_cols=202 Identities=10% Similarity=-0.017 Sum_probs=132.2
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 807 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
.+..+++++++..|+.+. ++.|..++.........+.........+++++++++++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999887777776 588999999765544334333357889999994455555555678999999864322112
Q ss_pred ecCcccCeeEEEEcCCCCEEEEEeC---CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eC
Q 001318 885 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 959 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d 959 (1101)
..........++++|++..|..+.. .+.|..++++.... ..+... + ......+++++++..|.++ ..
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~~~~-~----~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQD-N----LGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEECT-T----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEEEEC-C----CCCCcEEEEcCCCCEEEEEECCC
Confidence 2222245689999997666655543 36788888875321 111111 1 1245889999988777664 56
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.|.++|..+........ + ......+++. +..|+.+. ..+.|.++|..+++.+..+.
T Consensus 189 ~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CEEEEEecCCCceEEEec--C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 789999998655433332 1 2345667664 45555444 56899999999999988876
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=0.001 Score=78.47 Aligned_cols=501 Identities=9% Similarity=0.019 Sum_probs=255.2
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
.-..+..++|++.+..|+.+-..++.|..+++....... ++.........+|+.+.++.|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEE
Confidence 445788999999888777777778899999987643321 1222224577899998766665
Q ss_pred EE-EcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEe-cCCCcEEEEeCCCCceEEEecCcccCeEE
Q 001318 424 VA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYS 501 (1101)
Q Consensus 424 s~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 501 (1101)
.+ ...+.|.+.+++...... . +...-.....|++.|.... ++++- +..+.|...++..... ..+.........
T Consensus 96 ~tD~~~~~I~v~~~dG~~~~~-l--~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~G 170 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHRQV-L--VWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANG 170 (628)
T ss_dssp EEETTTTEEEEEETTSTTCEE-E--ECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEE
T ss_pred EEECCCCEEEEEecCCCcEEE-E--EeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcce
Confidence 54 456889999988654221 1 2233456789999987664 33443 3456788888654443 333234455677
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
+++.+.. +.+.++-...+.|...|++..... .+........ .+++.. +..+++-..
T Consensus 171 lalD~~~-~~LY~aD~~~~~I~~~d~dG~~~~-v~~~~l~~P~---------------------glav~~-~~ly~tD~~ 226 (628)
T 4a0p_A 171 LTIDYAK-RRLYWTDLDTNLIESSNMLGLNRE-VIADDLPHPF---------------------GLTQYQ-DYIYWTDWS 226 (628)
T ss_dssp EEEETTT-TEEEEEETTTTEEEEEETTSCSCE-EEEECCSCEE---------------------EEEEET-TEEEEEETT
T ss_pred EEEcccc-CEEEEEECCCCEEEEEcCCCCceE-EeeccCCCce---------------------EEEEEC-CEEEEecCC
Confidence 8874322 234444455678888888653321 1111111112 233332 233344445
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCCcCeEE-EccCCCEEEEEeCC--------CcEEEEEecCcccccccccccccccc
Q 001318 582 DFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKDGCLLAVSTND--------NGIKILATSDGIRLLRTFENLAYDAS 652 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~~~~~~ 652 (1101)
.+.|...|..+++....+.... .....+. +++..+. +... ..+.+-....+..
T Consensus 227 ~~~I~~~dk~tg~~~~~l~~~~--~~p~~i~v~~~~~q~---~~n~C~~~ng~C~~~C~~~~~~~~~------------- 288 (628)
T 4a0p_A 227 RRSIERANKTSGQNRTIIQGHL--DYVMDILVFHSSRQS---GWNECASSNGHCSHLCLAVPVGGFV------------- 288 (628)
T ss_dssp TTEEEEEETTTCCSCEEEECSC--CSCCEEEEECGGGSC---CCCTTTTTGGGCSSEEEEETTTEEE-------------
T ss_pred CCEEEEEECCCCCceEEEecCC--CCcceeeeeeecccc---cceEeccCCCCcchhhhcCCCCCee-------------
Confidence 7788888877776665554221 1223332 2221110 0000 0000000000000
Q ss_pred ccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccccc
Q 001318 653 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 732 (1101)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 732 (1101)
+..+.+ . .. ...+... .+....++.+. ...|+-..+....... ..+
T Consensus 289 --------C~C~~g-----------~-----~l----~~d~~~C-~~~~~~Ll~s~-~~~i~~i~l~~~~~~~----~~l 334 (628)
T 4a0p_A 289 --------CGCPAH-----------Y-----SL----NADNRTC-SAPTTFLLFSQ-KSAINRMVIDEQQSPD----IIL 334 (628)
T ss_dssp --------EECSTT-----------C-----EE----CTTSSCE-ECCSSEEEEEE-TTEEEEECCCTTCCCC----EEC
T ss_pred --------EEcCCC-----------c-----Ee----cccCCcC-ccccceeeeec-cceEEEEecccccCce----EEE
Confidence 000000 0 00 0000001 11122333332 2445444443211110 111
Q ss_pred CccccccceEEEEEcCCCceEEeeec-CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 733 PENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 733 ~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
+. ..-..+.++.|.+....|+.+.. .+.|+.++...... ..++.....+......+..+
T Consensus 335 ~~-~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------------------~~v~~~~~~~~~~~~~p~gl 394 (628)
T 4a0p_A 335 PI-HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------------------FTVVVSSVPSQNLEIQPYDL 394 (628)
T ss_dssp CC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------------EEEEC--------CCCEEEE
T ss_pred Ee-hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------------------eEEEEcccccccccCCcceE
Confidence 11 12345788999987666655543 56777665421100 00000000000023457899
Q ss_pred EEecCCCEEEEEe--CCeEEEEECCCCceeeEe-cCCCCCeEEEEEecCCCcEEEEEeccC--eEEEEEeecceEeeee-
Q 001318 812 ALSKNDSYVMSAS--GGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKL- 885 (1101)
Q Consensus 812 ~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l- 885 (1101)
|+...++.|..+. .+.|.+.++. ++....+ .........+++.|..+.++.+-.... .|...++. |.....+
T Consensus 395 AvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~ 472 (628)
T 4a0p_A 395 SIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLF 472 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEE
T ss_pred EeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEE
Confidence 9999888777665 5789999986 4544443 334567899999995555555433222 45555554 3323322
Q ss_pred cCcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEE
Q 001318 886 KGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLA 963 (1101)
Q Consensus 886 ~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~ 963 (1101)
...-...+.|++.+++..|..+.. .+.|...++++.... .... +.. .....+++.. +..+.+ ...+.|.
T Consensus 473 ~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~--~~~~---~~~---~~P~glav~~-~~ly~tD~~~~~i~ 543 (628)
T 4a0p_A 473 FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI--VLED---SNI---LQPVGLTVFE-NWLYWIDKQQQMIE 543 (628)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEEC---SSC---SCEEEEEEET-TEEEEEETTTTEEE
T ss_pred eccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE--EEEc---CCC---CCcEEEEEEC-CEEEEEECCCCeEE
Confidence 222345689999998777776654 577888998764321 1111 111 1345666654 333333 3556777
Q ss_pred EEEcCCceeeee
Q 001318 964 IFETTKLECVKQ 975 (1101)
Q Consensus 964 vwd~~~~~~~~~ 975 (1101)
..|..+|+....
T Consensus 544 ~~~k~~G~~~~~ 555 (628)
T 4a0p_A 544 KIDMTGREGRTK 555 (628)
T ss_dssp EEETTSSSCCEE
T ss_pred EEECcCCCCcEE
Confidence 777766654433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.7e-06 Score=98.74 Aligned_cols=196 Identities=9% Similarity=-0.086 Sum_probs=119.7
Q ss_pred EEEEecCCCEEEEEe-C----------------CeEEEEECCCCceeeEecCC--C-------CCeEEEEEecCCC---c
Q 001318 810 CFALSKNDSYVMSAS-G----------------GKISLFNMMTFKTMATFMPP--P-------PAATFLAFHPQDN---N 860 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s-d----------------g~i~vwd~~~~~~~~~~~~~--~-------~~i~~l~~sp~d~---~ 860 (1101)
.+++.++...++.+. + +.|..+|..+++.+..++.. . ....-+.... ++ +
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence 456677666666654 2 25999999999988776532 1 1111223334 56 4
Q ss_pred EEEEEeccCeEEEEEeecceEeeeecCcc-------------cCe--------------------------eEEEEcCCC
Q 001318 861 IIAIGMDDSSIQIYNVRVDEVKSKLKGHS-------------KRI--------------------------TGLAFSHAL 901 (1101)
Q Consensus 861 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~dg 901 (1101)
+++.++.+|.++++|..+|+.+....... .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67889999999999999998876543211 111 246788888
Q ss_pred CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCC
Q 001318 902 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 981 (1101)
Q Consensus 902 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h 981 (1101)
.+|+....+....++..... ...+. ...+....+..+|.+. ....++.|..||+.+++.+-.+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~---------~~~g~-~~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~-- 463 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLP---------YRAGQ-FFVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK-- 463 (571)
T ss_dssp TEEEEEEECEEEEEEECCCC---------CCTTS-CCCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred CEEEEEchhccccccccccc---------cccCC-ccccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence 88888877665555544321 00110 0000001122233321 0013578889999999887665432
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 982 ~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
..+.+..+...+.+++.++.||.|+.||..+|+.+.+++
T Consensus 464 -~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 464 -FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp -SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 223333333356677779999999999999999998887
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3e-06 Score=99.18 Aligned_cols=166 Identities=13% Similarity=0.132 Sum_probs=103.9
Q ss_pred EEEEecCCCcEEEEEecc----------------CeEEEEEeecceEeeeecC--cc--------cCeeEEEEc-CCC--
Q 001318 851 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKG--HS--------KRITGLAFS-HAL-- 901 (1101)
Q Consensus 851 ~l~~sp~d~~~lasg~~d----------------g~v~vwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg-- 901 (1101)
.+++.+ +..++..+..+ +.|.-+|..+|+.+-.++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456777 55666666654 3899999999998866543 21 1221 2222 467
Q ss_pred -CEEEEEeCCCceEEEeCCCcccccceeeec----------CCCCC----------C-----------CCCCCeEEEEcC
Q 001318 902 -NVLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGRT----------P-----------TAQSDTRVQFHQ 949 (1101)
Q Consensus 902 -~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------~~~~~----------~-----------~~~~v~~~~~s~ 949 (1101)
+.++.++.+|.+.++|..+|+......... ..+.. . ....-..++|+|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567888999999999999987643322110 00000 0 000113467777
Q ss_pred CCcEEEEE----------------------------------------eCCeEEEEEcCCceeeeeccCCCCCCCeeEEE
Q 001318 950 DQIHFLVV----------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHAT 989 (1101)
Q Consensus 950 dg~~la~~----------------------------------------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~ 989 (1101)
+..++++. ..+.|..||+.+++.+-..... .+...-.
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~ 479 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT 479 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence 76665541 2367888999999877655321 1222112
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 990 FSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 990 ~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+...+.+++.++.|+.++.||..+|+.+-+++
T Consensus 480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 23357778889999999999999999998887
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-06 Score=102.54 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=55.8
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCe-eEEEEcCCCC-E
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALN-V 903 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~-~ 903 (1101)
|.|..||+.+++.+.....+. ......+.. .+.++++|+.||.|+.||..+++.+..+....+.. .-+.+..+|+ +
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~y 515 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEE
Confidence 779999999999887765332 233334444 56688889999999999999999998876543221 2345556776 4
Q ss_pred EEEEe
Q 001318 904 LVSSG 908 (1101)
Q Consensus 904 l~s~s 908 (1101)
++.++
T Consensus 516 va~~~ 520 (668)
T 1kv9_A 516 VAIMA 520 (668)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.70 E-value=0.0024 Score=78.47 Aligned_cols=534 Identities=11% Similarity=0.069 Sum_probs=274.2
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
...|.++....+|. |-.|+.+| +..||..+.+-.. ........|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~-------------------~~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQ-------------------PETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECC-------------------CSCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEEC-------------------cccCCCceEEEEEe-cCC-cEEE
Confidence 35688988888886 55566554 7889987653211 00111235777764 355 4555
Q ss_pred EEcCCeEEEEEccCCceeeeeeee-c-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCc----cc
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEI-D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGH----EA 497 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l-~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h----~~ 497 (1101)
++.+ -+..+|..+++... .... . -....|.++....+|. +.+ |+.+ -+..+|..+++..... ... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6666 58889987755321 1000 0 1134688888887777 333 4444 5778887766543211 111 12
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
.|.++.. +.++..|..|+. +-+..+|..+..... +. .+ ....+..+....+|...+
T Consensus 192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~-------~l-------------~~~~i~~i~~d~~g~lWi 247 (758)
T 3ott_A 192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TE-------AF-------------HNNSIKSLALDGNGDLLA 247 (758)
T ss_dssp CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEE-EE-------EE-------------EEEEEEEEEECTTCCEEE
T ss_pred eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEe-cc-------CC-------------CCCeEEEEEEcCCCCEEE
Confidence 3666654 444444444554 457777765432111 10 00 011345555555555444
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCC-----CCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccccc
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 652 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 652 (1101)
|.. +-+.+++..+++......... ....|.++....+|.+.+ |+..| +.++.. .. ..+..
T Consensus 248 -gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~-~~--~~~~~-------- 312 (758)
T 3ott_A 248 -GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRY-NS--ALQFI-------- 312 (758)
T ss_dssp -EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECC-CC---CEEE--------
T ss_pred -EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccccc-CC--ceeEE--------
Confidence 444 468888887665432221110 112466777776776544 44445 433321 11 00000
Q ss_pred ccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccccc
Q 001318 653 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 732 (1101)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 732 (1101)
.....
T Consensus 313 ----------------------------------------------------------------~~~~~----------- 317 (758)
T 3ott_A 313 ----------------------------------------------------------------PISQI----------- 317 (758)
T ss_dssp ----------------------------------------------------------------EHHHH-----------
T ss_pred ----------------------------------------------------------------ecccC-----------
Confidence 00000
Q ss_pred CccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEE
Q 001318 733 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 812 (1101)
Q Consensus 733 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~ 812 (1101)
........|.++....+|...+. +.+|. ..++...+... ....+..... ...-....|.++.
T Consensus 318 ~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl-~~~~~~~~~~~---------~~~~~~~~~~-------~~~l~~~~v~~i~ 379 (758)
T 3ott_A 318 TGTGDGNQFYSLFRDSKGFYWFG-GANGL-IRFTDPAGERH---------DAIWYRMGDK-------TYPLSHNRIRHIY 379 (758)
T ss_dssp SCSCCCCBEEEEEECTTCCEEEE-ETTEE-EEESCTTSSCC---------CCEEECTTCS-------SSCCSCSCEEEEE
T ss_pred CCCCCCceEEEEEEcCCCCEEEe-eCCcc-eeecccccccc---------eeEEeccCCc-------CCCCCCCceEEEE
Confidence 00002245777777778875444 45553 33332111000 0000000000 0000235688888
Q ss_pred EecCCCEEEEEeCCeEEEEECCCCceeeEe--cC----CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc------e
Q 001318 813 LSKNDSYVMSASGGKISLFNMMTFKTMATF--MP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------E 880 (1101)
Q Consensus 813 ~s~dg~~la~~sdg~i~vwd~~~~~~~~~~--~~----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~------~ 880 (1101)
-..+|++.+. .++.|..||..+++...-. .. ....|.++.... ++++ -.|+..+-|.++|..+. .
T Consensus 380 ~d~~g~lWig-t~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~l-WigT~~~Gl~~~~~~~~~~~~~~~ 456 (758)
T 3ott_A 380 EDKEQQLWIA-TDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQL-WISTCLGGIFVVDKHKLMQSTSGQ 456 (758)
T ss_dssp ECTTSCEEEE-ETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEE-EEEESSSCEEEEEHHHHHHCCSSE
T ss_pred ECCCCCEEEE-eCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCE-EEEECCCceEEEccccccccCCcc
Confidence 8888876554 4678999998876543221 11 123578887776 5654 44776667888886531 1
Q ss_pred Ee--eee---cC-cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEE
Q 001318 881 VK--SKL---KG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 954 (1101)
Q Consensus 881 ~~--~~l---~~-h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 954 (1101)
.. ..+ .+ ....|.++...++|.+-+.++..+-|..+|..+++... ...........+.++....+|.+.
T Consensus 457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~-----~~~~~~~~~~~~~~i~~d~~g~lW 531 (758)
T 3ott_A 457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK-----LFADELTGEKSPNYLLCDEDGLLW 531 (758)
T ss_dssp EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE-----ECTTTSCGGGCEEEEEECTTSCEE
T ss_pred eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE-----ecCCCcCCCcccceEEECCCCCEE
Confidence 11 111 11 12358899998888877643334458889987754221 111111111356788888889877
Q ss_pred EEEeCCeEEEEEcCCceeeeeccCCC-CCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCC
Q 001318 955 LVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1033 (1101)
Q Consensus 955 a~~~d~~v~vwd~~~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1101)
+.+ .+.+..||..+++... +...+ ....|.++... +|. |..++..| |..||..+.+... +. ++..
T Consensus 532 igt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~----~~~~---- 597 (758)
T 3ott_A 532 VGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN----MTNK---- 597 (758)
T ss_dssp EEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C------CCC----
T ss_pred EEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec----CCCC----
Confidence 665 4568889887665432 11111 13568888764 565 44455555 7778988776542 21 2211
Q ss_pred CccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1034 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1034 ~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
... ...+...+| .|..|+.+| +..++...
T Consensus 598 ~~~--~~~~~~~~G-~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 598 RFT--SLLFDPKED-CVYLGGADG-FGISHSNL 626 (758)
T ss_dssp CCS--EEEEETTTT-EEEEECBSE-EEEEEC--
T ss_pred cee--eeEEECCCC-cEEEecCCc-eEEEChhh
Confidence 122 344444354 577777777 55666654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.68 E-value=6.9e-07 Score=90.33 Aligned_cols=201 Identities=11% Similarity=0.120 Sum_probs=131.7
Q ss_pred ceeeEecCCCCC--eEEEEEecCCCcEEEEEeccC--eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEe-CCC
Q 001318 837 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADS 911 (1101)
Q Consensus 837 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~ 911 (1101)
+.++++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.-. .........+++..|..+. .++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 4456664 5443 4778998 467777777766 9999999999998887543 2343333333455555544 588
Q ss_pred ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCC---CCeeE
Q 001318 912 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITH 987 (1101)
Q Consensus 912 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~---~~i~~ 987 (1101)
.+.+||.++.+........ + ....+++|++.|+.+ ..+.|.++|..+.+.+..+...... ..+..
T Consensus 108 ~v~v~D~~t~~~~~ti~~~---~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYD---G--------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE 176 (262)
T ss_dssp EEEEEETTTCCEEEEEECS---S--------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred EEEEEECccCcEEEEEECC---C--------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence 9999999987654332221 1 223445678877774 4678999999999988887653322 33455
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCC--CCCCCccceEEEEeCCCCCEEEEE
Q 001318 988 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG--VSSSNVHPLVIAAHPQEPNEFALG 1053 (1101)
Q Consensus 988 l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~i~~~~~d~~~l~s~ 1053 (1101)
+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. .....-.+-.|+|+|+...++++|
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 7776 7876665557889999999999999988854332211 001112345899999554455555
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-06 Score=88.45 Aligned_cols=186 Identities=10% Similarity=0.083 Sum_probs=126.2
Q ss_pred CCeeEEEEecCCCEEEEEe-CC--eEEEEECCCCceeeEecCCCCCeEE--EEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 806 EAVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg--~i~vwd~~~~~~~~~~~~~~~~i~~--l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
.....+.|+ ++.++.+.+ +| .|+++|+++++.+..+.... .... +++. ++++.+..-.++.+.+||..+.+
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence 335788998 665555555 55 79999999999998876433 3333 4444 45555555678999999999999
Q ss_pred EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC
Q 001318 881 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 959 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d 959 (1101)
.+.++..-. ....+++|++.|+.+..++.|.++|..+.+......... .+..- ..+..+.+. +|+..+.. .+
T Consensus 119 ~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 119 QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTS
T ss_pred EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccC
Confidence 999887532 223334578777777667889999999866544332221 11110 123346665 77765554 67
Q ss_pred CeEEEEEcCCceeeeeccCCCC----------CCCeeEEEEcCCCCEEEEEEc
Q 001318 960 TQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFL 1002 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h----------~~~i~~l~~spdg~~l~s~s~ 1002 (1101)
+.|.+.|.++++.+..+...+- ..-...|||+|+++.|++.+.
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 8999999999999888765321 235688999999888776664
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.6e-07 Score=91.44 Aligned_cols=198 Identities=13% Similarity=0.079 Sum_probs=132.2
Q ss_pred ceeeEecCCCCC--eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE--EEEcCCCCEEEEEeCCCc
Q 001318 837 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG--LAFSHALNVLVSSGADSQ 912 (1101)
Q Consensus 837 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~--l~~s~dg~~l~s~s~D~~ 912 (1101)
+.+.++. |... ...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -...... +++.. ++..+..-.++.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g-~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDG-ERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECS-SCEEEEESSSCE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeC-CEEEEEEccCCE
Confidence 4455563 4433 4788887 5788888889999999999999988877 2233333 55532 234444456889
Q ss_pred eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCC---CeeEE
Q 001318 913 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHA 988 (1101)
Q Consensus 913 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~---~i~~l 988 (1101)
+.+||.++.+....... . + ....+++|++.|+++ .++.|.++|..+.+.+..+....+.. .+..+
T Consensus 118 v~V~D~~Tl~~~~ti~~--~-~--------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL 186 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRY--S-G--------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL 186 (268)
T ss_dssp EEEEETTTTEEEEEEEC--S-S--------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEEECCcCcEEEEEeC--C-C--------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence 99999999765443322 1 1 123344678888775 57899999999999988876543333 34667
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCC----CCCCCCccceEEEEeCCCCCEEEEE
Q 001318 989 TFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA----GVSSSNVHPLVIAAHPQEPNEFALG 1053 (1101)
Q Consensus 989 ~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~i~~~~~d~~~l~s~ 1053 (1101)
.|. +|+..+....+..|.+.|..+|+.+..+......+. .+ ...-.+-.|+|+|+..++++||
T Consensus 187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~-~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 187 ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVT-NPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCC-CTTCCEEEEEECTTTCCEEEEE
T ss_pred EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccccc-CcCCceEEEEEcCCCCEEEEeC
Confidence 777 787665555688999999999999998885422110 00 1112244899999666666766
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.7e-05 Score=91.39 Aligned_cols=167 Identities=17% Similarity=0.154 Sum_probs=104.3
Q ss_pred EEEEecCCCcEEEEEec--------------------c----CeEEEEEeecceEeeeecC--ccc----CeeE-EEEc-
Q 001318 851 FLAFHPQDNNIIAIGMD--------------------D----SSIQIYNVRVDEVKSKLKG--HSK----RITG-LAFS- 898 (1101)
Q Consensus 851 ~l~~sp~d~~~lasg~~--------------------d----g~v~vwd~~~~~~~~~l~~--h~~----~V~~-l~~s- 898 (1101)
.++++| +..+++++.. | +.|.-+|..+|+.+-.++. |.. .+.. +.+.
T Consensus 250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~ 328 (582)
T 1flg_A 250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDY 328 (582)
T ss_dssp CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEE
T ss_pred CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEee
Confidence 467888 5556666653 2 6899999999998876642 321 1111 2222
Q ss_pred --CCCC---EEEEEeCCCceEEEeCCCcccccceeeec----------CCCC-------CC--------CC---------
Q 001318 899 --HALN---VLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGR-------TP--------TA--------- 939 (1101)
Q Consensus 899 --~dg~---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------~~~~-------~~--------~~--------- 939 (1101)
.+|+ .++.++.+|.+.++|..+|+......... ..+. .. ..
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 4674 78889999999999999987543221110 0000 00 00
Q ss_pred ---CCCeEEEEcCCCcEEEE-Ee---------------------------------CCeEEEEEcCCceeeeeccCCCCC
Q 001318 940 ---QSDTRVQFHQDQIHFLV-VH---------------------------------ETQLAIFETTKLECVKQWVPRESS 982 (1101)
Q Consensus 940 ---~~v~~~~~s~dg~~la~-~~---------------------------------d~~v~vwd~~~~~~~~~~~~~~h~ 982 (1101)
..-..++++|+...+++ .. ++.|..||+.+++.+-.....
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--- 485 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--- 485 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC---
Confidence 00124577777655544 21 478999999999887555421
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 983 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 983 ~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.++..-.+...+.+++.++.||.++.||.++|+.+-+++
T Consensus 486 ~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 486 LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 122222222356778889999999999999999999887
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-05 Score=84.60 Aligned_cols=228 Identities=13% Similarity=0.086 Sum_probs=140.9
Q ss_pred CEEEEEeCCeEEEEECCCCcee-----eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCe
Q 001318 818 SYVMSASGGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 892 (1101)
Q Consensus 818 ~~la~~sdg~i~vwd~~~~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V 892 (1101)
.+|+.+..+.|+.+++...... ..+......+..++|+++++.++++-..++.|.+++.........+.......
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4566666568888888754321 11221224577999999445555555567899999987654333333223467
Q ss_pred eEEEEcCCCCEEE-EEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--e--CCeEEEEEc
Q 001318 893 TGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H--ETQLAIFET 967 (1101)
Q Consensus 893 ~~l~~s~dg~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~--d~~v~vwd~ 967 (1101)
.++++++++..|. +-...+.|.+++++..... ... ..+. .....++++|++..|..+ . .+.|..+++
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--~~~--~~~~----~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~ 153 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR--VLF--DTGL----VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEE--CSSC----SSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE--EEE--ECCC----CCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence 8999999765555 4455678999998763311 111 1111 245899999976655553 2 368888887
Q ss_pred CCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 968 TKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 968 ~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
.... ...+.. ........++++++++.|+.+. ..+.|.++|.........+. .. -.|..++.. +
T Consensus 154 dg~~-~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~------~~-----~~P~gi~~d--~ 218 (267)
T 1npe_A 154 DGTN-RRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE------GL-----QYPFAVTSY--G 218 (267)
T ss_dssp TSCC-CEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE------CC-----CSEEEEEEE--T
T ss_pred CCCC-cEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec------CC-----CCceEEEEe--C
Confidence 6432 222211 1234688999999877665444 56789999998654433222 11 224466654 3
Q ss_pred CCEEEEEecCCcEEEEeccCCC
Q 001318 1047 PNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+.++++....+.|.+++..+++
T Consensus 219 ~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 219 KNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEECCCCeEEEEeCCCCC
Confidence 4555666567899999998887
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-05 Score=94.44 Aligned_cols=110 Identities=12% Similarity=0.068 Sum_probs=69.1
Q ss_pred EEEecC-CCcEEEEeC-CCCceEEEecCccc-C---------e-EEEeeeecCCccEEEEEecCCcEEEEecCCCCceee
Q 001318 469 VITCGD-DKTIKVWDA-TNGAKQYIFEGHEA-P---------V-YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 535 (1101)
Q Consensus 469 l~s~~~-d~~i~iwd~-~~~~~~~~~~~h~~-~---------v-~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 535 (1101)
++.++. ++.|.-+|. .+|+.+.++..... . + ..+++ .+..++.++.|+.|..+|..+++.+..
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 555565 789999999 89999887653221 0 0 11121 124788888899999999999888776
Q ss_pred ecCCCCce-eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEcC
Q 001318 536 YEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 536 ~~~~~~~v-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 601 (1101)
........ ..+..+ + .+ .+..+++++. ++.|+.+|..+|+.+..+..
T Consensus 141 ~~~~~~~~~~~~~~~-------------P--~v----~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQA-------------P--FV----AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EECCCGGGTCBCCSC-------------C--EE----ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ecCCCCCccceeccC-------------C--EE----ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 54322100 000000 0 00 1234555554 79999999999999988764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.8e-06 Score=85.77 Aligned_cols=184 Identities=9% Similarity=0.054 Sum_probs=124.7
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEE--EEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 806 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~--l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
.....+.|+. +.++.+.+ +|.|+++|+++++.++.+ -...... +++. ++++.+..-.++.+.+||..+.+.+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 3456788873 44444444 689999999999998887 2233333 5554 4566666667899999999999999
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCe
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 961 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~ 961 (1101)
.++..- ..-+.++ +|++.|+.+..++.|.++|..+.+.............. ..+..+.|. +|+..+.. ..+.
T Consensus 130 ~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 130 RTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCe
Confidence 988753 2224455 57888887777889999999987654433322211110 133456666 77655554 6789
Q ss_pred EEEEEcCCceeeeeccCCC-----------CCCCeeEEEEcCCCCEEEEEE
Q 001318 962 LAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1001 (1101)
Q Consensus 962 v~vwd~~~~~~~~~~~~~~-----------h~~~i~~l~~spdg~~l~s~s 1001 (1101)
|.+.|.++++.+..+...+ -..-.+.|||+|+++.|+..+
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999999988776421 124678999999877665554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=6.9e-05 Score=87.93 Aligned_cols=217 Identities=11% Similarity=-0.021 Sum_probs=122.9
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCC------eeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGG------VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 492 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~------V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 492 (1101)
+..+++++.++.|.-+|..+|+.+-....-...... -..++. .+. .++.++.|+.|.-+|..+|+.+...
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEeee
Confidence 455666666445999999999876543211110000 012222 233 4677788999999999999998776
Q ss_pred cCccc----CeE-EEeeeec-CCcc-EEEEEec------CCcEEEEecCCCCceeeecCCCCceeE-----EEEc-cCCc
Q 001318 493 EGHEA----PVY-SVCPHHK-ENIQ-FIFSTAL------DGKIKAWLYDNLGSRVDYEAPGRWCTT-----MAYS-ADGT 553 (1101)
Q Consensus 493 ~~h~~----~v~-~v~~~~~-~~~~-~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~v~~-----~~~s-~~~~ 553 (1101)
..... .+. +..+... .+++ .++.++. ++.|+.+|..+++.+.........+.- .... ..+.
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 53221 111 1111111 1222 5666543 789999999998887765432211100 0000 0000
Q ss_pred eEEecc--------------ccCceeEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCce
Q 001318 554 RTYQGF--------------RKRSLGVVQFDTTKNRFLAAGD--------------------D----FSIKFWDMDSVQL 595 (1101)
Q Consensus 554 ~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~ 595 (1101)
..+.+. ........+++|....++.+.. | +.|..+|..+|+.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 000000 0112234677787777777653 2 5899999999999
Q ss_pred eEEEcCCCCC----CCcCe-EEEc---cCCC---EEEEEeCCCcEEEEEecCccc
Q 001318 596 LTSIDADGGL----PASPR-IRFN---KDGC---LLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 596 ~~~~~~~~~~----~~v~~-~~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
+..++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+|+.
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 9988643221 01111 2222 4674 788899999999999999943
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-05 Score=84.15 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=146.6
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC--------------------CCCCeEEEEEecCCCcEEEEE
Q 001318 807 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--------------------PPPAATFLAFHPQDNNIIAIG 865 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~--------------------~~~~i~~l~~sp~d~~~lasg 865 (1101)
...+++++++++++.++. ++.|..||..++... .+.. ....+..+++.+++++ |.++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 456788999998677776 789999998765432 2210 0135788999973454 4445
Q ss_pred eccCeEEEEEeecceEeeeec----C-cccCeeEEEEcC-CCCEEEEEeC-----------------CCceEEEeCCCcc
Q 001318 866 MDDSSIQIYNVRVDEVKSKLK----G-HSKRITGLAFSH-ALNVLVSSGA-----------------DSQLCVWSSDGWE 922 (1101)
Q Consensus 866 ~~dg~v~vwd~~~~~~~~~l~----~-h~~~V~~l~~s~-dg~~l~s~s~-----------------D~~v~iwd~~~~~ 922 (1101)
...+.|..+|..+++. ..+. + .......+++.+ +|++.++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5555688888765532 2221 1 113468899999 9987776532 3568888877654
Q ss_pred cccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCce--eeeeccCCCCCCCeeEEEEcCCCCEEE
Q 001318 923 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLVY 998 (1101)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~--~~~~~~~~~h~~~i~~l~~spdg~~l~ 998 (1101)
... ..... .....++++++|+.|.++ ..+.|.+|++.... ....+.. ..+ ...+++.++|++.+
T Consensus 177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEE
T ss_pred EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEE
Confidence 211 11111 134679999999876664 56799999987521 1111110 123 78899999999777
Q ss_pred EEEc----------CCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 999 ACFL----------DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 999 s~s~----------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+... .+.|..+|. .|+.+..+. .+.+..- ..+..+++. ++++.++....+.|.++++....
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~----~~~g~~~--~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP----LPPPFAG--EHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE----CCTTTTT--SCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEE----CCCCCcc--ccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 6654 467888886 477776665 2222111 112256663 46666776678899999986443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.3e-05 Score=90.41 Aligned_cols=78 Identities=18% Similarity=0.125 Sum_probs=51.2
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCe-eEEEEcCCCCEE
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVL 904 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l 904 (1101)
|.|.-||+.+++.+...+... ....-.+.. .+.+++.|+.||.++.||.++|+.+-+++...+.+ .-+.+..||+..
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEECCCCCEEeEecCCC-CccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 678999999998877664221 111111222 45577779999999999999999998776443222 235566777643
Q ss_pred E
Q 001318 905 V 905 (1101)
Q Consensus 905 ~ 905 (1101)
+
T Consensus 531 v 531 (599)
T 1w6s_A 531 V 531 (599)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.6e-06 Score=81.69 Aligned_cols=202 Identities=11% Similarity=0.121 Sum_probs=130.3
Q ss_pred ceeeEecCCCC--CeEEEEEecCCCcEEEEEeccC--eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE-EEeCCC
Q 001318 837 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADS 911 (1101)
Q Consensus 837 ~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~-s~s~D~ 911 (1101)
+.+.++. |.. -...+.|+. +.++.+.+.+| .|+++|+.+++.+..+.-... ........++..|. ..-.++
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence 4555663 543 356899985 56777777654 999999999999887753322 22222233344444 445688
Q ss_pred ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCC---CCeeE
Q 001318 912 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITH 987 (1101)
Q Consensus 912 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~---~~i~~ 987 (1101)
.+.+||.++.+........ + ....+++|++.|+++ .++.|.++|..+.+.+..+....+. ..+..
T Consensus 86 ~v~v~D~~tl~~~~ti~~~---~--------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP---G--------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEEEETTTTEEEEEEECS---S--------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEEECCcCcEEEEEeCC---C--------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 9999999986654332221 1 123444677766664 5778999999999988887654332 23456
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCC---CCCccceEEEEeCCCCCEEEEEe
Q 001318 988 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS---SSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 988 l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
+.+. +|+..+..-.+..|.+.|..+|+.+..+......+.... ...-.+-.|+|+|+..++++||-
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6665 777665555678999999999999998885543322100 11123458999996555566663
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.49 E-value=0.0097 Score=75.16 Aligned_cols=214 Identities=11% Similarity=0.107 Sum_probs=118.3
Q ss_pred cCccccCCCcccccc-ccCCCCCCCCeeEEEE---ecC-CCEEEEEe-----------CCeEEEEECCCCceeeEe-cCC
Q 001318 783 APQLWQPPSGIMMTN-DVTDSNPEEAVPCFAL---SKN-DSYVMSAS-----------GGKISLFNMMTFKTMATF-MPP 845 (1101)
Q Consensus 783 ~~~lw~~~~g~~~~~-~~~~~~~~~~i~~~~~---s~d-g~~la~~s-----------dg~i~vwd~~~~~~~~~~-~~~ 845 (1101)
.+++.|..+...+.. .+. ....+.+++. ..+ ..++++|. .|.|++|++..++..... ...
T Consensus 808 ~i~lidp~t~~~i~~~~l~---~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v 884 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFL---QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEV 884 (1158)
T ss_dssp EEEEEETTTCCEEEEEECC---TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEeCCCCeEEEEEeCC---CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEc
Confidence 455556555543321 121 3344555543 222 46888774 156999998744322111 123
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 925 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~ 925 (1101)
.+.+++++-- +|++||.. ...|++|++...+.+..-..+-..|..+.....+.+++.|+.-..|.+...+..+
T Consensus 885 ~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~--- 957 (1158)
T 3ei3_A 885 KGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME--- 957 (1158)
T ss_dssp SSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT---
T ss_pred CCcCEEEeee--CCEEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC---
Confidence 5778887755 45555543 5789999998655333111111223333333357789999887778777654322
Q ss_pred ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCc-------e---eeeeccCCCCCCCeeEEE---EcC
Q 001318 926 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-------E---CVKQWVPRESSAPITHAT---FSC 992 (1101)
Q Consensus 926 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~-------~---~~~~~~~~~h~~~i~~l~---~sp 992 (1101)
..+........+ ..++++.|-.++.++++-.++.+.++..... + ....+.. ...|+++. +.+
T Consensus 958 ~~L~~~a~D~~~--~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhl---G~~vt~~~~~sl~~ 1032 (1158)
T 3ei3_A 958 GNFEEIARDFNP--NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL---GEFVNVFCHGSLVM 1032 (1158)
T ss_dssp TEEEEEEECCSC--BCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEEC---SSCEEEEEECCSCC
T ss_pred CeEEEEEeeccc--ccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeC---CCcEeeEEeeeeec
Confidence 122222222222 4678888877776666667888888865431 1 1122221 45677775 233
Q ss_pred C---------CCEEEEEEcCCeEEEEEc
Q 001318 993 D---------SQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 993 d---------g~~l~s~s~dg~v~vwd~ 1011 (1101)
. ...++.++.+|.|.+.-.
T Consensus 1033 ~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1033 QNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp C-------CEEEEEEEEETTSCEEEEEE
T ss_pred CCCccccccccceEEEEecCCEEEEEEE
Confidence 2 234777888999887643
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-05 Score=79.44 Aligned_cols=188 Identities=9% Similarity=0.086 Sum_probs=125.3
Q ss_pred CCCeeEEEEecCCCEEEEEe-C--CeEEEEECCCCceeeEecCCCCC-eEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 805 EEAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
......+.|+. +.++.+.+ + +.|+.+|+++++.++.+.-.... --.+++. ++++....-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 44567899986 44444444 3 48999999999999887643322 1334444 45666666788999999999999
Q ss_pred EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC
Q 001318 881 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 959 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d 959 (1101)
.+.++..-.. =+.++ +|+..|+.+..+++|.++|..+.+......... .+.. -..+..+.+. +|+..+.. ..
T Consensus 97 ~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~--~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRP--LDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcc--cccceeeEEe-CCEEEEEECCC
Confidence 9998874332 24444 577777766678889999999866543332221 1110 0123344544 67655554 67
Q ss_pred CeEEEEEcCCceeeeeccCCC-----------CCCCeeEEEEcCCCCEEEEEEc
Q 001318 960 TQLAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACFL 1002 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~-----------h~~~i~~l~~spdg~~l~s~s~ 1002 (1101)
..|.+.|..+++.+..+...+ -..-.+.||++|+++.|+..+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 899999999999988776431 1235688999998877666553
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-05 Score=84.01 Aligned_cols=251 Identities=8% Similarity=0.011 Sum_probs=145.6
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC------CCCCCCeeEEEE
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD------SNPEEAVPCFAL 813 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~------~~~~~~i~~~~~ 813 (1101)
...+++++++|+.+++...++.|..|+...... ..|.............+ ......+..+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF------------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY 87 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE------------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce------------EEEecccccccccccccccchhccccCCCCceEEE
Confidence 345678899988788888888888887532111 00000000000000000 001134788999
Q ss_pred ec-CCCEEEEEeCCeEEEEECCCCceeeEec----C-CCCCeEEEEEecCCCcEEEEEec-----------------cCe
Q 001318 814 SK-NDSYVMSASGGKISLFNMMTFKTMATFM----P-PPPAATFLAFHPQDNNIIAIGMD-----------------DSS 870 (1101)
Q Consensus 814 s~-dg~~la~~sdg~i~vwd~~~~~~~~~~~----~-~~~~i~~l~~sp~d~~~lasg~~-----------------dg~ 870 (1101)
.+ +++++++...+.|..+|..++.. ..+. + .......+++.+.+|++.++-.. +|.
T Consensus 88 ~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 88 NLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp ETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred cCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 98 66544443466688898775532 2221 1 12346789998833555554322 367
Q ss_pred EEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEE-eCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 871 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 871 v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
|..||..+++....... ......|+|++||++|..+ ...+.|.+|++.+............. + ...+++++
T Consensus 167 v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi~~d~ 238 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNIKRNA 238 (322)
T ss_dssp EEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEEEECT
T ss_pred EEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCeEECC
Confidence 88888776654332221 2335679999999866555 55688999998863321112221111 2 47799999
Q ss_pred CCcEEEEE-e----------CCeEEEEEcCCceeeeeccCCC-C-CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 950 DQIHFLVV-H----------ETQLAIFETTKLECVKQWVPRE-S-SAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 950 dg~~la~~-~----------d~~v~vwd~~~~~~~~~~~~~~-h-~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
+|++.++. . .+.|..+|.. ++.+..+.... . ...++++++ .+++++++....+.|.++++..
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 99877774 3 3578888875 66665554321 1 245777777 4676666666788899998753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00019 Score=77.13 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=142.9
Q ss_pred CCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE
Q 001318 333 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 412 (1101)
Q Consensus 333 ~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 412 (1101)
..+.++...+........++|+|+|+ |+++-..++.|..||..+.. .. .+. -...+.+
T Consensus 19 ~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~~---------------~~~~p~g 76 (306)
T 2p4o_A 19 LAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HAT---------------VEGKVSG 76 (306)
T ss_dssp CCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EEE---------------CSSEEEE
T ss_pred CCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EEe---------------CCCCcee
Confidence 34455555665557789999999998 67777678999999987532 21 111 1236889
Q ss_pred EEEecCCCeEEEEEcC-C-eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce-E
Q 001318 413 VIWSPDGSLFGVAYSR-H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-Q 489 (1101)
Q Consensus 413 l~~spdg~~las~~~d-~-~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~ 489 (1101)
++++++|+++++.... + .|..+|..+++.. ....+. .......++..+++. .+++...++.|+++|..+++. +
T Consensus 77 ia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v 152 (306)
T 2p4o_A 77 LAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSI 152 (306)
T ss_dssp EEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeE
Confidence 9999999976665433 2 4777777777643 222222 222334555555554 566666688999999776532 2
Q ss_pred EEec---------CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccc
Q 001318 490 YIFE---------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 560 (1101)
Q Consensus 490 ~~~~---------~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 560 (1101)
.... +.....+.+ +++. +.++++-...+.|..++++...... ...+ +. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~-----~~~~--~~---------~--- 210 (306)
T 2p4o_A 153 WLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPG-----EPEI--FV---------E--- 210 (306)
T ss_dssp EEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBC-----CCEE--EE---------E---
T ss_pred EEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCC-----ccEE--Ee---------c---
Confidence 2111 111123444 3332 2344555567889999887421110 0000 00 0
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc---cCCCEEEEEeCC
Q 001318 561 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTND 626 (1101)
Q Consensus 561 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~d 626 (1101)
......++++++|+++++....+.|.+++.. ++...............+++|. ++++.|++.+..
T Consensus 211 ~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 211 QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 0122336778888777776677899999975 5543322211222357889998 888877777654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=7.4e-05 Score=76.26 Aligned_cols=219 Identities=11% Similarity=0.109 Sum_probs=135.3
Q ss_pred EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecC-cccCeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 841 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 841 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
.+.+-...+..++|+|++++++++...++.|...|.. ++.++++.- -....-+|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999556777778889999999987 887777631 12457789999999877776667889999886
Q ss_pred Cccccc-ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCC---ceeeeec-----cCCCCCCCeeEEE
Q 001318 920 GWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQW-----VPRESSAPITHAT 989 (1101)
Q Consensus 920 ~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~---~~~~~~~-----~~~~h~~~i~~l~ 989 (1101)
...... .......-+..........++++|.+..|.++ ......+|.... ...+... ....+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 643211 11111111112223567999999999777774 333344554431 1111111 1112345689999
Q ss_pred EcCCC-CEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 990 FSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 990 ~spdg-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
|.|.. ++++.......+.++|.. |+.+..+....-. ++-......+-.|+|.+ +|+ |+..++-+.++++.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~-~~l~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS-RGLSHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG-GGCSSCCCSEEEEEECT-TCC-EEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc-CCcccccCCCCeeEECC-CCC-EEEEcCCceEEEEEe
Confidence 99954 456666677889999965 6677666532110 01001123456899999 676 444576665555543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=8.8e-05 Score=79.76 Aligned_cols=226 Identities=11% Similarity=-0.011 Sum_probs=137.1
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
.....++++++|+.+++-..++.|..|+... .... .|. ....+..++++++|+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-------~~~~-----~~~---------------~~~~p~gia~~~dG~ 84 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-------NQQI-----HAT---------------VEGKVSGLAFTSNGD 84 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-------CEEE-----EEE---------------CSSEEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-------ceEE-----EEe---------------CCCCceeEEEcCCCc
Confidence 3567899999998666666778888776421 1100 010 123578899999999
Q ss_pred EEEEEe-CC--eEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce--Eee--------e
Q 001318 819 YVMSAS-GG--KISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--VKS--------K 884 (1101)
Q Consensus 819 ~la~~s-dg--~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~--~~~--------~ 884 (1101)
++++.. .+ .|..+|..+++....... .......++..+ ++..+++-..++.|+++|..+++ ... .
T Consensus 85 l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~ 163 (306)
T 2p4o_A 85 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN 163 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence 666554 22 477778777765433221 122334556655 66656655568899999976542 210 0
Q ss_pred ecCcccCeeEEEEcCCCCEEEEE-eCCCceEEEeCCC-cccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCe
Q 001318 885 LKGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ 961 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~-s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~ 961 (1101)
..+.-...+.+ ++|+++|..+ ...+.|.+++++. +........... .....++++++|+++++ ...+.
T Consensus 164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~~ 234 (306)
T 2p4o_A 164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYNS 234 (306)
T ss_dssp TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTCC
T ss_pred ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCCe
Confidence 01111234555 7888766544 5567899999875 332111221111 13477999999987766 45788
Q ss_pred EEEEEcCCceeee--eccCCCCCCCeeEEEEc---CCCCEEEEEEcCC
Q 001318 962 LAIFETTKLECVK--QWVPRESSAPITHATFS---CDSQLVYACFLDA 1004 (1101)
Q Consensus 962 v~vwd~~~~~~~~--~~~~~~h~~~i~~l~~s---pdg~~l~s~s~dg 1004 (1101)
|.++|.. ++... .+. .....+++++|. ||++.|+.++..+
T Consensus 235 V~~~~~~-G~~~~~~~~~--~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 235 VVRIAPD-RSTTIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECTT-CCEEEEECGG--GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEECCC-CCEEEEeecc--cccCCceEEEEecccCCCCEEEEECCCC
Confidence 9999986 55422 232 113568999999 8988777666543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-05 Score=95.09 Aligned_cols=159 Identities=12% Similarity=0.092 Sum_probs=95.4
Q ss_pred CcEEEEEe-cCCCeEEEEEecCC----cEEEEeCCCc-ceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 347 SPMSMDFH-PVQQTLLLVGTNVG----DIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 347 ~v~~~~~s-pdg~~llatg~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
.+...+|| |||++|+.+.+.+| .|+++|+.++ +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 67889999 99998665655544 4999999988 63211 0 11 1235689999999
Q ss_pred eEEEEEcC-----CeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCeEEEEEec-CCCcEEEEeCCCCc-eE--E
Q 001318 421 LFGVAYSR-----HIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGA-KQ--Y 490 (1101)
Q Consensus 421 ~las~~~d-----~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~ 490 (1101)
.|+....| ..|.++++.++...... .+. .+......+.|||||+.+++.+.. ....|+++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99888765 36888888876422111 122 223456788999999964333322 24468889988762 22 3
Q ss_pred Ee-cCcccCeEEEeeeecCCccEEEEEecC--C--cEEEEecCC
Q 001318 491 IF-EGHEAPVYSVCPHHKENIQFIFSTALD--G--KIKAWLYDN 529 (1101)
Q Consensus 491 ~~-~~h~~~v~~v~~~~~~~~~~l~s~~~d--g--~i~~wd~~~ 529 (1101)
.+ ....+...++.|+ .++.+++....+ + .|..+++.+
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 33 3344455555432 222344444443 3 455556543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.8e-05 Score=95.02 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=111.3
Q ss_pred CeeEEEEe-cCCCEEEEEe--CC----eEEEEECCCC-ceeeE-ecCCCCCeEEEEEecCCCcEEEEEecc-----CeEE
Q 001318 807 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQ 872 (1101)
Q Consensus 807 ~i~~~~~s-~dg~~la~~s--dg----~i~vwd~~~~-~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~ 872 (1101)
.+...+|| |||++||.+. +| +|+++|+.++ +.+.. +. .....++|+| |++.|+....| ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 57789999 9999999775 23 4999999988 63211 11 1234688999 77777766654 3688
Q ss_pred EEEeecceE--eeeec-CcccCeeEEEEcCCCCEEEEEeC---CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE
Q 001318 873 IYNVRVDEV--KSKLK-GHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 873 vwd~~~~~~--~~~l~-~h~~~V~~l~~s~dg~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
++++.++.. ...+. .......++.|||||++|+..+. ...|.++|+.++.... ....+..+.. .....+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~ 326 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ 326 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence 888876532 12222 22334678899999999886653 3458888888752111 0011222111 2334444
Q ss_pred EcCCCcEEEE-EeC-----CeEEEEEcCCceeeee-ccCCCCCCCeeEEEEcCCCCEEEEEEcCCe--EEEEEc
Q 001318 947 FHQDQIHFLV-VHE-----TQLAIFETTKLECVKQ-WVPRESSAPITHATFSCDSQLVYACFLDAT--VCVFSA 1011 (1101)
Q Consensus 947 ~s~dg~~la~-~~d-----~~v~vwd~~~~~~~~~-~~~~~h~~~i~~l~~spdg~~l~s~s~dg~--v~vwd~ 1011 (1101)
|+. |..|+. +.. ..|..+|+.++..... +..+.....+..+.+. .+.++++...|+. |+++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 444 554444 432 2677778765322222 2211112245556665 3345566777786 455564
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00087 Score=72.55 Aligned_cols=279 Identities=10% Similarity=0.067 Sum_probs=152.3
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..+.++.|.+++..++ ++..+.|.. ..+.+ +-|.... .........+.++.+++ +.
T Consensus 36 ~~~~~v~~~~~~~~~~-~G~~g~i~~-s~DgG--------------~tW~~~~-------~~~~~~~~~~~~i~~~~-~~ 91 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VGVNATLME-TRDGG--------------QTWEPRT-------LVLDHSDYRFNSVSFQG-NE 91 (327)
T ss_dssp SCEEEEEESSSSCEEE-EETTTEEEE-ESSTT--------------SSCEECC-------CCCSCCCCEEEEEEEET-TE
T ss_pred CcEEEEEECCCCcEEE-EcCCCeEEE-eCCCC--------------CCCeECC-------CCCCCCCccEEEEEecC-Ce
Confidence 4688899987777666 555665432 11100 1121110 00001244678899976 55
Q ss_pred EEEEEeCCeEEEEECCCCceeeEec---CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee-eecCcccCeeE
Q 001318 819 YVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRITG 894 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~~ 894 (1101)
.++++..+.|.. ....++.-.... .+...+..+.+.+ ++++++++ .+|.|+. ....|+.-. ....+...+.+
T Consensus 92 ~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~ 167 (327)
T 2xbg_A 92 GWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRN 167 (327)
T ss_dssp EEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEE
T ss_pred EEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEE
Confidence 556555775544 222233322222 2334578888877 67777665 4554432 111122111 12345567899
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeee
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 974 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~ 974 (1101)
+++.+++.+++.+...+..+-+|-. +. ....+... . ...+..+++++++..++++.++.+++.+...++.-.
T Consensus 168 ~~~~~~~~~~~~g~~G~~~~S~d~g-G~--tW~~~~~~--~---~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 168 LNRSPSGEYVAVSSRGSFYSTWEPG-QT--AWEPHNRT--T---SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWG 239 (327)
T ss_dssp EEECTTSCEEEEETTSSEEEEECTT-CS--SCEEEECC--S---SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEC
T ss_pred EEEcCCCcEEEEECCCcEEEEeCCC-CC--ceeECCCC--C---CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeE
Confidence 9999999888776544433334321 11 11111111 1 136788999999998888888888776544344433
Q ss_pred eccCC--CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 975 QWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 975 ~~~~~--~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
.+... .+...+.++++.+++.+++++ .+|.| .+..+.|+.-..+......+. .++ .+.|.+ +..+++
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~--~v~~~~--~~~~~~ 308 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY--KILFFS--PDQGFI 308 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC--EEEEEE--TTEEEE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE--EEEEEC--CCceEE
Confidence 33211 123468999999988877765 47777 455666654443331111111 144 677764 346777
Q ss_pred EecCCcEEEEec
Q 001318 1053 GLSDGGVHVFEP 1064 (1101)
Q Consensus 1053 ~~~dg~v~vW~~ 1064 (1101)
++.+|.|.-++-
T Consensus 309 ~G~~G~i~~~~~ 320 (327)
T 2xbg_A 309 LGQKGILLRYVT 320 (327)
T ss_dssp ECSTTEEEEECC
T ss_pred EcCCceEEEEcC
Confidence 788997766553
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0002 Score=80.75 Aligned_cols=247 Identities=9% Similarity=0.043 Sum_probs=145.6
Q ss_pred CeeEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec-cC----eEEEEEeecc
Q 001318 807 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS----SIQIYNVRVD 879 (1101)
Q Consensus 807 ~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg----~v~vwd~~~~ 879 (1101)
....++++| ++..|.++. .+.|+.+|..++... .+.........++|++ ++++|+++.. ++ .+.+++ ..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 467899998 466666666 588999999875544 3333556688999999 7775555543 22 333344 333
Q ss_pred eEe--eeecCcccCeeEEEEcC-CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 880 EVK--SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 880 ~~~--~~l~~h~~~V~~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
... ..+.. .....+++++| +|.++++-..++.|..++..++... ........ .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 222 22221 23357789999 6777777667788999998865421 11111111 23578999999996666
Q ss_pred E--eCCeEEEEEcCC--cee--eeeccC----CCC---------CCCee-EEEEc--------CCCCEEEEEEcCCeEEE
Q 001318 957 V--HETQLAIFETTK--LEC--VKQWVP----RES---------SAPIT-HATFS--------CDSQLVYACFLDATVCV 1008 (1101)
Q Consensus 957 ~--~d~~v~vwd~~~--~~~--~~~~~~----~~h---------~~~i~-~l~~s--------pdg~~l~s~s~dg~v~v 1008 (1101)
+ ..+.|..++... +.. +..+.. .+. -.... .+++. ++|.++++-...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 3 567899887653 221 111110 010 11233 45553 44666666666788999
Q ss_pred EEcCCceeeeecCCCcccCCCC-------CCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1009 FSAANLKLRCRINPSAYLPAGV-------SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1009 wd~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
++ .+|+.............|. ...--.|..++++|+++.++++-...+.|+..+++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 5665544332100000010 01112577999998656777777777788887764
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00054 Score=73.80 Aligned_cols=208 Identities=6% Similarity=-0.035 Sum_probs=129.7
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECCC---Cceee-EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMT---FKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~---~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
...+.+++|++++..|+.+. ++.|..+++.+ +.... .+.........+++++.+++++++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578999999887777776 58899999876 12222 23323345688999874556666656778999999865
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeCC--CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
......+........++++.|++..|..+... +.|...+++..... .... ... .....+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~--~~~~-~~~-----~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT-ENI-----QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--EEEC-SSC-----SCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE--EEEE-CCC-----CCceEEEEeccCCEEEE
Confidence 43222223233457899999876666555543 57888887653211 1111 111 24578999998777766
Q ss_pred E--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 957 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 957 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+ ..+.|..+|+....................+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 4 5678999998753322211111223456788885 45556666677889999988887665554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00036 Score=78.57 Aligned_cols=249 Identities=8% Similarity=0.018 Sum_probs=146.9
Q ss_pred CeeEEEEecC--CCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc---C-eEEEEEeecc
Q 001318 807 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVD 879 (1101)
Q Consensus 807 ~i~~~~~s~d--g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g-~v~vwd~~~~ 879 (1101)
....++++|+ +..|.++. .+.|+.+|..++.... +.........+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4678999984 45566665 5889999998766543 444555689999999 77754443311 1 2333332221
Q ss_pred eE-eeeecCcccCeeEEEEcC-CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 880 EV-KSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 880 ~~-~~~l~~h~~~V~~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
.. ...+. .......+++.| +|.+.++-..++.|+.++..++.... ........ .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCC-----CCcccEEEeCCCCEEEEE
Confidence 10 01111 223356788999 67766666667889999887654311 11111111 123579999999966664
Q ss_pred --eCCeEEEEEcC--Cceee--eecc----CCCC---------CCCeeEEEE---------cCCCCEEEEEEcCCeEEEE
Q 001318 958 --HETQLAIFETT--KLECV--KQWV----PRES---------SAPITHATF---------SCDSQLVYACFLDATVCVF 1009 (1101)
Q Consensus 958 --~d~~v~vwd~~--~~~~~--~~~~----~~~h---------~~~i~~l~~---------spdg~~l~s~s~dg~v~vw 1009 (1101)
....|+.++.. ++... ..+. ..+. -.....+++ .++|.++++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56789998765 23211 1111 0011 234678999 7788877777778899999
Q ss_pred EcCCceeeeecCCCc---c-cCCC---CCCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1010 SAANLKLRCRINPSA---Y-LPAG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1010 d~~~~~~~~~~~~~~---~-~~~~---~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
+. +|.......... . ...| ....--.|..|++.|.++.++++-...+.|+.++++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 665543332111 0 0001 001123477899996577777877777888888764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.24 E-value=8.7e-05 Score=89.35 Aligned_cols=238 Identities=10% Similarity=-0.028 Sum_probs=130.7
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCC-eEEEEEecCCCcEEEEEe-cc-----CeEEEEEe
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGM-DD-----SSIQIYNV 876 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~-~d-----g~v~vwd~ 876 (1101)
....++++..++++++.|+ +..+.+||..+.+-...-..+... -.++++.+ ++++++.|+ .+ ..+.+||.
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence 3345678889999999987 467999998875433221112121 23455666 788999988 44 47999999
Q ss_pred ecceEeee--e--cCcccCeeEEEEcCCCCEEEEEeCCC---------ceEEEeCCCcccccceeeecCCCC---CCCCC
Q 001318 877 RVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADS---------QLCVWSSDGWEKQKNRFLQIPTGR---TPTAQ 940 (1101)
Q Consensus 877 ~~~~~~~~--l--~~h~~~V~~l~~s~dg~~l~s~s~D~---------~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~ 940 (1101)
.+.+-... . ......-....+..++..++.++.|+ .+..||..+..-.. ........ .....
T Consensus 322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~ 399 (656)
T 1k3i_A 322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAM 399 (656)
T ss_dssp TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCB
T ss_pred CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCC
Confidence 77543221 0 00000000112234555556665544 46778877643211 11111100 00001
Q ss_pred CCeEEEEcC-CCcEEEEE-eCC-----------eEEEEEcCCceeeeeccCCCC-CCCeeEEEEcCCCCEEEEEEcC---
Q 001318 941 SDTRVQFHQ-DQIHFLVV-HET-----------QLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLD--- 1003 (1101)
Q Consensus 941 ~v~~~~~s~-dg~~la~~-~d~-----------~v~vwd~~~~~~~~~~~~~~h-~~~i~~l~~spdg~~l~s~s~d--- 1003 (1101)
.-.++.|.. +++.++++ .++ .+.+||..+...........+ ...-.++++.|||++++.|+.+
T Consensus 400 ~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 400 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence 224555544 67777774 321 688899887765443201111 2233456778899999999865
Q ss_pred --------CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEec
Q 001318 1004 --------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1055 (1101)
Q Consensus 1004 --------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~ 1055 (1101)
..+.+||..+++... +. .++.....+ -.....| |+++++.|+.
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~W~~-~~---~~~~~R~~h----s~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDTFYK-QN---PNSIVRVYH----SISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEE-CC---CCSSCCCTT----EEEEECT-TSCEEEEECC
T ss_pred CcCCCCcccceEEEcCCCCceee-cC---CCCCccccc----cHhhcCC-CcEEEecCCC
Confidence 468999998876543 22 111110011 1233446 7889999885
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.22 E-value=0.029 Score=68.76 Aligned_cols=540 Identities=8% Similarity=0.051 Sum_probs=267.2
Q ss_pred CCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeee-ccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l-~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
...|.+|.-..+|.+ -.|..+| +..||-.. ....... ......|.++.-..+|. |..|+.+| +..+|..+
T Consensus 21 ~n~V~~I~qD~~G~l-WigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSEGLI-WIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTTSCE-EEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTT
T ss_pred cceEEEEEECCCCCE-EEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCC
Confidence 457999998888854 4456777 55666332 2111000 11235688888777764 44455554 78999877
Q ss_pred CceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 486 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 486 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
++...........|.++.. .++ .|..++.+ -|..+|..+.... .+... . .+.....+.
T Consensus 92 ~~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~----------~------~~l~~~~i~ 149 (758)
T 3ott_A 92 DRYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTR----------R------NGLPNNTIY 149 (758)
T ss_dssp TEECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEE-EECHH----------H------HCCSCSCEE
T ss_pred CEEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEE-EeccC----------C------CCcCCCeEE
Confidence 6543211112234665542 244 45555555 5777877653321 11000 0 000011233
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC----CCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
.+....++...+ +.. +-|..++..+++.. .+.... ....|.++....++..|..|+. +-+..++..++ ..
T Consensus 150 ~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~-~~- 223 (758)
T 3ott_A 150 SIIRTKDNQIYV-GTY-NGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG-QI- 223 (758)
T ss_dssp EEEECTTCCEEE-EET-TEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT-EE-
T ss_pred EEEEcCCCCEEE-EeC-CCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC-eE-
Confidence 444444444443 444 35778887766543 222111 1123667777777776556664 45777886654 21
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..+...... .+. .+....++... .+.. +-+.+++....
T Consensus 224 ~~~~~l~~~----------~i~------------------------------~i~~d~~g~lW-igT~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 224 KQTEAFHNN----------SIK------------------------------SLALDGNGDLL-AGTD-NGLYVYHNDTT 261 (758)
T ss_dssp EEEEEEEEE----------EEE------------------------------EEEECTTCCEE-EEET-TEEEEECCTTS
T ss_pred EeccCCCCC----------eEE------------------------------EEEEcCCCCEE-EEeC-CceeEEecCCC
Confidence 111100000 000 00111123333 3333 34555554432
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
....-......+..-....|.++....+|...+ ++..| +.++... ..+ +.+... ....
T Consensus 262 ~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~-~~~------------~~~~~~-------~~~~ 319 (758)
T 3ott_A 262 PLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYN-SAL------------QFIPIS-------QITG 319 (758)
T ss_dssp CCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCC-C-C------------EEEEHH-------HHSC
T ss_pred cEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccC-Cce------------eEEecc-------cCCC
Confidence 110000000000111345688998888887444 44456 3332210 000 000000 0000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCc--eeeEecC-------CCCCeEEEEEecCCCcEEEEEeccCeEE
Q 001318 802 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK--TMATFMP-------PPPAATFLAFHPQDNNIIAIGMDDSSIQ 872 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~--~~~~~~~-------~~~~i~~l~~sp~d~~~lasg~~dg~v~ 872 (1101)
......|.++....+|.+.+.. .+.+..++..++. ....+.. ....|.++.-.. ++++.+ |+ ++-+.
T Consensus 320 ~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWi-gt-~~GL~ 395 (758)
T 3ott_A 320 TGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK-EQQLWI-AT-DGSIN 395 (758)
T ss_dssp SCCCCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT-TSCEEE-EE-TTEEE
T ss_pred CCCCceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECC-CCCEEE-Ee-CCcHh
Confidence 0124568888888888766554 4567777765432 1222221 123588888777 565444 55 45788
Q ss_pred EEEeecceEeeee--cC----cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccc---cc---eeeecCCCCCCCCC
Q 001318 873 IYNVRVDEVKSKL--KG----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ---KN---RFLQIPTGRTPTAQ 940 (1101)
Q Consensus 873 vwd~~~~~~~~~l--~~----h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~---~~---~~~~~~~~~~~~~~ 940 (1101)
.||..+++..... .. ....|.++....+|.+.+ |+..+-|.++|..+.... .. .......+- ...
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~ 472 (758)
T 3ott_A 396 RYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL--SGM 472 (758)
T ss_dssp EEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC--SCS
T ss_pred hcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceeccccccccccc--ccc
Confidence 9998776543221 11 234588888877776555 555555888885431000 00 001111111 113
Q ss_pred CCeEEEEcCCCcEEE-EEeCCeEEEEEcCCceeeeeccCC-CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeee
Q 001318 941 SDTRVQFHQDQIHFL-VVHETQLAIFETTKLECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC 1018 (1101)
Q Consensus 941 ~v~~~~~s~dg~~la-~~~d~~v~vwd~~~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~ 1018 (1101)
.|.++...++|...+ .+..+.|..||..+++........ .....+.++....+|.+.+. +.. -+..||..+++...
T Consensus 473 ~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~ 550 (758)
T 3ott_A 473 FINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHG-GVMRINPKDESQQS 550 (758)
T ss_dssp CEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETT-EEEEECC--CCCCB
T ss_pred eeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecC-ceEEEecCCCceEE
Confidence 588899999999776 344566888999887655432110 11346888888888887654 444 47888877665432
Q ss_pred ecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1019 RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1019 ~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+. ...++. ..+. ++... ++++.+ ++..| |..++..+.+
T Consensus 551 -~~-~~gl~~----~~i~--~i~~~--~g~lWi-~t~~G-l~~~~~~~~~ 588 (758)
T 3ott_A 551 -IS-FGSFSN----NEIL--SMTCV--KNSIWV-STTNG-LWIIDRKTMD 588 (758)
T ss_dssp -CC-CCC-------CCEE--EEEEE--TTEEEE-EESSC-EEEEETTTCC
T ss_pred -ec-ccCCCc----cceE--EEEEC--CCCEEE-ECCCC-eEEEcCCCce
Confidence 21 111221 2244 55542 455444 44444 7778877654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0012 Score=72.18 Aligned_cols=205 Identities=10% Similarity=-0.013 Sum_probs=132.2
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
..+..++|++.+..|.... .+.|+.+++........+.........+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3478999998877777776 68899999886654444443344567899997456666666667899999986443222
Q ss_pred eecCcccCeeEEEEcCCCCEEEEEe-CC-CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eC
Q 001318 884 KLKGHSKRITGLAFSHALNVLVSSG-AD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 959 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~dg~~l~s~s-~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d 959 (1101)
.+........++++.|.+..|..+. .. +.|...+++..... ... ..+. .....++++|++..|..+ ..
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~--~~~~----~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--IIA--DTHL----FWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--ESC--CSSC----SCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE--EEE--ECCC----CCcceEEEeCCCCEEEEEECCC
Confidence 2333334568999998666555444 34 67888887763211 111 1111 245789999877766664 56
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.|..+|+........+. ........+++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 225 ~~I~~~~~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 225 HVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TEEEEEETTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCceEEEEe--CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 789999987543322221 22446778888 345555666677889988877777665554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00063 Score=74.31 Aligned_cols=237 Identities=12% Similarity=0.044 Sum_probs=146.4
Q ss_pred eeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecC
Q 001318 808 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 887 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 887 (1101)
.+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++........+..
T Consensus 36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred Cccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 34555555 346666666778888887655444443 3445889999984566666655778999999876543333332
Q ss_pred cccCeeEEEEcCCCCE-EEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eC-CeEE
Q 001318 888 HSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQLA 963 (1101)
Q Consensus 888 h~~~V~~l~~s~dg~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d-~~v~ 963 (1101)
......++++.+.+.. .++-...+.|.+.++++... .... ..+ . .....++++|.+..|..+ .. +.|.
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~--~~~-l---~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLL--WQS-L---EKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEE--CTT-C---SCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--EEEE--eCC-C---CCcceEEEecCcCeEEEeccCCCCEEE
Confidence 2344578999875544 45555667899999876431 1111 111 1 245889999976666553 34 7788
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEE
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1042 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~ 1042 (1101)
.+++...... .+.. ..-.....|+|+|++..|+.+. ..+.|..+|++.......+... .-.|..+++
T Consensus 186 r~~~dG~~~~-~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~giav 253 (349)
T 3v64_C 186 ASSMDGSGRR-IIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAITV 253 (349)
T ss_dssp EEETTSCSCE-ESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEEEE
T ss_pred EEeCCCCCcE-EEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEEEE
Confidence 8888754332 2211 2244678999998777665554 5678999998754332222211 123446777
Q ss_pred eCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1043 HPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1043 ~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
. ++.+.++-...+.|...+..+|+
T Consensus 254 ~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 254 F--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCC
T ss_pred E--CCEEEEecCCCCeEEEEEccCCC
Confidence 4 35667777777888888866666
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0005 Score=76.35 Aligned_cols=205 Identities=10% Similarity=-0.017 Sum_probs=132.8
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
..+..++|++.+..|+... .+.|+.+++........+.........+++++.+++++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4578999998777777766 68899999886654444443334567889997456666666667789888876433222
Q ss_pred eecCcccCeeEEEEcCCCCEEEEEeC-C-CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eC
Q 001318 884 KLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 959 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~dg~~l~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d 959 (1101)
.+........++++.|++..|..+.. . +.|...+++..... .... .+. .....++|+|++..|..+ ..
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~~--~~~----~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--IIAD--THL----FWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEEC--SSC----SCEEEEEEEGGGTEEEEEETTT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE--EEEE--CCC----CCeeeEEEeCCCCEEEEEECCC
Confidence 23333355789999987766665543 3 56777777653211 1111 111 235789999877766664 56
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.|..+|+........+. ........|++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 268 ~~I~~~d~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 268 HVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TEEEEECTTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCeeEEEEE--CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 789999987543322222 22446788888 345566666678889999977887766655
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00096 Score=68.01 Aligned_cols=212 Identities=8% Similarity=0.027 Sum_probs=126.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
-...+..++|+|++..|+++...++.|...|.. ++.+...+ +.+ ....-.|++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 446799999999988888888889999999998 77665422 122 24678899999998777
Q ss_pred EEEcCCeEEEEEccCCceee--eeeee----ccccCCeeEEEEcCCCCeEEEEEecCCC-cEEEEeC-CCCceEEEec--
Q 001318 424 VAYSRHIVQIYSYHGGDEVR--QHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDK-TIKVWDA-TNGAKQYIFE-- 493 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~--~~~~l----~~h~~~V~~~~~s~d~~~~~l~s~~~d~-~i~iwd~-~~~~~~~~~~-- 493 (1101)
+.-.++.+.++++.....+. ....+ .........++|+|+++.+++ +.-.+. .|..|+- ..+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCceeeecch
Confidence 76567889999887654322 11111 123456789999999985333 333332 4555541 1122222221
Q ss_pred -----CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 494 -----GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 494 -----~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
.+...+.++++++. .+++++.....+.+..+|.... ....+....+. .+ + ...-.....++
T Consensus 165 ~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~--------~~---l-~~~~~qpEGia 230 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGS--------RG---L-SHNIKQAEGVA 230 (255)
T ss_dssp HHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTG--------GG---C-SSCCCSEEEEE
T ss_pred hhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCcc--------CC---c-ccccCCCCeeE
Confidence 12335678888764 4567777777888888886642 32222221100 00 0 00011334466
Q ss_pred EcCCCCEEEEEeCCCcEEEEEC
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDM 590 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~ 590 (1101)
|+++|+ ++..++.+.++.+.-
T Consensus 231 ~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 231 MDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp ECTTCC-EEEEETTTEEEEEEC
T ss_pred ECCCCC-EEEEcCCceEEEEEe
Confidence 666666 555577777777654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0013 Score=73.30 Aligned_cols=208 Identities=6% Similarity=-0.042 Sum_probs=133.6
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECCCC----ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
...+..++|++.+..|.... .+.|+.+++... .....+.........+++.+.+++++++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45688999999888887776 588999998752 223333334456788999984566666666678999999875
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeC--CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
......+........+|++.|.+.+|+.+.. .+.|...+++..... .... .+ . .....+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~--~~~~--~~-l---~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT--EN-I---QWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE--EEEC--SS-C---SCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE--EEEE--CC-C---CceEEEEEEeCCCEEEE
Confidence 4433333333445789999997666665543 367888888763321 1111 11 0 24588999988877776
Q ss_pred E--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 957 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 957 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+ ..+.|..+|+............+.-.....|++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 4 5678999998765433332221223456678873 34455566667889999988887766554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0095 Score=64.29 Aligned_cols=235 Identities=11% Similarity=0.053 Sum_probs=116.5
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.....+.+|.|.+++. ++++| .+|.| +...+.|+.-..... ........+.+|+|++ +..+
T Consensus 33 ~~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~ 93 (327)
T 2xbg_A 33 PTTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGW 93 (327)
T ss_dssp SCSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEE
T ss_pred CCCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEE
Confidence 3456799999988887 46654 45654 333333432111000 0112344789999986 4444
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce-EEEecCcccCeEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVYS 501 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~ 501 (1101)
+ ++.++.|.. ..+.|+..........+.+.+..+.+.+++. +++.+. ++.|..- ...|+. .....++...+..
T Consensus 94 ~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~S-~DgG~tW~~~~~~~~~~~~~ 167 (327)
T 2xbg_A 94 I-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYRT-KDSGKNWQALVQEAIGVMRN 167 (327)
T ss_dssp E-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEEE-SSTTSSEEEEECSCCCCEEE
T ss_pred E-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEEE-cCCCCCCEEeecCCCcceEE
Confidence 4 556674443 4444554432211112345678888877776 455544 5554322 123332 2223345566777
Q ss_pred EeeeecCCccEEEEEecCCcEE-EEecCCCCceeee-cCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 502 VCPHHKENIQFIFSTALDGKIK-AWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~-~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
+.+. +++.+++.+ .+|.+. -+|-. +..-..+ ......+. .+.+.+++. ++.+
T Consensus 168 ~~~~--~~~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~---------------------~~~~~~~g~-~~~~ 221 (327)
T 2xbg_A 168 LNRS--PSGEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLH---------------------NMGFTPDGR-LWMI 221 (327)
T ss_dssp EEEC--TTSCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEE---------------------EEEECTTSC-EEEE
T ss_pred EEEc--CCCcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccc---------------------eeEECCCCC-EEEE
Confidence 7764 445566555 445443 33320 1110111 11122233 344445444 4455
Q ss_pred eCCCcEEEEECCCCceeEEEcCC--CCCCCcCeEEEccCCCEEEEEeCCCcE
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGI 629 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i 629 (1101)
+.+|.+++++.+.++....+... .....+.++.+.+++..++++. +|.+
T Consensus 222 ~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 222 VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence 66777777653334433322211 1112467888888887777654 5655
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0036 Score=67.20 Aligned_cols=224 Identities=11% Similarity=0.032 Sum_probs=126.6
Q ss_pred CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE-EcCCeEEEEEccCC---ceee
Q 001318 368 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGG---DEVR 443 (1101)
Q Consensus 368 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~---~~~~ 443 (1101)
..|+..|+.+.+.... + .....+..++|+++++.|..+ ..++.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6789999887654321 1 223467899999976666555 45689999998861 2222
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC-CcE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKI 522 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-g~i 522 (1101)
. .+.........+++.+.++. ++++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222345688999876665 4566667889999997654433333333345677776432 33344443333 567
Q ss_pred EEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEcC
Q 001318 523 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 523 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
...+++.............. ...+++++++..|+.+. ..+.|..+|++..........
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~---------------------P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~ 204 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQW---------------------PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED 204 (316)
T ss_dssp EEEETTSCCEEEEECSSCSC---------------------EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred EEEcCCCCCeEEEEECCCCC---------------------ceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec
Confidence 77766532221111111222 33455555545555544 567899999874333222222
Q ss_pred CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 602 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 602 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.........+++. .+.++++-...+.|..++..++
T Consensus 205 ~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 205 EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 2222234567775 4556666666788988887766
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0027 Score=70.67 Aligned_cols=230 Identities=10% Similarity=0.063 Sum_probs=143.6
Q ss_pred CEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc----eEeeeecCcccCee
Q 001318 818 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----EVKSKLKGHSKRIT 893 (1101)
Q Consensus 818 ~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~----~~~~~l~~h~~~V~ 893 (1101)
.+|+.+....|+..++........+. ....+..++|++.+++++.+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 35666667889999998765444443 45678999999855555555556789999988652 12222332344577
Q ss_pred EEEEcCC-CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe---CCeEEEEEcCC
Q 001318 894 GLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTK 969 (1101)
Q Consensus 894 ~l~~s~d-g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---d~~v~vwd~~~ 969 (1101)
+|++.+. +.+.++-...+.|.+.++++.... ..+. ... .....++++|.+.+|..+. ...|...++..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~--~l~~-~~~-----~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--TLFR-ENG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEE--EEEE-CSS-----CCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceE--EEEe-CCC-----CCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 8999874 444555556778999998764321 1111 111 2458999999766666542 36788888875
Q ss_pred ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001318 970 LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1048 (1101)
Q Consensus 970 ~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~ 1048 (1101)
........ ..-.....|+++++++.|+.+. ..+.|..+|++.......+.... ..-.|.+++.. .+.
T Consensus 235 ~~~~~~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~--------~l~~P~gl~v~--~~~ 302 (400)
T 3p5b_L 235 VDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--------RLAHPFSLAVF--EDK 302 (400)
T ss_dssp CSCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS--------TTSSEEEEEEE--TTE
T ss_pred CccEEEEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC--------CCCCCEEEEEe--CCE
Confidence 44332222 2235789999999887776654 46789999987543332222101 11234567764 345
Q ss_pred EEEEEecCCcEEEEeccCCC
Q 001318 1049 EFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1049 ~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
++++-...+.|..++..+|+
T Consensus 303 lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 303 VFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEESSSCSEEEEESSSCC
T ss_pred EEEecCCCCeEEEEEcCCCC
Confidence 66777777889999977776
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00025 Score=85.28 Aligned_cols=243 Identities=12% Similarity=0.019 Sum_probs=139.5
Q ss_pred EEEEec-CCCEEEEEe-CC-----------eEEEEECCCCcee--eEecC-CCCCeEEEEEecCCCcEEEEEec-cCeEE
Q 001318 810 CFALSK-NDSYVMSAS-GG-----------KISLFNMMTFKTM--ATFMP-PPPAATFLAFHPQDNNIIAIGMD-DSSIQ 872 (1101)
Q Consensus 810 ~~~~s~-dg~~la~~s-dg-----------~i~vwd~~~~~~~--~~~~~-~~~~i~~l~~sp~d~~~lasg~~-dg~v~ 872 (1101)
++++.+ +++.++.|+ +. .+.+||..+++.. ..+.. +.....++++.. +++++++|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 567777 888888876 21 5889999876533 22322 333445677888 8999999984 55899
Q ss_pred EEEeecceEeeeecCcccCe-eEEEEcCCCCEEEEEe-CC-----CceEEEeCCCccccccee---eecCCCCCCCCCCC
Q 001318 873 IYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVLVSSG-AD-----SQLCVWSSDGWEKQKNRF---LQIPTGRTPTAQSD 942 (1101)
Q Consensus 873 vwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l~s~s-~D-----~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~v 942 (1101)
+||..+++-...-..+..+. .++++.+||++++.|| .+ ..+.+||..+.+-..... .......
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~------- 341 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD------- 341 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-------
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-------
Confidence 99988764332211122222 2455667999999998 44 568999998754211100 0011110
Q ss_pred eEEEEcCCCcEEEE----------EeCCeEEEEEcCCceeeeeccCCC-------CCCCeeEEEEc-CCCCEEEEEEcCC
Q 001318 943 TRVQFHQDQIHFLV----------VHETQLAIFETTKLECVKQWVPRE-------SSAPITHATFS-CDSQLVYACFLDA 1004 (1101)
Q Consensus 943 ~~~~~s~dg~~la~----------~~d~~v~vwd~~~~~~~~~~~~~~-------h~~~i~~l~~s-pdg~~l~s~s~dg 1004 (1101)
....+..+++.++. .....+..||..+........... ....-.++.|. .++++++.|+.++
T Consensus 342 ~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~ 421 (656)
T 1k3i_A 342 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 421 (656)
T ss_dssp TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence 00112233333333 234567889988776443221110 01122344443 4788888888543
Q ss_pred -----------eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC-----------CcEEEE
Q 001318 1005 -----------TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----------GGVHVF 1062 (1101)
Q Consensus 1005 -----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d-----------g~v~vW 1062 (1101)
.|.+||..+....... ...++..... .+....| ++++++.|+.+ ..+.+|
T Consensus 422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R~~-----~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 422 YQDSDATTNAHIITLGEPGTSPNTVFA--SNGLYFARTF-----HTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp SSSSBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCCBS-----CEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred CCCCCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCccc-----CCeEECC-CCCEEEECCcccCcCcCCCCcccceEEE
Confidence 6888888877654332 0123322111 1445556 67899999865 468999
Q ss_pred eccCCC
Q 001318 1063 EPLESE 1068 (1101)
Q Consensus 1063 ~~~~~~ 1068 (1101)
|+.+.+
T Consensus 494 dp~t~~ 499 (656)
T 1k3i_A 494 VPEQDT 499 (656)
T ss_dssp EGGGTE
T ss_pred cCCCCc
Confidence 997755
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0022 Score=71.04 Aligned_cols=216 Identities=10% Similarity=-0.030 Sum_probs=129.0
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
.........+..++|++.+..|+.+-...+.|..++........ ++.........+++.+.
T Consensus 109 ~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~~ 169 (386)
T 3v65_B 109 TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDWV 169 (386)
T ss_dssp EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------EECSSCSCCCCEEEETT
T ss_pred EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------EEeCCCCCccEEEEEeC
Confidence 33444556789999999877777777778899999988764322 11222235578999986
Q ss_pred CCeEE-EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC-CcEEEEeCCCCceEEEecCcc
Q 001318 419 GSLFG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 419 g~~la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
+..|. +-...+.|.+.+++...... .+.........+++.|.+.. ++++-... +.|...++.............
T Consensus 170 ~g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~~ 245 (386)
T 3v65_B 170 HDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTHL 245 (386)
T ss_dssp TTEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred CCeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCcEEEEECCC
Confidence 55554 44556789888887643222 12233456789999998775 34444444 788888865443333333334
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
...+.+++++.. +.+.++-+..+.|..+|++.......+.........+ ++ ..+..+
T Consensus 246 ~~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gi---------------------av-~~~~ly 302 (386)
T 3v65_B 246 FWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI---------------------TV-FEDSLY 302 (386)
T ss_dssp SCEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEE---------------------EE-ETTEEE
T ss_pred CCeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEE---------------------EE-ECCEEE
Confidence 456788885433 2445555556788888876533222222222222233 33 122344
Q ss_pred EEEeCCCcEEEEECCCCceeEEEc
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSID 600 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1101)
++-...+.|..++..+++.+..+.
T Consensus 303 ~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EeeCCCCeEEEEECCCCcceEEEc
Confidence 455566778888866676665554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0012 Score=69.86 Aligned_cols=196 Identities=9% Similarity=0.144 Sum_probs=125.7
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCC----c---EEEEEec---cCeEEEEEee--cceEee
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN----N---IIAIGMD---DSSIQIYNVR--VDEVKS 883 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~----~---~lasg~~---dg~v~vwd~~--~~~~~~ 883 (1101)
..+++... .+.+.+||+ +++.++.+.. +.++.+..-| +- + ++++... +++|.+|++. ++. +.
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 34444333 688999999 8898888863 5677777666 32 2 2333333 5799999884 333 43
Q ss_pred eecC------cc-cCeeEEEE--cCC-CC-EEEEEeCCCceEEEeCCC---cccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 884 KLKG------HS-KRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDG---WEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 884 ~l~~------h~-~~V~~l~~--s~d-g~-~l~s~s~D~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
.+.. .. ..+..+|+ ++. ++ ++++...+|.+..|++.. +... .+.+..+.-. +.+..++..+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~-~~lVR~f~lg----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS-GKKVRAFKMN----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE-EEEEEEEECS----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc-ceEEEEecCC----CCcceEEEcC
Confidence 3321 11 55777888 664 44 678888899999999843 2221 2222222211 3678899999
Q ss_pred CCcEEEEE-eCCeEEEEEcC-----CceeeeeccCCCCCCCeeEEEE--cCCCC-EEEEEE-cCCeEEEEEcC-Cceeee
Q 001318 950 DQIHFLVV-HETQLAIFETT-----KLECVKQWVPRESSAPITHATF--SCDSQ-LVYACF-LDATVCVFSAA-NLKLRC 1018 (1101)
Q Consensus 950 dg~~la~~-~d~~v~vwd~~-----~~~~~~~~~~~~h~~~i~~l~~--spdg~-~l~s~s-~dg~v~vwd~~-~~~~~~ 1018 (1101)
....|.++ .+..|..|+.+ +++.+..+....-...+..|++ .++++ +|++++ .+.+..|||.. +.+.+.
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 88888886 55567777754 3455554432222347888888 56666 676666 57799999996 788888
Q ss_pred ecCC
Q 001318 1019 RINP 1022 (1101)
Q Consensus 1019 ~~~~ 1022 (1101)
.|..
T Consensus 270 ~f~I 273 (355)
T 3amr_A 270 DFRI 273 (355)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8763
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0021 Score=72.27 Aligned_cols=255 Identities=11% Similarity=0.082 Sum_probs=138.4
Q ss_pred CCcEEEEEec-CCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 346 SSPMSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 346 ~~v~~~~~sp-dg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
.....++|+| ++..|+++-. .+.|+.+|..+++... +.........++|+++|++|.+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence 4678999998 4554455444 3889999988765432 1223456889999999997766
Q ss_pred EEcC----C-eEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCeEEEEEecCCCcEEEEeCCCCceEEEec-Cccc
Q 001318 425 AYSR----H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEA 497 (1101)
Q Consensus 425 ~~~d----~-~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~ 497 (1101)
+... . .+.+.+.. +.... ...+. .......++++| ++. ++++-..++.|..++..++....... +...
T Consensus 196 ad~~~~~~~~~v~~~~~~-g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTRE-SGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EECCSCTTSEEEEEEEGG-GTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EeCCCCcccceEEEEeCC-Cceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 6542 2 34444433 32221 01122 123467789999 555 66676677899999988765422222 1223
Q ss_pred CeEEEeeeecCCcc-EEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEcc--CCce--E-EeccccCceeEEEEc-
Q 001318 498 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA--DGTR--T-YQGFRKRSLGVVQFD- 570 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~--~-~~~~~~~~~~~~~~~- 570 (1101)
....++|+ ++++ ++++-...+.|..++.+....... .+..++-.+ .|.. . ....-..+...+++.
T Consensus 271 ~P~gia~~--pdG~~lyv~d~~~~~I~~~~~d~~~~~~~------~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~ 342 (430)
T 3tc9_A 271 WEFHIQFH--PSGNYAYIVVVNQHYILRSDYDWKTKRLT------TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKN 342 (430)
T ss_dssp CCEEEEEC--TTSSEEEEEETTTTEEEEEEEETTTTEEC------CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEEC
T ss_pred cceeEEEc--CCCCEEEEEECCCCEEEEEeCCccccccc------ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcc
Confidence 45668874 5556 445555678898887764211110 000111000 0000 0 000001111134442
Q ss_pred -------CCCCEEEEEeCCCcEEEEECCCCceeEEEcC---------CC------CCCCcCeEEEcc-CCCEEEEEeCCC
Q 001318 571 -------TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA---------DG------GLPASPRIRFNK-DGCLLAVSTNDN 627 (1101)
Q Consensus 571 -------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~------~~~~v~~~~~s~-~~~~l~~~~~dg 627 (1101)
++++++++=...+.|+.++. +|........ .+ .......+++++ ++.++++-..++
T Consensus 343 ~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 421 (430)
T 3tc9_A 343 PAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENR 421 (430)
T ss_dssp GGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred ccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCC
Confidence 33555555556677888883 4543333321 00 122456899999 466666666677
Q ss_pred cEEEEEec
Q 001318 628 GIKILATS 635 (1101)
Q Consensus 628 ~i~iw~~~ 635 (1101)
.|+.++++
T Consensus 422 rIr~i~~e 429 (430)
T 3tc9_A 422 RIRKIGYE 429 (430)
T ss_dssp EEEEEEEC
T ss_pred eEEEEccC
Confidence 88887753
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0031 Score=70.87 Aligned_cols=253 Identities=8% Similarity=-0.005 Sum_probs=147.6
Q ss_pred CeeEEEEec-CCCEEEEEe--CCeEEEEECCCCceeeEecCC---CCCeEEEEE-------ecCCCcEEEEEeccC----
Q 001318 807 AVPCFALSK-NDSYVMSAS--GGKISLFNMMTFKTMATFMPP---PPAATFLAF-------HPQDNNIIAIGMDDS---- 869 (1101)
Q Consensus 807 ~i~~~~~s~-dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------sp~d~~~lasg~~dg---- 869 (1101)
....|+|+| +...|.++. .+.|++.|.+++......... ......++| ++ ++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 477899998 455555555 367999999876655444322 235889999 99 777555555443
Q ss_pred ---eEEEEEeec-ceEe-----eeecCcccCeeEEEEcCC-CCEEEEEeCCCceEEEeCC-------Cccc------c--
Q 001318 870 ---SIQIYNVRV-DEVK-----SKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSD-------GWEK------Q-- 924 (1101)
Q Consensus 870 ---~v~vwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-g~~l~s~s~D~~v~iwd~~-------~~~~------~-- 924 (1101)
.|.+++... +... ..+... .....++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366665443 2221 122111 23457889995 5555666677889999987 4432 0
Q ss_pred --cceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEc--CCcee-----e-eeccCCCC---------CC
Q 001318 925 --KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET--TKLEC-----V-KQWVPRES---------SA 983 (1101)
Q Consensus 925 --~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~--~~~~~-----~-~~~~~~~h---------~~ 983 (1101)
...+.....+ .....++|+|+|++|.++ ....|+.++. .++.. + ..+...++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0111222211 245899999999965553 5678888654 33321 1 11111111 12
Q ss_pred Cee-EEEEc-------CCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcc----------c-CCC---CCCCCccceEEE
Q 001318 984 PIT-HATFS-------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAY----------L-PAG---VSSSNVHPLVIA 1041 (1101)
Q Consensus 984 ~i~-~l~~s-------pdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~----------~-~~~---~~~~~v~~~~i~ 1041 (1101)
... .++.. ++|.++++=.....|+.++ .+|... ++.-... . ..| ....--.|..|+
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 344 45554 5677777777788999999 566443 3321100 0 011 001123477899
Q ss_pred EeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1042 AHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1042 ~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+.++++.++++-.....|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998547777777778899999987654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.002 Score=72.40 Aligned_cols=254 Identities=7% Similarity=-0.009 Sum_probs=141.4
Q ss_pred ceEEEEEcC-CCceEEeeec-CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE----
Q 001318 740 KISRLIFTN-SGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL---- 813 (1101)
Q Consensus 740 ~i~~l~~s~-~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~---- 813 (1101)
....++|+| +...|+.+.. .+.|++.|+ +++.+....-.+...-.....++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~----------------------~~~~v~~l~~~~~~~~~~p~~ia~~~~~ 197 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDL----------------------KNRMLSSPLNINTIPTNRIRSIAFNKKI 197 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEET----------------------TTTEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEEC----------------------CCCEEEEEEccCccccCCCcEEEEeecc
Confidence 467889998 3444555544 456666654 222222211111112335889999
Q ss_pred ---ecCCCEEEEEe-CC-------eEEEEECCC-Ccee-----eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 814 ---SKNDSYVMSAS-GG-------KISLFNMMT-FKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 814 ---s~dg~~la~~s-dg-------~i~vwd~~~-~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
+++|++|+++. .+ .|.+++... +... ..+. .......++++|+++.++++-..++.|+.+|+
T Consensus 198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 99999777776 32 266776443 2221 1222 11245678899966666666778889999999
Q ss_pred e-------cceE-----------eeee--cCcccCeeEEEEcCCCCEEEEE-eCCCceEEEeCCCcc--cccceeeecC-
Q 001318 877 R-------VDEV-----------KSKL--KGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWE--KQKNRFLQIP- 932 (1101)
Q Consensus 877 ~-------~~~~-----------~~~l--~~h~~~V~~l~~s~dg~~l~s~-s~D~~v~iwd~~~~~--~~~~~~~~~~- 932 (1101)
. ++.. ...+ .+....-..|+|+|+|++|..+ .....|+.++.+... ......+.-.
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~ 356 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY 356 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence 7 4443 1121 1122345789999999965544 456678886654321 1000111110
Q ss_pred --CCCC------CCCCCCe-EEEEc-------CCCcEEEE-EeCCeEEEEEcCCceeeeeccCC------------C---
Q 001318 933 --TGRT------PTAQSDT-RVQFH-------QDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------E--- 980 (1101)
Q Consensus 933 --~~~~------~~~~~v~-~~~~s-------~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~------------~--- 980 (1101)
.+.. ....... .++.. ++|.++++ ..+.+|+.++. ++.. .++... +
T Consensus 357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-~TiaG~g~~~~~~~~~~~G~~d 434 (496)
T 3kya_A 357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-STYAGRGASTSLADGNQWGTDD 434 (496)
T ss_dssp TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-EEEEESCTTHHHHHSCSCCCCC
T ss_pred CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE-EEEecccccccccCccccccCC
Confidence 1110 0012234 44554 56666666 47789999984 4533 233211 1
Q ss_pred -------CCCCeeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeee
Q 001318 981 -------SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRC 1018 (1101)
Q Consensus 981 -------h~~~i~~l~~spd-g~~l~s~s~dg~v~vwd~~~~~~~~ 1018 (1101)
.-.....|+++++ |.++++=+.+..|+.++++....+.
T Consensus 435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 1234778999997 7777766677889999987665543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0035 Score=70.48 Aligned_cols=254 Identities=13% Similarity=0.116 Sum_probs=137.8
Q ss_pred CCcEEEEEecC--CCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 346 SSPMSMDFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 346 ~~v~~~~~spd--g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
.....++|+|+ +..|+++ ...+.|+.+|..+++... +........+++|+++|++++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 45679999995 3334444 333899999998776543 222345689999999999444
Q ss_pred EEEcC---Ce-EEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCeEEEEEecCCCcEEEEeCCCCceEEEe-c-Ccc
Q 001318 424 VAYSR---HI-VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-E-GHE 496 (1101)
Q Consensus 424 s~~~d---~~-i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~h~ 496 (1101)
+.... .. +...+...+.... ..+. .......+++.+ ++. ++++-..++.|+.+|..++.....+ . +..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 43311 22 3333433322111 1111 234456789999 555 5666667788999998878763332 2 112
Q ss_pred cCeEEEeeeecCCcc-EEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEc--cCCce--EEeccccCceeEEEE--
Q 001318 497 APVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS--ADGTR--TYQGFRKRSLGVVQF-- 569 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s--~~~~~--~~~~~~~~~~~~~~~-- 569 (1101)
..-..++|+ +++. +.++-...+.|+.++.+....... .+..++-. ..|.. ......-.....+++
T Consensus 273 ~~~~~ia~d--pdG~~LYvad~~~~~I~~~~~d~~~~~~~------~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~ 344 (433)
T 4hw6_A 273 GSNFHIVWH--PTGDWAYIIYNGKHCIYRVDYNRETGKLA------VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK 344 (433)
T ss_dssp SSCEEEEEC--TTSSEEEEEETTTTEEEEEEBCTTTCCBC------CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred CCcccEEEe--CCCCEEEEEeCCCCEEEEEeCCCCCcccC------cEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence 223357774 5556 445555568898887763211100 00011100 00000 000000112334666
Q ss_pred -------cCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC----------------CCCcCeEEEc-cCCCEEEEEeC
Q 001318 570 -------DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------------LPASPRIRFN-KDGCLLAVSTN 625 (1101)
Q Consensus 570 -------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~~ 625 (1101)
.++++++++-...+.|+.++. +|.. .++.+... ......++++ ++|.++++-..
T Consensus 345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 345 NEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp CGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 556666666666778888885 5543 33322211 1234578898 56766666666
Q ss_pred CCcEEEEEec
Q 001318 626 DNGIKILATS 635 (1101)
Q Consensus 626 dg~i~iw~~~ 635 (1101)
++.|+.++++
T Consensus 423 n~rIr~i~~e 432 (433)
T 4hw6_A 423 NHRVRKIAPE 432 (433)
T ss_dssp GTEEEEEEEC
T ss_pred CCEEEEEecC
Confidence 7788887754
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.89 E-value=9.4e-05 Score=88.92 Aligned_cols=207 Identities=6% Similarity=-0.047 Sum_probs=127.1
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEECCC----CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
..+..++|++.+..|+.+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3467899999888888776 57899999875 22222222222345678888645666665556789999998754
Q ss_pred eEeeeecCcccCeeEEEEcCCCCEEEEEeC-C-CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
.....+.........|++.|++.+|+.+.. . +.|.+.++...... .+.. ... .....|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~l~~-~~l-----~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT-ENI-----QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--EESC-SSC-----SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--EEEe-CCC-----CCccEEEEeccCCEEEEE
Confidence 433333322344678999987665555443 2 67777777653211 1111 111 245789999987666553
Q ss_pred --eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 958 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 958 --~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
..+.|.++++........+...........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 567899999875433322221112234556677544 455566667899999999999887775
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0089 Score=72.15 Aligned_cols=207 Identities=7% Similarity=-0.040 Sum_probs=129.5
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECCCC----ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
...+.+++|++.+..|+... .+.|+.+++... .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 45578899999777777766 578999998752 223334334456788999984556666666778999999875
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeC-C-CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
......+........+|++.|.+.+|+.+.. . +.|.+.++++.... .++ .... .....|++++.+..|+.
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~--~lv---~~~l---~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLV---TENI---QWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--EEE---CSSC---SCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE--EEE---eCCC---CCceEEEEecCCCeEEE
Confidence 4333333333445789999998666665543 2 67888888764321 111 1111 24688999987777666
Q ss_pred E--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeec
Q 001318 957 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 957 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1020 (1101)
+ ....|..+++............+.-....+|++..+ +++++-...+.|...|..+|+.+..+
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 4 566899999876544333322122334567777433 44445556678888888787665544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0044 Score=66.40 Aligned_cols=204 Identities=7% Similarity=-0.031 Sum_probs=129.8
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEECCCCceee-EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 807 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
.+.+++|++.+..|.... .+.|..++........ .+.........+++.+.+++++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 366889998777777776 5889999987653222 2222234567899997456666666667899999986432222
Q ss_pred eecCcccCeeEEEEcCCCCEEEEEeC--CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eC
Q 001318 884 KLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 959 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~dg~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d 959 (1101)
.+........++++.|.+..|..+.. .+.|...+++..... .... .+. .....+++++++..|..+ ..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~~--~~l----~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF--IIIN--SEI----YWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE--EEEC--SSC----SCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE--EEEE--CCC----CCccEEEEeccCCEEEEEECCC
Confidence 22233445689999987666665553 467777777653211 1111 111 244789999977766664 56
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.|..+|+..... ..+. .+.......+++.. +.++++-...+.|..++..+|+....+.
T Consensus 188 ~~I~~~d~dG~~~-~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 188 NFIHKSNLDGTNR-QAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTSCSC-EEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEcCCCCce-EEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 7899999875332 2222 12245677888853 3455565567889999998887766554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.70 E-value=0.009 Score=63.93 Aligned_cols=210 Identities=10% Similarity=-0.011 Sum_probs=122.4
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE-E
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-G 423 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-a 423 (1101)
...+.+++|++.+..|+.+-...+.|..++..++..... ++...-.....+++.+.+..| +
T Consensus 34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~ 95 (318)
T 3sov_A 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYW 95 (318)
T ss_dssp EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEE
T ss_pred CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEE
Confidence 346778999997776777777788999999876532110 111122356789999855554 4
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEe-cCCCcEEEEeCCCCceEEEe-cCcccCeEE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIF-EGHEAPVYS 501 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~ 501 (1101)
+-...+.|.+++.+...... .+.........+++.|.+.. ++++- +..+.|...++.. .....+ ...-..-+.
T Consensus 96 ~d~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 96 TDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNG 170 (318)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEE
T ss_pred EECCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccE
Confidence 44567889999988643221 12234456789999987765 33343 3457888888653 333333 223344577
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
+++++. ++.+.++-+..+.|..+|++.................+ ++. .+..+.+-..
T Consensus 171 lavd~~-~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gl---------------------av~-~~~lywtd~~ 227 (318)
T 3sov_A 171 LTLDYE-EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFAL---------------------TLF-EDILYWTDWS 227 (318)
T ss_dssp EEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEE---------------------EEE-TTEEEEEETT
T ss_pred EEEecc-CCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEE---------------------EEe-CCEEEEEecC
Confidence 887543 33444555556788888887533222221112222222 232 1223444445
Q ss_pred CCcEEEEECCCCceeEEEc
Q 001318 582 DFSIKFWDMDSVQLLTSID 600 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~ 600 (1101)
.+.|..++..+++....+.
T Consensus 228 ~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 228 THSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTTCCSCEEEE
T ss_pred CCeEEEEECCCCCceEEEe
Confidence 6778888887776655554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0065 Score=64.17 Aligned_cols=189 Identities=12% Similarity=0.127 Sum_probs=117.9
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCC----CC---EEE-EEeC--CCceEEEeCCCcccccceee
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LN---VLV-SSGA--DSQLCVWSSDGWEKQKNRFL 929 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d----g~---~l~-s~s~--D~~v~iwd~~~~~~~~~~~~ 929 (1101)
.+++.....+-+.+||+ +|+.++.+.. +.++.|..-|+ |+ +++ +.-. +++|++|+++..... +
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~----l 113 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT----L 113 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----E
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----e
Confidence 34555566789999999 8888888864 56777776653 22 223 3333 578999987532111 1
Q ss_pred ecCCCC--C--CCCCCCeEEEE--cCC-Cc-EEEE-EeCCeEEEEEc-------CCceeeeeccCCCCCCCeeEEEEcCC
Q 001318 930 QIPTGR--T--PTAQSDTRVQF--HQD-QI-HFLV-VHETQLAIFET-------TKLECVKQWVPRESSAPITHATFSCD 993 (1101)
Q Consensus 930 ~~~~~~--~--~~~~~v~~~~~--s~d-g~-~la~-~~d~~v~vwd~-------~~~~~~~~~~~~~h~~~i~~l~~spd 993 (1101)
...... . .....+..+|+ +|. ++ ++++ ..++.+..|++ .+.+.++.+.. ...+-.+.+.+.
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~ 190 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDE 190 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCC
Confidence 111110 0 00135667777 774 54 4444 57899999988 34567777765 457889999998
Q ss_pred CCEEEEEEcCCeEEEEEcC-----CceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-cCCcEEEEecc
Q 001318 994 SQLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1065 (1101)
Q Consensus 994 g~~l~s~s~dg~v~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~-~dg~v~vW~~~ 1065 (1101)
...|+.+-+|.-|..++.+ +++.+..+. .++-...+.-+++-..+ +++ +|++.+ .++++.|||..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~------~g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD------GRHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS------SSSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEec------CCccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence 9999999999777777755 455665543 12122225534444344 344 565555 67899999996
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.013 Score=61.30 Aligned_cols=205 Identities=11% Similarity=0.078 Sum_probs=125.1
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeE-ecC----CC--CCeEEEEE---ecCCCcEEEEEec-----
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT-FMP----PP--PAATFLAF---HPQDNNIIAIGMD----- 867 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~-~~~----~~--~~i~~l~~---sp~d~~~lasg~~----- 867 (1101)
.....+++|.+....+..++ .++|..||...+..... +.+ .. ..+..|.| .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 34456789988666676666 79999999976544333 222 11 13578999 68 6888886542
Q ss_pred --------cCeEEEEEee---cceEeeeec--Ccc-----------cCeeEEEEcCCCCEEEEEeCC-CceEEEeCCCcc
Q 001318 868 --------DSSIQIYNVR---VDEVKSKLK--GHS-----------KRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWE 922 (1101)
Q Consensus 868 --------dg~v~vwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~dg~~l~s~s~D-~~v~iwd~~~~~ 922 (1101)
+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+...
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6789999998 776654432 111 247899999999999998877 776666655431
Q ss_pred cccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCcee--eeeccCCC--CCCCeeEE-EEcCCCCE
Q 001318 923 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC--VKQWVPRE--SSAPITHA-TFSCDSQL 996 (1101)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~--~~~~~~~~--h~~~i~~l-~~spdg~~ 996 (1101)
. ....+...... .......++++|+|+.|++. ..+.+..+|+.+... +..-.... .-.....| ..-.+|+.
T Consensus 171 ~-~~~~~~~~~~~--~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 171 V-STFAWESGNGG--QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp E-EEEEECCCCSS--SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred E-eeeeecCCCcc--cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence 1 11111111111 11346799999999988883 588999999885332 21110000 11123333 33347777
Q ss_pred -EEEEEcCCeEEEEEcCC
Q 001318 997 -VYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 997 -l~s~s~dg~v~vwd~~~ 1013 (1101)
|++....+.+.+.+.+.
T Consensus 248 llV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEETTEEEEEECSST
T ss_pred EEEEcCCCCEEEEECCCC
Confidence 55555566666655443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.015 Score=63.24 Aligned_cols=230 Identities=13% Similarity=0.102 Sum_probs=119.1
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCce--eeEec---CCCCCeEEEEEecCC----CcEEEEEecc-----CeEE
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFM---PPPPAATFLAFHPQD----NNIIAIGMDD-----SSIQ 872 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~sp~d----~~~lasg~~d-----g~v~ 872 (1101)
....++|.|||+++++-.+|.|++++ +++. +..+. ........++|+| + +.+.++-... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 47899999999966665589999998 3332 22221 1245688999999 6 4444443332 6788
Q ss_pred EEEeecc-----e-Eeeeec---CcccCeeEEEEcCCCCEEEEEeCC-------------CceEEEeCCCcccccc----
Q 001318 873 IYNVRVD-----E-VKSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKN---- 926 (1101)
Q Consensus 873 vwd~~~~-----~-~~~~l~---~h~~~V~~l~~s~dg~~l~s~s~D-------------~~v~iwd~~~~~~~~~---- 926 (1101)
.|+...+ + .+..+. +.......++|.|||.+.++.+.. +.|.-++.+. .....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 8887643 1 222233 111123689999999877775432 3344444432 10000
Q ss_pred -----eeeecCCCCCCCCCCCeEEEEcC-CCcEEEE-EeCCeE------EEEEcCCcee------------------eee
Q 001318 927 -----RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHETQL------AIFETTKLEC------------------VKQ 975 (1101)
Q Consensus 927 -----~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~-~~d~~v------~vwd~~~~~~------------------~~~ 975 (1101)
.......++ .....++|+| +|.++++ ...+.+ .+.-+..+.. +..
T Consensus 188 ~~~~~~~~i~a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 188 GRRGARPEVYSLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TCTTSCTTEEEECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred CCCCCCccEEEEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 000001111 1246789999 6776666 222221 2322222220 111
Q ss_pred ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeee-ecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001318 976 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC-RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 976 ~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
+ .+......++| .+|.++++....+.|...+++...... ......++.. .-.+..+++.| ||.+.++..
T Consensus 264 ~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 264 W---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp C---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEEC
T ss_pred c---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEEe
Confidence 1 11234667888 477777666666778877776443100 0000011110 12456889988 666666553
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.06 Score=58.49 Aligned_cols=228 Identities=12% Similarity=0.116 Sum_probs=124.6
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEECCCCc-eeeEec---CCCCCeEEEEEecC---CCcEEEEEec---c----CeE
Q 001318 806 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATFM---PPPPAATFLAFHPQ---DNNIIAIGMD---D----SSI 871 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---d~~~lasg~~---d----g~v 871 (1101)
.....++|.|||+++++-.+|.|++++. +++ .+..+. ........|+|+|+ ++.++++-.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3478999999998666655899999973 444 222221 12356889999993 2544444332 3 577
Q ss_pred EEEEeecc-------eE-eeeec---CcccCeeEEEEcCCCCEEEEEeCC-------------CceEEEeCCCcccc---
Q 001318 872 QIYNVRVD-------EV-KSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQ--- 924 (1101)
Q Consensus 872 ~vwd~~~~-------~~-~~~l~---~h~~~V~~l~~s~dg~~l~s~s~D-------------~~v~iwd~~~~~~~--- 924 (1101)
..|+.... +. +..+. .|. ...|+|.|||.+.++.+.. +.|.-++.+..-..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 77776543 11 12122 232 3679999999887775532 23443443321000
Q ss_pred --cceeeecCCCCCCCCCCCeEEEEcC-CCcEEEEE--eCC--eEEEEEcCCce------------------eeeeccCC
Q 001318 925 --KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HET--QLAIFETTKLE------------------CVKQWVPR 979 (1101)
Q Consensus 925 --~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~--~d~--~v~vwd~~~~~------------------~~~~~~~~ 979 (1101)
..... ..++ .....++|+| +|.++++- .+. .|.+. ..+. .+..+. .
T Consensus 186 f~~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~ 256 (354)
T 3a9g_A 186 FPNSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTG-S 256 (354)
T ss_dssp STTCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT-T
T ss_pred CCCCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecC-C
Confidence 00011 1122 1357899999 67766662 222 23332 2221 111110 1
Q ss_pred CCCCCeeEEEEc-------CCCCEEEEEEcCCeEEEEEcCCc-eeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001318 980 ESSAPITHATFS-------CDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1051 (1101)
Q Consensus 980 ~h~~~i~~l~~s-------pdg~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~ 1051 (1101)
. ...+..++|. .+|.++++....+.|...++... +...... ++. + ..-.+..+++.| ||.+.+
T Consensus 257 ~-~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~-~---~~~rp~~v~~~p-DG~lyv 327 (354)
T 3a9g_A 257 E-TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFK-N---VFGRLRDVVIDD-DGGILI 327 (354)
T ss_dssp C-CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECT-T---TSCCEEEEEECT-TSCEEE
T ss_pred C-CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---ecc-C---CCCCeeEEEECC-CCcEEE
Confidence 1 3467888884 57777777767778888888753 3321111 111 1 113456899998 677666
Q ss_pred EEe
Q 001318 1052 LGL 1054 (1101)
Q Consensus 1052 s~~ 1054 (1101)
+..
T Consensus 328 ~~~ 330 (354)
T 3a9g_A 328 STS 330 (354)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.037 Score=66.78 Aligned_cols=208 Identities=11% Similarity=0.017 Sum_probs=115.4
Q ss_pred CCCCeEEEEEecCCCeEEE-EEcCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC
Q 001318 406 PGVSVNRVIWSPDGSLFGV-AYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 483 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las-~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 483 (1101)
....+..|+|.+.+..|.. -...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 3457889999996555554 455688999998753210 011123334456788999988876 5667777889999997
Q ss_pred CCCceEEEecCcccCeEEEeeeecCCccEEEEEecC-CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccC
Q 001318 484 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 562 (1101)
Q Consensus 484 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 562 (1101)
........+.........|++.+. .+.++++-... +.|...+++.......+.......
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P------------------- 560 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP------------------- 560 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE-------------------
T ss_pred CCCeEEEEEeCCCCCcceEEEecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc-------------------
Confidence 755443333334445777887543 23344443222 667777765433222222222233
Q ss_pred ceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 563 SLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..+++++.+..|+.+. ..+.|...++........+...........|++.. ++++++-...+.|...+..++
T Consensus 561 --~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 561 --NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp --EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred --eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 3455554444555553 45678888886554444443322222334555532 234444445677887877666
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.054 Score=58.86 Aligned_cols=241 Identities=11% Similarity=0.087 Sum_probs=126.9
Q ss_pred CeeEEEEecCCC-EEEEEeCCeEEEEECCCCcee---eEe----cCCCCCeEEEEEecC---CCcEEEEEec-------c
Q 001318 807 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTM---ATF----MPPPPAATFLAFHPQ---DNNIIAIGMD-------D 868 (1101)
Q Consensus 807 ~i~~~~~s~dg~-~la~~sdg~i~vwd~~~~~~~---~~~----~~~~~~i~~l~~sp~---d~~~lasg~~-------d 868 (1101)
....|+|.|+|+ ++++-..|.|++++.. +... ..+ .........++|+|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 468999999999 6655558999999853 3221 111 112345789999993 3444444332 2
Q ss_pred CeEEEEEeecc-------eE-eeeec-----CcccCeeEEEEcCCCCEEEEEeCC-------------CceEEEeCCCcc
Q 001318 869 SSIQIYNVRVD-------EV-KSKLK-----GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWE 922 (1101)
Q Consensus 869 g~v~vwd~~~~-------~~-~~~l~-----~h~~~V~~l~~s~dg~~l~s~s~D-------------~~v~iwd~~~~~ 922 (1101)
..|..|++..+ +. +..+. .|. -..|+|.|||.+.++.+.. +.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 11 11221 132 3579999999777765442 345555544310
Q ss_pred cc----------cceeeecCCCCCCCCCCCeEEEEcC-CCcEEEEE--eCCeEEEEEcCCceeee---------------
Q 001318 923 KQ----------KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HETQLAIFETTKLECVK--------------- 974 (1101)
Q Consensus 923 ~~----------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~--~d~~v~vwd~~~~~~~~--------------- 974 (1101)
.. ..... ..++ .....++|+| +|++.++- .++.=.|.-+..+....
T Consensus 176 p~~npf~~~~~~~~~i~--a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIW--SYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEE--EECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEE--EEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 00000 1121 1357899999 67666662 22222333222221100
Q ss_pred ---------eccCC----CCCCCeeEEEEcC-------CCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCC
Q 001318 975 ---------QWVPR----ESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1034 (1101)
Q Consensus 975 ---------~~~~~----~h~~~i~~l~~sp-------dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1101)
.+... .+...+..++|.. +|.++++....+.|...+++.++...... ++. + ..
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-~---~~ 322 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-D---RG 322 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-G---GC
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-C---CC
Confidence 00000 1123567788864 57777777777888888887765443322 111 0 11
Q ss_pred ccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1035 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1035 v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
..+..+++.| ||.+.++.. ++.=+||++.
T Consensus 323 ~rp~~v~~~p-dG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp CCEEEEEECT-TSCEEEEEC-STTEEEEEEE
T ss_pred CceeEEEECC-CCcEEEEEe-CCCCEEEEEe
Confidence 2466899999 677655433 2223566653
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.24 Score=53.29 Aligned_cols=248 Identities=8% Similarity=0.079 Sum_probs=152.8
Q ss_pred EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCC
Q 001318 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 429 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 429 (1101)
+.-.+|..+ ++|.=. ..++.|+|+++.+.+....+ ...|..=.|-.+.. |+-.+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~~-l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNT-VALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETTE-EEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCCe-EEEEc-CC
Confidence 455678777 455444 57999999999988875332 22455555554443 33332 46
Q ss_pred eEEEEEccCCceeeeeeeeccc----cCCeeEEEEcCCCCeEEEEEec------CCCcEEEEeCCCCceEEEecCcccCe
Q 001318 430 IVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 430 ~i~iwd~~~~~~~~~~~~l~~h----~~~V~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
.|.-|+++......+. +..| ...|..-..+++.+. ++++|= -.|.+.+|..+.+ .-+.++||.+..
T Consensus 126 aVyHWsi~~~s~P~kv--FdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQPVKM--FDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCCCEEE--EECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eeEEecccCCCCchhh--eecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 7999999864433332 3333 235777777889986 333332 3467889986554 456788887766
Q ss_pred EEEeeeecCCc-cEEEEEecC---CcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCC
Q 001318 500 YSVCPHHKENI-QFIFSTALD---GKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 574 (1101)
Q Consensus 500 ~~v~~~~~~~~-~~l~s~~~d---g~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1101)
..+.+...... .++..+... +.+++-++... ... ..-......+-|.|+.. ..-...+.+++.-.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~~-------~DFPvamqvs~kyg 271 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 271 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTST-------TCCEEEEEEETTTT
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCccceeeeeeCCcccc-------cCceeEEEecccCC
Confidence 55543222211 233333332 67888887543 111 11122244445555433 22344567777778
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 575 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.++....-|.|++||++++.++..-+.... .|...+......-++.....|.|.-..+...
T Consensus 272 viyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 272 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 889999999999999999999988775544 4544555555556666668888887777665
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0025 Score=76.50 Aligned_cols=204 Identities=11% Similarity=0.036 Sum_probs=108.8
Q ss_pred CCeEEEEEecCCCeEEEEE-cCCeEEEEEccCC---ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC
Q 001318 408 VSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 483 (1101)
Q Consensus 408 ~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~---~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 483 (1101)
..+..|+|++++..|..+. ..+.|+.+++.+. ..... .+.........|++.+.++. ++++-...+.|.+.++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEec
Confidence 4567899999777776654 4578999998751 11111 12112234567888866554 4556566788999997
Q ss_pred CCCceEEEecCcccCeEEEeeeecCCccEEEEEecC-CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccC
Q 001318 484 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 562 (1101)
Q Consensus 484 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 562 (1101)
........+.........+++.+. .+.++++-... +.|..++++................
T Consensus 483 dg~~~~~l~~~~~~~P~giavDp~-~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn------------------ 543 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN------------------ 543 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECCSS-SSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC------------------
T ss_pred CCCceEEEEeCCCCCcceEEEccC-CCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc------------------
Confidence 655443333322233455666432 22333333222 5666665543222111111112223
Q ss_pred ceeEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 563 SLGVVQFDTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.+++++++..|+ +-...+.|..+++........+...........+++..+ .++++....+.|..++..++
T Consensus 544 ---Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 544 ---GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp ---CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred ---EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 355555433344 444567899999865433333322122223455676554 44555556788999988777
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.34 Score=52.44 Aligned_cols=108 Identities=18% Similarity=0.096 Sum_probs=62.3
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC---CCe
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSL 421 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~ 421 (1101)
-...+.++|.|||+ |++ +..+|.|.+++ .+++ .....+. +..........|+|+|| +.+
T Consensus 28 l~~P~~ia~~pdG~-l~V-~e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLV-TERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEE-EETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEE-EeCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence 45678999999998 344 46669999997 3443 1100110 11222356889999998 555
Q ss_pred EEEEEc----C----CeEEEEEccCC--ce--eeee-eeec-cccCCeeEEEEcCCCCeEEEEEe
Q 001318 422 FGVAYS----R----HIVQIYSYHGG--DE--VRQH-LEID-AHVGGVNDIAFSHPNKQLCVITC 472 (1101)
Q Consensus 422 las~~~----d----~~i~iwd~~~~--~~--~~~~-~~l~-~h~~~V~~~~~s~d~~~~~l~s~ 472 (1101)
|.++.. + ..|..|+...+ .. .+.+ ..+. +.......|+|.|||. ++++.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~ 152 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITT 152 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEE
Confidence 555433 3 56778887654 11 1111 1121 1112346799999997 45543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.34 Score=52.19 Aligned_cols=267 Identities=8% Similarity=0.071 Sum_probs=157.2
Q ss_pred CCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCcccc
Q 001318 709 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 788 (1101)
Q Consensus 709 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~ 788 (1101)
.+..+.+-|+.+.....+ ..-...+...+|..+.++.- ....+.|+|+...
T Consensus 46 ~~~~vvIiDl~~~~~~~r----------rpi~AdsAIMnP~~~iiALr-ag~~lQiFnle~K------------------ 96 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIR----------RPISADSAIMNPASKVIALK-AGKTLQIFNIEMK------------------ 96 (494)
T ss_dssp TCCEEEEEETTSTTSCEE----------EECCCSEEEECSSSSCEEEE-ETTEEEEEETTTT------------------
T ss_pred CCCeEEEEECCCCCccee----------cccccceeeeCCCCcEEEEe-cCCeEEEEchHHh------------------
Confidence 334788888876443311 12233456677877755544 4778888887432
Q ss_pred CCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCC-CceeeEecCC----CCCeEEEEEecCCCcEEE
Q 001318 789 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPP----PPAATFLAFHPQDNNIIA 863 (1101)
Q Consensus 789 ~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~-~~~~~~~~~~----~~~i~~l~~sp~d~~~la 863 (1101)
..+.... ....|.-=.|- +.+.|+..++..|+-|++.. ....+.|..| ...|..-..++ +.++++
T Consensus 97 ----~klks~~----~~e~VvfWkWi-s~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~ 166 (494)
T 1bpo_A 97 ----SKMKAHT----MTDDVTFWKWI-SLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLL 166 (494)
T ss_dssp ----EEEEEEE----CSSCCCEEEEE-ETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEE
T ss_pred ----hhhccee----cCCCceEEEec-CCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEE
Confidence 1111000 12233333332 23467777788999999974 3455556544 34677778888 777777
Q ss_pred EEe-------ccCeEEEEEeecceEeeeecCcccCeeEEEEcCC---CCEEEEEeCC---CceEEEeCCCc----ccccc
Q 001318 864 IGM-------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA---LNVLVSSGAD---SQLCVWSSDGW----EKQKN 926 (1101)
Q Consensus 864 sg~-------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d---g~~l~s~s~D---~~v~iwd~~~~----~~~~~ 926 (1101)
..+ -.|.+.+|+.+. +.-+.++||.+.-..+.+..+ ...++.+... +++.|-++... .....
T Consensus 167 l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k 245 (494)
T 1bpo_A 167 LTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 245 (494)
T ss_dssp EEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC
T ss_pred EEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc
Confidence 544 347889999775 445778888765554444321 1244444432 68999998543 11111
Q ss_pred eeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe
Q 001318 927 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT 1005 (1101)
Q Consensus 927 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~ 1005 (1101)
+...++-.+....+-..++..|+.-..+.. ..-|.+++||+.++.++..-.. ....|...+......=++.....|.
T Consensus 246 k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI--s~~~iF~t~~~~~~~Gi~~Vnr~Gq 323 (494)
T 1bpo_A 246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQ 323 (494)
T ss_dssp EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEETTTTEEEEEETTCE
T ss_pred eeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc--cCCceEEecccCCCCcEEEEccCce
Confidence 122222222222234567777776665555 7899999999999999876543 2456666665555445555667887
Q ss_pred EEEEEcCCceee
Q 001318 1006 VCVFSAANLKLR 1017 (1101)
Q Consensus 1006 v~vwd~~~~~~~ 1017 (1101)
|.--.++...++
T Consensus 324 Vl~v~v~e~~iv 335 (494)
T 1bpo_A 324 VLSVCVEEENII 335 (494)
T ss_dssp EEEEEECTTTHH
T ss_pred EEEEEEccccch
Confidence 777776665543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0097 Score=62.29 Aligned_cols=164 Identities=11% Similarity=0.051 Sum_probs=105.2
Q ss_pred eEEEEcCC-CCEEEEEeCCCceEEEeCCCcccccceeeecCCCC---CCCCCCCeEEEE---cCCCcEEEEEe-------
Q 001318 893 TGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR---TPTAQSDTRVQF---HQDQIHFLVVH------- 958 (1101)
Q Consensus 893 ~~l~~s~d-g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~---s~dg~~la~~~------- 958 (1101)
-++.|.+. +.++++.-..++|..|+...+.... . ...+. ......+..+.+ .|+|+++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~---~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN---V-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE---E-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE---E-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 46788764 5555555578999999997543221 1 12211 011123578999 68988888643
Q ss_pred -------CCeEEEEEcC---CceeeeeccCCCC-----------CCCeeEEEEcCCCCEEEEEEcC-CeEEEEEcCCcee
Q 001318 959 -------ETQLAIFETT---KLECVKQWVPRES-----------SAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKL 1016 (1101)
Q Consensus 959 -------d~~v~vwd~~---~~~~~~~~~~~~h-----------~~~i~~l~~spdg~~l~s~s~d-g~v~vwd~~~~~~ 1016 (1101)
+..|..||+. +++.+......+. ......+++.++|+..++++.- +.|...+.+...
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT- 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence 5789999999 7776644432111 1348899999999999999888 887777765442
Q ss_pred eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1017 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+..+-.. .+.... ..-+..|+++| |+++|++...+|.|..+|+.+
T Consensus 171 ~~~~~~~--~~~~~~--~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWE--SGNGGQ--RPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEEC--CCCSSS--CCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred Eeeeeec--CCCccc--ccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 2221100 111111 12234899999 678877777799999999873
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.06 Score=57.30 Aligned_cols=224 Identities=11% Similarity=0.055 Sum_probs=118.9
Q ss_pred EEEEEe---CCeEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEecc----CeEEEEEeecce--EeeeecC
Q 001318 819 YVMSAS---GGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDE--VKSKLKG 887 (1101)
Q Consensus 819 ~la~~s---dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~--~~~~l~~ 887 (1101)
+++.|+ ...+.+||..+.+-... +........++. - ++++++.|+.+ ..+.+||..+.+ .+..+..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 444554 25799999987553322 221111222222 3 67788888765 578899987754 3333322
Q ss_pred cccCeeEEEEcCCCCEEEEEeCC------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e--
Q 001318 888 HSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-- 958 (1101)
Q Consensus 888 h~~~V~~l~~s~dg~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-- 958 (1101)
....-..+.+ ++++++.||.+ ..+.+||..+.+-.... ...... .-.+++. -+++.++.+ .
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r-----~~~~~~~-~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP--SMLTQR-----CSHGMVE-ANGLIYVCGGSLG 160 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC--CCSSCC-----BSCEEEE-ETTEEEEECCEES
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC--CCcCCc-----ceeEEEE-ECCEEEEECCCCC
Confidence 1111222222 67788888865 45888998875422111 111111 1122222 366666653 2
Q ss_pred -------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeeeecCCCccc
Q 001318 959 -------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYL 1026 (1101)
Q Consensus 959 -------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~ 1026 (1101)
-..+.+||+.+.+-...-.... ...-.+++. -++++++.|+.+ ..+.+||..+.+-...- .+
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~ 234 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS----PM 234 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECC----CC
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC----CC
Confidence 3458899998876543322111 111122222 267777777654 35899999887654321 12
Q ss_pred CCCCCCCCccceEEEEeCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001318 1027 PAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1068 (1101)
Q Consensus 1027 ~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d-----g~v~vW~~~~~~ 1068 (1101)
+...... +++.. ++.+++.|+.+ ..+.++|+.+.+
T Consensus 235 p~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 235 PWKGVTV-----KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp SCCBSCC-----EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCccce-----eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 2221111 23333 46788888865 468888887765
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.13 Score=55.92 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=63.8
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC---CC
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 420 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 420 (1101)
.-...+.++|.|||+ ++++ ..+|.|.+++ +++......+. +..........|+|+|| +.
T Consensus 29 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 29 GLEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEP 90 (352)
T ss_dssp CCSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCC
Confidence 345678999999998 3444 5669999998 44321110000 12222457889999998 56
Q ss_pred eEEEEEc-C-----CeEEEEEccCCcee--eeee-eec---cccCCeeEEEEcCCCCeEEEEEe
Q 001318 421 LFGVAYS-R-----HIVQIYSYHGGDEV--RQHL-EID---AHVGGVNDIAFSHPNKQLCVITC 472 (1101)
Q Consensus 421 ~las~~~-d-----~~i~iwd~~~~~~~--~~~~-~l~---~h~~~V~~~~~s~d~~~~~l~s~ 472 (1101)
+|.++.. + +.|..|+...+... +... .+. +.......++|.|||. ++++.
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 6655443 2 67888887754211 1111 122 1112346899999996 44543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.058 Score=57.26 Aligned_cols=219 Identities=9% Similarity=0.052 Sum_probs=114.4
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc-----CeEEEEEeecce-----EeeeecCcccCeeEE
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE-----VKSKLKGHSKRITGL 895 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~-----~~~~l~~h~~~V~~l 895 (1101)
..+.+||..+.+-...-..........+... ++++++.|+.+ ..+.+||..+.+ .+..+......-..+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 3588999887543221111111111222223 67788888765 368899987644 333332222222222
Q ss_pred EEcCCCCEEEEEeCCC-----ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC-----CeEEE
Q 001318 896 AFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----TQLAI 964 (1101)
Q Consensus 896 ~~s~dg~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d-----~~v~v 964 (1101)
.+ +++.++.||.++ .+.+||+.+.+-.... ...... .-..++. -+++.++.+ .+ ..+.+
T Consensus 110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r-----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG--DMQTAR-----EGAGLVV-ASGVIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE--ECSSCC-----BSCEEEE-ETTEEEEECCBCSSCBCCCEEE
T ss_pred EE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECC--CCCCCc-----ccceEEE-ECCEEEEECCCCCCcccceEEE
Confidence 22 677778877543 4788888775422211 111111 1122222 266666663 32 46899
Q ss_pred EEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceE
Q 001318 965 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1039 (1101)
Q Consensus 965 wd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1039 (1101)
||+.+.+-...-.... ...-.+++ .-++++++.|+.+ ..|.+||+.+.+....-. ++...... +
T Consensus 180 ~d~~~~~W~~~~~~p~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~r~~~-----~ 248 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMAT-KRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTPRCYV-----G 248 (301)
T ss_dssp EETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSCCBSC-----E
T ss_pred EeCCCCcEEeCCCCCc-ccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCcccce-----e
Confidence 9998876544322111 11111222 2267777878764 468999999887653321 22221111 2
Q ss_pred EEEeCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001318 1040 IAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1068 (1101)
Q Consensus 1040 i~~~~~d~~~l~s~~~d-----g~v~vW~~~~~~ 1068 (1101)
+... ++++++.|+.+ ..+.++|+.+.+
T Consensus 249 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 249 ATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 2232 46788888776 357788887654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.098 Score=55.49 Aligned_cols=220 Identities=13% Similarity=0.111 Sum_probs=114.7
Q ss_pred CeEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEeccC-----eEEEEEeecce--EeeeecCcccCeeEEE
Q 001318 826 GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE--VKSKLKGHSKRITGLA 896 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~--~~~~l~~h~~~V~~l~ 896 (1101)
..+..||..+.+-... +......- +++ .- ++++++.|+.++ .+.+||..+.+ .+..+......-..+.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRA-GMV-YM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSC-EEE-EE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccc-eEE-EE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence 4588999887543222 11111111 222 22 677888887553 58889987654 2332222111122222
Q ss_pred EcCCCCEEEEEeCCC-----ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e-------CCeEE
Q 001318 897 FSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-------ETQLA 963 (1101)
Q Consensus 897 ~s~dg~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-------d~~v~ 963 (1101)
+ +++.++.||.++ .+.+||+.+.+-..... ..... .-.+++. -+++.++.+ . -..+.
T Consensus 107 ~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r-----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 107 L--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP--MNTRR-----SSVGVGV-VGGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp E--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC--CSSCC-----BSCEEEE-ETTEEEEECCEETTTTEECCCEE
T ss_pred E--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC--CCCcc-----cCceEEE-ECCEEEEEeCCCCCCCccccEEE
Confidence 2 677888887654 47788887654221111 11111 1122222 256666653 2 24588
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC-----eEEEEEcCCceeeeecCCCcccCCCCCCCCccce
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1038 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1038 (1101)
+||+.+.+-...-.... ...-.+++ .-++++++.|+.++ .+.+||..+++....-. ++......
T Consensus 177 ~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~~~~r~~~----- 245 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMST-RRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD----MNMCRRNA----- 245 (302)
T ss_dssp EEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC----CSSCCBSC-----
T ss_pred EEeCCCCcEEECCCCcc-ccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC----CCCccccC-----
Confidence 99998876544322111 11111222 22678888887653 68999998876553221 22211111
Q ss_pred EEEEeCCCCCEEEEEecCC-----cEEEEeccCCCccccC
Q 001318 1039 VIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1073 (1101)
Q Consensus 1039 ~i~~~~~d~~~l~s~~~dg-----~v~vW~~~~~~~~~~~ 1073 (1101)
+++.. ++++++.|+.++ .+.++|+.+.+ |..
T Consensus 246 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 246 GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 23332 467888888764 48889888755 544
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.052 Score=58.48 Aligned_cols=109 Identities=11% Similarity=0.076 Sum_probs=81.5
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCC----CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE----
Q 001318 810 CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---- 881 (1101)
Q Consensus 810 ~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~---- 881 (1101)
......+|.-++++.++.||.-++......+.++.. -..|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 345678889999999999999998855555555433 23688999999 999999886 45888888873210
Q ss_pred --------eeeecC------cccCeeEEEEcCC---CCEEEEEeCCCceEEEeCCC
Q 001318 882 --------KSKLKG------HSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 882 --------~~~l~~------h~~~V~~l~~s~d---g~~l~s~s~D~~v~iwd~~~ 920 (1101)
...+.- ...+|..+.|+|- +..|++-..|++|++||+..
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 111111 2567999999985 56899999999999999986
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.4 Score=53.87 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=63.1
Q ss_pred CCeeEEEEecCCCEEEEEeC-CeEEEEECCCCcee--eEecC------CCCCeEEEEEecC---CCcEEEEEec------
Q 001318 806 EAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--ATFMP------PPPAATFLAFHPQ---DNNIIAIGMD------ 867 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sd-g~i~vwd~~~~~~~--~~~~~------~~~~i~~l~~sp~---d~~~lasg~~------ 867 (1101)
.....++|.|+|+++++-.. +.|++++..++... ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999998887765 47998887655432 22321 2456779999994 3444443332
Q ss_pred ------cCeEEEEEeecc-------eEe-eeecC-cccCeeEEEEcCCCCEEEEEeC
Q 001318 868 ------DSSIQIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGA 909 (1101)
Q Consensus 868 ------dg~v~vwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~dg~~l~s~s~ 909 (1101)
...|.-|++..+ +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665421 111 11221 1123688999999998887664
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.096 Score=55.49 Aligned_cols=188 Identities=9% Similarity=0.040 Sum_probs=99.6
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCCc---eeeE--ecCCCCCeEEEEEecCCCcEEEEEeccC-----eEEEEEeec
Q 001318 815 KNDSYVMSAS-G-----GKISLFNMMTFK---TMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRV 878 (1101)
Q Consensus 815 ~dg~~la~~s-d-----g~i~vwd~~~~~---~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~ 878 (1101)
.+++.++.|+ + ..+.+||..+.+ -... +........+ +. . ++++++.|+.++ .+.+||..+
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~-~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA-TT-L-GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE-EE-E-TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE-EE-E-CCEEEEEcccCCCcccceEEEEcCCC
Confidence 4566666665 3 359999988765 2222 2211111222 22 2 677888887543 688899876
Q ss_pred ce--EeeeecCcccCeeEEEEcCCCCEEEEEeCC-----CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 879 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 879 ~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
.+ .+..+......-..+.+ ++++++.||.+ ..+.+||+.+.+-.... ...... .-..++ .-++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r-----~~~~~~-~~~~ 207 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT--PMATKR-----SGAGVA-LLND 207 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC--CCSSCC-----BSCEEE-EETT
T ss_pred CeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCC--CCCccc-----ccceEE-EECC
Confidence 43 33333221111122222 67788888765 35888998775422111 111111 111222 2256
Q ss_pred cEEEEE-e-----CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceee
Q 001318 952 IHFLVV-H-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1017 (1101)
Q Consensus 952 ~~la~~-~-----d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~ 1017 (1101)
+.++.+ . ...+.+||+.+.+-...-...........+. -++++++.|+.+ ..|.+||..+.+..
T Consensus 208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 666663 3 2479999998876544322111111112222 277787878765 35888998877654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.2 Score=53.21 Aligned_cols=228 Identities=12% Similarity=0.063 Sum_probs=119.0
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEec----c-----CeEEEEEeec
Q 001318 815 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMD----D-----SSIQIYNVRV 878 (1101)
Q Consensus 815 ~dg~~la~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~----d-----g~v~vwd~~~ 878 (1101)
-++..++.|+ + ..+.+||..+.+-... +....... +++. - ++++++.|+. + ..+.+||..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 4556666665 2 4689999887553322 11111111 2222 2 6778888776 2 3688889876
Q ss_pred ce--EeeeecCcccCeeEEEEcCCCCEEEEEeCC-----CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 879 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 879 ~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
.+ .+..+......-..+.+ ++++++.||.+ ..+.+||..+.+-..... ..... ..-..+.+ ++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r----~~~~~~~~--~~ 169 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP--MLTRR----IGVGVAVL--NR 169 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC--CSSCC----BSCEEEEE--TT
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC--CCccc----cceEEEEE--CC
Confidence 54 22222221112222233 67777777754 358888887754221111 11111 11122222 56
Q ss_pred cEEEEE-eC-----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeeeec
Q 001318 952 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 952 ~~la~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~~~~ 1020 (1101)
+.++.+ .+ ..+.+||+.+.+-...-........-..+.+ ++++++.|+.+ ..+.+||+.+.+....-
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 666663 32 4689999988765433221111111122222 77787878765 45999999887655321
Q ss_pred CCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001318 1021 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1068 (1101)
Q Consensus 1021 ~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d-----g~v~vW~~~~~~ 1068 (1101)
. ++...... +++.. ++++++.|+.+ ..+.++|+.+.+
T Consensus 248 ~----~p~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 248 P----MKHRRSAL-----GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp C----CSSCCBSC-----EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred C----CCCCccce-----EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1 22221111 23333 46788888765 357788887755
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.66 Score=49.47 Aligned_cols=234 Identities=13% Similarity=0.092 Sum_probs=122.5
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCcee--eEe----cCCCCCeEEEEEecC---CCcEEEEEe--ccCeEE
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF----MPPPPAATFLAFHPQ---DNNIIAIGM--DDSSIQ 872 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~--~~~----~~~~~~i~~l~~sp~---d~~~lasg~--~dg~v~ 872 (1101)
-.....++|.|||+++++-. .|.|++++..+++.. ..+ .........|+|+|+ ++.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34578999999999888887 799999987655432 212 122456789999993 244443322 345566
Q ss_pred EEEeecc----------eE-eeeec---CcccCeeEEEEcCCCCEEEEEeCC-------------CceEEEeCCCccccc
Q 001318 873 IYNVRVD----------EV-KSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQK 925 (1101)
Q Consensus 873 vwd~~~~----------~~-~~~l~---~h~~~V~~l~~s~dg~~l~s~s~D-------------~~v~iwd~~~~~~~~ 925 (1101)
-|.+..+ +. +..+. .|. -..|+|.|||.+.++.+.. +.|.-.+.+..-...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 6655431 11 11221 243 3579999999888886532 333333333210000
Q ss_pred c---eeeecCCCCCCCCCCCeEEEEcCCCcEEEE--EeCCeEEEEEcCCceee------------------eeccCCCCC
Q 001318 926 N---RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECV------------------KQWVPRESS 982 (1101)
Q Consensus 926 ~---~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~d~~v~vwd~~~~~~~------------------~~~~~~~h~ 982 (1101)
. .......|+. ....++|+|+|.+.++ +.++.-.|.-+..+... ..|. .+.
T Consensus 189 nPf~~~~i~a~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~--~~~ 262 (347)
T 3das_A 189 NPFPGSPVYSYGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS--TDE 262 (347)
T ss_dssp CSSTTCCEEEBCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC--TTT
T ss_pred CCCCCCeEEeeCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC--CCC
Confidence 0 0001111221 3578999999887777 34443333333333211 1110 111
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001318 983 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 983 ~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
.....++|. +|.+++..-..+.|....+..+..+.. ...++. + ..-++..|+..| ||.++++.+
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~--~e~~l~-~---~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAAD--PQAFLE-G---EYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSC--CEEEST-T---TSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecc--eEEeec-C---CCCCccEEEECC-CCcEEEEEc
Confidence 355677776 466666555556666666655432211 011111 1 112344788877 566555443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.33 Score=51.68 Aligned_cols=220 Identities=11% Similarity=0.114 Sum_probs=114.5
Q ss_pred CCeEEEEECCCCceee-EecCCCCCeEEEEEecCCCcEEEEEec----c-------CeEEEEEeecceE--eeeecCccc
Q 001318 825 GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD----D-------SSIQIYNVRVDEV--KSKLKGHSK 890 (1101)
Q Consensus 825 dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~----d-------g~v~vwd~~~~~~--~~~l~~h~~ 890 (1101)
...+..||..+.+-.. .+..........+... ++++++.|+. + ..+.+||..+.+- +..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3679999998866432 2222223333334444 7788888874 1 1377888876542 222221111
Q ss_pred CeeEEEEcCCCCEEEEEeCC--------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e-C-
Q 001318 891 RITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E- 959 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-d- 959 (1101)
.-..+.+ +++.++.||.+ ..+.+||..+.+-.... ...... .-.+++ .-+++.++.+ . +
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r-----~~~~~~-~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD--PLPYVV-----YGHTVL-SHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC--CCSSCC-----BSCEEE-EETTEEEEECCBCTT
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC--CCCCcc-----cceeEE-EECCEEEEEeCCCCC
Confidence 1122222 66777777743 35888898875421111 111111 112222 2456666664 3 2
Q ss_pred ----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC-----eEEEEEcCCceeeeecCCCcccCCCC
Q 001318 960 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAGV 1030 (1101)
Q Consensus 960 ----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
..+.+||..+.+-...-.... ...-.+++ .-++++++.|+.++ .+.+||..+.+-...-. ++...
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r 234 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQER 234 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCC
T ss_pred CcccceEEEEeCCCCeEEECCCCCC-chhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCcc
Confidence 469999998876543322111 11111222 22778888887654 58899998876554321 22221
Q ss_pred CCCCccceEEEEeCCCCCEEEEEecCC--------------cEEEEeccCCC
Q 001318 1031 SSSNVHPLVIAAHPQEPNEFALGLSDG--------------GVHVFEPLESE 1068 (1101)
Q Consensus 1031 ~~~~v~~~~i~~~~~d~~~l~s~~~dg--------------~v~vW~~~~~~ 1068 (1101)
... +++.. ++++++.|+.++ .+.++|+.+.+
T Consensus 235 ~~~-----~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 235 SSL-----SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp BSC-----EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred cce-----eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 111 23333 457888887643 36677777654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.27 Score=52.69 Aligned_cols=190 Identities=13% Similarity=0.078 Sum_probs=107.3
Q ss_pred CCeEEEEEecCCCcEEEEE------------eccCeEEEEEeec--ceEe-eeecC-----cccCeeEEEEcC--CCC-E
Q 001318 847 PAATFLAFHPQDNNIIAIG------------MDDSSIQIYNVRV--DEVK-SKLKG-----HSKRITGLAFSH--ALN-V 903 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg------------~~dg~v~vwd~~~--~~~~-~~l~~-----h~~~V~~l~~s~--dg~-~ 903 (1101)
...-.+++.| +|..++++ ..+|.|.++|..+ .+.. -.+.+ .......+.+.+ +|. +
T Consensus 50 ~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3455666777 66555443 2689999999873 2211 11222 233566777755 453 3
Q ss_pred EEEE-eC--CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe----C--------------CeE
Q 001318 904 LVSS-GA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----E--------------TQL 962 (1101)
Q Consensus 904 l~s~-s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----d--------------~~v 962 (1101)
|+.+ .. +.+|.+|+++..... ...+....+.. ......+++.++|.+.++.. | +.|
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~--~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKL--LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTE-EEEEEEECCTT--CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCE-EEEEeccccCC--CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 4443 22 567888888764322 22333333332 24678999999999887742 1 344
Q ss_pred EEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcC-Cceeee--ecCCCcccCCCCCCCCccce
Q 001318 963 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAA-NLKLRC--RINPSAYLPAGVSSSNVHPL 1038 (1101)
Q Consensus 963 ~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~-~~~~~~--~~~~~~~~~~~~~~~~v~~~ 1038 (1101)
.-+|. ++..... ..-...+.++||||++.|+.+. ..+.|..|++. ++++.. .+. .+ -.|=
T Consensus 206 yr~d~--~~~~~~~---~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~----~~-------g~PD 269 (355)
T 3sre_A 206 TYYSP--NDVRVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS----FD-------TLVD 269 (355)
T ss_dssp EEECT--TCCEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE----CS-------SEEE
T ss_pred EEEEC--CeEEEee---cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe----CC-------CCCc
Confidence 44554 3222111 1134678999999998876655 56789999986 343322 221 11 1222
Q ss_pred EEEEeCCCCCEEEEEecC
Q 001318 1039 VIAAHPQEPNEFALGLSD 1056 (1101)
Q Consensus 1039 ~i~~~~~d~~~l~s~~~d 1056 (1101)
.++..+++|++.+++..+
T Consensus 270 Gi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 270 NISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEECTTTCCEEEEEESC
T ss_pred eEEEeCCCCcEEEEecCC
Confidence 577776347777766544
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.16 Score=53.82 Aligned_cols=190 Identities=11% Similarity=0.107 Sum_probs=100.9
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc------CeEEEEEeecce--E
Q 001318 815 KNDSYVMSAS-G----GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE--V 881 (1101)
Q Consensus 815 ~dg~~la~~s-d----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd~~~~~--~ 881 (1101)
-+++.++.|+ + ..+.+||..+.+-...-..........+..- ++++++.|+.+ ..+.+||..+.+ .
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 3666666665 3 5689999987654332221112111122223 67788888765 468899987754 2
Q ss_pred eeeecCcccCeeEEEEcCCCCEEEEEeC---------CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCc
Q 001318 882 KSKLKGHSKRITGLAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 952 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~---------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 952 (1101)
+..+......-..+. -++++++.||. -..+.+||+.+.+-.... ...... .-..++.. +++
T Consensus 133 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r-----~~~~~~~~-~~~ 202 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC--PMIEAR-----KNHGLVFV-KDK 202 (306)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC--CCSSCC-----BSCEEEEE-TTE
T ss_pred CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC--Cccchh-----hcceEEEE-CCE
Confidence 222221111112222 26777777764 244788998875422111 111111 11222222 666
Q ss_pred EEEEE-eC-----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceee
Q 001318 953 HFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1017 (1101)
Q Consensus 953 ~la~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~ 1017 (1101)
.++.+ .+ ..+.+||+.+.+-...-..........++.+ ++++++.|+.+ ..+.+||..+.+-.
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 66663 22 4689999988765433221111112223333 77888888754 46899999887654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.044 Score=59.04 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=79.5
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEe-------eeeeeeecCCCCcccccccccCCCCCeEEEEEec-
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-------RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 417 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 417 (1101)
+.|..+..||+|++|.+.| +..|.|-.+..+..... ...+.|.++. .......+|..+-|+|
T Consensus 66 ~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl 135 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPK 135 (452)
T ss_dssp CTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTT
T ss_pred CceeEEEECCCCCEEEEec--CCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEeccc
Confidence 3789999999999644443 36899988874432211 0112222211 0112467899999999
Q ss_pred --CCCeEEEEEcCCeEEEEEccCCceeee-------eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 418 --DGSLFGVAYSRHIVQIYSYHGGDEVRQ-------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 418 --dg~~las~~~d~~i~iwd~~~~~~~~~-------~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.|..|++-..|++|++||+........ .+.+..+...|.+++|..++-.+++++....|.|+-.
T Consensus 136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 567899999999999999986321111 0112223356888888887766666666666666443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.39 Score=52.17 Aligned_cols=231 Identities=14% Similarity=0.098 Sum_probs=110.3
Q ss_pred CCCEEEEEe--CCeEEEEECCC--Cc--eeeEec-CCCCCeEEEEEecCCCcEEEEEec-c---------CeEEEEEeec
Q 001318 816 NDSYVMSAS--GGKISLFNMMT--FK--TMATFM-PPPPAATFLAFHPQDNNIIAIGMD-D---------SSIQIYNVRV 878 (1101)
Q Consensus 816 dg~~la~~s--dg~i~vwd~~~--~~--~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~-d---------g~v~vwd~~~ 878 (1101)
++++++.|+ ...+.+||..+ .+ .+..+. ...... +++. - ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAF-I-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEE-E-TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEE-E-CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 667777776 46799999864 22 222222 111112 2222 2 6778888876 2 4688999877
Q ss_pred ce--EeeeecCcccCeeEEEEcCCCCEEEEEeCC---------------------------------------CceEEEe
Q 001318 879 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD---------------------------------------SQLCVWS 917 (1101)
Q Consensus 879 ~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D---------------------------------------~~v~iwd 917 (1101)
.+ .+..+. ........+...++++++.||.+ ..+.+||
T Consensus 96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 54 222222 01111111222577888888865 4688888
Q ss_pred CCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e------CCeEEEEEc--CCceeeeeccCCCCCCCeeEE
Q 001318 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H------ETQLAIFET--TKLECVKQWVPRESSAPITHA 988 (1101)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~------d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~l 988 (1101)
..+.+-.... ...... ..-.+++. -+++.++.+ . ...+.+||+ .+.+-...-..........+.
T Consensus 175 ~~~~~W~~~~--~~p~~~----~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 175 PSTQQWSYAG--ESPWYG----TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp TTTTEEEEEE--ECSSCC----CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred CCCCcEEECC--CCCCCC----cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 8775422211 111110 01022222 255555553 2 235777876 444433221111111111222
Q ss_pred EEcCCCCEEEEEEcC----------------------CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 989 TFSCDSQLVYACFLD----------------------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 989 ~~spdg~~l~s~s~d----------------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
+...++++++.|+.+ ..+.+||+.+.+....- .++...... ++... +
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~r~~~-----~~~~~--~ 316 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG----ELSQGRAYG-----VSLPW--N 316 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE----ECSSCCBSS-----EEEEE--T
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC----CCCCCcccc-----eeEEe--C
Confidence 233467777777632 25788999877544321 122221111 22222 4
Q ss_pred CCEEEEEecCC------cEEEEeccCCC
Q 001318 1047 PNEFALGLSDG------GVHVFEPLESE 1068 (1101)
Q Consensus 1047 ~~~l~s~~~dg------~v~vW~~~~~~ 1068 (1101)
+++++.|+.++ .|.+.++.+++
T Consensus 317 ~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 317 NSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp TEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 68888898764 34555776655
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.87 Score=49.22 Aligned_cols=113 Identities=13% Similarity=0.216 Sum_probs=60.5
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC---CCeE
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSLF 422 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l 422 (1101)
...+.|+|.|+|++|+ ++...|.|++++.. ++... .+. ++ . .+..........|+|+|| +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~-V~e~~G~i~~~~~~-g~~~~--~~~--~~-------~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGML-ITLRGGELRHWQAG-KGLSA--PLS--GV-------P-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEE-EEETTTEEEEEETT-TEECC--CCB--SC-------C-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEE-EEeCCceEEEEeCC-Cceee--Eec--CC-------c-ccccCCCCCceeEEECCCCCCCCEE
Confidence 4678999999998534 44567999999853 32110 000 00 0 012223456789999996 5555
Q ss_pred EEEE-c-------CCeEEEEEccCCc----eeeeee-eec---cccCCeeEEEEcCCCCeEEEEEec
Q 001318 423 GVAY-S-------RHIVQIYSYHGGD----EVRQHL-EID---AHVGGVNDIAFSHPNKQLCVITCG 473 (1101)
Q Consensus 423 as~~-~-------d~~i~iwd~~~~~----~~~~~~-~l~---~h~~~V~~~~~s~d~~~~~l~s~~ 473 (1101)
..+. . ...|..|++..+. ..+.+. .+. .....-..|+|.|||. +++.+|.
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd 149 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGE 149 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECC
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECC
Confidence 5443 2 2356667665431 111111 111 1111246799999995 3444433
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.35 Score=51.89 Aligned_cols=186 Identities=12% Similarity=0.054 Sum_probs=94.2
Q ss_pred CeEEEEEecCCCeEEEEE------------cCCeEEEEEccCCc-eeeeeeeecc-----ccCCeeEEEEcC--CCCeEE
Q 001318 409 SVNRVIWSPDGSLFGVAY------------SRHIVQIYSYHGGD-EVRQHLEIDA-----HVGGVNDIAFSH--PNKQLC 468 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~~-~~~~~~~l~~-----h~~~V~~~~~s~--d~~~~~ 468 (1101)
..-.++..|+|..+++++ .+|.|.++|.++.. ..... .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 445667788876655542 68999999998431 12222 2332 234567777765 454213
Q ss_pred EEEecC--CCcEEEEeCCCCce----EEEecCc-ccCeEEEeeeecCCccEEEEEec---C--------------CcEEE
Q 001318 469 VITCGD--DKTIKVWDATNGAK----QYIFEGH-EAPVYSVCPHHKENIQFIFSTAL---D--------------GKIKA 524 (1101)
Q Consensus 469 l~s~~~--d~~i~iwd~~~~~~----~~~~~~h-~~~v~~v~~~~~~~~~~l~s~~~---d--------------g~i~~ 524 (1101)
++.-.. +.+|.+|++..+.. +.++.+. -...+.+.+. ++|.+.++... | |.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333222 56788888765422 2334332 2345666653 45555555431 1 22222
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cce--eEEEc
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS-VQL--LTSID 600 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~ 600 (1101)
+|. .+ . ..+ ...-...+.++|+||++.++.+. ..+.|+.|++.. ++. ...+.
T Consensus 208 ~d~--~~-~--------------------~~~-~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~ 263 (355)
T 3sre_A 208 YSP--ND-V--------------------RVV-AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS 263 (355)
T ss_dssp ECT--TC-C--------------------EEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred EEC--Ce-E--------------------EEe-ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe
Confidence 221 11 0 100 01112344567777776666654 578899999863 332 12232
Q ss_pred CCCCCCCcCeEEEcc-CCCEEEEEe
Q 001318 601 ADGGLPASPRIRFNK-DGCLLAVST 624 (1101)
Q Consensus 601 ~~~~~~~v~~~~~s~-~~~~l~~~~ 624 (1101)
. ....-.+++.+ +|++.+++.
T Consensus 264 ~---~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 264 F---DTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp C---SSEEEEEEECTTTCCEEEEEE
T ss_pred C---CCCCceEEEeCCCCcEEEEec
Confidence 1 12244577777 477666554
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.43 Score=50.77 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=99.2
Q ss_pred EEecCCCEEEEEe-----C-------CeEEEEECCCCceeeEecCCC-CCe-EEEEEecCCCcEEEEEecc--------C
Q 001318 812 ALSKNDSYVMSAS-----G-------GKISLFNMMTFKTMATFMPPP-PAA-TFLAFHPQDNNIIAIGMDD--------S 869 (1101)
Q Consensus 812 ~~s~dg~~la~~s-----d-------g~i~vwd~~~~~~~~~~~~~~-~~i-~~l~~sp~d~~~lasg~~d--------g 869 (1101)
+...+++.++.|+ + ..+.+||..+.+-. .+.... ... .+++.. ++++++.|+.+ .
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccc
Confidence 3445777777665 1 12788898875432 221111 111 122222 67788888743 3
Q ss_pred eEEEEEeecce--EeeeecCcccCeeEEEEcCCCCEEEEEeC-C-----CceEEEeCCCcccccceeeecCCCCCCCCCC
Q 001318 870 SIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGA-D-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 941 (1101)
Q Consensus 870 ~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1101)
.+.+||..+.+ .+..+......-..+. -++++++.||. + ..+.+||..+.+-..... .... ..
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~-----r~ 188 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP--MQTA-----RS 188 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC--CSSC-----CB
T ss_pred eEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC--CCCc-----hh
Confidence 68899987753 3332222111112222 36777788876 2 358889988754221111 1111 11
Q ss_pred CeEEEEcCCCcEEEE-EeCC-----eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC-----------
Q 001318 942 DTRVQFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------- 1004 (1101)
Q Consensus 942 v~~~~~s~dg~~la~-~~d~-----~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg----------- 1004 (1101)
-..++ .-+++.++. +.++ .+.+||+.+.+-...-.... ...-.+++ .-++++++.|+.++
T Consensus 189 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~ 265 (315)
T 4asc_A 189 LFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ-ERSSLSLV-SLVGTLYAIGGFATLETESGELVPT 265 (315)
T ss_dssp SCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEE
T ss_pred ceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC-cccceeEE-EECCEEEEECCccccCcCCcccccc
Confidence 12222 226666666 4332 68899998876544322111 11111222 22677777777642
Q ss_pred ---eEEEEEcCCceeeee
Q 001318 1005 ---TVCVFSAANLKLRCR 1019 (1101)
Q Consensus 1005 ---~v~vwd~~~~~~~~~ 1019 (1101)
.|.+||+.+.+-...
T Consensus 266 ~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 266 ELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEEEETTTTEEEEE
T ss_pred ccCcEEEecCCCChhhhh
Confidence 378899888765543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.39 Score=59.86 Aligned_cols=236 Identities=13% Similarity=0.127 Sum_probs=142.2
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeeecC
Q 001318 809 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKG 887 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~ 887 (1101)
-+.-++|..+.+|.-...++.|||+++...++.+.- ...|.-=.|-. .+.|+..+ +..|+-|++... .+...+..
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR 144 (1630)
T 1xi4_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (1630)
T ss_pred hhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence 345677888888877788899999998777766553 33566666764 44555554 568999999642 34444544
Q ss_pred c----ccCeeEEEEcCCCCEEEEEeC-------CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEE--cCCCcEE
Q 001318 888 H----SKRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF--HQDQIHF 954 (1101)
Q Consensus 888 h----~~~V~~l~~s~dg~~l~s~s~-------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~dg~~l 954 (1101)
| ...|..-..+++.++++..|- .|.+.+|.++.+. -+...||... -..+.+ .+....|
T Consensus 145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~~---F~~~~~~~~~~~~~l 215 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAAS---FAQFKMEGNAEESTL 215 (1630)
T ss_pred chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHhh---hheeccCCCCCCceE
Confidence 4 345777778889999885542 4778899887643 2334444321 111111 1111223
Q ss_pred EE-Ee----CCeEEEEEcCCc---e------eeeec-cCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeee
Q 001318 955 LV-VH----ETQLAIFETTKL---E------CVKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 955 a~-~~----d~~v~vwd~~~~---~------~~~~~-~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~ 1019 (1101)
.+ +. .+.++|.++... . .+..+ .++.-.+-..++..|+.-..+...+.-|.|.+||+.||..+.+
T Consensus 216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 22 22 267888887442 1 11111 1112244456788888888888889999999999999998865
Q ss_pred cCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1020 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1020 ~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
-+. . +..|+ ..+.....+ =++.....|.|.--.+....
T Consensus 296 ~ri----s----~~~iF--~~~~~~~~~-g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 296 NRI----S----GETIF--VTAPHEATA-GIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred ccc----c----CCceE--EeccCCCCC-ceEEEcCCceEEEEEEccch
Confidence 441 1 11133 222222122 24444577877777776655
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.93 E-value=1.6 Score=48.56 Aligned_cols=195 Identities=13% Similarity=0.148 Sum_probs=112.6
Q ss_pred cCCCEEEEEe--CCeEEEEECCCCceeeEecC-CCCCeEEEEEe--cCCCcEEEEEec-------cCeE---------EE
Q 001318 815 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFH--PQDNNIIAIGMD-------DSSI---------QI 873 (1101)
Q Consensus 815 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s--p~d~~~lasg~~-------dg~v---------~v 873 (1101)
.||+||.... +..|...++...++-+.+.- ....+-.++|- | +..|++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 5889999988 57788899988887666543 34557777776 5 6667776653 3321 11
Q ss_pred EE---eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC---------------ceEEEeCCC-------cccccce-
Q 001318 874 YN---VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDG-------WEKQKNR- 927 (1101)
Q Consensus 874 wd---~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~---------------~v~iwd~~~-------~~~~~~~- 927 (1101)
|. ..+.+...++. -.+..-.+...++|++.++.+... .+.++++.. |+.....
T Consensus 219 f~~iD~~tm~v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 11 11111111110 012223344566777777765432 245555321 1110000
Q ss_pred -eeecCCCCC------------CCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCcee-------------eeeccCC
Q 001318 928 -FLQIPTGRT------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-------------VKQWVPR 979 (1101)
Q Consensus 928 -~~~~~~~~~------------~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~-------------~~~~~~~ 979 (1101)
-..+..+.. +...+...+.++|||++++++ -+.++.++|..+... .....
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 011111111 111345778999999999995 567899999885322 11221
Q ss_pred CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 980 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 980 ~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
-.-.....+|.++|....+-..|..|..|++...
T Consensus 376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred -CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 1456788999999955566668999999999764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.89 E-value=1.4 Score=46.80 Aligned_cols=219 Identities=12% Similarity=0.101 Sum_probs=111.1
Q ss_pred CeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEec----cC-------eEEEEEeecceE--eeeecCcccC
Q 001318 826 GKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMD----DS-------SIQIYNVRVDEV--KSKLKGHSKR 891 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~----dg-------~v~vwd~~~~~~--~~~l~~h~~~ 891 (1101)
..+..||..+.+-... +..........+... ++++++.|+. ++ .+.+||..+.+- +..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4588999987664432 221122223333344 7788888883 12 277888776542 2222211111
Q ss_pred eeEEEEcCCCCEEEEEeCC-------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e-C---
Q 001318 892 ITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E--- 959 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-d--- 959 (1101)
-..+.+ +++.++.||.+ ..+.+||..+.+-.... ...... .-.+++. .+++.++.+ . +
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r-----~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK--NLPIKV-----YGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC--CCSSCE-----ESCEEEE-ETTEEEEECCEESSSC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC--CCCCcc-----cccEEEE-ECCEEEEEcCCCCCCC
Confidence 122222 67778888764 24778888764422111 111110 1122222 466666663 2 1
Q ss_pred --CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeeeecCCCcccCCCCCC
Q 001318 960 --TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSS 1032 (1101)
Q Consensus 960 --~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1032 (1101)
..+.+||+.+.+-...-.... ...-.+++. -++++++.|+.+ ..+.+||+.+.+....-. +|.....
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~ 246 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE----FPQERSS 246 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC----CSSCCBS
T ss_pred ccceEEEEcCCCCEEEECCCCCC-CcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC----CCCcccc
Confidence 359999998876543322111 111122222 267777777643 357889998876543211 2222111
Q ss_pred CCccceEEEEeCCCCCEEEEEecC--------------CcEEEEeccCCC
Q 001318 1033 SNVHPLVIAAHPQEPNEFALGLSD--------------GGVHVFEPLESE 1068 (1101)
Q Consensus 1033 ~~v~~~~i~~~~~d~~~l~s~~~d--------------g~v~vW~~~~~~ 1068 (1101)
. ++... ++++++.|+.+ ..+.++|+.+.+
T Consensus 247 ~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 247 I-----SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp C-----EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred e-----EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 1 23332 46778887764 357778887754
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.069 Score=56.74 Aligned_cols=199 Identities=7% Similarity=0.025 Sum_probs=108.2
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCc-ccCeeEEE---EcCCCCEEEEE-eCCCceEEEeCCCcccccceeeecCCC
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLA---FSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTG 934 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~---~s~dg~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~ 934 (1101)
.++++++.||.|+-.|..+|+.+-+++.. ..++.... ...++..++.. +.||.|..++..+|.......+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999988877643 12222211 00133334333 589999999988875432111111100
Q ss_pred CCCCCCCCeEEEE------------cCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCC-----eeEEEEc-----C
Q 001318 935 RTPTAQSDTRVQF------------HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP-----ITHATFS-----C 992 (1101)
Q Consensus 935 ~~~~~~~v~~~~~------------s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~-----i~~l~~s-----p 992 (1101)
..-+.. +.+|..++.+.++.+...|+.+|+.+..+........ ..|.... -
T Consensus 91 -------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 91 -------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp -------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred -------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 000111 2445444447999999999999999988764321111 1111111 1
Q ss_pred CCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccc
Q 001318 993 DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1071 (1101)
Q Consensus 993 dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~ 1071 (1101)
.+..|+.+..+..|.+.+ .+|+ +..+....+.+... ...+. ..-..+. |+.+ +.++.||.|...|..+|+..|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 245677788888888777 5564 33322111111110 00000 0000011 3455 457889999999998888888
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.96 Score=49.04 Aligned_cols=59 Identities=8% Similarity=-0.068 Sum_probs=31.5
Q ss_pred eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC------eEEEEEcCCceeeeecC
Q 001318 961 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA------TVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg------~v~vwd~~~~~~~~~~~ 1021 (1101)
.+.+||+.+.+-...-.... ......++.-++++++.|+.++ .|.++++++++.+....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQ--GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSS--CCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCC--CcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 57899988765433211111 1111222334788888888653 36667998888876554
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.49 Score=49.95 Aligned_cols=187 Identities=12% Similarity=0.092 Sum_probs=98.4
Q ss_pred CCCEEEEEe-C-----CeEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEeccC-----eEEEEEeecce--
Q 001318 816 NDSYVMSAS-G-----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE-- 880 (1101)
Q Consensus 816 dg~~la~~s-d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~-- 880 (1101)
+++.++.|+ + ..+.+||..+.+-... +........++ . - ++++++.|+.++ .+.+||..+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA-V-L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-E-E-TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE-E-E-CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 666666665 3 3588999887543322 22111112222 2 2 677888887653 57788877653
Q ss_pred EeeeecCcccCeeEEEEcCCCCEEEEEeCC-------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 881 VKSKLKGHSKRITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
.+..+.........+.+ +++.++.||.+ ..+.+||+.+.+-.... ...... .-.+++. -+++.
T Consensus 138 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r-----~~~~~~~-~~~~i 207 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA--EMSTRR-----SGAGVGV-LNNLL 207 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC--CCSSCC-----BSCEEEE-ETTEE
T ss_pred ecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC--CCcccc-----ccccEEE-ECCEE
Confidence 23222221111222222 67777777653 34788998775422111 111111 1122222 25666
Q ss_pred EEEE-eC-----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC-----eEEEEEcCCceee
Q 001318 954 FLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLR 1017 (1101)
Q Consensus 954 la~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg-----~v~vwd~~~~~~~ 1017 (1101)
++.+ .+ ..+.+||+.+.+-...-.... ...-.+++ .-++++++.|+.++ .|.+||..+.+-.
T Consensus 208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM-CRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEECCBSSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EEECCCCCCcccceEEEEeCCCCCEeeCCCCCC-ccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 6664 32 479999998876543322111 11111222 23778888887654 4899999887654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.73 Score=48.72 Aligned_cols=187 Identities=11% Similarity=0.049 Sum_probs=97.6
Q ss_pred CCCEEEEEeC----------CeEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEecc-----CeEEEEEeec
Q 001318 816 NDSYVMSASG----------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 878 (1101)
Q Consensus 816 dg~~la~~sd----------g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~ 878 (1101)
++++++.|+. ..+.+||..+.+-... +........++. - ++++++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--I-DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--E-TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE--E-CCEEEEEcCCCCCcccccEEEECCCC
Confidence 5666665542 4588999877543222 211111222222 2 67788887754 3688899876
Q ss_pred ce--EeeeecCcccCeeEEEEcCCCCEEEEEeCC-----CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 879 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 879 ~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
.+ .+..+......-..+.+ ++++++.||.+ ..+.+||+.+.+-..... .... ..-.+++.. ++
T Consensus 147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~-----r~~~~~~~~-~~ 216 (308)
T 1zgk_A 147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA--MNTI-----RSGAGVCVL-HN 216 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC--CSSC-----CBSCEEEEE-TT
T ss_pred CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC--CCCc-----cccceEEEE-CC
Confidence 54 22222211111222233 67778887765 458889987754221111 1111 111222222 66
Q ss_pred cEEEEE-eC-----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceee
Q 001318 952 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1017 (1101)
Q Consensus 952 ~~la~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~ 1017 (1101)
+.++.+ .+ ..+.+||+.+.+-...-.... ...-.+++. -++++++.|+.+ ..|.+||..+.+..
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC-CccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 666664 32 569999998876544322111 111122222 267787877754 35888998877654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.29 Score=47.52 Aligned_cols=148 Identities=12% Similarity=0.052 Sum_probs=84.4
Q ss_pred CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE------eeee--cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 847 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV------KSKL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~------~~~l--~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
..+..++|+| ++.+.++ .+|.++-.+..+... -..+ .+... -.++.|.++|.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 4678999999 8987777 778776666543111 0111 01112 478999999988888 5688877765
Q ss_pred CCcccccceee--ecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceee-----eeccCCCCCCCeeEEEEc
Q 001318 919 DGWEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV-----KQWVPRESSAPITHATFS 991 (1101)
Q Consensus 919 ~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~-----~~~~~~~h~~~i~~l~~s 991 (1101)
.+.......-. .+-.+.- ..+..+.|.|+|.+.++. |+.+.-....+.... ............+.+.|+
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 33222111000 0000000 256899999999999988 888543333221110 001111223345567788
Q ss_pred CCCCEEEEEEcCCeE
Q 001318 992 CDSQLVYACFLDATV 1006 (1101)
Q Consensus 992 pdg~~l~s~s~dg~v 1006 (1101)
++|.+.++. +|.+
T Consensus 191 ~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 191 SVGTLFGVQ--GGKF 203 (236)
T ss_dssp TTSCEEEEE--TTEE
T ss_pred CCCcEEEEe--CCeE
Confidence 888876655 6643
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.065 Score=52.00 Aligned_cols=146 Identities=13% Similarity=0.010 Sum_probs=82.8
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCcee------eEec-CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM------ATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~------~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
.+..++|+|+|.+.++ .+|.++-.+..+.... ..+- .--....++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999998887 8888777776542221 1110 0011147899999 8888877 5698887775331
Q ss_pred eEe------eee-cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccce--eeecCCCCCCCCCCCeEEEEcCC
Q 001318 880 EVK------SKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 880 ~~~------~~l-~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
..- .++ .+-=..+..|.|.|+|.+.+.. |+.+.-+...++...... ...+-.+.. ..-+.+.|+++
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~---~~yr~l~f~~~ 192 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW---DTFKFLFFSSV 192 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG---GGEEEEEECTT
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc---ceEEEEEECCC
Confidence 100 001 1111457899999999888776 776543333221100000 000000000 12345679999
Q ss_pred CcEEEEEeCCeE
Q 001318 951 QIHFLVVHETQL 962 (1101)
Q Consensus 951 g~~la~~~d~~v 962 (1101)
|...++. ++.+
T Consensus 193 G~l~~v~-~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ-GGKF 203 (236)
T ss_dssp SCEEEEE-TTEE
T ss_pred CcEEEEe-CCeE
Confidence 9888777 6643
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.25 E-value=2.6 Score=44.07 Aligned_cols=173 Identities=14% Similarity=0.088 Sum_probs=98.7
Q ss_pred EecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc--------------CeEEEEE
Q 001318 813 LSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYN 875 (1101)
Q Consensus 813 ~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d--------------g~v~vwd 875 (1101)
|+.++.+++... ++.|+..+..... ...+.. -.+--+++ ++.+|+..... ..|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----CceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 345777777764 4677777765433 334331 12345678 66777666542 3566666
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEe--CCCc--eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s--~D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
+...+ ...+.. .. +..|++++++|+-.. .++. |..-++++... ..+. .+ .+ .+|+++|
T Consensus 95 ~dg~~-~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~~lt---~~------~~--~~~~~~g 156 (302)
T 3s25_A 95 RNGHG-STVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--KKIK---NH------YL--FTCNTSD 156 (302)
T ss_dssp TTSCC-CEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--EEEE---SS------CC--CCSEEET
T ss_pred CCCCc-ceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--EEEe---CC------Cc--eEeeEEC
Confidence 66543 222221 11 236788999988765 3444 44445554321 1111 11 11 3568899
Q ss_pred cEEEEEe--CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC--CeEEEEEcCCce
Q 001318 952 IHFLVVH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLK 1015 (1101)
Q Consensus 952 ~~la~~~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d--g~v~vwd~~~~~ 1015 (1101)
+.|.-.. ..+|.+.++..+.....+. + ... ..+.|++++|+-...+ ..|..-+++.+.
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD--C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC--S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC--C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 9888754 4678888887766544432 1 222 3466999998876644 356666766554
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.23 E-value=1.2 Score=47.31 Aligned_cols=193 Identities=8% Similarity=0.012 Sum_probs=97.8
Q ss_pred EEecCCCEEEEEe-C----C-------eEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEecc-------Ce
Q 001318 812 ALSKNDSYVMSAS-G----G-------KISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-------SS 870 (1101)
Q Consensus 812 ~~s~dg~~la~~s-d----g-------~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d-------g~ 870 (1101)
+...+++.++.|+ . + .+.+||..+.+-... +........ ++.. ++++++.|+.+ ..
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG-LGEV--DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE-EEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc-eEEE--CCEEEEEcCccCCCCcccce
Confidence 3445777777775 1 1 177888876543221 221111122 2222 57788888764 35
Q ss_pred EEEEEeecce--EeeeecCcccCeeEEEEcCCCCEEEEEeCC------CceEEEeCCCcccccceeeecCCCCCCCCCCC
Q 001318 871 IQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 942 (1101)
Q Consensus 871 v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 942 (1101)
+.+||..+.+ .+..+......-..+. .++++++.||.+ ..+.+||+.+.+-.... ...... .-
T Consensus 129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r-----~~ 199 (318)
T 2woz_A 129 VLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA--PMKTPR-----SM 199 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC--CCSSCC-----BS
T ss_pred EEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC--CCCCCc-----cc
Confidence 7888887643 2222221111111222 467777777642 35889998875422111 111111 11
Q ss_pred eEEEEcCCCcEEEEE-eC-----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-------------
Q 001318 943 TRVQFHQDQIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------------- 1003 (1101)
Q Consensus 943 ~~~~~s~dg~~la~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d------------- 1003 (1101)
.+++. -+++.++.+ .+ ..+.+||+.+.+-...-.... ...-.+++ .-++++++.|+.+
T Consensus 200 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~ 276 (318)
T 2woz_A 200 FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTE 276 (318)
T ss_dssp CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEE-EETTEEEEECCBCCBC----CCBCCB
T ss_pred ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEE-EECCEEEEECCeeccCCCCceeccce
Confidence 22222 256666663 22 357899998876543322111 11111222 2367777777654
Q ss_pred -CeEEEEEcCCceeeee
Q 001318 1004 -ATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 1004 -g~v~vwd~~~~~~~~~ 1019 (1101)
..+.+||..+.+-...
T Consensus 277 ~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 277 VNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCCEEEEETTTTEEEEE
T ss_pred eeeEEEEeCCCCEehhh
Confidence 3588899888766543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.7 Score=57.72 Aligned_cols=247 Identities=9% Similarity=0.095 Sum_probs=136.4
Q ss_pred EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCC
Q 001318 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 429 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 429 (1101)
+.-.+|..+ ++|.-. ..++.|+|+++.+.+....+ ...|..=.|-.+..+ +-.+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~l-~lVT-~~ 125 (1630)
T 1xi4_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNTV-ALVT-DN 125 (1630)
T ss_pred hhccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCee-EEEc-CC
Confidence 344567766 455443 57899999999887764222 234555555544433 3332 45
Q ss_pred eEEEEEccCCceeeeeeeeccc----cCCeeEEEEcCCCCeEEEEEec------CCCcEEEEeCCCCceEEEecCcccCe
Q 001318 430 IVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 430 ~i~iwd~~~~~~~~~~~~l~~h----~~~V~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
.|.-|++.+...... .+..| ...|..-.-+++.+. ++++|= -.|.+.+|..+.+. .+.+.||.+..
T Consensus 126 aVyHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F 201 (1630)
T 1xi4_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASF 201 (1630)
T ss_pred eEEEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhh
Confidence 699999975332221 23333 346777778888886 333332 45788888865443 35567776655
Q ss_pred EEEeeeecCCccEEEEEec----CCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCC
Q 001318 500 YSVCPHHKENIQFIFSTAL----DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 574 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~----dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1101)
..+.....+....+++-.. .+.+++-++... .... .-......+.|.|+.. ..-...+.+++.-.
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~---~f~kk~~~~~~~~~~~-------~Dfpv~~~vs~k~g 271 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 271 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC---CCccccccccCCcccc-------cCcceEEEeccccC
Confidence 4443322222122322221 267888877543 1111 1112233445555432 12334566777777
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 575 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
.+...+.-|.|.+||+.++.++..-+.... .|...+......-++.....|.|.-..+..
T Consensus 272 ~iy~itk~G~~~~~d~~t~~~i~~~ris~~--~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 272 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred EEEEEecCceEEEEecccchhhhhccccCC--ceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 888889999999999999998766554333 232223333222333344556665555543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.81 E-value=5.1 Score=42.62 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=65.5
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC---CC
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 420 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 420 (1101)
.-...+.++|.|||+ ++++--..|.|++++..+++......+ ..+..........|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence 345679999999998 466554489999998766543211000 0022334567899999995 44
Q ss_pred eEEEE-E--cCCeEEEEEccCCc----e---eeeee-eec-cccCCeeEEEEcCCCCeEEEEEe
Q 001318 421 LFGVA-Y--SRHIVQIYSYHGGD----E---VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITC 472 (1101)
Q Consensus 421 ~las~-~--~d~~i~iwd~~~~~----~---~~~~~-~l~-~h~~~V~~~~~s~d~~~~~l~s~ 472 (1101)
+|... + .+..|.-|.+..+. . .+.+. .+. +....-..|+|.|||. ++++.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~ 157 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGT 157 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEE
Confidence 45443 2 34566667665521 1 11111 121 1122456799999997 45553
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.24 Score=52.55 Aligned_cols=147 Identities=12% Similarity=0.008 Sum_probs=73.0
Q ss_pred CCeEEEEECCCCceeeEecC----CCCCeEE---EEE-----ecCCCcEEEEEeccCeEEEEEeecceEeeeecCcc--c
Q 001318 825 GGKISLFNMMTFKTMATFMP----PPPAATF---LAF-----HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS--K 890 (1101)
Q Consensus 825 dg~i~vwd~~~~~~~~~~~~----~~~~i~~---l~~-----sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~--~ 890 (1101)
||.|..++..+|.....+.. ...++.. ..+ +. .+..+++|+.+|.++..|+.+|+.+..+.... +
T Consensus 66 dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~-~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~ 144 (339)
T 2be1_A 66 DGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIV-EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNG 144 (339)
T ss_dssp TTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC-----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC
T ss_pred CCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccc-cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcc
Confidence 88888888887754433321 1111111 001 01 34577889999999999999999988875321 1
Q ss_pred C-----eeEEEEc-----CCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC
Q 001318 891 R-----ITGLAFS-----HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 960 (1101)
Q Consensus 891 ~-----V~~l~~s-----~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 960 (1101)
. ..|.... ..+..|+.+..+..+.+.+ .+|+ .......................++.|+.++++..|+
T Consensus 145 ~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg 222 (339)
T 2be1_A 145 YFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDK 222 (339)
T ss_dssp --------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTT
T ss_pred cccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCC
Confidence 0 0111110 1234566666666666655 3332 1111000000000000000001123457776667888
Q ss_pred eEEEEEcCCceeee
Q 001318 961 QLAIFETTKLECVK 974 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~ 974 (1101)
.|..+|..+|..+-
T Consensus 223 ~v~A~d~~~G~~~W 236 (339)
T 2be1_A 223 SLLASDLDFRIARW 236 (339)
T ss_dssp EEEEECSTTCCEEE
T ss_pred EEEEEECCCCcEEE
Confidence 88888888877654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=1.9 Score=51.41 Aligned_cols=197 Identities=10% Similarity=0.068 Sum_probs=106.1
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCCceeeEe-c-------CCCCCeEEEEEecCCCcEEEEEeccC------eEEEEE
Q 001318 815 KNDSYVMSAS-G----GKISLFNMMTFKTMATF-M-------PPPPAATFLAFHPQDNNIIAIGMDDS------SIQIYN 875 (1101)
Q Consensus 815 ~dg~~la~~s-d----g~i~vwd~~~~~~~~~~-~-------~~~~~i~~l~~sp~d~~~lasg~~dg------~v~vwd 875 (1101)
.++..++.|+ + ..+.+||..+.+-...- . .....-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5666667665 3 45889998876543322 1 1112233444433 567888887543 578899
Q ss_pred eecc--eEeeeecCcccCeeEEEEcCCCCEEEEEeCCC--ceEEEeCCCcccccceeee-cCCCCCCCCCCCeEEEEcCC
Q 001318 876 VRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 876 ~~~~--~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~d 950 (1101)
..+. +.+..+......- +++...++++++.||.++ .+.+||..+..-....... ..... .....+.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCC
Confidence 8774 3333332111111 222223788888888765 6889998875421111100 11111 12344666665
Q ss_pred -CcEEEEE-e--C-----CeEEEEEcCCce------eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC--------CeEE
Q 001318 951 -QIHFLVV-H--E-----TQLAIFETTKLE------CVKQWVPRESSAPITHATFSCDSQLVYACFLD--------ATVC 1007 (1101)
Q Consensus 951 -g~~la~~-~--d-----~~v~vwd~~~~~------~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d--------g~v~ 1007 (1101)
++.++.+ . + +.+.+||+.+.. .............-.+++...++++++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 6666664 3 2 468999998877 22111100001111233333347888888743 4599
Q ss_pred EEEcCCceee
Q 001318 1008 VFSAANLKLR 1017 (1101)
Q Consensus 1008 vwd~~~~~~~ 1017 (1101)
+||..+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999988765
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.43 E-value=3.9 Score=45.71 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=61.8
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC--CCCCCCCeEEEEcCC---CcEEEE--Ee-----
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR--TPTAQSDTRVQFHQD---QIHFLV--VH----- 958 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d---g~~la~--~~----- 958 (1101)
.-++|+|.|||+++++-...+.|++++..++.... ........ ......+..++|+|| +.+|.+ +.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 46799999999988875544568888765544221 11221111 011246679999995 444444 22
Q ss_pred -------CCeEEEEEcCCc-------eeee-eccCCCCCCCeeEEEEcCCCCEEEEEEc
Q 001318 959 -------ETQLAIFETTKL-------ECVK-QWVPRESSAPITHATFSCDSQLVYACFL 1002 (1101)
Q Consensus 959 -------d~~v~vwd~~~~-------~~~~-~~~~~~h~~~i~~l~~spdg~~l~s~s~ 1002 (1101)
...|.-|+...+ +.+. .+. .........|+|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence 235655655321 1111 122 122235789999999998776553
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.09 E-value=12 Score=40.83 Aligned_cols=260 Identities=9% Similarity=0.029 Sum_probs=118.4
Q ss_pred CCCeeEEEEec--CCCEEEEEeCC----eEEEEECCCCceeeEec------C--------CCCCeEEEEEecCC-CcEEE
Q 001318 805 EEAVPCFALSK--NDSYVMSASGG----KISLFNMMTFKTMATFM------P--------PPPAATFLAFHPQD-NNIIA 863 (1101)
Q Consensus 805 ~~~i~~~~~s~--dg~~la~~sdg----~i~vwd~~~~~~~~~~~------~--------~~~~i~~l~~sp~d-~~~la 863 (1101)
...|.++++.| ++.+++.+..| .|...+ ..++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 55565555554 444432 2222212211 1 11247789998743 44555
Q ss_pred EEeccCeEEEEEee--cceEeeeecC----------------cccCeeEEEEcCC-CCEEEEEeCCCceEEEeCCCcccc
Q 001318 864 IGMDDSSIQIYNVR--VDEVKSKLKG----------------HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQ 924 (1101)
Q Consensus 864 sg~~dg~v~vwd~~--~~~~~~~l~~----------------h~~~V~~l~~s~d-g~~l~s~s~D~~v~iwd~~~~~~~ 924 (1101)
++...+.|+..+-. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+- .++ .
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~-t 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGT-D 210 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTS-S
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCC-C
Confidence 56556655544211 1222221111 1235788999873 344444443443433322 221 1
Q ss_pred cceeeec-CC-CCCC-----CCCCCeEEEEcCC-CcEEEEEeCCeEEEEEcCCceeeeeccCCCCC---CCeeEEEEcC-
Q 001318 925 KNRFLQI-PT-GRTP-----TAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECVKQWVPRESS---APITHATFSC- 992 (1101)
Q Consensus 925 ~~~~~~~-~~-~~~~-----~~~~v~~~~~s~d-g~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~---~~i~~l~~sp- 992 (1101)
...+.. .. ...+ ....+..++++|+ ...|.++..+.|...+-. ++.-..+...-.. ..+.++++.|
T Consensus 211 -W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 -WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp -CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred -ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCC
Confidence 111110 00 0000 0024788999986 355555555655554422 2222222210001 3467788886
Q ss_pred CCCEEEEEEc-----------CCeEEEEEcCC-ceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEE
Q 001318 993 DSQLVYACFL-----------DATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1060 (1101)
Q Consensus 993 dg~~l~s~s~-----------dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~ 1060 (1101)
+...|.++.. ++...||...+ |+.-..+. .-++....-..+....++++|.++..|+.++.++.|
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 3344444432 33345665544 34333332 112221100011122577888666667777666654
Q ss_pred EEeccCCCccccC
Q 001318 1061 VFEPLESEGKWGV 1073 (1101)
Q Consensus 1061 vW~~~~~~~~~~~ 1073 (1101)
|.-.++..+|..
T Consensus 366 -~~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 -WASADEGEHWQC 377 (394)
T ss_dssp -EEESSTTSBCEE
T ss_pred -EEECCCCCCceE
Confidence 444444445543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=92.86 E-value=10 Score=39.47 Aligned_cols=174 Identities=12% Similarity=0.136 Sum_probs=101.4
Q ss_pred EEEecCCCEEEEEe-C--------------CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe--ccC--eE
Q 001318 811 FALSKNDSYVMSAS-G--------------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDS--SI 871 (1101)
Q Consensus 811 ~~~s~dg~~la~~s-d--------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~--~dg--~v 871 (1101)
--++++|.+|+... . ..|+..++...+... +.. . .+..|++ ++++|+... .++ .|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~--~~~~~s~-~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--D--PCIYASL-IGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--S--CEEEEEE-ETTEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--C--CccEEEE-eCCEEEEEeecCCCCceE
Confidence 45678999988876 2 247777777654332 321 1 2236788 677777665 344 44
Q ss_pred EEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 872 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 872 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
+.-++. +.....+..+.. .+|+++++.|.-.+. ...|.+-++.++... .+ ..+. ....++|+
T Consensus 132 y~~~~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~l---~~~~-------~~~~~~P~ 194 (302)
T 3s25_A 132 YRIRID-GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--LF---YDCN-------CYKPVVLD 194 (302)
T ss_dssp EEEETT-SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE--EE---ECSC-------EEEEEEEE
T ss_pred EEEECC-CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE--EE---eCCC-------ccceeeec
Confidence 444544 333445544432 456788988886665 567777787765422 11 1221 23456799
Q ss_pred CcEEEEEe--C-CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEc--CCeEEEEEcCCc
Q 001318 951 QIHFLVVH--E-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL--DATVCVFSAANL 1014 (1101)
Q Consensus 951 g~~la~~~--d-~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~--dg~v~vwd~~~~ 1014 (1101)
+.+|+-.. + ..|..-++...... .+. ...+ ..|+|++++|+.++. .+.|..-+++..
T Consensus 195 g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 195 DTNVYYMDVNRDNAIVHVNINNPNPV-VLT----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp TTEEEEEEGGGTTEEEEECSSSCCCE-ECS----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCEEEEEEcCCCcEEEEEECCCCCeE-EEe----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 99988742 2 36777777665533 222 2233 348888998876543 355666666543
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=92.79 E-value=0.17 Score=46.67 Aligned_cols=78 Identities=14% Similarity=0.287 Sum_probs=61.1
Q ss_pred ehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHHH
Q 001318 59 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIML 131 (1101)
Q Consensus 59 ~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 131 (1101)
++|.|+-+.|||||..|..++|..+|.+--..+.....+.+++|+.+....+..+++....+.. .+.+-..|+
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~ 131 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 131 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHH
Confidence 8999999999999999999999999997544445567899999999888777776666666654 244556666
Q ss_pred HHHhh
Q 001318 132 VELKK 136 (1101)
Q Consensus 132 ~~l~~ 136 (1101)
.-|++
T Consensus 132 ~fL~~ 136 (156)
T 2nxp_A 132 RHLQE 136 (156)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66666
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.37 E-value=9.6 Score=39.28 Aligned_cols=223 Identities=13% Similarity=0.069 Sum_probs=114.6
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 886 (1101)
.|..++....- .++.. ||.|+.|-......+..-......|..++... ...++. . ||.|+.|-......+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 46666654432 23333 88888887654322211111123577777653 345555 4 9999999865422221111
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEE
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 966 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd 966 (1101)
.-...|..|+...+. .+... ||.|..|-.....+... ... ....|..++...+-..+ .. |+.|..|-
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~---~~~-----~~~~i~~i~~G~~~~~~-l~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTV---PAE-----AQSGVTALDGGVYTALA-VK-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSC---CGG-----GGSSEEEEEECSSEEEE-EE-TTEEEEEE
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCC---Ccc-----CCCCeEEEEcccCEEEE-EE-CCEEEEec
Confidence 113468888776543 33334 89999997654222110 000 01245555544433222 24 88999987
Q ss_pred cCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 967 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 967 ~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
.....++.... .-...|..++-..+..+ +. .||.|+.|-....-.+. .|.. ....+. .|+.-.
T Consensus 166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gqlg-------~p~~-~~~~v~--~i~~G~-- 228 (282)
T 3qhy_B 166 DNYFGQTTVPA--EAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTT-------VPTE-ALSGVS--AIASGE-- 228 (282)
T ss_dssp CCTTSTTSCCG--GGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTC-------CCGG-GGSSCC--EEEECS--
T ss_pred CCCCCCCCCce--ecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCCC-------CCcc-cCCCce--EEEcCC--
Confidence 66533322111 11346777776544333 33 59999999765432221 0100 011133 455433
Q ss_pred CCEEEEEecCCcEEEEeccCC
Q 001318 1047 PNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
...++.. ||.|+.|=-...
T Consensus 229 ~h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 229 WYSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp SCEEEEE--TTEEEEESTTCC
T ss_pred CEEEEEE--CCEEEEecCCCC
Confidence 2344444 999999986543
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.12 Score=46.33 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=58.9
Q ss_pred ehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHHH
Q 001318 59 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIML 131 (1101)
Q Consensus 59 ~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 131 (1101)
++|.|+-+.||||+..|..++|..++.+--..+... .+.+++|+.+....+..+++....+.. .+.+-..|+
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~ 111 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 111 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 899999999999999999999999998755555555 899999999988877776666555533 245556666
Q ss_pred HHHhh
Q 001318 132 VELKK 136 (1101)
Q Consensus 132 ~~l~~ 136 (1101)
.-|++
T Consensus 112 ~fL~~ 116 (138)
T 2j4b_A 112 NFLEE 116 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
|
| >2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=90.78 E-value=0.1 Score=47.42 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=56.8
Q ss_pred ehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHHH
Q 001318 59 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIML 131 (1101)
Q Consensus 59 ~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 131 (1101)
++|.|+-+.||||+..| .++|..+|.+--..+.....+.+++|+.+....+..+++....+.. .+.+-..|+
T Consensus 35 lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~ 113 (148)
T 2j49_A 35 IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLL 113 (148)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 89999999999999999 9999999986444444456788889988888777776666555543 234445555
Q ss_pred HHHhh
Q 001318 132 VELKK 136 (1101)
Q Consensus 132 ~~l~~ 136 (1101)
.-|++
T Consensus 114 ~fL~~ 118 (148)
T 2j49_A 114 YFLNE 118 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.03 E-value=9.9 Score=45.22 Aligned_cols=196 Identities=12% Similarity=0.050 Sum_probs=102.0
Q ss_pred CCcEEEEEecc----CeEEEEEeecce--Eee-e-----ecCcccCeeEEEEcCCCCEEEEEeCCC------ceEEEeCC
Q 001318 858 DNNIIAIGMDD----SSIQIYNVRVDE--VKS-K-----LKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSD 919 (1101)
Q Consensus 858 d~~~lasg~~d----g~v~vwd~~~~~--~~~-~-----l~~h~~~V~~l~~s~dg~~l~s~s~D~------~v~iwd~~ 919 (1101)
++.+++.|+.+ ..+.+||..+++ .+. . +......-..+.+..+++.++.||.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 66777777753 368888887653 222 1 111111122233322778888887543 47888888
Q ss_pred CcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCC--eEEEEEcCCceeeeecc---CCCCCCCeeEEEEcCC
Q 001318 920 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWV---PRESSAPITHATFSCD 993 (1101)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~--~v~vwd~~~~~~~~~~~---~~~h~~~i~~l~~spd 993 (1101)
+.+-.....+ ... ..-.+++.-.+++.++.| .++ .+.+||..+..-...-. .......-.++.+..+
T Consensus 477 t~~W~~~~~~--p~~-----R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 477 TREWSMIKSL--SHT-----RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTEEEECCCC--SBC-----CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCcEEECCCC--CCC-----cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 7432111111 111 112334443477777773 322 79999998876543321 0001112233555555
Q ss_pred -CCEEEEEEc--C-----CeEEEEEcCCcee-----eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC----
Q 001318 994 -SQLVYACFL--D-----ATVCVFSAANLKL-----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---- 1056 (1101)
Q Consensus 994 -g~~l~s~s~--d-----g~v~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d---- 1056 (1101)
+++++.|+. + ..+.+||+.+... -..+......+.. .. ++.... ++++++.|+.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~--~~-----~~~~~~-~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY--GS-----QIKYIT-PRKLLIVGGTSPSGL 621 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB--SC-----EEEEEE-TTEEEEECCBCSSCC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc--cc-----eEEEeC-CCEEEEECCccCCCC
Confidence 677777775 2 3589999988772 1122110001110 11 222222 26788888753
Q ss_pred ----CcEEEEeccCCC
Q 001318 1057 ----GGVHVFEPLESE 1068 (1101)
Q Consensus 1057 ----g~v~vW~~~~~~ 1068 (1101)
..+.++|+.+.+
T Consensus 622 ~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 622 FDRTNSIISLDPLSET 637 (695)
T ss_dssp CCTTTSEEEEETTTTE
T ss_pred CCCCCeEEEEECCCCe
Confidence 458899987765
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=23 Score=37.95 Aligned_cols=156 Identities=8% Similarity=0.081 Sum_probs=89.8
Q ss_pred CeEEEEECCCC--ceeeEecCC------CCCeEEEEEe---cC---CCcEEEEEe-ccCeEEEEEeecceEeeeecCccc
Q 001318 826 GKISLFNMMTF--KTMATFMPP------PPAATFLAFH---PQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 826 g~i~vwd~~~~--~~~~~~~~~------~~~i~~l~~s---p~---d~~~lasg~-~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
-+|.+||+.+. +.++++.-. ......+++. |. ++.++..++ ..+.|.|||+.+++..+.+..+
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 35778888888 777775422 3357788887 21 134555554 4678999999998877665311
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC----CcEEEEEeCCeEEEEE
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQLAIFE 966 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----g~~la~~~d~~v~vwd 966 (1101)
|.|+.....+. +|.-.-|. ..+..+++||+ ++.|....-..-++|.
T Consensus 201 ------~~pd~~~~~~i--~G~~~~~~----------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~ 250 (381)
T 3q6k_A 201 ------FKAERPTKFDY--GGKEYEFK----------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYS 250 (381)
T ss_dssp ------GSCCSCEEEEE--TTEEEEEC----------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred ------CccccCcceEE--CCEEeEec----------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence 34542111111 22211121 25688999998 7777775433444454
Q ss_pred cCCc--------eeeeeccCCCCCCCeeEEEEc-CCCCEEEEEEcCCeEEEEEcCC
Q 001318 967 TTKL--------ECVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 967 ~~~~--------~~~~~~~~~~h~~~i~~l~~s-pdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
+.+. ..++.+-..+....-..+++. .+|.++++--....|..|+..+
T Consensus 251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 4321 111111111112334456775 6787778777888999999875
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=89.39 E-value=31 Score=40.87 Aligned_cols=236 Identities=12% Similarity=0.124 Sum_probs=121.8
Q ss_pred eEEE-EecCCCEEEEEe--C----CeEEEEECCCCceeeE-ecCCCC--------CeEEEEEecCCCcEEEEEe------
Q 001318 809 PCFA-LSKNDSYVMSAS--G----GKISLFNMMTFKTMAT-FMPPPP--------AATFLAFHPQDNNIIAIGM------ 866 (1101)
Q Consensus 809 ~~~~-~s~dg~~la~~s--d----g~i~vwd~~~~~~~~~-~~~~~~--------~i~~l~~sp~d~~~lasg~------ 866 (1101)
..+. ++||+++++.+- + ..++++|+.+++.+.. |. ... ....++|.. +..++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCB
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEEC-CCEEEEEeCCCCCCc
Confidence 3344 889999888762 3 3599999999876632 22 111 113457875 444444321
Q ss_pred ----ccCeEEEEEeecc--eEeeeecCcccC-eeEEEEcCCCC-----EEEEEeCC---CceEEEeCCCcccccceeeec
Q 001318 867 ----DDSSIQIYNVRVD--EVKSKLKGHSKR-ITGLAFSHALN-----VLVSSGAD---SQLCVWSSDGWEKQKNRFLQI 931 (1101)
Q Consensus 867 ----~dg~v~vwd~~~~--~~~~~l~~h~~~-V~~l~~s~dg~-----~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~ 931 (1101)
....|+.|.+-+. +-...+.+.... -.+...++|++ .+++.+.+ ..+.+.+....... ...+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeec
Confidence 1247888877553 112223332222 23455567766 34554423 33455555431111 111111
Q ss_pred CCCCCCCCCCCeEEEEcCCCcEEEEE-----------eCCeEEEEEcCCce-------eeeeccCCCCCCCeeEEEEcCC
Q 001318 932 PTGRTPTAQSDTRVQFHQDQIHFLVV-----------HETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCD 993 (1101)
Q Consensus 932 ~~~~~~~~~~v~~~~~s~dg~~la~~-----------~d~~v~vwd~~~~~-------~~~~~~~~~h~~~i~~l~~spd 993 (1101)
.. -..+..+.++.+++.. ..+.|.+.|+.++. ....+........+..+.+..+
T Consensus 289 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 289 PS--------DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp CT--------TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred CC--------cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 11 1223445566666532 35678999987752 1222222233567888999876
Q ss_pred CCEEEEEEcCCe--EEEEEcCCce-eeee-cCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC---CcEEEEecc
Q 001318 994 SQLVYACFLDAT--VCVFSAANLK-LRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPL 1065 (1101)
Q Consensus 994 g~~l~s~s~dg~--v~vwd~~~~~-~~~~-~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d---g~v~vW~~~ 1065 (1101)
.++++...++. |+++|+.+++ .... +. ++.. +.+. .....++.+.++++.+.. +.++.+|+.
T Consensus 361 -~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~----lp~~---~~~~--~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 361 -RVFLATYDNVVAKVVTFTLENEQWTKPVVLK----LPYQ---NAIF--GMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp -CEEEEEEETTEEEEEEECEETTEECCCEEEC----CCST---TCEE--EEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred -EEEEEEEECCEEEEEEEECCCCceEEEeccC----CCCC---eEEE--EEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 56777777775 6777877775 2222 33 2211 1122 234445444455554433 467777765
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=86.95 E-value=3.5 Score=45.99 Aligned_cols=114 Identities=17% Similarity=0.107 Sum_probs=79.0
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCce-------------eeEecCCCCCeEEEEEecCCCcEEEEEeccC
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDS 869 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg 869 (1101)
......+.++|||+++++++ +.++.++|++.... ....+ -.-.....+|.+ +|.-..+-.-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34456789999999999988 78999999874211 11122 234578899999 786666677899
Q ss_pred eEEEEEeecc----------eEeeeecCcccCeeEEEE------cCCCCEEEEEe---CCCce----------EEEeCCC
Q 001318 870 SIQIYNVRVD----------EVKSKLKGHSKRITGLAF------SHALNVLVSSG---ADSQL----------CVWSSDG 920 (1101)
Q Consensus 870 ~v~vwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~l~s~s---~D~~v----------~iwd~~~ 920 (1101)
.|.-|++... ..+.++.-|-.+ -.+.- .+||++|++.. .|+.+ .+.|+..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG 478 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG 478 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence 9999999764 466666666543 23333 47999999975 45543 5667655
Q ss_pred c
Q 001318 921 W 921 (1101)
Q Consensus 921 ~ 921 (1101)
.
T Consensus 479 d 479 (638)
T 3sbq_A 479 D 479 (638)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=86.52 E-value=31 Score=35.33 Aligned_cols=184 Identities=9% Similarity=0.015 Sum_probs=98.0
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 886 (1101)
.|..++...+-. ++. .||.|+.|-......+..-..-...|..++... ...++ -. ||.|+.|-......+....
T Consensus 64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCCCCc
Confidence 456666544332 333 488888887654322211111124677777764 33333 45 9999999765422222212
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEE
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 966 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd 966 (1101)
.....|..++...+.. ++ .. |+.|..|-.....+... +... ...|..++...+... +. .++.|..|-
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg~-p~~~-------~~~v~~i~~G~~hs~-al-~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTTV-PAEA-------QSGVDDVAGGIFHSL-AL-KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTSC-CGGG-------GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCCC-ceec-------CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence 2335577777654432 23 33 78999997654222110 0000 124566665554443 33 799999997
Q ss_pred cCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 967 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 967 ~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
.....++..-. .-...|..++-..+..+.++ ||.|+.|-....
T Consensus 205 ~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 205 DNRYKQTTVPT--EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp CCTTSTTCCCG--GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred CCCCCCCCCCc--ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 65543322111 11345777776554444333 999999976554
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=85.40 E-value=9.1 Score=42.69 Aligned_cols=113 Identities=11% Similarity=0.040 Sum_probs=61.3
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCceEEEeCCCcccccceeeecCCCCC-----CCCCCCeEEEEcCC----CcEEEE-EeC
Q 001318 891 RITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQD----QIHFLV-VHE 959 (1101)
Q Consensus 891 ~V~~l~~s~dg~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~d----g~~la~-~~d 959 (1101)
.-++|+|.|||. .|+.+...|.|++++...... ......+..... ........++|+|+ +.+.++ +.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 457899999996 444556789999997543211 111111111000 11246788999997 444443 321
Q ss_pred ------------CeEEEEEcCC----------ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC
Q 001318 960 ------------TQLAIFETTK----------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1004 (1101)
Q Consensus 960 ------------~~v~vwd~~~----------~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg 1004 (1101)
..|.-|.+.. .+.+..+...........|+|.|||.+.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1344455532 12222222112223467899999998777666443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1101 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-18 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.004 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.004 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-04 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 1e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 5e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 6e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.002 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 0.002 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.2 bits (209), Expect = 6e-18
Identities = 55/376 (14%), Positives = 106/376 (28%), Gaps = 62/376 (16%)
Query: 304 INLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV 363
++L +P + ++ + + P ++ + ++L+ S + F L
Sbjct: 21 LDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLAT 79
Query: 364 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423
G N ++ V S LV R L + + + V +SPDG
Sbjct: 80 GCN-KTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137
Query: 424 VAYSRHIVQIYSYHGG-------------------------------------DEVRQHL 446
+++I+ D
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197
Query: 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPV 499
+ + P + D+ ++VWD+ G ++ GH+ V
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257
Query: 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 559
YSV Q + S +LD +K W N ++ D + P + Y
Sbjct: 258 YSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS-- 313
Query: 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNK 615
V L+ D + FWD S L + + +
Sbjct: 314 -------VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366
Query: 616 DGCLLAVSTNDNGIKI 631
+ + A + D +I
Sbjct: 367 EYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.4 bits (173), Expect = 2e-13
Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 31/195 (15%)
Query: 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 405
++ P + G+ + +W+ + G L +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--------------GFLVERLDSENESG 250
Query: 406 PGV--SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV---------GG 454
G SV V+++ DG V++++ + ++
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310
Query: 455 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI---- 510
V +A + ++ +++ D+ + WD +G + +GH V SV + ++
Sbjct: 311 VLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368
Query: 511 QFIFSTALDGKIKAW 525
+ + D K + W
Sbjct: 369 NVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.4 bits (142), Expect = 1e-09
Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 20/132 (15%)
Query: 805 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAA------------TF 851
+++V +++ V+S S + L+N+ + P
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 852 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL------NVLV 905
+A ++ I G D + ++ + L+GH + +A ++ NV
Sbjct: 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
Query: 906 SSGADSQLCVWS 917
+ D + +W
Sbjct: 373 TGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 32/255 (12%), Positives = 72/255 (28%), Gaps = 17/255 (6%)
Query: 773 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 832
+ GK A+ A I V E + + G ++
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 833 M-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV-------RVDEVKSK 884
+ + + T +A P D IA G D ++++++ R+D
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 885 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-- 942
GH + + F+ +VS D + +W+ + + T
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 943 --TRVQFHQDQIHFLVVHET-QLAIFETTKLECVKQWVPRESS----APITHATFSCDSQ 995
V Q+ + L + + ++ + +S A ++ +
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369
Query: 996 LVYACFLDATVCVFS 1010
+ D ++
Sbjct: 370 VFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.7 bits (135), Expect = 8e-09
Identities = 22/194 (11%), Positives = 56/194 (28%), Gaps = 31/194 (15%)
Query: 414 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVR----QHLEIDAHVGGVNDIAFSHPNKQLCV 469
+ DG V+++ G V ++ H V + F+ + +
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-- 269
Query: 470 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI----------QFIFSTALD 519
++ D+++K+W+ N + + + V ++ ++I S + D
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329
Query: 520 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579
+ W + + + ++A + N F
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANG---------------SSLGPEYNVFATG 374
Query: 580 GDDFSIKFWDMDSV 593
D + W +
Sbjct: 375 SGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.4 bits (129), Expect = 4e-08
Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 17/142 (11%)
Query: 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 405
S S+ F ++ G+ + LW + + +
Sbjct: 255 DSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-------IG 306
Query: 406 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---- 461
V V + + V + G+ + + H V +A +
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL---MLQGHRNSVISVAVANGSS 363
Query: 462 -HPNKQLCVITCGDDKTIKVWD 482
P + T D ++W
Sbjct: 364 LGPEYNV-FATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 4e-05
Identities = 48/333 (14%), Positives = 104/333 (31%), Gaps = 67/333 (20%)
Query: 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG---------------- 494
H V + FS+ + L G +KT +V+ ++G+
Sbjct: 61 HTSVVCCVKFSNDGEYLA---TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117
Query: 495 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 552
+ + SVC + +F+ + A D I+ W +N + + + ++ Y G
Sbjct: 118 PSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175
Query: 553 TRTYQGFRKRSL---------------------GVVQFDTTKNRFLAAGDDFSIKFWDMD 591
+ G R++ V A D +++ WD +
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235
Query: 592 SVQLLTSIDADGGLPASPR-----IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 646
+ L+ +D++ + + F +DG + + D +K+ + +
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295
Query: 647 LAYDASRTSENSKPTISPISAAAAAAATSAGLADR---------AASMVSIPGMNGDVRS 697
+ T K + ++ +G DR ++ + G V S
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355
Query: 698 LADVK--------PRITEESNDKS-KVWKLTEL 721
+A S D ++WK ++
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.7 bits (200), Expect = 5e-17
Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 12/141 (8%)
Query: 387 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 444
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504
+ D + G+ ++FS + L + DD VWDA + + GH+ V +
Sbjct: 264 Y-SHDNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Query: 505 HHKENIQFIFSTALDGKIKAW 525
+ + + + D +K W
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.5 bits (189), Expect = 1e-15
Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 9/163 (5%)
Query: 758 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 817
+ + L T SG AS +LW G+ T + E + N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ---TFTGHESDINAICFFPNG 238
Query: 818 SYVMSASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 874
+ + S ++ + T ++F ++ G DD + ++
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297
Query: 875 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
+ + L GH R++ L + + + DS L +W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.8 bits (182), Expect = 8e-15
Identities = 50/332 (15%), Positives = 98/332 (29%), Gaps = 49/332 (14%)
Query: 325 SQAFSTPEDLPKT---VTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER 380
SQ + + + + RTL + +M + LL+ + G + +W+ + +
Sbjct: 31 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK 89
Query: 381 LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 440
+ + + C+ V G+ I++ V SR + Y
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 441 EVRQHLEIDAHVGGVNDIAFSHPNKQLCV---------------------ITCGDDKTIK 479
+I G + Q ++ D + K
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 480 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 539
+WD G + F GHE+ + ++C N + + D + + + Y
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMTYSHD 267
Query: 540 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 599
C + V F + LA DDF+ WD +
Sbjct: 268 NIICGITS-------------------VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 600 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
+ + DG +A + D+ +KI
Sbjct: 309 AGHDNRVSC--LGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.3 bits (160), Expect = 4e-12
Identities = 20/158 (12%), Positives = 49/158 (31%), Gaps = 9/158 (5%)
Query: 854 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 913
D + G D+S ++++VR + GH I + F N + D+
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 914 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET-QLAIFETTKLEC 972
++ ++ T V F + L ++ +++ K +
Sbjct: 251 RLFDLRADQELMTYSHDNIICGI------TSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 973 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1010
++ + D V D+ + +++
Sbjct: 305 AGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.4 bits (142), Expect = 8e-10
Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 26/181 (14%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
V + +PD LF +++ G + H +N I F
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAF- 241
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
T DD T +++D + + ++ + + + D W
Sbjct: 242 -ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
+ + + DG D +K W
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDG---------------------MAVATGSWDSFLKIW 339
Query: 589 D 589
+
Sbjct: 340 N 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.0 bits (180), Expect = 1e-14
Identities = 41/307 (13%), Positives = 101/307 (32%), Gaps = 14/307 (4%)
Query: 611 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 670
+ F+ ++ ++ D IK+ G RT + + S + + +++ +A
Sbjct: 23 VIFHPVFSVMVSASEDATIKVWDYETG-DFERTLK--GHTDSVQDISFDHSGKLLASCSA 79
Query: 671 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 730
+ ++ G + +V S++ + S + K K+ E+ ++
Sbjct: 80 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139
Query: 731 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 790
G I + +++ +W E + + V +
Sbjct: 140 TGHREWVRMVR----PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS--- 192
Query: 791 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAA 849
+ + + K +++S S I ++++ T + T +
Sbjct: 193 --WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250
Query: 850 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 909
+ FH I DD ++++++ + L H +T L F +V+
Sbjct: 251 RGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Query: 910 DSQLCVW 916
D + VW
Sbjct: 310 DQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.1 bits (162), Expect = 2e-12
Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 23/209 (11%)
Query: 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 507
+ H V + F + ++ +D TIKVWD G + +GH V + H
Sbjct: 13 LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 508 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--------AYSADGTRTYQGF 559
+ S + K+ + + ++ + S D T
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 560 R-----------KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 608
+ + + +V+ + + +D +++ W + + + + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190
Query: 609 PRIRFNKDGCLLAVSTNDNGIKILATSDG 637
I + + ++S + G
Sbjct: 191 --ISWAPESSYSSISEATGSETKKSGKPG 217
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.5 bits (132), Expect = 1e-08
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
V V++ G ++++ Y ++ ++AH V + F +
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFHKTAPYV- 304
Query: 469 VITCGDDKTIKVWD 482
+T D+T+KVW+
Sbjct: 305 -VTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.0 bits (128), Expect = 4e-08
Identities = 47/241 (19%), Positives = 76/241 (31%), Gaps = 17/241 (7%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
V RVI+ P S+ A ++++ Y GD R + H V DI+F H K L
Sbjct: 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLA 75
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
+ + + + H S+ P+ I S + D IK W
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG----DHIVSASRDKTIKMWEVQ 131
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSI 585
+ W + + DGT +++ V T + + I
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 586 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 645
+ S ++ S + K G L + D IK+ S G L T
Sbjct: 192 SWAPESSYSSISEAT------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLV 244
Query: 646 N 646
Sbjct: 245 G 245
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.6 bits (127), Expect = 6e-08
Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 20/137 (14%)
Query: 809 PCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQ---------- 857
+++ + + S S + ++ + T + A +++ P+
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 858 ---------DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 908
+ G D +I++++V L GH + G+ F ++S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266
Query: 909 ADSQLCVWSSDGWEKQK 925
D L VW K
Sbjct: 267 DDKTLRVWDYKNKRCMK 283
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (105), Expect = 3e-05
Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 10/172 (5%)
Query: 850 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 909
T + FHP +++ +D++I++++ + + LKGH+ + ++F H+ +L S A
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79
Query: 910 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 969
D + +W G+E + + + + + + + E Q
Sbjct: 80 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-------- 131
Query: 970 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021
+ + D L+ +C D TV V+ A + + +
Sbjct: 132 -TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 9/161 (5%)
Query: 882 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 941
K L GH +T + F +V+VS+ D+ + VW + F + G T + Q
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-----TGDFERTLKGHTDSVQD 64
Query: 942 DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1001
+ + +L F+ ++ + + + +
Sbjct: 65 ISFDHSGKLLASCSADMTIKLWDFQG----FECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 1002 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1042
D T+ ++ V + L+ +
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.9 bits (169), Expect = 4e-13
Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 6/178 (3%)
Query: 850 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSS 907
+ A++ D IAI ++ + IY ++ +LK H+ ++TG+ ++ N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 908 GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 967
G D VW+ G + + + + + FE
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS---RVISICYFEQ 126
Query: 968 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1025
V + + + + + + +S L+ A D +FSA ++ R P+ +
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.0 bits (159), Expect = 9e-12
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 3/155 (1%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
++ W+ D + + + H V IY G V+ H E+ H G V + ++ + ++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNRI- 66
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
+TCG D+ VW + + C N + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563
+ + + S D S
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.3 bits (113), Expect = 4e-06
Identities = 22/368 (5%), Positives = 77/368 (20%), Gaps = 26/368 (7%)
Query: 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626
++ + + ++ + ++ + + + + + D + D
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72
Query: 627 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 686
+ A+R + + + + V
Sbjct: 73 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132
Query: 687 SIPGMNGDVRSLADVKPRITEE------SNDKSKVWKLTELSEPNQCRSLRLPENLRATK 740
++ + + K +++ + +
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP-FG 191
Query: 741 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800
++S + + +A W + L + + +
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV----------CLADADKKMAVATLAS 241
Query: 801 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 860
++ P + S V + LF + +F +
Sbjct: 242 ETLP---LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTA 297
Query: 861 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH----ALNVLVSSGADSQLCVW 916
D H ++ ++ + ++G D + +W
Sbjct: 298 RERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356
Query: 917 SSDGWEKQ 924
E
Sbjct: 357 DVRSLESA 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.5 bits (111), Expect = 6e-06
Identities = 32/247 (12%), Positives = 65/247 (26%), Gaps = 27/247 (10%)
Query: 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 407
+ LL G+ ++ +E W L G
Sbjct: 143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 202
Query: 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 467
V+ V +S +GS V + V + + + F +
Sbjct: 203 -WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL---ASETLPLLAVTFITESS-- 256
Query: 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527
++ G D ++ + A + F G + LD K +
Sbjct: 257 -LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS--SQRGLTARERFQNLDKKASSEGS 313
Query: 528 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 587
G+ +D + ++ + G ++F G D +
Sbjct: 314 AAAGAGLD-SLHKNSVSQISVLSGG-----------------KAKCSQFCTTGMDGGMSI 355
Query: 588 WDMDSVQ 594
WD+ S++
Sbjct: 356 WDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 439 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLC--VITCGDDKTIKVWDATNGAKQ 489
G H V+ I+ K C T G D + +WD +
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (152), Expect = 5e-11
Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 20/197 (10%)
Query: 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 507
+ H V ++ ++ DD T+KVW A G GH V+S
Sbjct: 12 LKGHDDHVIT-CLQFCGNRI--VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68
Query: 508 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------R 554
I L G+ +
Sbjct: 69 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128
Query: 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 614
V R ++ DF +K WD ++ L ++ +
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH----TNRVYSLQ 184
Query: 615 KDGCLLAVSTNDNGIKI 631
DG + + D I++
Sbjct: 185 FDGIHVVSGSLDTSIRV 201
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 6e-10
Identities = 44/321 (13%), Positives = 93/321 (28%), Gaps = 44/321 (13%)
Query: 314 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 373
+ GH+ SQ T + T + ++ + +
Sbjct: 52 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111
Query: 374 EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 433
L + + + M AA+ V + D + V +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK-VWDPETETCL 170
Query: 434 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 493
++ G L+ D V++ D +I+VWD G +
Sbjct: 171 HTLQGHTNRVYSLQFDGI----------------HVVSGSLDTSIRVWDVETGNCIHTLT 214
Query: 494 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 553
GH++ + + S D +K W + P + + +
Sbjct: 215 GHQSLTSGMELKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC----- 265
Query: 554 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQLLTSIDADGGLPASPR 610
KN + + DD ++K WD+ + ++ L ++++ G R
Sbjct: 266 ---------------LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310
Query: 611 IRFNKDGCLLAVSTNDNGIKI 631
IR + + AV + + +
Sbjct: 311 IRASNTKLVCAVGSRNGTEET 331
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 18/152 (11%)
Query: 384 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 443
+ +VWD+ + + G ++ + V+I+ G ++
Sbjct: 197 TSIRVWDVETGNC-----IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 251
Query: 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-----EGHEAP 498
+ H V + F+ VIT DD T+K+WD G G
Sbjct: 252 TLQGPNKHQSAVTCLQFNKN----FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 499 VYSVCPHHKENIQFIFSTALDG--KIKAWLYD 528
V+ + + + +G + K + D
Sbjct: 308 VWRIRASN--TKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 17/129 (13%), Positives = 47/129 (36%), Gaps = 10/129 (7%)
Query: 800 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 859
T + + L ++ V + + ++++ T + + T P + + +
Sbjct: 212 TLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270
Query: 860 NIIAIGMDDSSIQIYNVRVDEVKSKLK-----GHSKRITGLAFSHALNVLVSSGAD---- 910
N + DD ++++++++ E L G + + S+ V +
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330
Query: 911 SQLCVWSSD 919
++L V D
Sbjct: 331 TKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 7e-04
Identities = 25/210 (11%), Positives = 57/210 (27%), Gaps = 29/210 (13%)
Query: 853 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 912
N I G DD+++++++ + L GH+ + D+
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-----------DNI 69
Query: 913 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 972
+ S+D K N S R ++ + L +++ +C
Sbjct: 70 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129
Query: 973 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1032
+ + ++ V + D V V+ +
Sbjct: 130 LHVLMGHVAAVRCVQYDGRR----VVSGAYDFMVKVWDPETETCLHTLQG---------- 175
Query: 1033 SNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1062
H + + + G D + V+
Sbjct: 176 ---HTNRVYSLQFDGIHVVSGSLDTSIRVW 202
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.6 bits (145), Expect = 5e-10
Identities = 25/205 (12%), Positives = 55/205 (26%), Gaps = 26/205 (12%)
Query: 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-----------GHEA 497
AH + ++ + ++C D +KVWD + + H
Sbjct: 11 KAHDADIFSVSACNSF----TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 557
V + + +T+ G + + D + +D +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITRE----DETKKVIFEKLDLLDSDMKKH-- 120
Query: 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-----DSVQLLTSIDADGGLPASPRIR 612
F G +R +A + W +S L + L +
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180
Query: 613 FNKDGCLLAVSTNDNGIKILATSDG 637
+V ++ G+ ++G
Sbjct: 181 MTPSQFATSVDISERGLIATGFNNG 205
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 4e-07
Identities = 52/447 (11%), Positives = 115/447 (25%), Gaps = 68/447 (15%)
Query: 488 KQYI-----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 542
K +I + H+A ++SV + F S + DG +K W L + +
Sbjct: 1 KVFIATANAGKAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH 56
Query: 543 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSV-QLLTSID 600
L ++ D + +A + F+ + + I
Sbjct: 57 F---------VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF 107
Query: 601 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT--SDGIRLLRTFENLAYDASRTSENS 658
L S + + S + L G + F A +++ + N
Sbjct: 108 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167
Query: 659 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA-DVKPRITEESNDKSKVWK 717
PT+ + ++ S + S+ + I N+ +
Sbjct: 168 SPTL-----------------ELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQIS 210
Query: 718 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 777
P + + I + F+ G+ + + TE
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270
Query: 778 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK 837
+ + ++ V ++ + GK+ +++ T +
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVM--------SLSFNDSGETLCSAGWDGKLRFWDVKTKE 322
Query: 838 TMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 893
+ T LA +++ G+ D +K K
Sbjct: 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD----------------VKFLKKGWR 366
Query: 894 GLAFSHALNVLVSSGADSQLCVWSSDG 920
+ L D + + G
Sbjct: 367 SGMGADLNESLCCVCLDRSIRWFREAG 393
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 1e-06
Identities = 25/189 (13%), Positives = 54/189 (28%), Gaps = 4/189 (2%)
Query: 315 FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 374
S+S + +S +L TV + S+D + L+ G N G + + E
Sbjct: 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISE 211
Query: 375 VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 434
+ + L + + + + + G +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271
Query: 435 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 494
+ L AH V ++F+ + + + G D ++ WD +
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNM 329
Query: 495 HEAPVYSVC 503
H +
Sbjct: 330 HCDDIEIEE 338
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 42/402 (10%), Positives = 100/402 (24%), Gaps = 42/402 (10%)
Query: 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 624
+ + ++ D +K WD + D + + L A+
Sbjct: 16 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIER 74
Query: 625 NDNGIKILATS--DG-IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 681
+ + ++AT+ G + R + + A A
Sbjct: 75 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134
Query: 682 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741
+ + + G + S + E + + AT +
Sbjct: 135 LSHRLVATDVKGTTY----IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190
Query: 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801
S ++A N + T R S I +N +
Sbjct: 191 DI-----SERGLIATGFNNGTVQISELSTLRPL---------YNFESQHSMINNSNSIRS 236
Query: 802 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMM--------TFKTMATFMPPPPAATFLA 853
A++ + + + + + + + L+
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296
Query: 854 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI----TGLAFSHALNVLVSSGA 909
F+ + D ++ ++V+ E + L H I LA + L G
Sbjct: 297 FNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354
Query: 910 DSQLCVWSSDGWEKQKNRFLQIPTGRT-PTAQSDTRVQFHQD 950
V+ +K + + D +++ ++
Sbjct: 355 -----VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 4e-04
Identities = 14/154 (9%), Positives = 39/154 (25%), Gaps = 20/154 (12%)
Query: 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-- 508
HV + I L T + + T + + +
Sbjct: 65 HVDVLQAIERDAFELCLVA-TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123
Query: 509 -----------NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 557
+ +T + G W + + + + + T +
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA-----DESNSLTLNWSPTLELQGTVE 178
Query: 558 GFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDM 590
S D ++ +A G ++ +++ ++
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISEL 212
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.9 bits (143), Expect = 7e-10
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVYSVCPHHKEN 509
H ++ I + + + + G + +++ +G ++SV K
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 510 IQFIFSTALDGKIKAWLYD 528
+ + DG+ + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 5e-08
Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 25/178 (14%)
Query: 442 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 501
V Q + H+ V N VIT DDK I+V+D+ N GH+ V++
Sbjct: 2 VPQRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58
Query: 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561
+ H + S GS
Sbjct: 59 LKYAHG---GILVS---------------GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100
Query: 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 619
+ + D ++ W + + + P +
Sbjct: 101 D----IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 7e-07
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 831 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHS 889
F + + +NI+ G ++ IYN+R + V + + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVHANILKDA 324
Query: 890 KRITGLAFSHALNVLVSSGADSQLCVWSSD 919
+I + F ++ + D Q + D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 6/150 (4%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
++N + G DD I++Y+ + +L GH + L ++H +LVS D + VW
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 977
T R ++ + + L +++ K V
Sbjct: 81 IKKGCCTHVFEGHNSTVRCLDIV-----EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135
Query: 978 PRESSAPITHATFSCDSQLVYACFLDATVC 1007
+ H + A+V
Sbjct: 136 EEHDYPLVFHTPEENPYFVGVLRGHMASVR 165
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (137), Expect = 2e-09
Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 22/206 (10%)
Query: 443 RQHLE-IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 501
R L+ I + + Q +++ D TIK+WD + I GH V
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60
Query: 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR------- 554
+ + I + + EA ++
Sbjct: 61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120
Query: 555 ---------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 605
+ V D ++A D +IK W+ + + + +++
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-- 178
Query: 606 PASPRIRFNKDGCLLAVSTNDNGIKI 631
L+ ++DN I++
Sbjct: 179 --RGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 454 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 513
G + V++ D TI++WD GA + EGH + + + + I
Sbjct: 176 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRI 231
Query: 514 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573
S A DGKIK W D + + G C RT R + QFD +
Sbjct: 232 VSGAYDGKIKVW--DLVAALDPRAPAGTLCL---------RTLVEHSGRVFRL-QFD--E 277
Query: 574 NRFLAAGDDFSIKFWD 589
+ +++ D +I WD
Sbjct: 278 FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 15/131 (11%)
Query: 796 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAF 854
T + + L D V+S S I L+++ + +
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRC 223
Query: 855 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSK---------LKGHSKRITGLAFSHALNVLV 905
DN I G D I+++++ L HS R+ L F +V
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIV 281
Query: 906 SSGADSQLCVW 916
SS D + +W
Sbjct: 282 SSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 15/102 (14%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD+ + L G D ++++ + R
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255
Query: 447 E------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482
+ H G V + F + +++ D TI +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.004
Identities = 28/206 (13%), Positives = 63/206 (30%), Gaps = 25/206 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+ I G+ D++I+I++ E K L GH+ + L + + + S
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII-----------TGS 72
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 977
SD + + + + + +A+++ +
Sbjct: 73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132
Query: 978 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1037
D + + + D T+ V++ + + V + N H
Sbjct: 133 VLVGH-RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-------------VRTLNGHK 178
Query: 1038 LVIAAHPQEPNEFALGLSDGGVHVFE 1063
IA G SD + +++
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWD 204
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 3e-09
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+ + + P G V V++ + ++ H V + F++ K
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVN----KPDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525
++ G D + W GA + + V S + ++I + + D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 8/131 (6%), Positives = 24/131 (18%), Gaps = 2/131 (1%)
Query: 787 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP 846
+ + + + ++ +
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE 265
Query: 847 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 906
L F D+ + + + S + S +V+
Sbjct: 266 SCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT 323
Query: 907 SGADSQLCVWS 917
D + V+
Sbjct: 324 GSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 31/314 (9%), Positives = 77/314 (24%), Gaps = 49/314 (15%)
Query: 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--GACSMP 397
TLN G ++ + + G + KVWD+ P
Sbjct: 46 NTLNHGEVVCAVTISNPTRHVY-------------TGGK-----GCVKVWDISHPGNKSP 87
Query: 398 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND 457
+ + + PDG V + I+ + +
Sbjct: 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147
Query: 458 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 517
+ G+ + + + + + + C + +++
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 518 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV----------- 566
LD +++W ++ ++ Y G G ++ V
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261
Query: 567 ---------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 617
++F F++ G D + W + + + + D
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS---CDISVDD 318
Query: 618 CLLAVSTNDNGIKI 631
+ + D +
Sbjct: 319 KYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 5e-07
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 413 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 472
+ ++ G F +++ + G + Q V S +K + +T
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYI--VTG 324
Query: 473 GDDKTIKVWD 482
DK V++
Sbjct: 325 SGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.004
Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 27/139 (19%)
Query: 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 510
+ + + + L V + N +Y HE+ V S+ +
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGME---SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK- 278
Query: 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570
+ ST D + AW G+ + + S D
Sbjct: 279 -WFVSTGKDNLLNAWRTPY-GASIFQSKESSSVLSCDISVDD------------------ 318
Query: 571 TTKNRFLAAGDDFSIKFWD 589
+ D ++
Sbjct: 319 ---KYIVTGSGDKKATVYE 334
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.5 bits (134), Expect = 5e-09
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 6/101 (5%)
Query: 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKEN 509
H + ++ S K L + + I WD + G +F + H + + K +
Sbjct: 11 HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 510 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 550
+ + D +K G + + A
Sbjct: 69 LFTVSW---DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 2e-04
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 415 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474
WSPD + V +++ + + ++ + VN + + + +++ G
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQ 288
Query: 475 DKTIKVWD 482
D IK W+
Sbjct: 289 DSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 2e-04
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 462 HPNKQLCVITCGDDKTIKVWDATNGAKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALD 519
+ + T D ++ VW+ + I H + E I S D
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQD 289
Query: 520 GKIKAW 525
IK W
Sbjct: 290 SNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 2e-04
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 925
+ GH+K IT L+ S L S+ A+ + W +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 48
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.4 bits (92), Expect = 8e-04
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 2/92 (2%)
Query: 828 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-- 885
A DN +A G D+S+ ++N+ +
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 886 KGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
H+ +VS+G DS + W+
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 29/329 (8%), Positives = 83/329 (25%), Gaps = 73/329 (22%)
Query: 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 409
+ P + LL + S + + V+ + +
Sbjct: 16 DIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYKHP 58
Query: 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI--------------------- 448
+ + + L + + G Q L
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 449 ------------------------DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 484
+++ V + F+ +I ++ ++ +
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 485 NGAKQYIFEGHEAPVYSVCPH--HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 542
Y + + + +++DG++ +D+ G + +
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN---SSKR 235
Query: 543 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 602
+ + T + S ++F AG D I W++ + + + +
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNS---IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-- 290
Query: 603 GGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
++ +L ++T+D+ K
Sbjct: 291 -KFNEDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 7e-08
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 444 QHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE---GHEAPV 499
Q ++I A ++DI L + D ++ V+ AK ++ P+
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLL--LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 500 YSVCPHHKENIQFIFST 516
++Q T
Sbjct: 60 LCCNFIDNTDLQIYVGT 76
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 5e-07
Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 19/129 (14%)
Query: 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV------------RQHLEIDAHVGGVND 457
+ + + + + V + + + R +L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 458 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFST 516
I FS +K L T G D I W+ K F +E V + +
Sbjct: 257 IEFSPRHKFLY--TAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 517 ALDGKIKAW 525
D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 31/263 (11%), Positives = 75/263 (28%), Gaps = 19/263 (7%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
++ + P SL + + +Y + + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ- 71
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
I G + + G+ + + +C K + + + DG I+
Sbjct: 72 -IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
N G V T + T +R + ++ ++++
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNS---------------SRLIVGMNNSQVQWF 175
Query: 589 DMDSVQLLTSIDADGGLPASPRIR--FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 646
+ + + GL R K+ A S+ D + + D + +
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235
Query: 647 LAYDASRTSENSKPTISPISAAA 669
A+ R + P+++
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIE 258
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 54.0 bits (128), Expect = 4e-08
Identities = 39/376 (10%), Positives = 76/376 (20%), Gaps = 37/376 (9%)
Query: 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTN 625
+ ++ D+ S + S P D V N
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNN 59
Query: 626 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 685
G D + + ISP A + +
Sbjct: 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119
Query: 686 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 745
+ KP T + +
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLM----------------------------R 151
Query: 746 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 805
+ G+ +A + + T + S
Sbjct: 152 AADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML- 210
Query: 806 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 865
+ ++ T KT F +
Sbjct: 211 -YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY- 268
Query: 866 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 925
+ + Y+++ ++ +AF + L G + L V++ D EK K
Sbjct: 269 GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327
Query: 926 NRFLQIPTGRTPTAQS 941
N +++P G T
Sbjct: 328 N--IKLPGGDMSTTTP 341
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 52.0 bits (123), Expect = 2e-07
Identities = 30/305 (9%), Positives = 68/305 (22%), Gaps = 20/305 (6%)
Query: 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPL 398
+ + P + P +T ++ + GDI ++ + + N
Sbjct: 33 SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92
Query: 399 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDI 458
A+ P +P L + + + V +
Sbjct: 93 SFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150
Query: 459 AFSHPNKQLC------VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 512
+ + K N ++ + E
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210
Query: 513 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572
+ +L T AD T Y +
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY---------FTGLRSP 261
Query: 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 632
K+ G + +D+ +L+ + + + F+K G L + N + +
Sbjct: 262 KDPNQIYGVLNRLAKYDLKQRKLIKAANL-DHTYYC--VAFDKKGDKLYLGGTFNDLAVF 318
Query: 633 ATSDG 637
Sbjct: 319 NPDTL 323
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.4 bits (111), Expect = 5e-06
Identities = 28/278 (10%), Positives = 64/278 (23%), Gaps = 49/278 (17%)
Query: 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK 404
G S S P + N + + +V+
Sbjct: 88 GRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRL----EVFSTADGLEAKPVRTFP 142
Query: 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS------YHGGDEVRQ-----------HLE 447
P V + + DGSL+ + + + + + R+ +
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHH 506
H + + + T D T F ++
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261
Query: 507 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566
K+ Q ++ + + +A+ G + Y
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLY---------- 307
Query: 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604
G + ++ D+++ + +I GG
Sbjct: 308 -----------LGGTFNDLAVFNPDTLEKVKNIKLPGG 334
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 7e-04
Identities = 17/190 (8%), Positives = 42/190 (22%), Gaps = 20/190 (10%)
Query: 308 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV 367
V ++ + G + + T L + P +
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVKTG--KYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 204
Query: 368 GDIGLWEVGSRERLVLRNF---------KVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418
+ + +R + ++ DL Q + D
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY-FTGLRSPKD 263
Query: 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478
+ + + + Y ++ +AF +L G +
Sbjct: 264 PNQ--IYGVLNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKL--YLGGTFNDL 315
Query: 479 KVWDATNGAK 488
V++ K
Sbjct: 316 AVFNPDTLEK 325
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.2 bits (87), Expect = 0.004
Identities = 22/193 (11%), Positives = 42/193 (21%), Gaps = 20/193 (10%)
Query: 458 IAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFST 516
A ++ + I + V D + + + + ++
Sbjct: 2 PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58
Query: 517 ALDGKIKAW------LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570
G I + GR + A S DG Y
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---------ATVNP 109
Query: 571 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 630
T + ++ + + +R DG L V+ D
Sbjct: 110 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLYVAGPDIYKM 168
Query: 631 ILATSDGIRLLRT 643
+ T L
Sbjct: 169 DVKTGKYTVALPL 181
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 9e-08
Identities = 37/322 (11%), Positives = 82/322 (25%), Gaps = 53/322 (16%)
Query: 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 405
+ + + P + + +R D G +P
Sbjct: 18 NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61
Query: 406 PGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYHGGDEVRQHL-----EIDAHVGGVNDI 458
V V +SP V ++ + E E G ++DI
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 459 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 518
++ ++LCV+ G D +G GH + + ++ +
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 519 DGKIKAWLYDNLGSRVDYEAPG--RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK--- 573
+ S D + + +S D +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 574 ----------------------NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 611
+F G D +I+ WD+ + + + D + ++
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301
Query: 612 RF--NKDGCLLAVSTNDNGIKI 631
+G ++++S D +
Sbjct: 302 GVVATGNGRIISLS-LDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 7e-06
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 468 CVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525
T G D TI+VWD T +++ + + V N I S +LDG + +
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.9 bits (104), Expect = 3e-05
Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 10/131 (7%)
Query: 838 TMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGH-S 889
++ +PP P+ T L++ P N I + ++ + +V + GH S
Sbjct: 4 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63
Query: 890 KRITGLAFSHALN--VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 947
+T + FS L S ++ VW ++ + + + + A + + +
Sbjct: 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123
Query: 948 HQDQIHFLVVH 958
+ VV
Sbjct: 124 DFEGRRLCVVG 134
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 46/327 (14%), Positives = 82/327 (25%), Gaps = 40/327 (12%)
Query: 276 PTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPED-- 333
PT ++ YP G S + R + D PV V FTGH S + FS +
Sbjct: 27 PTTNAIAYPCGKSAFV----RCLDDGDSKVPPV----VQFTGHGSSVVTTVKFSPIKGSQ 78
Query: 334 ------LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRN 385
V + V+ ++ + DI G R R+
Sbjct: 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138
Query: 386 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 445
+ S + + V Y
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198
Query: 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 505
V D+ FS + + + D K + +YI + E +
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258
Query: 506 HKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563
+ Q + D I+ W + + + A G
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG----------- 307
Query: 564 LGVVQFDTTKNRFLAAGDDFSIKFWDM 590
R ++ D ++ F+++
Sbjct: 308 ---------NGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 7e-04
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Query: 831 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 890
F P A D+ A D++I++++V + K +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 891 RITGLAFSHAL---NVLVSSGADSQLCVW 916
++ ++S D L +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFY 323
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 29/299 (9%), Positives = 74/299 (24%), Gaps = 24/299 (8%)
Query: 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 396
T+T+ ++ M P ++ L + + + + + + +
Sbjct: 28 TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA------- 80
Query: 397 PLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVN 456
S+ + G V + +++ + G +
Sbjct: 81 ---------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH 131
Query: 457 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST 516
S N+ L V D+ + +G V P H +F
Sbjct: 132 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH-----MVFHP 186
Query: 517 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576
++ + + P + + R + + D ++ +
Sbjct: 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD-GRHLY 245
Query: 577 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVS-TNDNGIKILA 633
I + + + S + PR + G L + + I +
Sbjct: 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 51.5 bits (122), Expect = 3e-07
Identities = 52/396 (13%), Positives = 111/396 (28%), Gaps = 41/396 (10%)
Query: 570 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 629
D + D I D DS +++ ID G R + G L V D I
Sbjct: 29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHI--SRMSASGRYLLVIGRDARI 85
Query: 630 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL-----ADRAAS 684
++ + E +R+ E+ A A +
Sbjct: 86 DMIDLWAK-EPTKVAEIKIGIEARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143
Query: 685 MVSIPGMNGDVRSLA---DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741
+ V + + + S++ + + + + + +NL T I
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203
Query: 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801
F G S+ + + + + + + L
Sbjct: 204 GAAPFLADG----GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 259
Query: 802 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 861
+P+ D + S G +K +A + F+ HP+ +++
Sbjct: 260 VHPKYGPVWSTSHLGDGSI-SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL 318
Query: 862 IAI------GMDDSSIQIYNVRVDEVKSKLKGHS---------KRITGLAFSHA-----L 901
S+ +++++ + K ++ + KR+ ++
Sbjct: 319 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF 378
Query: 902 NVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTG 934
+V S L V + + K+ L PTG
Sbjct: 379 SVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTG 414
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 44.6 bits (104), Expect = 5e-05
Identities = 26/276 (9%), Positives = 70/276 (25%), Gaps = 34/276 (12%)
Query: 332 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV-GTNVGDIGLWEVGSRERLVLRNFKVWD 390
++ ++ + P L V + G I L + S++ +++
Sbjct: 5 PEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDT-- 60
Query: 391 LGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--DEVRQHLEI 448
G +V+ S G V + + +V +
Sbjct: 61 ----------------GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104
Query: 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 508
+ + + + D + I V + H +
Sbjct: 105 IEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163
Query: 509 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568
+ I ++ + + + G + T+ G
Sbjct: 164 RVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGG--------- 213
Query: 569 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604
+D++ F+ A ++ + + L+++ G
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (119), Expect = 4e-07
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 438 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 497
G DEV + + H G+ + + +I+ D I W +++ + H
Sbjct: 1 GHDEVLKTIS--GHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSN 47
Query: 498 PVYSVCPHHKENIQFIFS 515
+ S+ + I
Sbjct: 48 LIVSLDNSKAQEYSSISW 65
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (119), Expect = 4e-07
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 831 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS 889
+ + PA + +++A G D++I IY+V+ ++ L H
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 890 KRITGLAFSHALNVLVSSGADSQLCVWS 917
+ L + + LVSSGAD+ + W+
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (106), Expect = 1e-05
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 413 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 472
+ L + IYS ++ + L AH GVN++ + P+ +++
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275
Query: 473 GDDKTIKVWD 482
G D IK W+
Sbjct: 276 GADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.001
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 923
DEV + GH+K IT L + L+S D ++ WSS +
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.6 bits (119), Expect = 6e-07
Identities = 33/333 (9%), Positives = 88/333 (26%), Gaps = 14/333 (4%)
Query: 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKI 631
++ LA + D + + + I P G + + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM 691
+ G L R + + ++ + + + A + L +
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
Query: 692 NGDVRSLADVKPRITEE-----SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 746
+ + S + + D SK++ L + L E+ +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180
Query: 747 TNSGNAILALASNAIHLLWKW---QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 803
+ + ++ R + + + +G M +V +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240
Query: 804 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 863
+K ++ + F++ ++ P P + + D + +
Sbjct: 241 VFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRV-PLPHSYYSVNVST-DGSTVW 295
Query: 864 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 896
+G + Y+ E K ++ LA
Sbjct: 296 LGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 4e-04
Identities = 29/291 (9%), Positives = 71/291 (24%), Gaps = 38/291 (13%)
Query: 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK----VWDLG 392
++ + S P +TL + + V R+ L + +
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 393 ACSMPLQAALVKDPG---VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 449
A A +D + + V + +V
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 450 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHKE 508
G + ++ + D G + +S + +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 509 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568
F ++++ + + + ++ S DG+ +
Sbjct: 253 TRAFGA----YNVLESFDLEK-NASIKRVPLPHSYYSVNVSTDGSTVW------------ 295
Query: 569 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKD 616
G + +D ++++ +D G AS R+ F +D
Sbjct: 296 ---------LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRL-FTRD 336
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (92), Expect = 0.001
Identities = 21/299 (7%), Positives = 69/299 (23%), Gaps = 49/299 (16%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR-HIVQIYSYHGGDEVRQH 445
V D ++ + + D G + + +P G + ++ + G+ + +
Sbjct: 14 VVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72
Query: 446 LEIDAHVGGVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504
+ + P+ + I + + +++
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 505 HHKENIQFIFST-----ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY--- 556
++ ++ G+ + G+ V+ + W D +
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS------------------ 598
+ + + + D+++ ++
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 599 ------------IDADGG-------LPASPR-IRFNKDGCLLAVSTNDNGIKILATSDG 637
D + LP S + + DG + + +
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.004
Identities = 15/174 (8%), Positives = 47/174 (27%), Gaps = 9/174 (5%)
Query: 318 HSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS 377
S + + + T+ S P + + G + +
Sbjct: 146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205
Query: 378 RERLVLRNFKVWDLGACSMPLQAALVK---DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 434
R+ + + + G +M L+ + + V + + + + ++++ +
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265
Query: 435 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488
+++ + S + G + +DA K
Sbjct: 266 DLEKNASIKRVP----LPHSYYSVNVSTDGSTV--WLGGALGDLAAYDAETLEK 313
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 14/152 (9%), Positives = 37/152 (24%), Gaps = 12/152 (7%)
Query: 336 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 395
+ + S P + P + V E G + +
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDPG 264
Query: 396 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 455
++ + + + + + A + ++ Y ++ +
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNL 317
Query: 456 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 487
D+ S K + + DD I +
Sbjct: 318 TDLRLSADRKTV--MVRKDDGKIYTFPLEKPE 347
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 46.8 bits (109), Expect = 9e-06
Identities = 23/332 (6%), Positives = 62/332 (18%), Gaps = 42/332 (12%)
Query: 333 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDL 391
D+ T + + + + + GT GD +G+++ + +
Sbjct: 30 DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89
Query: 392 GA----------------------CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 429
+ + + S + +
Sbjct: 90 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149
Query: 430 IVQIYSYHGGDEVRQHLEIDAHVGG----VNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485
+ Y +E +D A + + D
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209
Query: 486 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 545
+ + + + N +
Sbjct: 210 LNFSFE---VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY 266
Query: 546 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 605
+ V + A + + +D+ + ++ + L
Sbjct: 267 RMIIPLESSIL------IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320
Query: 606 PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637
S D + V +D I
Sbjct: 321 RLSA------DRKTVMVRKDDGKIYTFPLEKP 346
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 20/178 (11%), Positives = 38/178 (21%), Gaps = 5/178 (2%)
Query: 847 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 906
P+ F P D ++IA Q + V RI + V
Sbjct: 3 PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59
Query: 907 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 966
G + D + +F + F ++
Sbjct: 60 HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119
Query: 967 TTKLECVKQWV--PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1022
T + + S A ++ + V+ K+
Sbjct: 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 177
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 31/353 (8%), Positives = 78/353 (22%), Gaps = 20/353 (5%)
Query: 575 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG--IKIL 632
+A D+ +L + R D + + G + I
Sbjct: 16 DLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIY 71
Query: 633 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 692
G A N K + + V
Sbjct: 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL----ETGKPTVIERSRE 127
Query: 693 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 752
+ K ++ KI NS +
Sbjct: 128 AMITDFTISDNSRFIAYGFPLKHG-----ETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182
Query: 753 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 812
A +++ +L + R+ S + + + ++ P I + + +
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242
Query: 813 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 872
+ + ++ + + + +
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLL 301
Query: 873 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 925
Y+V+ K+ +T L S ++ D ++ + + E ++
Sbjct: 302 KYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.8 bits (96), Expect = 4e-04
Identities = 28/259 (10%), Positives = 60/259 (23%), Gaps = 24/259 (9%)
Query: 415 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 473
+SP DG L SR I G ++ + + K +
Sbjct: 10 FSPLDGDLIAFV-SRGQAFIQDVSGTYVLKV-----PEPLRIRYVRRGGDTKVAFIHGTR 63
Query: 474 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 533
+ + ++D G K FE + V+++ + + +
Sbjct: 64 EGDFLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122
Query: 534 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 593
T++ ++ K+ +I +DM+
Sbjct: 123 ERSREAMITDFTISDNSRFI-------------AYGFPLKHGETDGYVMQAIHVYDMEGR 169
Query: 594 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 653
+ A F+ D L + +
Sbjct: 170 K---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226
Query: 654 TSENSKPTISPISAAAAAA 672
+ + P S + A
Sbjct: 227 PGSPNPTKLVPRSMTSEAG 245
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 3e-06
Identities = 9/96 (9%), Positives = 21/96 (21%), Gaps = 5/96 (5%)
Query: 453 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 512
G + + P G ++ + I+ H + +
Sbjct: 18 GTAVVLGNT-PAGDKIQYCNGT--SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYY 72
Query: 513 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 548
S + G ++ W + P
Sbjct: 73 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 2/106 (1%)
Query: 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 908
A L P + I S + V HS + T S + S
Sbjct: 20 AVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 909 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 954
+ +W + + + +G D+ +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.8 bits (109), Expect = 7e-06
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 468 CVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKA 524
+ + DKTIK+W+ + E + Q + S + +G I
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINF 307
Query: 525 W 525
Sbjct: 308 V 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 832 NMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK- 890
F+ + + F D IA D +I+I+NV +V+ + ++
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 891 RITGLAFSHALNVLVSSGADSQLCVWSSD 919
L LVS A+ + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 31/275 (11%), Positives = 69/275 (25%), Gaps = 32/275 (11%)
Query: 384 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 443
+ + + + SP G V+I+ +
Sbjct: 38 TSVYTVPV---GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94
Query: 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503
+ I G V DI++ +K++ + G ++ V+ G G + SV
Sbjct: 95 KT-TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153
Query: 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563
+ I + + E + G
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213
Query: 564 LGVVQFDTTK---------------------------NRFLAAGDDFSIKFWDMDSVQLL 596
+ D TK + +A D +IK W++ ++++
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273
Query: 597 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
+I + ++ L + + I
Sbjct: 274 KTIPVGTRIE-DQQLGIIWTKQALVSISANGFINF 307
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 48.6 bits (115), Expect = 3e-06
Identities = 29/214 (13%), Positives = 50/214 (23%), Gaps = 16/214 (7%)
Query: 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPN 464
G +V+ S G V V + + V + +
Sbjct: 61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120
Query: 465 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 524
K + D + I H + + I ++ +
Sbjct: 121 KYAIA-GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179
Query: 525 WLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL-AAGDD 582
+ + VDY TT + R L D + F+ AA
Sbjct: 180 NVKETGKILLVDYTDLNNLKTTEISAE-----------RFLHDGGLDGSHRYFITAANAR 228
Query: 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 616
+ D +L+ D G P R
Sbjct: 229 NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 262
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.8 bits (105), Expect = 5e-05
Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 23/176 (13%)
Query: 777 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTF 836
+ + V P+ M D+ +N V G+I+L + T+
Sbjct: 8 RESWKVHVAPEDRPTQQMNDWDL---------------ENLFSVTLRDAGQIALIDGSTY 52
Query: 837 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGL 895
+ A + + D + + ++ + E + + +
Sbjct: 53 EIKTVL-DTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110
Query: 896 AFSHALN-----VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 946
S + + Q + + E +K + + T + RV
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 166
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.8 bits (104), Expect = 4e-05
Identities = 31/263 (11%), Positives = 57/263 (21%), Gaps = 33/263 (12%)
Query: 406 PGVSVNRVIWSPDGSLFGVAYSRH----------IVQIYSYHGGDEVRQHLEIDAHVGGV 455
G + + + DGS A + V+++ DA V
Sbjct: 45 DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104
Query: 456 ----NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 511
+ + K L + V D A + + + +
Sbjct: 105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT---- 160
Query: 512 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC------TTMAYSADGTRTYQGFRKRSLG 565
F DG + + G+ AYS R +
Sbjct: 161 -FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH 219
Query: 566 VVQFDTTKNRFLAAGDDFSIKFWD---MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 622
+ + +FL A + + +
Sbjct: 220 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR----IYLLVDQRDEWRH 275
Query: 623 STNDNGIKILATSDGIRLLRTFE 645
T + +L G L FE
Sbjct: 276 KTASRFVVVLDAKTG-ERLAKFE 297
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (103), Expect = 6e-05
Identities = 21/192 (10%), Positives = 44/192 (22%), Gaps = 12/192 (6%)
Query: 309 NVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG 368
+ ++ T + L+ T G
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP-TYTG 216
Query: 369 DIGLWEVGSRERLVLRNFK-----VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423
I ++ S + L + G Q + + +
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY--LLVDQRDEWR 274
Query: 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 483
+ V + G+ + + ++ I S K L DKT+ + DA
Sbjct: 275 HKTASRFVVVLDAKTGERLAKF----EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330
Query: 484 TNGAKQYIFEGH 495
+G +
Sbjct: 331 ESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 4e-04
Identities = 32/241 (13%), Positives = 60/241 (24%), Gaps = 49/241 (20%)
Query: 396 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 455
+ + P + DGSL VA+ ++ +
Sbjct: 145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-------I 197
Query: 456 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFI 513
N A+S +L T I D ++G +++ E + Q
Sbjct: 198 NHPAYSQKAGRLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255
Query: 514 FS----------------TALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTY 556
+ + D G R+ G ++ S D
Sbjct: 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 315
Query: 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 616
+ + D ++ D +S + L S++ G P I
Sbjct: 316 -------------------YALSTGDKTLYIHDAESGEELRSVNQLGHGPQV--ITTADM 354
Query: 617 G 617
G
Sbjct: 355 G 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (94), Expect = 7e-04
Identities = 30/375 (8%), Positives = 79/375 (21%), Gaps = 54/375 (14%)
Query: 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 584
++ D RV G + + DG+ T +R
Sbjct: 31 FVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHA-----------STVFSRIARGERTDY 79
Query: 585 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
++ +D ++ I D V T L
Sbjct: 80 VEVFDPVTLLPTADI-------------ELPDAPRFLVGTYPWMT----------SLTPD 116
Query: 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 704
+ + + A + + D
Sbjct: 117 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----CYHIFPTAPDTFFMHCRDGSLA 171
Query: 705 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 764
+ + TE+ P + P S A + +
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHP-------------AYSQKAGRLVWPTYTGKI 218
Query: 765 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 824
+ + ++ + + + + + D + +
Sbjct: 219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278
Query: 825 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDEVKS 883
+ + + T + +A F + + + A+ D ++ I++ E
Sbjct: 279 SRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 337
Query: 884 KLKGHSKRITGLAFS 898
+ + +
Sbjct: 338 SVNQLGHGPQVITTA 352
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 29/286 (10%), Positives = 65/286 (22%), Gaps = 47/286 (16%)
Query: 336 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV------- 388
VT T+ GS+PM P + + + D+ + + + +
Sbjct: 22 NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81
Query: 389 ---------------WDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 433
+ A G S + SPDG V +
Sbjct: 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 434 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 493
V + + G+ + V +
Sbjct: 142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTV 196
Query: 494 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 553
EA + + + ++ + + + G +A + DG
Sbjct: 197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK 256
Query: 554 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 599
+ Y +A ++ D + + ++
Sbjct: 257 KVY--------------------VALSFCNTVSVIDTATNTITATM 282
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 41.0 bits (94), Expect = 6e-04
Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 4/91 (4%)
Query: 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 467
S V + G +++ + + IA + P+ +
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVT-PDGKK 257
Query: 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498
+ T+ V D + P
Sbjct: 258 VYVALSFCNTVSVIDTATNTITATMAVGKNP 288
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.7 bits (94), Expect = 7e-04
Identities = 7/88 (7%), Positives = 22/88 (25%), Gaps = 4/88 (4%)
Query: 411 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVI 470
+ ++ + + G ++ + I +
Sbjct: 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----ISNGHDSDAIIAAQDGASDNYA 331
Query: 471 TCGDDKTIKVWDATNGAKQYIFEGHEAP 498
+ + ++DA + Q E + P
Sbjct: 332 NSAGTEVLDIYDAASDQDQSSVELDKGP 359
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.6 bits (91), Expect = 0.002
Identities = 17/252 (6%), Positives = 54/252 (21%), Gaps = 27/252 (10%)
Query: 406 PGVSVNRVIWSPDGSLFGVA---YSR-------HIVQIYSYHGGDEVRQ----HLEIDAH 451
G ++ + GS F +A ++R V+++ + +
Sbjct: 63 LGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122
Query: 452 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 511
V+ I + L + + + +
Sbjct: 123 GPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH----PGAAAT 177
Query: 512 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 571
+ + A + + + Q + G++ +
Sbjct: 178 HYLGSC-PASLAASDLAAAPAAA-------GIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229
Query: 572 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
+ + + K+ + + T ++
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289
Query: 632 LATSDGIRLLRT 643
LA ++ +
Sbjct: 290 LAAAENTSSVTA 301
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 39.1 bits (91), Expect = 0.002
Identities = 21/142 (14%), Positives = 37/142 (26%), Gaps = 13/142 (9%)
Query: 795 MTNDVTDSNPEEAVP-CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 853
+ D V A K ++ + + P P L
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYI-PVPKNPHGLN 264
Query: 854 FHPQDNNIIAIGMDDSSIQIYNV-RVDEVKSKLKGHSKRITG----------LAFSHALN 902
P IA G ++ + + ++D++ I F N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324
Query: 903 VLVSSGADSQLCVWSSDGWEKQ 924
+ DSQ+C W+ K
Sbjct: 325 AYTTLFIDSQVCKWNIADAIKH 346
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1101 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.85 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.78 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.74 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.6 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.51 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.51 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.49 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.45 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.29 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.14 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.08 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.02 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.98 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.98 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.98 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.91 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.89 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.88 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.87 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.87 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.85 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.84 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.8 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.7 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.36 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.32 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.3 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.2 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.85 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.84 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.83 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.78 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.75 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.72 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.7 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.56 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.54 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.53 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.5 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.5 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.48 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.43 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.38 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.38 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.29 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.27 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.26 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.15 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.06 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.68 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.9 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.97 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.63 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.26 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.95 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.18 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 93.1 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 91.78 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 90.64 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 89.49 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 89.36 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 86.22 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 85.31 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 82.37 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 82.33 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.8e-36 Score=328.16 Aligned_cols=305 Identities=17% Similarity=0.301 Sum_probs=256.6
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEe
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 526 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd 526 (1101)
+|.||.++|++|+|+|+++ +|+||+.|++|+|||+.+++.+.++.+|...|.+++|+ +++.++++++.++.+.+|+
T Consensus 12 ~L~GH~~~I~~l~~sp~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~--~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD--HSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEEC--TTSSEEEEEETTSCCCEEE
T ss_pred EEcCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeee--ccccccccccccccccccc
Confidence 5889999999999999999 89999999999999999999999999999999999985 5668999999999999999
Q ss_pred cCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 001318 527 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 606 (1101)
Q Consensus 527 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 606 (1101)
.........+..+...+..+.+ +++++.+++++.|+.+++||+.+++.+..+..+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-- 144 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSI---------------------MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-- 144 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEE---------------------CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--
T ss_pred ccccccccccccccccceeeec---------------------cCCCceEEeeccCcceeEeecccceeeeEEccCCC--
Confidence 9887766666666555555554 44556899999999999999999999999886644
Q ss_pred CcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccccc
Q 001318 607 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 686 (1101)
Q Consensus 607 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1101)
.+.+++|++++++|++++.|+.|++|+..++ .....+.
T Consensus 145 ~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~----------------------------------------- 182 (317)
T d1vyhc1 145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELR----------------------------------------- 182 (317)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEEC-----------------------------------------
T ss_pred cceeeecccCCCEEEEEeCCCeEEEEeeccc-eeeEEEe-----------------------------------------
Confidence 6889999999999999999999999998776 3222221
Q ss_pred ccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeee
Q 001318 687 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 687 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
++...+..+.|+|++.........
T Consensus 183 -------------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~------- 206 (317)
T d1vyhc1 183 -------------------------------------------------EHRHVVECISWAPESSYSSISEAT------- 206 (317)
T ss_dssp -------------------------------------------------CCSSCEEEEEECCSCGGGGGGGCC-------
T ss_pred -------------------------------------------------cCCCCceEEEEeeccccceeeccc-------
Confidence 145667788888876533322211
Q ss_pred ccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC
Q 001318 767 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 845 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~ 845 (1101)
.........++.++++++ |+.|++||+.+++++.++.+|
T Consensus 207 ----------------------------------------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 246 (317)
T d1vyhc1 207 ----------------------------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246 (317)
T ss_dssp ----------------------------------------SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ----------------------------------------cceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence 112233345677888888 899999999999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
...|.+++|+| ++++|++|+.||.|+|||+.+++++..+.+|.+.|++++|+|++++|+||+.|++|+|||
T Consensus 247 ~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 247 DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999999 899999999999999999999999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-35 Score=328.00 Aligned_cols=294 Identities=13% Similarity=0.162 Sum_probs=242.3
Q ss_pred cceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEE
Q 001318 336 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 336 ~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 415 (1101)
.+..++++|...|+|++|||+|++ ||+|+ ||.|+|||+.++..... .......+|.+.|.+++|
T Consensus 42 ~~~~~~~~H~~~V~~v~fs~~g~~-latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~ 105 (337)
T d1gxra_ 42 ARQINTLNHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp EEEEEEECCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred ceEEEECCCCCcEEEEEECCCCCE-EEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEE
Confidence 345667799999999999999996 88887 89999999987654321 111135689999999999
Q ss_pred ecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 416 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
+|||++|++|+.||+|++||+...... ....+.+|...|.+++|+|++. ++++++.|+.|++||+.++++.....+|
T Consensus 106 s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 182 (337)
T d1gxra_ 106 LPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred cCCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 999999999999999999999865432 2335778999999999999999 7999999999999999999999999999
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
...|.+++|+ +++..+++++.|+.|++||+++.+....+. +.. .+..++|+|++++
T Consensus 183 ~~~v~~l~~s--~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~---------------------~i~~l~~~~~~~~ 238 (337)
T d1gxra_ 183 TDGASCIDIS--NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS---------------------QIFSLGYCPTGEW 238 (337)
T ss_dssp SSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS---------------------CEEEEEECTTSSE
T ss_pred cccccccccc--ccccccccccccccccccccccceeecccc-ccc---------------------ceEEEEEcccccc
Confidence 9999999985 556799999999999999998765544332 222 4555666667778
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccC
Q 001318 576 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 655 (1101)
Q Consensus 576 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 655 (1101)
+++++.|+.|++||+.+++..... .+...|.+++|+|++++|++++.||.|++||..++ +.+..+
T Consensus 239 l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~-~~~~~~----------- 303 (337)
T d1gxra_ 239 LAVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIFQS----------- 303 (337)
T ss_dssp EEEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE-----------
T ss_pred cceecccccccccccccccccccc---ccccccceEEECCCCCEEEEEeCCCeEEEEECCCC-CEEEEc-----------
Confidence 999999999999999988765443 33447999999999999999999999999998776 221111
Q ss_pred CCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcc
Q 001318 656 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 735 (1101)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 735 (1101)
T Consensus 304 -------------------------------------------------------------------------------- 303 (337)
T d1gxra_ 304 -------------------------------------------------------------------------------- 303 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEcCCCceEEeeecCceEEeeec
Q 001318 736 LRATKISRLIFTNSGNAILALASNAIHLLWKW 767 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 767 (1101)
.|...|.+++|+|++++|++++.||.|+|||+
T Consensus 304 ~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 15678999999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.2e-35 Score=320.58 Aligned_cols=306 Identities=16% Similarity=0.311 Sum_probs=264.2
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.+.+|++.|++++|+|++++ |+||+.||+|+|||+.+++.+.. +.+|...|.+++|+|++
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~-l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~~ 71 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSG 71 (317)
T ss_dssp EEECCSSCEEEEEECSSSSE-EEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEcCCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeeccc
Confidence 35579999999999999995 99999999999999999987763 78899999999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
.++++++.++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++||+.+++.+..+.+|...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 146 (317)
T d1vyhc1 72 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 146 (317)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred cccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence 999999999999999998876544 5778999999999999999 79999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.+++|+ +++.+|++++.|+.|++|++.+......+..+...+..+.+++++......... ..........+..++++
T Consensus 147 ~~~~~~--~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 223 (317)
T d1vyhc1 147 RMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSG 223 (317)
T ss_dssp EEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEE
T ss_pred eeeecc--cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccc-cceeeeeccCCceeEec
Confidence 999975 566899999999999999999999999999999999999999988643332222 23344455667889999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
+.|+.|++||+.+++++..+..+.. .|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 224 ~~d~~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~-------------- 286 (317)
T d1vyhc1 224 SRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN-------------- 286 (317)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE--------------
T ss_pred cCCCEEEEEECCCCcEEEEEeCCCC--CEEEEEECCCCCEEEEEECCCeEEEEECCCC-cEEEEEc--------------
Confidence 9999999999999999999986644 7999999999999999999999999998876 3333322
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 739 (1101)
+|..
T Consensus 287 ----------------------------------------------------------------------------~h~~ 290 (317)
T d1vyhc1 287 ----------------------------------------------------------------------------AHEH 290 (317)
T ss_dssp ----------------------------------------------------------------------------CCSS
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 2667
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeee
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
.|++++|+|++++|++++.||.|++||
T Consensus 291 ~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 291 FVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 899999999999999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-34 Score=325.71 Aligned_cols=328 Identities=18% Similarity=0.262 Sum_probs=252.8
Q ss_pred EEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCce
Q 001318 362 LVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE 441 (1101)
Q Consensus 362 atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~ 441 (1101)
..+..++.+.+|+....+.... .+. ...+|.+.|+||+|||||++||+|+ |++|+|||+.+++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~-~l~--------------~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~ 95 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDV-ELH--------------KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL 95 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEE-EEE--------------EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE
T ss_pred cccCCCCcEEEeCCCCCcceee-eeE--------------eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccce
Confidence 4566778889999776554331 110 1336999999999999999999986 89999999999876
Q ss_pred eeeee---------------eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeee
Q 001318 442 VRQHL---------------EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 506 (1101)
Q Consensus 442 ~~~~~---------------~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~ 506 (1101)
+.... ...+|...|++++|+|+++ +|++|+.|+.|++||...++.+..+.+|...|.+++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~- 172 (388)
T d1erja_ 96 VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF- 172 (388)
T ss_dssp EEEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-
T ss_pred EeeecccccccccccccccccccCCCCCEEEEEECCCCC--cceecccccccccccccccccccccccccccccccccc-
Confidence 54321 1235777899999999999 89999999999999999999999999999999999985
Q ss_pred cCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEE
Q 001318 507 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 586 (1101)
Q Consensus 507 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 586 (1101)
+++..+++++.++.+++||..+.........+.. ...+..+.+++++|++++.|+.|+
T Consensus 173 -~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~d~~i~ 230 (388)
T d1erja_ 173 -PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---------------------VTTVAVSPGDGKYIAAGSLDRAVR 230 (388)
T ss_dssp -TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---------------------EEEEEECSTTCCEEEEEETTSCEE
T ss_pred -cccccccccccceeeeeeeccccccccccccccc---------------------cccccccCCCCCeEEEEcCCCeEE
Confidence 4557999999999999999987655444333322 222233344567899999999999
Q ss_pred EEECCCCceeEEEcCC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 587 FWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 587 iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
+|+..++..+..+... .+...|.+++|+|++++|++++.||.|++||+.++... ......
T Consensus 231 i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~-------------- 295 (388)
T d1erja_ 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK-SDSKTP-------------- 295 (388)
T ss_dssp EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------------------
T ss_pred EeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccc-cccccc--------------
Confidence 9999999887776432 23457899999999999999999999999998766211 100000
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
.
T Consensus 296 ---------------------------------------------------------------------------~---- 296 (388)
T d1erja_ 296 ---------------------------------------------------------------------------N---- 296 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------------c----
Confidence 0
Q ss_pred EEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEE
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 821 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la 821 (1101)
.+. ....+ ..|...|.+++|+|++++|+
T Consensus 297 -------~~~---------~~~~~------------------------------------~~~~~~v~~~~~s~~~~~l~ 324 (388)
T d1erja_ 297 -------SGT---------CEVTY------------------------------------IGHKDFVLSVATTQNDEYIL 324 (388)
T ss_dssp ---------C---------EEEEE------------------------------------ECCSSCEEEEEECGGGCEEE
T ss_pred -------ccc---------eeeec------------------------------------ccccceEEEEEECCCCCEEE
Confidence 000 00000 01778899999999999999
Q ss_pred EEe-CCeEEEEECCCCceeeEecCCCCCeEEEEE------ecCCCcEEEEEeccCeEEEEEee
Q 001318 822 SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAF------HPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 822 ~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~------sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+|+ ||.|++||+.+++++.++++|.+.|+++++ +| ++++||+|+.||+|+||+++
T Consensus 325 sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred EEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence 999 899999999999999999999999999975 56 78999999999999999986
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-34 Score=320.43 Aligned_cols=282 Identities=12% Similarity=0.173 Sum_probs=239.9
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
|...|.+++|+|+|++|++++ ||.|+|||+....... .... ....+|...|.+++|+||
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~------------------~~~~--~~~~~h~~~I~~v~~s~d 108 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS------------------PVSQ--LDCLNRDNYIRSCKLLPD 108 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS------------------CSEE--EECSCTTSBEEEEEECTT
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc------------------eeEE--eeecCCCCcEEEEEEcCC
Confidence 889999999999999999876 8999999985432110 0001 111248889999999999
Q ss_pred CCEEEEEe-CCeEEEEECCC--CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCee
Q 001318 817 DSYVMSAS-GGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 893 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 893 (1101)
+++|++++ ||.|++||+.. .+....+..|...+.+++|+| ++.++++++.|+.|++|++.++++.....+|...|+
T Consensus 109 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~ 187 (337)
T d1gxra_ 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCEEEEeeccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 99999998 89999999874 455677888999999999999 899999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCcee
Q 001318 894 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC 972 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~ 972 (1101)
+++|++++..+++++.|+.|++||+.+++... ... +. ..|.+++|+|+++++++ +.|+.+++||+.+++.
T Consensus 188 ~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~-----~~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 258 (337)
T d1gxra_ 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ-----QHD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEE-----EEE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred cccccccccccccccccccccccccccceeec-----ccc-cc---cceEEEEEcccccccceecccccccccccccccc
Confidence 99999999999999999999999998865322 111 11 47899999999999998 5889999999999887
Q ss_pred eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 973 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 973 ~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
... ..|...|++++|+|||++|++++.||.|++||+.+++.+..+. | ...|. +++|+| ++++|++
T Consensus 259 ~~~---~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--------~-~~~v~--~~~~s~-d~~~l~t 323 (337)
T d1gxra_ 259 YQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------E-SSSVL--SCDISV-DDKYIVT 323 (337)
T ss_dssp EEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------C-SSCEE--EEEECT-TSCEEEE
T ss_pred ccc---cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc--------C-CCCEE--EEEEeC-CCCEEEE
Confidence 654 3788999999999999999999999999999999999887654 2 12255 899999 6799999
Q ss_pred EecCCcEEEEec
Q 001318 1053 GLSDGGVHVFEP 1064 (1101)
Q Consensus 1053 ~~~dg~v~vW~~ 1064 (1101)
|+.||+|+|||+
T Consensus 324 ~s~D~~I~vWdl 335 (337)
T d1gxra_ 324 GSGDKKATVYEV 335 (337)
T ss_dssp EETTSCEEEEEE
T ss_pred EeCCCeEEEEEE
Confidence 999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-34 Score=320.78 Aligned_cols=341 Identities=18% Similarity=0.296 Sum_probs=251.4
Q ss_pred cccCCCCCe-EEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 402 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 402 ~~~~h~~~V-~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
+|.||...| +|+ ++||++||+|+.||+|+|||+.+++.+. ++.+|.++|++++|++++ +|++|+.|++|++
T Consensus 7 tL~GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i 78 (355)
T d1nexb2 7 TLRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 78 (355)
T ss_dssp EEECCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred EECCcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccccc
Confidence 588999886 555 5578999999999999999999988665 688999999999999864 6999999999999
Q ss_pred EeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccC-CceEEecc
Q 001318 481 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD-GTRTYQGF 559 (1101)
Q Consensus 481 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~~~~~~ 559 (1101)
|++...+.......+............+++.++++++.|+.|++||+.+............... ....+. ........
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 157 (355)
T d1nexb2 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL-VFHTPEENPYFVGVL 157 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCE-EESCTTTCTTEEEEE
T ss_pred ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecc-ceeccccccceeeee
Confidence 9999999887776655555555555567778999999999999999987655443322221111 111111 11122222
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
......+..+.++++.++++..|+.|++||+.+++.+.....+.. .+.++.|++++.++++++.|+.|++|+..++ .
T Consensus 158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~ 234 (355)
T d1nexb2 158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIYDHERKRCISASMDTTIRIWDLENG-E 234 (355)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEETTTTEEEEEETTSCEEEEETTTC-C
T ss_pred eeccccccccccccceeeeecccceeeeeecccccceeeeecccc--ccccccccccceeeecccccceEEeeecccc-c
Confidence 223344556777889999999999999999999998888875543 6788999999999999999999999998765 2
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
.+..+.
T Consensus 235 ~~~~~~-------------------------------------------------------------------------- 240 (355)
T d1nexb2 235 LMYTLQ-------------------------------------------------------------------------- 240 (355)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 111111
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
T Consensus 241 -------------------------------------------------------------------------------- 240 (355)
T d1nexb2 241 -------------------------------------------------------------------------------- 240 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEE-EEecCCCcEEEEEeccCeEEEEEee
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l-~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+|...|.+++++ +++|++++ ||.|++||+.++... +..|...+.++ ++++ ++++|++| .||.|+|||++
T Consensus 241 ---~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~~g-~d~~i~vwd~~ 311 (355)
T d1nexb2 241 ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYV-SDNILVSG-SENQFNIYNLR 311 (355)
T ss_dssp ---CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEE-CSSEEEEE-ETTEEEEEETT
T ss_pred ---cccccccccccc--cceeeeeeccccccccccccccee--cccccCCceEEEEEcC-CCCEEEEE-eCCEEEEEECC
Confidence 145556666664 35777777 788888888776543 33455555555 4566 77777766 48999999999
Q ss_pred cceEee-eecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 878 VDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 878 ~~~~~~-~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+++++. .+.+|.++|++++|+|+ .++++++.||+++||.+
T Consensus 312 tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 312 SGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp TCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 999885 57889999999999987 57888999999777654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-33 Score=320.01 Aligned_cols=329 Identities=16% Similarity=0.256 Sum_probs=248.6
Q ss_pred EEEEcCCeEEEEEccCCceee-eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec--------
Q 001318 423 GVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-------- 493 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------- 493 (1101)
..+..++.+.+|+....+.+. ......+|.+.|++|+|+|||+ +|++|+ |++|+|||+.+++.+..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence 456778889999987655432 1223346999999999999999 788887 8999999999998887664
Q ss_pred ----------CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCc
Q 001318 494 ----------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563 (1101)
Q Consensus 494 ----------~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 563 (1101)
+|...|++++|+ +++++|++|+.||.|++||....+.......|...|.++.+++++
T Consensus 109 ~~~~~~~~~~~~~~~V~~l~~s--~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------- 175 (388)
T d1erja_ 109 PENLNTSSSPSSDLYIRSVCFS--PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG----------- 175 (388)
T ss_dssp ----------CCCCBEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-----------
T ss_pred ccccccccccCCCCCEEEEEEC--CCCCcceeccccccccccccccccccccccccccccccccccccc-----------
Confidence 356679999985 567899999999999999999888777777777766666665554
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCcccccc
Q 001318 564 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLR 642 (1101)
Q Consensus 564 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~ 642 (1101)
..+++++.++.+++||..+.........+.. ..++.+.+ ++++|++++.||.|++|+..++ ....
T Consensus 176 ----------~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~ 241 (388)
T d1erja_ 176 ----------DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVE 241 (388)
T ss_dssp ----------SEEEEEETTSEEEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEE
T ss_pred ----------ccccccccceeeeeeeccccccccccccccc---cccccccCCCCCeEEEEcCCCeEEEeecccC-ccce
Confidence 5789999999999999999888877765443 44555655 8999999999999999998876 2222
Q ss_pred ccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccC
Q 001318 643 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 722 (1101)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~ 722 (1101)
.+.....
T Consensus 242 ~~~~~~~------------------------------------------------------------------------- 248 (388)
T d1erja_ 242 RLDSENE------------------------------------------------------------------------- 248 (388)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred eeccccc-------------------------------------------------------------------------
Confidence 1110000
Q ss_pred CCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCC
Q 001318 723 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 802 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~ 802 (1101)
...+|...|.+++|+|+++.|++++.|+.+++|++... ....
T Consensus 249 ----------~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~----------------------~~~~------ 290 (388)
T d1erja_ 249 ----------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA----------------------NNKS------ 290 (388)
T ss_dssp ------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------------------------------
T ss_pred ----------cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC----------------------cccc------
Confidence 00125667777777777777777777777777765211 0000
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 803 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
.. .....+........|...|.+++|+| ++++|++|+.||.|++||+.+++++
T Consensus 291 -------~~-------------------~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~ 343 (388)
T d1erja_ 291 -------DS-------------------KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPL 343 (388)
T ss_dssp ----------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEE
T ss_pred -------cc-------------------ccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEE
Confidence 00 00012233445566888999999999 8999999999999999999999999
Q ss_pred eeecCcccCeeEEEE------cCCCCEEEEEeCCCceEEEeCC
Q 001318 883 SKLKGHSKRITGLAF------SHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~------s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
.++.+|.+.|+++++ +||+.+||||+.||+|+||+++
T Consensus 344 ~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 999999999999975 6789999999999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.7e-34 Score=308.86 Aligned_cols=284 Identities=13% Similarity=0.129 Sum_probs=232.6
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
+.+....++++|+|+.|+.++ ++.+.+|++.. +..... +. +|...|++++|+|+
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~----------------------~~~~~~-~~--~H~~~v~~~~~sp~ 69 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------LTDTEI-YT--EHSHQTTVAKTSPS 69 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------SSCCEE-EC--CCSSCEEEEEECTT
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC----------------------CceeEE-Ec--CCCCCEEEEEEeCC
Confidence 345666789999999888764 55788888732 222211 22 38999999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCcee--eEecCCCCCeEEEEEecCCCcEEEEEec--cCeEEEEEeecceEeeeecCcccC
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHSKR 891 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~~~~~l~~h~~~ 891 (1101)
|++||+|+ ||+|++||+.++... ..+..|...|.+++|+| ++++|++++. +..++||++.+++...++.+|.+.
T Consensus 70 g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~ 148 (311)
T d1nr0a1 70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA 148 (311)
T ss_dssp SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred CCeEeccccCceEeeeeeeccccccccccccccCccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 99999999 999999999887654 55788999999999999 8999988875 456999999999999999999999
Q ss_pred eeEEEEcCCCCE-EEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCC
Q 001318 892 ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 969 (1101)
Q Consensus 892 V~~l~~s~dg~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~ 969 (1101)
|++++|+|++++ |++|+.|++|++||+++++ ......+|. ..|.+++|+|+++++++ +.|+.+++||+.+
T Consensus 149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-----~~~~~~~~~---~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~ 220 (311)
T d1nr0a1 149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----FKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220 (311)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----EEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cccccccccceeeecccccccccccccccccc-----ccccccccc---ccccccccCcccccccccccccccccccccc
Confidence 999999999885 8899999999999999854 334444444 47999999999999998 5799999999999
Q ss_pred ceeeeeccC-----CCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeC
Q 001318 970 LECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1044 (1101)
Q Consensus 970 ~~~~~~~~~-----~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~ 1044 (1101)
+.....+.. .+|...|++++|+||+++|++|+.||+|+|||+.+++++..+.... ......+++.|+
T Consensus 221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~-------~~~~~~~~~~~~- 292 (311)
T d1nr0a1 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-------RIEDQQLGIIWT- 292 (311)
T ss_dssp CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-------SGGGCEEEEEEC-
T ss_pred ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC-------CccceEEEEEec-
Confidence 887766543 3688999999999999999999999999999999999998876221 111222345554
Q ss_pred CCCCEEEEEecCCcEEEEecc
Q 001318 1045 QEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1045 ~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
+++|++++.||.|++||++
T Consensus 293 --~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 293 --KQALVSISANGFINFVNPE 311 (311)
T ss_dssp --SSCEEEEETTCCEEEEETT
T ss_pred --CCEEEEEECCCEEEEEeCC
Confidence 4689999999999999974
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.8e-34 Score=310.49 Aligned_cols=255 Identities=15% Similarity=0.180 Sum_probs=212.2
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
+++.+.+++++|+|+. |+.++ ++.|.+||+.+++... .+.+|...|++++|+|||++||
T Consensus 16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~-------------------~~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeE-------------------EEcCCCCCEEEEEEeCCCCeEe
Confidence 4567788999999996 66654 5789999999887665 4789999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC--CCcEEEEeCCCCceEEEecCcccCeEE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYS 501 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~ 501 (1101)
+|+.||+|+|||+.+++.... ..+.+|.++|.+++|+|+++ ++++++. +..++||++++++.+..+.+|...|.+
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 999999999999998875432 35778999999999999999 6777664 567999999999999999999999999
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
++|+++.+ ..|++|+.||.|++||+++.+....+..|...|.++.++|+ ++++++++.
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~---------------------~~~l~~~~~ 209 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD---------------------GSLFASTGG 209 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT---------------------SSEEEEEET
T ss_pred ccccccce-eeecccccccccccccccccccccccccccccccccccCcc---------------------ccccccccc
Confidence 99965432 35889999999999999987777766666665555555554 458999999
Q ss_pred CCcEEEEECCCCceeEEEcCC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccc
Q 001318 582 DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
|+.|++||+.++..+..+... ++...|.+++|+|++++|++|+.||.|++||+.++ ++++.+.
T Consensus 210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-~~~~~l~ 277 (311)
T d1nr0a1 210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIP 277 (311)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC-cEEEEEE
Confidence 999999999999888777532 23457999999999999999999999999999888 5555443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-33 Score=308.84 Aligned_cols=346 Identities=14% Similarity=0.173 Sum_probs=262.6
Q ss_pred EEEecCcccCe-EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 489 QYIFEGHEAPV-YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 489 ~~~~~~h~~~v-~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
..+|+||...| +|+.+ + +++|++|+.||+|++||+.+++....+..|...|.+++|++++
T Consensus 5 ~~tL~GH~~~vitc~~~--~--~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~--------------- 65 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--E--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--------------- 65 (355)
T ss_dssp EEEEECCSSSCEEEEEE--E--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT---------------
T ss_pred cEEECCcCCCcEEEEEE--C--CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC---------------
Confidence 45789998886 55543 3 4699999999999999999998888888888888888777654
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccc
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 647 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 647 (1101)
+|++++.|+.|++|+....+..................+.+++.++++++.|+.|++|++.+.. ........
T Consensus 66 -------~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~-~~~~~~~~ 137 (355)
T d1nexb2 66 -------ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES-SVPDHGEE 137 (355)
T ss_dssp -------EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------
T ss_pred -------EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCc-eecccccc
Confidence 5999999999999999999888877766554455667788999999999999999999987662 11111000
Q ss_pred cccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccc
Q 001318 648 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 727 (1101)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 727 (1101)
..
T Consensus 138 ~~------------------------------------------------------------------------------ 139 (355)
T d1nexb2 138 HD------------------------------------------------------------------------------ 139 (355)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred ce------------------------------------------------------------------------------
Confidence 00
Q ss_pred cccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCC
Q 001318 728 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 807 (1101)
Q Consensus 728 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~ 807 (1101)
.......+...... +.... .|...
T Consensus 140 -------------~~~~~~~~~~~~~~-------~~~~~------------------------------------~~~~~ 163 (355)
T d1nexb2 140 -------------YPLVFHTPEENPYF-------VGVLR------------------------------------GHMAS 163 (355)
T ss_dssp -------------CCEEESCTTTCTTE-------EEEEE------------------------------------CCSSC
T ss_pred -------------eccceeccccccce-------eeeee------------------------------------ecccc
Confidence 00000000000000 00000 02333
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec
Q 001318 808 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 886 (1101)
+ ..+.+++++++++. |+.|++||+.+++.+....++...+.++.|++ ++.++++++.||.|++||+.++..+..+.
T Consensus 164 v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 240 (355)
T d1nexb2 164 V--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQ 240 (355)
T ss_dssp E--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred c--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccc
Confidence 3 34556788899988 89999999999999999999999999999999 89999999999999999999999999999
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEE
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 966 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd 966 (1101)
+|...|.+++|+ +++|++++.||+|++||+.++... +..... ......++++++.+++++.|+.|++||
T Consensus 241 ~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~l~~g~d~~i~vwd 309 (355)
T d1nexb2 241 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK----FSYHHT-----NLSAITTFYVSDNILVSGSENQFNIYN 309 (355)
T ss_dssp CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE----EEEECT-----TCCCCCEEEECSSEEEEEETTEEEEEE
T ss_pred cccccccccccc--cceeeeeeccccccccccccccee----cccccC-----CceEEEEEcCCCCEEEEEeCCEEEEEE
Confidence 999999999996 579999999999999999875421 222111 122334678899999889999999999
Q ss_pred cCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001318 967 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 967 ~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
+++++++.... .+|...|++++|+|+ .++++++.||+++||.+
T Consensus 310 ~~tg~~~~~~~-~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 310 LRSGKLVHANI-LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp TTTCCBCCSCT-TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CCCCCEEEEEe-cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 99999886533 378999999999987 57888999999776643
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.7e-32 Score=299.94 Aligned_cols=286 Identities=14% Similarity=0.188 Sum_probs=237.4
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
+|.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|+.+++|
T Consensus 50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeecc
Confidence 588999999999999999999999999999999999988665 5778999999999999999 89999999999999
Q ss_pred eCCCC----ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEe
Q 001318 482 DATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 482 d~~~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
+.... .....+.+|........... +..+.....|.....|................
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 185 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTG---------------- 185 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSS----------------
T ss_pred cccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccce----------------
Confidence 97654 34567778887776655432 25788888899999998776554444443333
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.+....+.+.+.++++++.|+.|++||+++++++..+..|. ..|.+++|+|++++|++++.||.|++|++...
T Consensus 186 -----~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~--~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~ 258 (340)
T d1tbga_ 186 -----DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp -----CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -----eEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCC--CCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence 34445555666789999999999999999999999998654 47999999999999999999999999997654
Q ss_pred cccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeee
Q 001318 638 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 717 (1101)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 717 (1101)
. ....+.
T Consensus 259 ~-~~~~~~------------------------------------------------------------------------ 265 (340)
T d1tbga_ 259 Q-ELMTYS------------------------------------------------------------------------ 265 (340)
T ss_dssp E-EEEEEC------------------------------------------------------------------------
T ss_pred c-cccccc------------------------------------------------------------------------
Confidence 1 110000
Q ss_pred ccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc
Q 001318 718 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 797 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 797 (1101)
T Consensus 266 -------------------------------------------------------------------------------- 265 (340)
T d1tbga_ 266 -------------------------------------------------------------------------------- 265 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 798 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 798 ~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
...+...+.+++|+|++++|++|+ ||.|++||+.+++++.++.+|...|++++|+| ++++||+|+.||.|+|||
T Consensus 266 ---~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 266 ---HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred ---cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence 001455688899999999999998 89999999999999999999999999999999 899999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2e-32 Score=306.84 Aligned_cols=307 Identities=15% Similarity=0.188 Sum_probs=229.4
Q ss_pred CCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC
Q 001318 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 486 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 486 (1101)
..+|+|++|||||++||+|+.|+.|+|||+.+++. .....+.+|.++|++++|+|+++ +|++|+.|++|+|||+.++
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~ 83 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR 83 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccc
Confidence 46899999999999999999999999999988763 34457889999999999999999 8999999999999999877
Q ss_pred ceE--EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 487 AKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 487 ~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
... ..+.+|...|.+++|+ ++++.|++++.|++|++|+++.......
T Consensus 84 ~~~~~~~~~~~~~~v~~i~~~--p~~~~l~~~s~d~~i~i~~~~~~~~~~~----------------------------- 132 (371)
T d1k8kc_ 84 TWKPTLVILRINRAARCVRWA--PNEKKFAVGSGSRVISICYFEQENDWWV----------------------------- 132 (371)
T ss_dssp EEEEEEECCCCSSCEEEEEEC--TTSSEEEEEETTSSEEEEEEETTTTEEE-----------------------------
T ss_pred ccccccccccccccccccccc--cccccceeecccCcceeeeeeccccccc-----------------------------
Confidence 644 4556788889998885 4557888888888888887654221100
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccc
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
. .... ..+...|.+++|+|++++|++|+.|++|++|+..... .....
T Consensus 133 -------------~-----------------~~~~--~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~-~~~~~ 179 (371)
T d1k8kc_ 133 -------------C-----------------KHIK--KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE-VEERP 179 (371)
T ss_dssp -------------E-----------------EEEC--TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT-TSCCC
T ss_pred -------------c-----------------cccc--cccccccccccccccccceeccccCcEEEEEeeccCc-ccccc
Confidence 0 0111 1223468899999999999999999999999976541 11000
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCC
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 724 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 724 (1101)
.. ..|+..
T Consensus 180 ~~-------------------------------------------------------------------~~~~~~----- 187 (371)
T d1k8kc_ 180 AP-------------------------------------------------------------------TPWGSK----- 187 (371)
T ss_dssp CC-------------------------------------------------------------------BTTBSC-----
T ss_pred cc-------------------------------------------------------------------cccccc-----
Confidence 00 000000
Q ss_pred ccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCC
Q 001318 725 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 804 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~ 804 (1101)
.+.+..+. ....|
T Consensus 188 ----------------------~~~~~~~~---------------------------------------------~~~~~ 200 (371)
T d1k8kc_ 188 ----------------------MPFGELMF---------------------------------------------ESSSS 200 (371)
T ss_dssp ----------------------CCTTCEEE---------------------------------------------ECCCC
T ss_pred ----------------------ccceeeee---------------------------------------------eccCc
Confidence 00000000 01127
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc--eE
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EV 881 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~ 881 (1101)
...|.+++|+|++++|++++ |+.|++||+.+++.+..+..|..+|.+++|+| ++++|++|. |+.+++|..... ..
T Consensus 201 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~ 278 (371)
T d1k8kc_ 201 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKL 278 (371)
T ss_dssp SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEE
T ss_pred cCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceE
Confidence 78899999999999999998 89999999999999999999999999999999 898888665 777777665431 11
Q ss_pred ee---------------------------------------eecCcccCeeEEEEcCCC----CEEEEEeCCCceEEEeC
Q 001318 882 KS---------------------------------------KLKGHSKRITGLAFSHAL----NVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 882 ~~---------------------------------------~l~~h~~~V~~l~~s~dg----~~l~s~s~D~~v~iwd~ 918 (1101)
.. ....|.+.|+++++.+++ ..++|+|.||+|+|||+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~ 358 (371)
T d1k8kc_ 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358 (371)
T ss_dssp EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred EEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence 00 001388899999998754 46899999999999999
Q ss_pred CCc
Q 001318 919 DGW 921 (1101)
Q Consensus 919 ~~~ 921 (1101)
++.
T Consensus 359 ~~~ 361 (371)
T d1k8kc_ 359 RSL 361 (371)
T ss_dssp HHH
T ss_pred CcC
Confidence 763
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.3e-32 Score=297.87 Aligned_cols=317 Identities=19% Similarity=0.293 Sum_probs=248.6
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
++.||.+.|.+ +++++|++||||+.||+|+|||+.+++.+. ++.+|.+.|.+++|+++ +|++|+.|+.+++|
T Consensus 11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~---~~~~h~~~V~~v~~~~~----~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMRDN----IIISGSTDRTLKVW 82 (342)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEETT----EEEEEETTSCEEEE
T ss_pred EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE---EEeCCCCCEEEEEeCCC----ccccceeccccccc
Confidence 58999999875 477889999999999999999999998765 68899999999999874 69999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
+............+...+..... .. ..+..+..|+.+.+|+..+......+.......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~------------------ 140 (342)
T d2ovrb2 83 NAETGECIHTLYGHTSTVRCMHL--HE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV------------------ 140 (342)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEE--ET--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCE------------------
T ss_pred ccccccceecccccceeEeeeec--cc--ccccccccceeEEEeecccccceeeeecccccc------------------
Confidence 99988888777767766665543 22 578889999999999998876555443332211
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
....+....+++++.|+.|++||....+.+..+..+. .....+++++.++++++.||.|++||+..+ +.+
T Consensus 141 -----~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~-~~~ 210 (342)
T d2ovrb2 141 -----RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETG-NCI 210 (342)
T ss_dssp -----EEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred -----eeeccccceeeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccc-eee
Confidence 1222334568899999999999999999888887553 345667778999999999999999997655 211
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..+.
T Consensus 211 ~~~~---------------------------------------------------------------------------- 214 (342)
T d2ovrb2 211 HTLT---------------------------------------------------------------------------- 214 (342)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred eEec----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
T Consensus 215 -------------------------------------------------------------------------------- 214 (342)
T d2ovrb2 215 -------------------------------------------------------------------------------- 214 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC---CCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+|...+.+++++ +++|++++ |+.|++||+...+....+..+ ...+.++.++ ++++++|+.||.|+|||+.
T Consensus 215 -~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 215 -GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK 288 (342)
T ss_dssp -CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred -ccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECC
Confidence 034445555443 45788887 888999998888877777654 4456666665 4699999999999999999
Q ss_pred cceEeeee-----cCcccCeeEEEEcCCCCEEEEEeCCCc----eEEEeCCC
Q 001318 878 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG 920 (1101)
Q Consensus 878 ~~~~~~~l-----~~h~~~V~~l~~s~dg~~l~s~s~D~~----v~iwd~~~ 920 (1101)
+++++..+ .+|.+.|++++|+|++.+|++|+.||+ |++||++.
T Consensus 289 tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 99988776 368889999999999999999999986 99999864
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1e-31 Score=297.14 Aligned_cols=292 Identities=20% Similarity=0.311 Sum_probs=245.7
Q ss_pred eeecc-cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 338 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 338 ~~~~~-~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
..+++ +|.+.|++++|+|++++ ||||+.||+|+|||+.+++.+.. +..|...|.+++|+
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~-l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~~ 106 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYA 106 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEEC
T ss_pred eeEEECCCCCCEEEEEECCCCCE-EEEEECCCceeeeecccceeEEE-------------------EecccccEEeeEee
Confidence 34444 69999999999999995 99999999999999999988763 67899999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
|+++++++|+.|+.+++|+....... .....+.+|...........+. .+.....|.....|+............+
T Consensus 107 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (340)
T d1tbga_ 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp TTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEECC
T ss_pred ccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccccc
Confidence 99999999999999999998765432 2334577888877777776655 4788888999999998888888777778
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
...+....+. +.+.++++++.|+.|++||+++......+..|...|.+++|+|++ ++
T Consensus 184 ~~~~~~~~~~--~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~---------------------~~ 240 (340)
T d1tbga_ 184 TGDVMSLSLA--PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG---------------------NA 240 (340)
T ss_dssp SSCEEEEEEC--TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SE
T ss_pred ceeEeeeccc--cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCC---------------------CE
Confidence 8888877764 455799999999999999999988877777777666666655554 58
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccC
Q 001318 576 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 655 (1101)
Q Consensus 576 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 655 (1101)
|++++.|+.|++|++.....+..+....+...+.+++|+|++++|++|+.||.|++||+.++ +.+..+.
T Consensus 241 l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~---------- 309 (340)
T d1tbga_ 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLA---------- 309 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC-CEEEEEC----------
T ss_pred EEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC-cEEEEEc----------
Confidence 99999999999999999998888876666677999999999999999999999999998876 3333222
Q ss_pred CCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcc
Q 001318 656 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 735 (1101)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 735 (1101)
T Consensus 310 -------------------------------------------------------------------------------- 309 (340)
T d1tbga_ 310 -------------------------------------------------------------------------------- 309 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEcCCCceEEeeecCceEEeee
Q 001318 736 LRATKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 310 ~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 2677899999999999999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.2e-32 Score=306.54 Aligned_cols=263 Identities=12% Similarity=0.074 Sum_probs=206.3
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
.++|+|++|||||++ ||+|+.||.|+|||+.+++..... .+.+|.+.|.+++|+|++++|++
T Consensus 7 ~~pIt~~~~s~dg~~-la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCCE-EEEEeCCCEEEEEECCCCCEEEEE-----------------EecCCCCCEEEEEECCCCCEEEE
Confidence 378999999999995 899999999999999877643321 47899999999999999999999
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE----EEecCcccCeE
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVY 500 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~ 500 (1101)
|+.|++|+|||+.++... ....+.+|...|.+++|+|+++ .|++|+.|++|++|++...... .....|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 999999999999987543 3345678999999999999999 7999999999999998876543 34567899999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec-cccCceeEEEEcCCCCEEEEE
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
+++|+ +++.+|++|+.|++|++|+................ ...+.+...... .+...+..++|+|++++++++
T Consensus 146 ~v~~~--p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 219 (371)
T d1k8kc_ 146 SLDWH--PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG----SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219 (371)
T ss_dssp EEEEC--TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB----SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred ccccc--ccccceeccccCcEEEEEeeccCcccccccccccc----ccccceeeeeeccCccCcEEEEEeeccccccccc
Confidence 99985 56689999999999999998764432211110000 001111122211 223467788899999999999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+.|+.|++||+.+++.+..+..+.. +|.+++|+|++++|++|. |+.+++|.....
T Consensus 220 ~~d~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 220 SHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGH-DCFPVLFTYDSA 274 (371)
T ss_dssp ETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred ccCCcceEEeeecccceeeeecccc--cceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence 9999999999999999999886644 699999999998887665 788778776554
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.1e-31 Score=288.95 Aligned_cols=294 Identities=15% Similarity=0.147 Sum_probs=226.5
Q ss_pred CceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhh
Q 001318 593 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAA 672 (1101)
Q Consensus 593 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1101)
|+..+.+.+|. ..|++++|+|++++|++|+.||+|++||+.++ +..+.+.
T Consensus 2 g~~~~~~~GH~--~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~--------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYGHN--KAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFP--------------------------- 51 (299)
T ss_dssp TEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSS---------------------------
T ss_pred CccceEcCCCC--CCcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEc---------------------------
Confidence 45667777664 47999999999999999999999999999877 3222211
Q ss_pred hcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCce
Q 001318 673 ATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 752 (1101)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 752 (1101)
..|...|.+++|+|++.
T Consensus 52 --------------------------------------------------------------~~h~~~v~~v~~~~~g~- 68 (299)
T d1nr0a2 52 --------------------------------------------------------------DVHATMITGIKTTSKGD- 68 (299)
T ss_dssp --------------------------------------------------------------CSCSSCEEEEEECTTSC-
T ss_pred --------------------------------------------------------------CCCCCcEEEEEeeccce-
Confidence 12677899999999997
Q ss_pred EEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEE
Q 001318 753 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 832 (1101)
Q Consensus 753 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd 832 (1101)
+++++.|+.+++|+........ ... ....+...+.++++++++++++++.++.+++|+
T Consensus 69 ~~~~~~d~~v~~~~~~~~~~~~-----------------~~~-----~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~ 126 (299)
T d1nr0a2 69 LFTVSWDDHLKVVPAGGSGVDS-----------------SKA-----VANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126 (299)
T ss_dssp EEEEETTTEEEEECSSSSSSCT-----------------TSC-----CEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred eecccceeeEEEeccCCccccc-----------------ccc-----ccccccccccccccccccccccccccccccccc
Confidence 6677889999999874321100 000 001256778999999999999998899999999
Q ss_pred CCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee-eecCcccCeeEEEEcCCCCEEEEEeCCC
Q 001318 833 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADS 911 (1101)
Q Consensus 833 ~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~~l~~s~dg~~l~s~s~D~ 911 (1101)
... ..... ....+.+++|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+
T Consensus 127 ~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 201 (299)
T d1nr0a2 127 HGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 201 (299)
T ss_dssp TTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccc--ccccc--cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 543 22222 345688999999 89999999999999999999877554 3457899999999999999999999999
Q ss_pred ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCC-CCCeeEEE
Q 001318 912 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRES-SAPITHAT 989 (1101)
Q Consensus 912 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~l~ 989 (1101)
.|++||+.++.... ......+|. ..|.+++|+|++++|++ +.|+.|++||+.++..........| ...+.++.
T Consensus 202 ~i~~~~~~~~~~~~--~~~~~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 276 (299)
T d1nr0a2 202 KVIPYSVANNFELA--HTNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 276 (299)
T ss_dssp CEEEEEGGGTTEES--CCCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE
T ss_pred cccccccccccccc--ccccccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE
Confidence 99999998754321 222333443 48999999999999999 5889999999998765444433344 45566665
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcC
Q 001318 990 FSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 990 ~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
++++++|++++.|++|++||+.
T Consensus 277 -~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 277 -WLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp -EEETTEEEEEETTSCEEEEECC
T ss_pred -ECCCCEEEEEeCCCEEEEEecc
Confidence 5677899999999999999974
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-31 Score=291.37 Aligned_cols=324 Identities=19% Similarity=0.263 Sum_probs=245.7
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
...|+||.+.|.+ +++++|+ +|+||+.|++|+|||+.++++++++.+|.+.|.+++|+ + .+|++++.|+.+++
T Consensus 9 ~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~--~--~~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 9 PKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--D--NIIISGSTDRTLKV 81 (342)
T ss_dssp CEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--T--TEEEEEETTSCEEE
T ss_pred CEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeC--C--Cccccceecccccc
Confidence 3468999999865 3666788 79999999999999999999999999999999999985 3 48999999999999
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 604 (1101)
|+................+.... .....+..+..|+.+.+|+..+++....+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~- 137 (342)
T d2ovrb2 82 WNAETGECIHTLYGHTSTVRCMH-----------------------LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV- 137 (342)
T ss_dssp EETTTTEEEEEECCCSSCEEEEE-----------------------EETTEEEEEETTSEEEEEESSSCCEEEEEECCS-
T ss_pred cccccccceecccccceeEeeee-----------------------cccccccccccceeEEEeecccccceeeeeccc-
Confidence 99887655444433333332222 222457888999999999999988877775432
Q ss_pred CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccc
Q 001318 605 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 684 (1101)
Q Consensus 605 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1101)
.....+.+....+++++.|+.+++|+.... ..+..+.+
T Consensus 138 ---~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~-------------------------------------- 175 (342)
T d2ovrb2 138 ---AAVRCVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQG-------------------------------------- 175 (342)
T ss_dssp ---SCEEEEEECSSCEEEEETTSCEEEEEGGGT-EEEEEECC--------------------------------------
T ss_pred ---ccceeeccccceeeeecCCCeEEEeecccc-eeeEEEcC--------------------------------------
Confidence 233455667778888888899999886544 11111100
Q ss_pred ccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEe
Q 001318 685 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 764 (1101)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 764 (1101)
T Consensus 176 -------------------------------------------------------------------------------- 175 (342)
T d2ovrb2 176 -------------------------------------------------------------------------------- 175 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEec
Q 001318 765 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 843 (1101)
Q Consensus 765 w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 843 (1101)
|.. ....+++++.++++++ ||.|++||+..++.+..+.
T Consensus 176 ---------------------------------------~~~--~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~ 214 (342)
T d2ovrb2 176 ---------------------------------------HTN--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 214 (342)
T ss_dssp ---------------------------------------CSS--CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ---------------------------------------ccc--ccccccCCCCEEEEEeCCCeEEEeecccceeeeEec
Confidence 222 2234455778899988 8999999999999999999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecC---cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 844 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 844 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
+|...+.++++++ ++|++|+.||.|++||+...+....+.+ |...+.++.+ +++++++++.||+|++||+++
T Consensus 215 ~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~t 289 (342)
T d2ovrb2 215 GHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKT 289 (342)
T ss_dssp CCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTT
T ss_pred ccccceeEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCC
Confidence 9999999888875 5999999999999999998877766654 5566666666 467999999999999999988
Q ss_pred cccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEE
Q 001318 921 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1000 (1101)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~ 1000 (1101)
++..... ......+|...|++++|+|++.+|++|
T Consensus 290 g~~i~~~----------------------------------------------~~~~~~~~~~~v~~v~~s~~~~~la~g 323 (342)
T d2ovrb2 290 GEFIRNL----------------------------------------------VTLESGGSGGVVWRIRASNTKLVCAVG 323 (342)
T ss_dssp CCEEEEE----------------------------------------------EECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred CCEEEEE----------------------------------------------ecccCCCCCCCEEEEEECCCCCEEEEE
Confidence 5421110 001112567789999999999999999
Q ss_pred EcCCe----EEEEEcCC
Q 001318 1001 FLDAT----VCVFSAAN 1013 (1101)
Q Consensus 1001 s~dg~----v~vwd~~~ 1013 (1101)
+.||+ |++||++.
T Consensus 324 ~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 324 SRNGTEETKLLVLDFDV 340 (342)
T ss_dssp CSSSSSCCEEEEEECCC
T ss_pred eCCCCCeeEEEEEeCCC
Confidence 98885 99999863
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=1.8e-30 Score=281.49 Aligned_cols=285 Identities=13% Similarity=0.084 Sum_probs=218.8
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
.+|...|++++|+|++++|++++.||.|++||+. ++........ .|...|.+++|+
T Consensus 9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~----------------------~~~~~~~~~~--~h~~~v~~v~~~ 64 (299)
T d1nr0a2 9 YGHNKAITALSSSADGKTLFSADAEGHINSWDIS----------------------TGISNRVFPD--VHATMITGIKTT 64 (299)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------------TCCEEECSSC--SCSSCEEEEEEC
T ss_pred CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECC----------------------CCcEEEEEcC--CCCCcEEEEEee
Confidence 5799999999999999999999999999999873 3333322222 388899999999
Q ss_pred cCCCEEEEEeCCeEEEEECCCCce---eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccC
Q 001318 815 KNDSYVMSASGGKISLFNMMTFKT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR 891 (1101)
Q Consensus 815 ~dg~~la~~sdg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~ 891 (1101)
|++++++++.|+.+++|+...... ......+...+.+++|++ +++++++++ ++.+++|+... ...... ...
T Consensus 65 ~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~--~~~~~~--~~~ 138 (299)
T d1nr0a2 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGK--LTEVPI--SYN 138 (299)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETTE--EEEEEC--SSC
T ss_pred ccceeecccceeeEEEeccCCcccccccccccccccccccccccc-ccccccccc-ccccccccccc--cccccc--ccc
Confidence 999988877799999999865332 122334667899999999 888777665 57899998543 333332 345
Q ss_pred eeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCc
Q 001318 892 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL 970 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~ 970 (1101)
+.+++|+|++++|++++.|+.|++||+.+++....... .|. ..|.+++|+|++++|++ +.|+.|++||+.++
T Consensus 139 ~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~----~~~---~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~ 211 (299)
T d1nr0a2 139 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI----VHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANN 211 (299)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE----ECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred cccccccccccccccccccccccccccccccccccccc----ccc---cccccccccccccccccccccccccccccccc
Confidence 78899999999999999999999999987653322221 222 47899999999999998 58899999999887
Q ss_pred eeeeec-cCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCE
Q 001318 971 ECVKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1049 (1101)
Q Consensus 971 ~~~~~~-~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~ 1049 (1101)
...... ...+|...|++++|+|++++|++|+.||.|++||+.++.....+. ...|....+. .+.| + ++.+
T Consensus 212 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~v~--~~~~-~-~~~~ 282 (299)
T d1nr0a2 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-----KGAHAMSSVN--SVIW-L-NETT 282 (299)
T ss_dssp TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE-----TTSSTTSCEE--EEEE-E-ETTE
T ss_pred ccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEE-----ecCCCCCcEE--EEEE-C-CCCE
Confidence 665433 335789999999999999999999999999999998876543322 1122233344 4444 4 3579
Q ss_pred EEEEecCCcEEEEecc
Q 001318 1050 FALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1050 l~s~~~dg~v~vW~~~ 1065 (1101)
|++++.||+|++||++
T Consensus 283 l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 283 IVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEETTSCEEEEECC
T ss_pred EEEEeCCCEEEEEecc
Confidence 9999999999999984
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=9.2e-30 Score=278.93 Aligned_cols=287 Identities=14% Similarity=0.148 Sum_probs=218.7
Q ss_pred cceEEEEEcCCCceEEeeecCc-eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCC-CCCeeEEEEec-
Q 001318 739 TKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-EEAVPCFALSK- 815 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~-~~~i~~~~~s~- 815 (1101)
..+++++|+|+++.++.++.+. .++.|+...... .... .+. +| ...|++++|+|
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~--------------------~~~~-~~~--gh~~~~v~~v~fsP~ 74 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV--------------------PPVV-QFT--GHGSSVVTTVKFSPI 74 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS--------------------CSEE-EEC--TTTTSCEEEEEECSS
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc--------------------cceE-EEe--CCCCCCEEEEEEeeC
Confidence 4567899999999988876653 355555321100 0000 111 24 56799999997
Q ss_pred -CCCEEEEEe-CCeEEEEECCCCcee--------eEecCCCCCeEEEEEecCCCcEEEEEec--cCeEEEEEeecceEee
Q 001318 816 -NDSYVMSAS-GGKISLFNMMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 816 -dg~~la~~s-dg~i~vwd~~~~~~~--------~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~~~~ 883 (1101)
++++|++|+ ||+|++||+..++.. ..+..|.+.|.+++|++ ++++|++++. ++.+++|+..+++++.
T Consensus 75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
T d1pgua1 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG 153 (325)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence 678999999 999999999765433 23456888999999999 8888887754 6789999999999999
Q ss_pred eecCcccCeeEEEEcCCCCE-EEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC-CcEEEE-EeCC
Q 001318 884 KLKGHSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHET 960 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~dg~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~-~~d~ 960 (1101)
.+.+|...|++++|+|++.+ +++++.|+.+++||+...+... ......++. ..|.+++|+|+ +.++++ +.|+
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~ 228 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR 228 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccc
Confidence 99999999999999999875 7789999999999998754322 222233333 47899999997 677887 5899
Q ss_pred eEEEEEcCCceeeeeccCCCCCCCeeEEEEc---CCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccc
Q 001318 961 QLAIFETTKLECVKQWVPRESSAPITHATFS---CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1037 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~s---pdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1037 (1101)
.|++||+.+++.+..+. +|...+.++.|+ |||++|++++.|++|+|||+.+++.+..+...... ..+..
T Consensus 229 ~i~iwd~~~~~~~~~l~--~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~------~~~~~ 300 (325)
T d1pgua1 229 KISCFDGKSGEFLKYIE--DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ------LGNQQ 300 (325)
T ss_dssp CEEEEETTTCCEEEECC--BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC------GGGCE
T ss_pred ceeeeeecccccccccc--ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCc------ccCeE
Confidence 99999999999988876 667777666666 79999999999999999999999999877622111 11333
Q ss_pred eEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1038 LVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1038 ~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
+++.+.+ +.+|++++.||.|++||+
T Consensus 301 ~~~~~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 301 VGVVATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred EEEEECC--CCEEEEEECCCEEEEEEC
Confidence 3455544 458999999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4e-29 Score=273.82 Aligned_cols=258 Identities=15% Similarity=0.207 Sum_probs=193.7
Q ss_pred CCCcEEEEEecCCCeEEEEEecC-CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCC-CCCeEEEEEec--CCC
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNV-GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIWSP--DGS 420 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp--dg~ 420 (1101)
...+++++|+|+|+. ++.++.+ ..|+.||....+... ...+.+| ...|++++|+| +|+
T Consensus 17 ~~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~ 78 (325)
T d1pgua1 17 RNFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQ 78 (325)
T ss_dssp TTCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCC
T ss_pred CCCeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccc-----------------eEEEeCCCCCCEEEEEEeeCCCCC
Confidence 345789999999996 5555543 345666654332211 0125566 56899999998 678
Q ss_pred eEEEEEcCCeEEEEEccCCceeee-----eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQ-----HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~-----~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
+||+|+.||+|+|||+..++.... ...+..|.++|.+++|+++++.+..++++.++.+++|++.+++.+..+.+|
T Consensus 79 ~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h 158 (325)
T d1pgua1 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH 158 (325)
T ss_dssp EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC
T ss_pred EEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeec
Confidence 999999999999999986553321 123567889999999999999533344456889999999999999999999
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec---CCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
...|.+++|++..+ .++++++.|+.+++||....+...... .+...|.+++|+|++
T Consensus 159 ~~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~-------------------- 217 (325)
T d1pgua1 159 SQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-------------------- 217 (325)
T ss_dssp SSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT--------------------
T ss_pred cccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeecccc--------------------
Confidence 99999999975443 468889999999999987755444332 233445555555443
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc---cCCCEEEEEeCCCcEEEEEecCcccccccc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+.++++++.|+.|++||+++++.+..+..+.. .+.++.|+ +++++|++++.|+.|+|||+.++ +.++.+
T Consensus 218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~--~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~-~~~~~~ 289 (325)
T d1pgua1 218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQE--PVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KCVQKW 289 (325)
T ss_dssp CCEEEEEETTCCEEEEETTTCCEEEECCBTTB--CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred ceeccccccccceeeeeecccccccccccccc--ccccceeeeeccCCCEEEEEeCCCeEEEEECCCC-CEEEEE
Confidence 36789999999999999999999999886544 45556665 68999999999999999999887 554444
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=9.6e-28 Score=258.04 Aligned_cols=269 Identities=18% Similarity=0.259 Sum_probs=206.9
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
...++.||.++|++++|+| |+||+.||+|++||+.++ ..+|...|.++++.+ + ..+++++.|++++
T Consensus 5 ~i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~--~-~~~~s~s~D~~v~ 70 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSK--A-QEYSSISWDDTLK 70 (287)
T ss_dssp EEEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCS--T-TCCEEEETTTEEE
T ss_pred eeEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecC--C-CeEEEEeeccccc
Confidence 3447999999999999976 799999999999998764 357999999999753 2 5689999999999
Q ss_pred EEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC
Q 001318 524 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG 603 (1101)
Q Consensus 524 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 603 (1101)
+|++...+ ....+. .+.+++++..+ ..+.++.+.+|+..+++.+..+....
T Consensus 71 ~w~~~~~~-------~~~~~~---------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (287)
T d1pgua2 71 VNGITKHE-------FGSQPK---------------------VASANNDGFTA-VLTNDDDLLILQSFTGDIIKSVRLNS 121 (287)
T ss_dssp ETTEEEEE-------CSSCEE---------------------EEEECSSSEEE-EEETTSEEEEEETTTCCEEEEEECSS
T ss_pred cccccccc-------ccccee---------------------eeeeccCCceE-EEeecccceeeeccceeeeeeccccc
Confidence 99875421 111233 34444444444 44566789999999999888876432
Q ss_pred CCCCcCeEEEccCCCEEEEEeCCC-cEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 604 GLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 604 ~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
...++++++..+++++.++ .+++|++.+..... .+
T Consensus 122 -----~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~-~~-------------------------------------- 157 (287)
T d1pgua2 122 -----PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DL-------------------------------------- 157 (287)
T ss_dssp -----CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-EC--------------------------------------
T ss_pred -----eeeeeeccCcceeeeccccceeeeeeccccceee-ee--------------------------------------
Confidence 3467888888888888765 68999864331000 00
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceE
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 762 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 762 (1101)
T Consensus 158 -------------------------------------------------------------------------------- 157 (287)
T d1pgua2 158 -------------------------------------------------------------------------------- 157 (287)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceee-
Q 001318 763 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA- 840 (1101)
Q Consensus 763 ~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~- 840 (1101)
. ..+...+++++|+|++++|++|+ ||.|++||+.++....
T Consensus 158 ------------------------------------~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~ 199 (287)
T d1pgua2 158 ------------------------------------K--TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS 199 (287)
T ss_dssp ------------------------------------S--SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred ------------------------------------e--eccCCceeEEEeccCccccccccccccccceeecccccccc
Confidence 0 01455688888888888888888 8899999998877654
Q ss_pred EecCCCCCeEEEEEecC---------CCcEEEEEeccCeEEEEEeec-ceEeeeecCcccCeeEEEEcCCCCEEEEEeCC
Q 001318 841 TFMPPPPAATFLAFHPQ---------DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 910 (1101)
Q Consensus 841 ~~~~~~~~i~~l~~sp~---------d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D 910 (1101)
.+.+|...|.+++|+|. ++.+||+|+.|+.|+|||+.+ .+.+..+.+|.+.|++++|+|++ .|+|+|.|
T Consensus 200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D 278 (287)
T d1pgua2 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD 278 (287)
T ss_dssp CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETT
T ss_pred cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECC
Confidence 36788999999999872 356899999999999999976 56778889999999999999986 68999999
Q ss_pred CceEEEeC
Q 001318 911 SQLCVWSS 918 (1101)
Q Consensus 911 ~~v~iwd~ 918 (1101)
++|++|++
T Consensus 279 ~~v~iW~i 286 (287)
T d1pgua2 279 ACIKRWNV 286 (287)
T ss_dssp SCEEEEEE
T ss_pred CeEEEEEE
Confidence 99999986
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.6e-27 Score=259.90 Aligned_cols=328 Identities=12% Similarity=0.088 Sum_probs=225.5
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
+..+|.+.|++|+||||+++||+|+.||+|+|||+.++..........+|..+|.+++|+|++.. +|++|+.|+.|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence 57899999999999999999999999999999999887655444445579999999999998765 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
++..+........+...+....+.. .+...+++++.|+++++||++.......
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~-------------------------- 137 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVI-------------------------- 137 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCE--------------------------
T ss_pred ecccccccccccccccccccccccc-cccccccccccccccceeecccccccee--------------------------
Confidence 9999888777765555544333322 3336788888888888887754222110
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
. ......+..........+.+++..+++++.|+.|++|++.......
T Consensus 138 ---------------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 184 (342)
T d1yfqa_ 138 ---------------A------------------VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184 (342)
T ss_dssp ---------------E------------------EEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred ---------------e------------------ecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc
Confidence 0 0001111111234457778889999999999999999987662211
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
.....
T Consensus 185 ~~~~~--------------------------------------------------------------------------- 189 (342)
T d1yfqa_ 185 GTIEE--------------------------------------------------------------------------- 189 (342)
T ss_dssp CEEEE---------------------------------------------------------------------------
T ss_pred eeeee---------------------------------------------------------------------------
Confidence 10000
Q ss_pred CCCccccccccCccccccceEEEE-EcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLI-FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~-~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
......+.... +..++..+++++.+|.+.+|++............... ........
T Consensus 190 -------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 246 (342)
T d1yfqa_ 190 -------------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF----------RCHRLNLK 246 (342)
T ss_dssp -------------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE----------ECCCCCTT
T ss_pred -------------cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee----------eeeeeccC
Confidence 00112233333 3445667888888899998887543221111100000 00011112
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
...|...+.+++|+|++++||+|+ ||.|++||+.+++.+.++..+ ..+..++|+| ++++||+|+.|+.+++|...
T Consensus 247 ~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~~-- 322 (342)
T d1yfqa_ 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNAAI-- 322 (342)
T ss_dssp CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCSSS--
T ss_pred CCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEe-CCCEEEEEEcCCcEEEeeee--
Confidence 234777899999999999999999 999999999999999888643 3466788899 88999999999988887543
Q ss_pred eEeeeecCcccCeeE
Q 001318 880 EVKSKLKGHSKRITG 894 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~ 894 (1101)
...+..|...|..
T Consensus 323 --~~~~~~~~~~i~~ 335 (342)
T d1yfqa_ 323 --DQTIELNASSIYI 335 (342)
T ss_dssp --CTTSCCCCCEEEE
T ss_pred --CCCccCCCCeEEE
Confidence 2345556666654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.7e-27 Score=267.10 Aligned_cols=294 Identities=16% Similarity=0.223 Sum_probs=196.2
Q ss_pred eeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce------EEEecCcccCeEEEeee-----ecCCccEEE
Q 001318 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK------QYIFEGHEAPVYSVCPH-----HKENIQFIF 514 (1101)
Q Consensus 446 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~h~~~v~~v~~~-----~~~~~~~l~ 514 (1101)
...++|.+.|.++++++ + +++|++.|++|+|||..+... ......|...+..+... ...++.+++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~--~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83 (393)
T ss_dssp EESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--C--EEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence 35679999999999874 4 699999999999999876532 22233354444333211 112335788
Q ss_pred EEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC-----CCEEEEEeCCCcEEEEE
Q 001318 515 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT-----KNRFLAAGDDFSIKFWD 589 (1101)
Q Consensus 515 s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~dg~i~iwd 589 (1101)
+++.||.|++|++...........+. ... .........+..+++.++ +.++++++.||.+++|+
T Consensus 84 s~~~dg~v~~w~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~ 152 (393)
T d1sq9a_ 84 TTSFSGDLLFYRITREDETKKVIFEK-------LDL----LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 152 (393)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEE-------ECC----SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred EEeCCCcEEEEEccCCCceeeeeccc-------cce----eeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEE
Confidence 99999999999986544322111000 000 000011122333444333 45789999999999999
Q ss_pred CCCCc---------------eeEEE-cCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccc
Q 001318 590 MDSVQ---------------LLTSI-DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 653 (1101)
Q Consensus 590 ~~~~~---------------~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 653 (1101)
+.... ..... ........+.+++|+|++ +|++|+.||+|++||+.++ +.+..+....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~----- 225 (393)
T d1sq9a_ 153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQH----- 225 (393)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECCC-----
T ss_pred eecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc-cccccccccc-----
Confidence 74321 01111 112223457899999998 8899999999999998876 2222111000
Q ss_pred cCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccC
Q 001318 654 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 733 (1101)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 733 (1101)
T Consensus 226 -------------------------------------------------------------------------------- 225 (393)
T d1sq9a_ 226 -------------------------------------------------------------------------------- 225 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE
Q 001318 734 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 813 (1101)
Q Consensus 734 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~ 813 (1101)
.+ .+|...|.+++|
T Consensus 226 ----------------------------------------------------------------~l--~~h~~~V~~l~~ 239 (393)
T d1sq9a_ 226 ----------------------------------------------------------------SM--INNSNSIRSVKF 239 (393)
T ss_dssp ---------------------------------------------------------------------CCCCCEEEEEE
T ss_pred ----------------------------------------------------------------cc--ccccceEEEccc
Confidence 00 015566666666
Q ss_pred ecCCCEEEEEe-CC---eEEEEECCCCceeeEe-------------cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 814 SKNDSYVMSAS-GG---KISLFNMMTFKTMATF-------------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 814 s~dg~~la~~s-dg---~i~vwd~~~~~~~~~~-------------~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
+|||++|++|+ |+ .|++||+++++.+..+ .+|...|++++|+| ++++|++|+.|++|+|||+
T Consensus 240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~ 318 (393)
T d1sq9a_ 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDV 318 (393)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEET
T ss_pred ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEEC
Confidence 66666666665 43 3667777666665554 47999999999999 9999999999999999999
Q ss_pred ecceEeeeecCcccCee----EEEEcCCCCEEEEEe
Q 001318 877 RVDEVKSKLKGHSKRIT----GLAFSHALNVLVSSG 908 (1101)
Q Consensus 877 ~~~~~~~~l~~h~~~V~----~l~~s~dg~~l~s~s 908 (1101)
.+++++.++.+|.+.|. .++|++++..+++++
T Consensus 319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred CCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 99999999999998886 588999999887655
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.8e-27 Score=266.87 Aligned_cols=348 Identities=10% Similarity=0.089 Sum_probs=230.0
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCcee---eeeeeeccccCCeeEEEE------cCCCCeEEEEEe
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAF------SHPNKQLCVITC 472 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~V~~~~~------s~d~~~~~l~s~ 472 (1101)
...+|.+.|.+++++ +++|++++.|++|+|||..+.+.. ........|...+..+.. +.... .+++++
T Consensus 9 ~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 85 (393)
T d1sq9a_ 9 AGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATT 85 (393)
T ss_dssp ESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred cCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEE
Confidence 478999999999986 479999999999999998765421 111122334444333322 22222 267899
Q ss_pred cCCCcEEEEeCCCCceEEE-----e-----cCcccCeEEEeeeecC---CccEEEEEecCCcEEEEecCCCCcee-eecC
Q 001318 473 GDDKTIKVWDATNGAKQYI-----F-----EGHEAPVYSVCPHHKE---NIQFIFSTALDGKIKAWLYDNLGSRV-DYEA 538 (1101)
Q Consensus 473 ~~d~~i~iwd~~~~~~~~~-----~-----~~h~~~v~~v~~~~~~---~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~ 538 (1101)
+.|+.|++|++..+..... . ..+...+..++|.... .+.++++++.||++++|++....... ....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 9999999999765432211 1 1245567777776543 25689999999999999986533221 1111
Q ss_pred CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC----CCCCCcCeEEEc
Q 001318 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----GGLPASPRIRFN 614 (1101)
Q Consensus 539 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s 614 (1101)
+......+..... ........+.+++|+|++ +|++|+.||+|++||+.+++++..+... ++...|++++|+
T Consensus 166 ~~~~~~~~~~~~~----~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 166 NWSPTLELQGTVE----SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240 (393)
T ss_dssp CCCCEEEEEEEEC----CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeccceeccccee----cccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence 1111111111000 011122346678888886 7899999999999999999988776532 355689999999
Q ss_pred cCCCEEEEEeCCCc---EEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCC
Q 001318 615 KDGCLLAVSTNDNG---IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM 691 (1101)
Q Consensus 615 ~~~~~l~~~~~dg~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1101)
|+|++|++|+.|++ |++||+.++ ..+..+......
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~----------------------------------------- 278 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHS----------------------------------------- 278 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------------------------------------------
T ss_pred cccceeeeecCCCCcceeeecccccc-eeeeeecccccc-----------------------------------------
Confidence 99999999999875 899998877 333222110000
Q ss_pred CCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccc
Q 001318 692 NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE 771 (1101)
Q Consensus 692 ~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~ 771 (1101)
.
T Consensus 279 ----------------------------------------------------------~--------------------- 279 (393)
T d1sq9a_ 279 ----------------------------------------------------------S--------------------- 279 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------c---------------------
Confidence 0
Q ss_pred cCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeE
Q 001318 772 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT 850 (1101)
Q Consensus 772 ~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~ 850 (1101)
.....+ .+|...|++++|+||+++|++++ |++|++||+++++++.++++|...|.
T Consensus 280 ----------------------~~~~~~--~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 280 ----------------------QASLGE--FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 335 (393)
T ss_dssp --------------------------CC--BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred ----------------------cceeee--ecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence 000001 13889999999999999999999 99999999999999999999988775
Q ss_pred ----EEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 851 ----FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 851 ----~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
.++|++ ++..+++++ ...++.+..+. .... .......|++++.|+.|++|.-
T Consensus 336 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~--------~~~~----~~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 336 IEEDILAVDE-HGDSLAEPG---VFDVKFLKKGW--------RSGM----GADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp SGGGCCCBCT-TSCBCSSCC---EEEEEEECTTT--------SBST----TCTTSCEEEEEETTTEEEEEEE
T ss_pred CCccEEEECC-CCCEEEEcc---cceEEECccCc--------eecc----ccCCCCEEEEEEcCCeEEEEeC
Confidence 588999 787776543 22222222221 0000 0123467899999999999963
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.5e-26 Score=244.98 Aligned_cols=277 Identities=21% Similarity=0.313 Sum_probs=208.0
Q ss_pred eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcE
Q 001318 443 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 522 (1101)
Q Consensus 443 ~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i 522 (1101)
.+.....+|...|+|++| |++ +|+||+.||+|+|||+.++++++++.+|.+.|.+++| ++++|++|+.|+.|
T Consensus 6 ~~i~~~~~~~~~V~c~~~--d~~--~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~----~~~~l~s~s~D~~i 77 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTV 77 (293)
T ss_dssp CCEECCCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCE
T ss_pred EEEeccCCCCCCEEEEEE--cCC--EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec----ccceeecccccccc
Confidence 333456678899998776 677 7999999999999999999999999999999999886 34699999999999
Q ss_pred EEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-C
Q 001318 523 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-A 601 (1101)
Q Consensus 523 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 601 (1101)
++|++............... .....+....++++..++.+++|+........... .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (293)
T d1p22a2 78 RVWDVNTGEMLNTLIHHCEA-----------------------VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134 (293)
T ss_dssp EEEESSSCCEEEEECCCCSC-----------------------EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred cccccccccccccccccccc-----------------------cccccccccceeecccccceeEeeccccccccccccc
Confidence 99999887655544333221 12233344568999999999999998765433222 1
Q ss_pred CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccc
Q 001318 602 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 681 (1101)
Q Consensus 602 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1101)
..+...+..+.+ ....+++++.|+.+++||..++ +.+..+.+
T Consensus 135 ~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~-~~~~~~~~----------------------------------- 176 (293)
T d1p22a2 135 VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLNG----------------------------------- 176 (293)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEEC-----------------------------------
T ss_pred ccccccccccee--cccccccccCCCceeeecCCCC-cEEEEEcc-----------------------------------
Confidence 233334444443 4567888888999999987665 22111100
Q ss_pred cccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCce
Q 001318 682 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI 761 (1101)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 761 (1101)
T Consensus 177 -------------------------------------------------------------------------------- 176 (293)
T d1p22a2 177 -------------------------------------------------------------------------------- 176 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceee
Q 001318 762 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA 840 (1101)
Q Consensus 762 i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~ 840 (1101)
+...+..+.+ ++.++++++ ||.|++||+.+...+.
T Consensus 177 ------------------------------------------~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~ 212 (293)
T d1p22a2 177 ------------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR 212 (293)
T ss_dssp ------------------------------------------CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred ------------------------------------------cccccccccC--CCCeEEEecCCCEEEEEecccceeee
Confidence 2223333333 455778877 8999999999999999
Q ss_pred EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc---------eEeeeecCcccCeeEEEEcCCCCEEEEEeCCC
Q 001318 841 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---------EVKSKLKGHSKRITGLAFSHALNVLVSSGADS 911 (1101)
Q Consensus 841 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---------~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~ 911 (1101)
.+.++...+.. +++ ++.+|++|+.||.|++||+.+. .++..+.+|.+.|++++| |+.+|+|+|.|+
T Consensus 213 ~~~~~~~~v~~--~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg 287 (293)
T d1p22a2 213 VLEGHEELVRC--IRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD 287 (293)
T ss_dssp EECCCSSCEEE--EEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred eecccceeeee--ccc-cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCC
Confidence 99888887765 455 6789999999999999998653 456788999999999999 567899999999
Q ss_pred ceEEEe
Q 001318 912 QLCVWS 917 (1101)
Q Consensus 912 ~v~iwd 917 (1101)
+|+|||
T Consensus 288 ~i~iWD 293 (293)
T d1p22a2 288 TILIWD 293 (293)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=7.8e-27 Score=250.85 Aligned_cols=276 Identities=10% Similarity=0.066 Sum_probs=206.3
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
++.||..+|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|++++. +++++.|++|++|
T Consensus 8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~~---~~s~s~D~~v~~w 72 (287)
T d1pgua2 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQE---YSSISWDDTLKVN 72 (287)
T ss_dssp EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTTC---CEEEETTTEEEET
T ss_pred EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCCe---EEEEeeccccccc
Confidence 5899999999999997 999999999999998763 357999999999997764 7999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
++...+ ....+..+++ .+++..++ .+.++.+.+|+..+......+....
T Consensus 73 ~~~~~~-------~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 121 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASA--NNDGFTAV-LTNDDDLLILQSFTGDIIKSVRLNS--------------------- 121 (287)
T ss_dssp TEEEEE-------CSSCEEEEEE--CSSSEEEE-EETTSEEEEEETTTCCEEEEEECSS---------------------
T ss_pred cccccc-------cccceeeeee--ccCCceEE-Eeecccceeeeccceeeeeeccccc---------------------
Confidence 965422 2234555665 34444444 4556778889887766554433221
Q ss_pred CceeEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
...+++++++.+++++.+ +.+++|++...+....+.. .+...+.+++|+|++.+|++|+.||.|++||+.++...
T Consensus 122 ---~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~ 197 (287)
T d1pgua2 122 ---PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT-PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK 197 (287)
T ss_dssp ---CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ---eeeeeeccCcceeeeccccceeeeeeccccceeeeeee-ccCCceeEEEeccCccccccccccccccceeecccccc
Confidence 123445556678877766 4799999987666555543 23346899999999999999999999999998766221
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
...+
T Consensus 198 ~~~~---------------------------------------------------------------------------- 201 (287)
T d1pgua2 198 TSRW---------------------------------------------------------------------------- 201 (287)
T ss_dssp ECCS----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 1111
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
.+|...|.+++|+|++...
T Consensus 202 --------------~~h~~~v~~~~~~p~~~~~----------------------------------------------- 220 (287)
T d1pgua2 202 --------------AFRTSKINAISWKPAEKGA----------------------------------------------- 220 (287)
T ss_dssp --------------CCCSSCEEEEEECCCC--------------------------------------------------
T ss_pred --------------cccccccceeeeccccccc-----------------------------------------------
Confidence 1267788999998877522
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC-CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
..+.+++.++++|+ |++|++||+.+ .+.+..+.+|...|++++|+| ++ .|++++.||.|++|++
T Consensus 221 ----------~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 221 ----------NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp -------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred ----------ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence 22345677899999 99999999976 556777889999999999999 66 5788999999999996
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=1e-26 Score=264.96 Aligned_cols=364 Identities=9% Similarity=0.016 Sum_probs=246.1
Q ss_pred EecCCCe-EEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeE
Q 001318 353 FHPVQQT-LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 431 (1101)
Q Consensus 353 ~spdg~~-llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i 431 (1101)
+++|.+. ++++.+.||+|+|||+.+++.+.+ +..| ..+..++|||||++|++++.|++|
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~v 85 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDARI 85 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCCCE
Confidence 4555443 457788899999999999998874 4445 469999999999999999999999
Q ss_pred EEEEccCCceee--eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCC
Q 001318 432 QIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 509 (1101)
Q Consensus 432 ~iwd~~~~~~~~--~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~ 509 (1101)
++||+.+++... .+....+|.+.+.+++|+|||++ +++++..++.+++||..++.++..+.+|...+..+.+.+.+.
T Consensus 86 ~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (426)
T d1hzua2 86 DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 164 (426)
T ss_dssp EEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred EEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCc
Confidence 999999987432 23334578888889999999995 456777899999999999999999988888777666654433
Q ss_pred ccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-CCCcEEEE
Q 001318 510 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFW 588 (1101)
Q Consensus 510 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iw 588 (1101)
...+..+.|+...+|....................+...+.+ ..+..+.++|++++++++. .+..+.+|
T Consensus 165 -~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~a~~~~~~~~~~ 234 (426)
T d1hzua2 165 -VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA---------PFLADGGWDSSHRYFMTAANNSNKVAVI 234 (426)
T ss_dssp -EEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECC---------SSEEEEEECTTSCEEEEEETTCSEEEEE
T ss_pred -eeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccC---------CccEeeeECCCCcEEEeeeecccceeee
Confidence 345666677776666555433333333222222222222222 2566778888888877765 56779999
Q ss_pred ECCCCceeEEEcCCCCCCCcCeEEEccCCCEEE---EEeCCCcEEEEEecCccccccccccccccccccCCCCCCccccc
Q 001318 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA---VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 665 (1101)
Q Consensus 589 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1101)
+..+++.+................+...+...+ ..+.|+.+.+|+......
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~-------------------------- 288 (426)
T d1hzua2 235 DSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH-------------------------- 288 (426)
T ss_dssp ETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTC--------------------------
T ss_pred ecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccc--------------------------
Confidence 999999888876554433344444444332111 122344555544322200
Q ss_pred chhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEE
Q 001318 666 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 745 (1101)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 745 (1101)
T Consensus 289 -------------------------------------------------------------------------------- 288 (426)
T d1hzua2 289 -------------------------------------------------------------------------------- 288 (426)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEE---
Q 001318 746 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS--- 822 (1101)
Q Consensus 746 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~--- 822 (1101)
.+| .+.... .+. +|...+..++|+||+++|++
T Consensus 289 -----------------~~~-------------------------~~~~~~-~l~--g~~~~v~~v~~sPdg~~l~v~~~ 323 (426)
T d1hzua2 289 -----------------PQY-------------------------AWKKVA-ELQ--GQGGGSLFIKTHPKSSHLYVDTT 323 (426)
T ss_dssp -----------------TTT-------------------------BTSEEE-EEE--CSSSCCCCEECCTTCSEEEECCT
T ss_pred -----------------ccc-------------------------cceEeE-EEe--cCCCceeEEEcCCCCceEEEeec
Confidence 000 000000 011 16666777888888888885
Q ss_pred ----Ee-CCeEEEEECCCCceeeEe---------cCCCCCeEEEEEecCCCcEEE-EE----eccCeEEEEEeecceEee
Q 001318 823 ----AS-GGKISLFNMMTFKTMATF---------MPPPPAATFLAFHPQDNNIIA-IG----MDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 823 ----~s-dg~i~vwd~~~~~~~~~~---------~~~~~~i~~l~~sp~d~~~la-sg----~~dg~v~vwd~~~~~~~~ 883 (1101)
++ +++|+|||+.+++...++ ..+...+.+++||| ||++++ ++ +.+|.|+|||..+++...
T Consensus 324 ~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~ 402 (426)
T d1hzua2 324 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 402 (426)
T ss_dssp TCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETTTTEEEE
T ss_pred CCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECCCCeEEE
Confidence 33 688999999998877654 23456799999999 887664 33 368899999999999999
Q ss_pred eecCcccCeeEEEEcCCCCEEE
Q 001318 884 KLKGHSKRITGLAFSHALNVLV 905 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~dg~~l~ 905 (1101)
.+.++. .++|+|++-+
T Consensus 403 ~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 403 VVKDPR------LITPTGKFNV 418 (426)
T ss_dssp EECCTT------CCSEEEEEEH
T ss_pred EECCCC------ccCCCceEeE
Confidence 888774 3467777643
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.6e-25 Score=240.59 Aligned_cols=234 Identities=18% Similarity=0.295 Sum_probs=185.1
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
.+|...|+|++ +||++ ||||+.||+|+|||+.+++.+. .+.+|.+.|++++| ++++
T Consensus 12 ~~~~~~V~c~~--~d~~~-l~sgs~Dg~i~vWd~~~~~~~~-------------------~l~~H~~~V~~v~~--~~~~ 67 (293)
T d1p22a2 12 SETSKGVYCLQ--YDDQK-IVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERV 67 (293)
T ss_dssp CSSCCCEEEEE--CCSSE-EEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSE
T ss_pred CCCCCCEEEEE--EcCCE-EEEEeCCCeEEEEECCCCcEEE-------------------EEecCCCCEeeeec--ccce
Confidence 35788999865 57885 9999999999999999998876 37899999999887 6889
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce---EEEecCcccC
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAP 498 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~ 498 (1101)
|++|+.|+.|++|++..+..... ...+.. ....+.+... .++++..++.+.+||..+... ...+..|...
T Consensus 68 l~s~s~D~~i~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (293)
T d1p22a2 68 IITGSSDSTVRVWDVNTGEMLNT---LIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140 (293)
T ss_dssp EEEEETTSCEEEEESSSCCEEEE---ECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred eeccccccccccccccccccccc---cccccc--cccccccccc--ceeecccccceeEeeccccccccccccccccccc
Confidence 99999999999999999875542 222222 2334444555 689999999999999887654 4456778888
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|..+.+. . ..+++++.|+.|++||..+.+....+..+...+..+.+ ++..+++
T Consensus 141 v~~~~~~--~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~l~~ 193 (293)
T d1p22a2 141 VNVVDFD--D--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-----------------------RDRLVVS 193 (293)
T ss_dssp EEEEEEE--T--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-----------------------ETTEEEE
T ss_pred cccceec--c--cccccccCCCceeeecCCCCcEEEEEcccccccccccC-----------------------CCCeEEE
Confidence 8877653 3 47889999999999999988777766666555444433 3357999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++.||.|++||+++.+.+..+..+.. .+ ..+++++.+|++++.||.|++||+...
T Consensus 194 ~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 194 GSSDNTIRLWDIECGACLRVLEGHEE--LV--RCIRFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSS--CE--EEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred ecCCCEEEEEecccceeeeeecccce--ee--eeccccceEEEEEcCCCEEEEEECCCC
Confidence 99999999999999999988875543 33 457788999999999999999998765
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=3.1e-27 Score=263.25 Aligned_cols=343 Identities=14% Similarity=0.078 Sum_probs=231.1
Q ss_pred EEEEEec-CCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc
Q 001318 349 MSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 427 (1101)
Q Consensus 349 ~~~~~sp-dg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 427 (1101)
..-.||| ||++ +|+++ +|.|+|||+.++..+. .+|...|.+++|||||++|++++.
T Consensus 6 ~~~~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~ 62 (360)
T d1k32a3 6 FAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGT 62 (360)
T ss_dssp GEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEE
T ss_pred hcccccCCCCCE-EEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEc
Confidence 3467999 9996 77665 4899999998876643 268999999999999999998776
Q ss_pred CC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeee
Q 001318 428 RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 505 (1101)
Q Consensus 428 d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 505 (1101)
+. .|++||.++++..+ +..|...|.+++|+||++ +|++++.++.+++|++.+++....+..|...+.+++|+
T Consensus 63 ~~g~~v~v~d~~~~~~~~----~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 136 (360)
T d1k32a3 63 REGDFLGIYDYRTGKAEK----FEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 136 (360)
T ss_dssp TTEEEEEEEETTTCCEEE----CCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred CCCCEEEEEECCCCcEEE----eeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence 53 79999999987543 778999999999999999 79999999999999999999999999899899888884
Q ss_pred ecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcE
Q 001318 506 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 585 (1101)
Q Consensus 506 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 585 (1101)
++|++|+.++.++.. .+.+..++.+
T Consensus 137 --pdg~~la~~~~~~~~-----------------------------------------------------~~~~~~~~~~ 161 (360)
T d1k32a3 137 --DNSRFIAYGFPLKHG-----------------------------------------------------ETDGYVMQAI 161 (360)
T ss_dssp --TTSCEEEEEEEECSS-----------------------------------------------------TTCSCCEEEE
T ss_pred --cceeeeeeecccccc-----------------------------------------------------ceeeccccce
Confidence 556777765433221 1123445678
Q ss_pred EEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCccccc
Q 001318 586 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 665 (1101)
Q Consensus 586 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1101)
++|++.+++....... ...+..++|+|+|++|++++.++.+.+|+............ ..... .+..
T Consensus 162 ~v~d~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~--~~~~~--------~~~~- 227 (360)
T d1k32a3 162 HVYDMEGRKIFAATTE---NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS--KPFVI--------PLIP- 227 (360)
T ss_dssp EEEETTTTEEEECSCS---SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCB--EEEEE--------ESST-
T ss_pred eeeccccCceeeeccc---ccccccccccCCCCEEEEEeCCCceEcccccccceeecccc--ceEEE--------eccc-
Confidence 8999988876554432 23577899999999999999999999998755421110000 00000 0000
Q ss_pred chhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC---cceeeeccccCCCccccccccCccccccceE
Q 001318 666 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND---KSKVWKLTELSEPNQCRSLRLPENLRATKIS 742 (1101)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 742 (1101)
.......+.+++..+.++..+. ..++|.+.... .....+ ..+...+.
T Consensus 228 ------------------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~ 277 (360)
T d1k32a3 228 ------------------------GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMI----IPLESSIL 277 (360)
T ss_dssp ------------------------TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEE----EECSSEEE
T ss_pred ------------------------CccccceECCCcCcccccceeecccccceeecccCc--CceeEe----eecCCCce
Confidence 0011122233333333332221 12334332111 011111 11223333
Q ss_pred EEEEcC---CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 743 RLIFTN---SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 743 ~l~~s~---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
.+.+.. ++.++++++.++.+++||+. +++... +.+.|.+++|||||++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----------------------~~~~~~-------~~~~v~~~~~SpDG~~ 328 (360)
T d1k32a3 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVK----------------------TRKVTE-------VKNNLTDLRLSADRKT 328 (360)
T ss_dssp EEECCCCCSHHHHHHCCCCCEEEEEEETT----------------------TCCEEE-------EEEEEEEEEECTTSCE
T ss_pred EEEEEecCCCeeEEEecCCCCEEEEEECC----------------------CCeEEE-------ecCCcCEEEECCCCCE
Confidence 344433 33456677778888888763 222211 4556899999999999
Q ss_pred EEEEe-CCeEEEEECCCCceeeEecCCCCC
Q 001318 820 VMSAS-GGKISLFNMMTFKTMATFMPPPPA 848 (1101)
Q Consensus 820 la~~s-dg~i~vwd~~~~~~~~~~~~~~~~ 848 (1101)
|++++ ||.|++||+++++...++..+..+
T Consensus 329 l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~ 358 (360)
T d1k32a3 329 VMVRKDDGKIYTFPLEKPEDERTVETDKRP 358 (360)
T ss_dssp EEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred EEEEECCCeEEEEECCCCCcceEEEecccc
Confidence 99999 899999999999888877655443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=7.5e-26 Score=256.65 Aligned_cols=354 Identities=14% Similarity=0.088 Sum_probs=248.3
Q ss_pred EEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCC
Q 001318 360 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG 439 (1101)
Q Consensus 360 llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~ 439 (1101)
++++.+.||+|.|||..+++.+.. +..| ..+..++|||||++|++++.|++|++||+.++
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~ 93 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred EEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence 468899999999999999999875 4444 36999999999999999999999999999987
Q ss_pred ce--eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC-----------eEEEeeee
Q 001318 440 DE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-----------VYSVCPHH 506 (1101)
Q Consensus 440 ~~--~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-----------v~~v~~~~ 506 (1101)
+. ...+....+|.+.+.+.+|+|||++ ++++++.+++|++||..+++.+..+..|... ...+.++
T Consensus 94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s- 171 (432)
T d1qksa2 94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS- 171 (432)
T ss_dssp SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC-
T ss_pred CceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEEC-
Confidence 63 2333344567788888899999995 4688999999999999999999887765433 3344543
Q ss_pred cCCcc-EEEEEecCCcEEEEecCCCCceeeec-CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-CCC
Q 001318 507 KENIQ-FIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDF 583 (1101)
Q Consensus 507 ~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg 583 (1101)
+++. ++++...++.|.+||..+.+...... .... ....++++|+|+++++++ .++
T Consensus 172 -~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~---------------------~~~~~~~spdg~~~~va~~~~~ 229 (432)
T d1qksa2 172 -HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER---------------------FLHDGGLDGSHRYFITAANARN 229 (432)
T ss_dssp -SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS---------------------SEEEEEECTTSCEEEEEEGGGT
T ss_pred -CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccC---------------------ccccceECCCCCEEEEeccccc
Confidence 3444 45666778899999887654332211 1122 344556666666666655 567
Q ss_pred cEEEEECCCCceeEEEcCCC---CCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 584 SIKFWDMDSVQLLTSIDADG---GLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
.+.++|..+++.+..+.... +........+...+...++.. .++.+.+|......
T Consensus 230 ~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~--------------------- 288 (432)
T d1qksa2 230 KLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG--------------------- 288 (432)
T ss_dssp EEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT---------------------
T ss_pred eEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc---------------------
Confidence 89999999988887775322 111222233333333333332 24556666432210
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 739 (1101)
. ..+..
T Consensus 289 ------------------------------------------------------------------------~--~~~~~ 294 (432)
T d1qksa2 289 ------------------------------------------------------------------------H--PDNAW 294 (432)
T ss_dssp ------------------------------------------------------------------------C--TTTBT
T ss_pred ------------------------------------------------------------------------c--ccccc
Confidence 0 11445
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
.+....+++++..+++++.+...++|..... ..|.....++++ ||++.
T Consensus 295 ~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~-------------------------------~~~~~~~~sv~v-pDg~~ 342 (432)
T d1qksa2 295 KILDSFPALGGGSLFIKTHPNSQYLYVDATL-------------------------------NPEAEISGSVAV-FDIKA 342 (432)
T ss_dssp SEEEEEECSCSCCCCEECCTTCSEEEEECTT-------------------------------CSSHHHHTCEEE-EEGGG
T ss_pred EEEEEEEcCCCCeEEEEecCCccceeecccC-------------------------------CCCCCeeeEEEE-Eechh
Confidence 6778889999988999998888888875211 012223344555 89999
Q ss_pred EEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe-----ccCeEEEEEeecceEeeeecCc
Q 001318 820 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-----DDSSIQIYNVRVDEVKSKLKGH 888 (1101)
Q Consensus 820 la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~-----~dg~v~vwd~~~~~~~~~l~~h 888 (1101)
+++++ |+.+++|++.++.. +..|...+.+++||| ||++|+++. .+|.|.|||..++++...+++.
T Consensus 343 la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 343 MTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp CCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred hcccccCCceEecccccccc---cCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 99998 89999999866533 335667899999999 888776554 4689999999999998887753
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=1.2e-25 Score=254.98 Aligned_cols=363 Identities=9% Similarity=0.011 Sum_probs=250.8
Q ss_pred ecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce--EEEe-
Q 001318 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYIF- 492 (1101)
Q Consensus 416 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~- 492 (1101)
+++.-++++.+.||+|.|||..+++.+.. +..| ..+..++|||||+ ++++++.|++|++||+.+++. +..+
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~---~~~g-~~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~~~~~~~i~ 102 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTV---LDTG-YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIK 102 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEE---EECS-SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEE---EeCC-CCeeEEEECCCCC--EEEEEcCCCCEEEEEeeCCCceEEEEEe
Confidence 34444467889999999999999998774 5445 4699999999999 788899999999999988764 3333
Q ss_pred --cCcccCeEEEeeeecCCccEE-EEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 493 --EGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 493 --~~h~~~v~~v~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
.+|.+.+.+..| ++||++| ++++.+++|++||..+.+....+..+...+....+.++++ ...+.+
T Consensus 103 ~~~~~~~~~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~ 170 (432)
T d1qksa2 103 IGSEARSIETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR----------VAAILA 170 (432)
T ss_dssp CCSEEEEEEECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC----------EEEEEE
T ss_pred cCCCCCCeEEeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCc----------eeEEEE
Confidence 345555555555 5677765 7788899999999999888887776655555555555553 445677
Q ss_pred cCCCCEEE-EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC-CcEEEEEecCccccccccccc
Q 001318 570 DTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDGIRLLRTFENL 647 (1101)
Q Consensus 570 ~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~ 647 (1101)
++++..++ +...++.|.+|+..+++.........+ ..+..++|+|+|+++++++.+ +.+.+++..++ +....+...
T Consensus 171 s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g 248 (432)
T d1qksa2 171 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTG 248 (432)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECS
T ss_pred CCCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc-CccccceECCCCCEEEEeccccceEEEeecccc-eEEEEeccC
Confidence 88887765 466789999999988775543332211 246789999999988877654 56778887665 332222110
Q ss_pred cccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccc
Q 001318 648 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 727 (1101)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 727 (1101)
...
T Consensus 249 ~~~----------------------------------------------------------------------------- 251 (432)
T d1qksa2 249 GQT----------------------------------------------------------------------------- 251 (432)
T ss_dssp SSS-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred cccccCccccccceEEEEEcCCCceEEeee-cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCC
Q 001318 728 RSLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 806 (1101)
Q Consensus 728 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~ 806 (1101)
.+........+...+....+.. .++.+.+|.... .. . ..|..
T Consensus 252 --------~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~----------------------~~-----~--~~~~~ 294 (432)
T d1qksa2 252 --------PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP----------------------EG-----H--PDNAW 294 (432)
T ss_dssp --------BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT----------------------TT-----C--TTTBT
T ss_pred --------cccCcccceecCCCCceecccccCCceEEeccccc----------------------cc-----c--ccccc
Confidence 0111222223333333232222 256677775421 11 1 12566
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee
Q 001318 807 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 885 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l 885 (1101)
.+....+++++..+++++ ++..++|+..+.. .|......+++ | |++.|++++.|+.+++|++.++. .+
T Consensus 295 ~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~---~l 363 (432)
T d1qksa2 295 KILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWA---GI 363 (432)
T ss_dssp SEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHH---TC
T ss_pred EEEEEEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-E-echhhcccccCCceEeccccccc---cc
Confidence 788999999999999988 8999999876533 23333344555 8 89999999999999999987663 33
Q ss_pred cCcccCeeEEEEcCCCCEEEEEe-----CCCceEEEeCCCccc
Q 001318 886 KGHSKRITGLAFSHALNVLVSSG-----ADSQLCVWSSDGWEK 923 (1101)
Q Consensus 886 ~~h~~~V~~l~~s~dg~~l~s~s-----~D~~v~iwd~~~~~~ 923 (1101)
..|...|.+++|||||++|+.+. .++.|+|||..+.+.
T Consensus 364 ~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 364 TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence 45778899999999999886553 468899999999653
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2e-25 Score=245.70 Aligned_cols=293 Identities=11% Similarity=0.074 Sum_probs=213.9
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
++|...|++++|+|++++|++++.||.|+|||+..... ...+.. ..+|...|.+++|+
T Consensus 8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~------------------~~~~~~----~~~h~~~V~~v~f~ 65 (342)
T d1yfqa_ 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK------------------NVDLLQ----SLRYKHPLLCCNFI 65 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT------------------EEEEEE----EEECSSCEEEEEEE
T ss_pred CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc------------------ceEEEE----ecCCCCCEEEEEEe
Confidence 46889999999999999999999999999999843211 001111 11288999999999
Q ss_pred cCC-CEEEEEe-CCeEEEEECCCCceeeEecCCCCCe-EEEEEecCCCcEEEEEeccCeEEEEEeecceEe----eeecC
Q 001318 815 KND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAA-TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK----SKLKG 887 (1101)
Q Consensus 815 ~dg-~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i-~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~----~~l~~ 887 (1101)
+++ .+|++|+ |+.|++|+............+.... ....+.+ +...+++++.|+.+++||+.++... .....
T Consensus 66 ~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~ 144 (342)
T d1yfqa_ 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred CCCCCEEEEcccccceeeeeccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeeccccc
Confidence 875 5788888 9999999999888777766555444 4455556 7889999999999999998764322 22222
Q ss_pred c--ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEE-cCCCcEEEE-EeCCeEE
Q 001318 888 H--SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF-HQDQIHFLV-VHETQLA 963 (1101)
Q Consensus 888 h--~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~dg~~la~-~~d~~v~ 963 (1101)
+ ......+.+.+++..+++++.|+.|++|++................ ..+....+ ..++..+++ +.|+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~~ 219 (342)
T d1yfqa_ 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK-----YQIRDVALLPKEQEGYACSSIDGRVA 219 (342)
T ss_dssp SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS-----SCEEEEEECSGGGCEEEEEETTSEEE
T ss_pred ccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccc-----cceeeeEeecCCCCEEEeecCCCeEE
Confidence 2 2334566778889999999999999999998766443332222211 23444444 456667777 6899999
Q ss_pred EEEcCCceeeee-------------ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCC
Q 001318 964 IFETTKLECVKQ-------------WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1030 (1101)
Q Consensus 964 vwd~~~~~~~~~-------------~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
+|+......... ....+|...|++++|+|++++|++|+.||.|+|||+.+++.+..+. .+|
T Consensus 220 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~------~~~ 293 (342)
T d1yfqa_ 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA------KFN 293 (342)
T ss_dssp EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC------CCS
T ss_pred EEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec------CCC
Confidence 999765432211 1123567789999999999999999999999999999999988765 111
Q ss_pred CCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCC
Q 001318 1031 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1031 ~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
... .++|+| +++++++++.|+.+++|.....
T Consensus 294 ---~~~--~~~~s~-~~~~l~~a~sdd~~~~~~~~~~ 324 (342)
T d1yfqa_ 294 ---EDS--VVKIAC-SDNILCLATSDDTFKTNAAIDQ 324 (342)
T ss_dssp ---SSE--EEEEEE-CSSEEEEEEECTHHHHCSSSCT
T ss_pred ---CCE--EEEEEe-CCCEEEEEEcCCcEEEeeeeCC
Confidence 123 466777 5789999999999988876443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=2.6e-26 Score=255.76 Aligned_cols=284 Identities=9% Similarity=0.012 Sum_probs=207.7
Q ss_pred cccceEEEEEcCCCceEEeeecC--ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 737 RATKISRLIFTNSGNAILALASN--AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
|...|.+++|+|||+.|++++.+ ..+++|+. .++.... + ..|...+.+++|+
T Consensus 41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~----------------------~~~~~~~--~--~~~~~~v~~~~~s 94 (360)
T d1k32a3 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY----------------------RTGKAEK--F--EENLGNVFAMGVD 94 (360)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTEEEEEEEET----------------------TTCCEEE--C--CCCCCSEEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEEC----------------------CCCcEEE--e--eCCCceEEeeeec
Confidence 66789999999999999887765 36777776 3333322 1 2388899999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe----------ccCeEEEEEeecceEee
Q 001318 815 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~----------~dg~v~vwd~~~~~~~~ 883 (1101)
|||++|++++ ++.+++|++.+++....+..|...+.+++|+| |+++||.+. .++.+++||+.+++...
T Consensus 95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~ 173 (360)
T d1k32a3 95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA 173 (360)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred ccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee
Confidence 9999999998 89999999999999999999999999999999 899998654 45579999999887654
Q ss_pred eecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccccee--eecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC-
Q 001318 884 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE- 959 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d- 959 (1101)
. ..|...+..++|+|||++|++++.|+.+++|+........... ......+. ..+..+.|++++..++.+ .+
T Consensus 174 ~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~ 249 (360)
T d1k32a3 174 A-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDL 249 (360)
T ss_dssp C-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCC
T ss_pred e-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEeccc---CccccceECCCcCcccccceee
Confidence 4 4466778999999999999999999999999976643211100 00011111 234455677887766652 11
Q ss_pred ----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC---CCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCC
Q 001318 960 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSC---DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1032 (1101)
Q Consensus 960 ----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp---dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1032 (1101)
..+..++...+...... .+.+.+..+.+.+ ++.++++++.++.|++||+.+++.... . +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~-------~--- 315 (360)
T d1k32a3 250 NDMYKRSSPINVDPGDYRMII---PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-K-------N--- 315 (360)
T ss_dssp TTGGGGCEECSCCCBCEEEEE---ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE-E-------E---
T ss_pred cccccceeecccCcCceeEee---ecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe-c-------C---
Confidence 23444455555443322 2234445555444 445688889999999999998875421 1 1
Q ss_pred CCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 1033 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1033 ~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
.+. +++|+| ||++|++++.||.|++||+.+++.
T Consensus 316 -~v~--~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 316 -NLT--DLRLSA-DRKTVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp -EEE--EEEECT-TSCEEEEEETTSCEEEEESSCTTS
T ss_pred -CcC--EEEECC-CCCEEEEEECCCeEEEEECCCCCc
Confidence 144 899999 899999999999999999999883
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=4.5e-24 Score=242.94 Aligned_cols=365 Identities=9% Similarity=0.035 Sum_probs=242.1
Q ss_pred EEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec
Q 001318 458 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 537 (1101)
Q Consensus 458 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 537 (1101)
..++.|.+.+++++.+.|++|+|||+.+++.+.++..|. .+..++| ++||+++++++.|++|++||+.+.+......
T Consensus 24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vaf--SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~ 100 (426)
T d1hzua2 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAE 100 (426)
T ss_dssp CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEE--CCCCCEEEEEeCCCCEEEEEccCCceeEEEE
Confidence 446777777678999999999999999999999998774 5888987 5677999999999999999999877544322
Q ss_pred CC-CCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 538 AP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 538 ~~-~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
.. ......+. ..++|+|||+++++ +..++.+++||..++.++..+..+.. .+..+.+.+
T Consensus 101 i~~~~~~~~~~-----------------~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~ 161 (426)
T d1hzua2 101 IKIGIEARSVE-----------------SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYHP 161 (426)
T ss_dssp EECCSEEEEEE-----------------ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEES
T ss_pred EeCCCCCcceE-----------------EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--CccceeecC
Confidence 11 11111121 22345566667655 55899999999999999888876544 466677777
Q ss_pred CCCE-EEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCc
Q 001318 616 DGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGD 694 (1101)
Q Consensus 616 ~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1101)
++.. .++.+.|+...++.....
T Consensus 162 ~~~~~~i~~s~d~~~~~~~~~~~--------------------------------------------------------- 184 (426)
T d1hzua2 162 EPRVAAIIASHEHPEFIVNVKET--------------------------------------------------------- 184 (426)
T ss_dssp CCCEEEEEECSSSSEEEEEETTT---------------------------------------------------------
T ss_pred CCceeEEEECCCCCEEEEecCCC---------------------------------------------------------
Confidence 7764 445566666655543322
Q ss_pred cccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCC
Q 001318 695 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 774 (1101)
Q Consensus 695 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 774 (1101)
+.+.+++... +..+. +..
T Consensus 185 ----------------~~i~~~~~~~-----------------------------~~~~~---------~~~-------- 202 (426)
T d1hzua2 185 ----------------GKVLLVNYKD-----------------------------IDNLT---------VTS-------- 202 (426)
T ss_dssp ----------------TEEEEEECSS-----------------------------SSSCE---------EEE--------
T ss_pred ----------------CeEEEEEecc-----------------------------cccee---------eEE--------
Confidence 0111111000 00000 000
Q ss_pred CCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCC--CCCeE
Q 001318 775 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPP--PPAAT 850 (1101)
Q Consensus 775 ~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~--~~~i~ 850 (1101)
.++...+..++++|++++++++. +..+.+++..+++.+...... .....
T Consensus 203 ---------------------------~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (426)
T d1hzua2 203 ---------------------------IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 255 (426)
T ss_dssp ---------------------------EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSC
T ss_pred ---------------------------eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccc
Confidence 01455577788888888888876 467889998888877665432 22233
Q ss_pred EEEEecCCCcEE--EEEeccCeEEEEEeec-------ceEeeeecCcccCeeEEEEcCCCCEEEE-------EeCCCceE
Q 001318 851 FLAFHPQDNNII--AIGMDDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVS-------SGADSQLC 914 (1101)
Q Consensus 851 ~l~~sp~d~~~l--asg~~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s-------~s~D~~v~ 914 (1101)
...+.......+ +..+.|+.+.+|+... ++....+.+|...+..++|+||+++|++ ++.|++|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~ 335 (426)
T d1hzua2 256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 335 (426)
T ss_dssp CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEE
T ss_pred eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEE
Confidence 344433122222 2334577888887654 4778889999999999999999999994 55689999
Q ss_pred EEeCCCccccccee-eecCCCCCCCCCCCeEEEEcCCCcEEEEE------eCCeEEEEEcCCceeeeeccCCCCCCCeeE
Q 001318 915 VWSSDGWEKQKNRF-LQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVKQWVPRESSAPITH 987 (1101)
Q Consensus 915 iwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~la~~------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~ 987 (1101)
|||+.+++...... .....++......+.+++|||||++++++ .++.|+|||..+++....+. ++.
T Consensus 336 vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~--~~~----- 408 (426)
T d1hzua2 336 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK--DPR----- 408 (426)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC--CTT-----
T ss_pred EEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC--CCC-----
Confidence 99999876433211 11111111122468889999999987542 36789999999999887765 221
Q ss_pred EEEcCCCCEEE
Q 001318 988 ATFSCDSQLVY 998 (1101)
Q Consensus 988 l~~spdg~~l~ 998 (1101)
.++|+|+|-+
T Consensus 409 -~~tp~Gk~~~ 418 (426)
T d1hzua2 409 -LITPTGKFNV 418 (426)
T ss_dssp -CCSEEEEEEH
T ss_pred -ccCCCceEeE
Confidence 4467887743
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=2.9e-21 Score=212.02 Aligned_cols=292 Identities=11% Similarity=0.079 Sum_probs=200.8
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEE-EEeCCCcEEEEEecCcccccccccccccccc
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGIKILATSDGIRLLRTFENLAYDAS 652 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 652 (1101)
+++++++.|++|++||+.+++.+..+..+.....+.+++|+|||++++ +++.++.|.+||+.++ +.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~--- 77 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTP--- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBT---
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCC---
Confidence 479999999999999999999999998766555678999999999875 5677899999999988 44333321110
Q ss_pred ccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccccc
Q 001318 653 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 732 (1101)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 732 (1101)
T Consensus 78 -------------------------------------------------------------------------------- 77 (337)
T d1pbyb_ 78 -------------------------------------------------------------------------------- 77 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEE
Q 001318 733 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 812 (1101)
Q Consensus 733 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~ 812 (1101)
..+...+..++|+|+++.++++..+.....|..
T Consensus 78 --~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~--------------------------------------------- 110 (337)
T d1pbyb_ 78 --EERVKSLFGAALSPDGKTLAIYESPVRLELTHF--------------------------------------------- 110 (337)
T ss_dssp --TEEEECTTCEEECTTSSEEEEEEEEEEECSSCE---------------------------------------------
T ss_pred --cccccceeeEEEcCCCcEEEEeecCCcceeeec---------------------------------------------
Confidence 002233446889999998888877655444322
Q ss_pred EecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCe
Q 001318 813 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 892 (1101)
Q Consensus 813 ~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V 892 (1101)
...+..+.+||..+++....+.. ...+..++|+| +++++++++. .+.+||..+++....+..+...
T Consensus 111 ---------~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~- 176 (337)
T d1pbyb_ 111 ---------EVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE- 176 (337)
T ss_dssp ---------EECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-
T ss_pred ---------cccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-
Confidence 11145566677766666666553 33466667777 6666666543 3556776666655554332211
Q ss_pred eEEEEcC------------------------CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEc
Q 001318 893 TGLAFSH------------------------ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 948 (1101)
Q Consensus 893 ~~l~~s~------------------------dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 948 (1101)
....+++ +...+..++.++.+.+|+..++.......... . ..+..++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~ 249 (337)
T d1pbyb_ 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM----D---VFYFSTAVN 249 (337)
T ss_dssp TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC----S---SCEEEEEEC
T ss_pred ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC----C---cceEEEEec
Confidence 1111111 11122223334568889888765432222111 1 256788999
Q ss_pred CCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 949 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 949 ~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+++.+++.. ++.+++||+.+++.+..+. +...+.+++|+|||++|++++.|+.|+|||..+++.+.+++
T Consensus 250 ~~~~~~~~~-~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 250 PAKTRAFGA-YNVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp TTSSEEEEE-ESEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred ccceEEEEc-cccEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence 999988654 5899999999999998875 35678999999999999999999999999999999999887
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=9.1e-21 Score=207.98 Aligned_cols=313 Identities=9% Similarity=0.038 Sum_probs=210.6
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC-
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP- 498 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~- 498 (1101)
+||++++.|++|+|||+++++.+..+ .+..+...+.+++|+|||+. ++++++.++.|.+||+.+++.+..+..+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 58999999999999999999876633 33445567889999999995 4567888999999999999999888765433
Q ss_pred ----eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCC
Q 001318 499 ----VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 574 (1101)
Q Consensus 499 ----v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1101)
+..++| ++++.+++++..+.....|
T Consensus 80 ~~~~~~~v~~--s~dg~~l~~~~~~~~~~~~------------------------------------------------- 108 (337)
T d1pbyb_ 80 RVKSLFGAAL--SPDGKTLAIYESPVRLELT------------------------------------------------- 108 (337)
T ss_dssp EEECTTCEEE--CTTSSEEEEEEEEEEECSS-------------------------------------------------
T ss_pred cccceeeEEE--cCCCcEEEEeecCCcceee-------------------------------------------------
Confidence 233444 3555666666554433322
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccccccc
Q 001318 575 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 654 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 654 (1101)
.....+..+.+||..+++....+.... .+.+++|+|+|+++++++. .+.+||..++ +....+..+....
T Consensus 109 --~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~-~~~~~~~~~~~~~--- 177 (337)
T d1pbyb_ 109 --HFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR--DLHVMDPEAG-TLVEDKPIQSWEA--- 177 (337)
T ss_dssp --CEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS--SEEEEETTTT-EEEEEECSTTTTT---
T ss_pred --eccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC--CcceeeeecC-cEEEEeecCCccc---
Confidence 123346788999999999988887544 3778999999999999864 5788998877 3433332211110
Q ss_pred CCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCc
Q 001318 655 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 734 (1101)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 734 (1101)
.....+++..+.......
T Consensus 178 ---------------------------------------~~~~~~~~~~~~~~~~~~----------------------- 195 (337)
T d1pbyb_ 178 ---------------------------------------ETYAQPDVLAVWNQHESS----------------------- 195 (337)
T ss_dssp ---------------------------------------TTBCCCBCCCCCCCCTTT-----------------------
T ss_pred ---------------------------------------cceecCCcceeecccccc-----------------------
Confidence 000111111111110000
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
+...+.......+.........++.+.+|+. .++......... +...+..++++
T Consensus 196 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~--~~~~~~~~~~~ 249 (337)
T d1pbyb_ 196 --GVMATPFYTARKDIDPADPTAYRTGLLTMDL----------------------ETGEMAMREVRI--MDVFYFSTAVN 249 (337)
T ss_dssp --TEEEEEEEEEBTTSCTTSGGGEEEEEEEEET----------------------TTCCEEEEEEEE--CSSCEEEEEEC
T ss_pred --ceeeeeeeeeeeccceeeecccCccEEEEEc----------------------CCCcEEEEEecC--CCcceEEEEec
Confidence 1111112222233333444444556666654 333322221211 56678889999
Q ss_pred cCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecC
Q 001318 815 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 887 (1101)
Q Consensus 815 ~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 887 (1101)
+++.+++++ ++.|++||+.+++.+..+. +...+.+++|+| ||++|++++.||.|+|||..+++.+.+++-
T Consensus 250 ~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 250 PAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred ccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 999988655 5899999999999998886 566789999999 999999999999999999999998888754
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=1.9e-21 Score=214.35 Aligned_cols=325 Identities=10% Similarity=0.007 Sum_probs=213.7
Q ss_pred EEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE
Q 001318 413 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 491 (1101)
Q Consensus 413 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 491 (1101)
++|+++++||++++.|++|.+||+++++.++ ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence 5789999999999999999999999998765 333 45667899999999995 457888899999999999999887
Q ss_pred ecCccc------CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 492 FEGHEA------PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 492 ~~~h~~------~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
+..... .+..++| ++||++++.++.+.....
T Consensus 78 ~~~~~~~~~~~~~~~~v~~--s~DG~~l~v~~~~~~~~~----------------------------------------- 114 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLN----------------------------------------- 114 (346)
T ss_dssp EESCCSTTEEEECSSCEEE--CTTSSEEEEEEEEEEECS-----------------------------------------
T ss_pred ecccccccccCCceEEEEE--ecCCCEEEEEecCCccee-----------------------------------------
Confidence 653222 1223343 344455554443222211
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccc
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
......++.+.+|+..+++....+..+.....+..+.+++++++++. ++.+.+|++.++ +....+.
T Consensus 115 ----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~ 180 (346)
T d1jmxb_ 115 ----------DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTG-KYTVALP 180 (346)
T ss_dssp ----------SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTC-CEEEEEC
T ss_pred ----------eeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCC-CEEEEEe
Confidence 12234577888999888775544432222234666788888877664 356889998877 4444433
Q ss_pred cccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCcccee-eccCCCcceeeeccccCCC
Q 001318 646 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI-TEESNDKSKVWKLTELSEP 724 (1101)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~w~~~~~~~~ 724 (1101)
.+... ....+.+++..+. ....++.+.+++..
T Consensus 181 ~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 213 (346)
T d1jmxb_ 181 LRNWN------------------------------------------RKGYSAPDVLYFWPHQSPRHEFSMLYTI----- 213 (346)
T ss_dssp STTCC------------------------------------------CTTBCCCBCCCCCCCCCTTCEEEEEEEE-----
T ss_pred cCCCc------------------------------------------cceEEeccccEEEEEecCCCceEeeeee-----
Confidence 22111 1112223333332 22223333333321
Q ss_pred ccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCC
Q 001318 725 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 804 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~ 804 (1101)
..+......+.+...++.+.+|++. ++......... +
T Consensus 214 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~--~ 250 (346)
T d1jmxb_ 214 -------------------ARFKDDKQDPATADLLYGYLSVDLK----------------------TGKTHTQEFAD--L 250 (346)
T ss_dssp -------------------EEC-------CCCEEEEEEEEEETT----------------------TCCEEEEEEEE--C
T ss_pred -------------------eeeccCceeEeeccCCceEEEEECC----------------------CCceEEEEeec--c
Confidence 1122233334555556667777653 33322222222 6
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 805 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
...+..+.+++++.+++...++.|.+||..+++.+..+. +...+.+++|+| ||++|++++.||.|+|||+.+++.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~ 328 (346)
T d1jmxb_ 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKN 328 (346)
T ss_dssp SSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred cceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEE
Confidence 677889999999999998888899999999999988876 455799999999 899999999999999999999999998
Q ss_pred ecCccc
Q 001318 885 LKGHSK 890 (1101)
Q Consensus 885 l~~h~~ 890 (1101)
++.+.+
T Consensus 329 i~~p~g 334 (346)
T d1jmxb_ 329 IKLPGG 334 (346)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 875444
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=5.3e-20 Score=198.15 Aligned_cols=199 Identities=13% Similarity=0.104 Sum_probs=153.1
Q ss_pred eeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEE-EEEeccCeEEEEEeecceEeee
Q 001318 808 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~ 884 (1101)
+..+++++++.++++.. ++.+.+|+..+++....+..+ ....+++|+| +++.+ +++..++.+.+|+..+++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (301)
T d1l0qa2 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINT 153 (301)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeec-CCCeeeeeeccccceeeeeccccceeee
Confidence 45566777777666554 578999999998888887744 5678999999 66554 5666788999999999998888
Q ss_pred ecCcccCeeEEEEcCCCCEEEEEeCC-CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-Ee---C
Q 001318 885 LKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH---E 959 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~---d 959 (1101)
+..+ ..+..+++++++..+++++.+ +.+.+|+....+.. ...... ..+..++|++++..+++ +. +
T Consensus 154 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~g~~~~v~~~~~~~ 223 (301)
T d1l0qa2 154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVE----AAPSGIAVNPEGTKAYVTNVDKYF 223 (301)
T ss_dssp EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECS----SEEEEEEECTTSSEEEEEEECSSC
T ss_pred cccC-CCceEEEeeccccceeeecccccccccccccceeee-----eccccc----CCcceeecccccccccccccccee
Confidence 7755 447889999999988887765 55667776664321 111111 24678999999998876 33 3
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEE-EEEEcCCeEEEEEcCCceeeeecC
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV-YACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l-~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.|.+||+.+++.+..+.. ...+.+++|||||++| ++++.|++|++||+.+++.+.++.
T Consensus 224 ~~v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp CEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eeeeeeecCCCeEEEEEcC---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 6899999999999887753 4568999999999987 567789999999999999998876
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=1.5e-21 Score=215.16 Aligned_cols=330 Identities=10% Similarity=-0.004 Sum_probs=221.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEE-EEeCCCcEEEEEecCcccccccccc
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGIKILATSDGIRLLRTFEN 646 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~ 646 (1101)
+++++++++++++.+++|.+||+.+++.+.++..... ..+.+++|+|||++++ ++..++.|++||+.++ +....+..
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~~ 80 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANL 80 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEES
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeecc
Confidence 5677788999999999999999999999998874332 2467899999999875 4557899999999887 33332211
Q ss_pred ccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcc
Q 001318 647 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 726 (1101)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 726 (1101)
....
T Consensus 81 ~~~~---------------------------------------------------------------------------- 84 (346)
T d1jmxb_ 81 SSVP---------------------------------------------------------------------------- 84 (346)
T ss_dssp CCST----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCC
Q 001318 727 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 806 (1101)
Q Consensus 727 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~ 806 (1101)
..+...+..++|+|||+++++++.+.....|.... ....+.+|+..++....... ......
T Consensus 85 --------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~-~~~~~~ 145 (346)
T d1jmxb_ 85 --------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPVR-TFPMPR 145 (346)
T ss_dssp --------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCSE-EEECCS
T ss_pred --------cccCCceEEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEEE-eeeccC
Confidence 00122345678899999887776543333222110 00112234444443222110 001234
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcE-EEEEeccCeEEEEEeecceEeeee
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI-IAIGMDDSSIQIYNVRVDEVKSKL 885 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~-lasg~~dg~v~vwd~~~~~~~~~l 885 (1101)
.+..+.++++++.++. ++.+.+|++.+++.+..+..+. ....+.++| ++.. ++.+..++.+.+++..
T Consensus 146 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------- 213 (346)
T d1jmxb_ 146 QVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAP-DVLYFWPHQSPRHEFSMLYTI-------- 213 (346)
T ss_dssp SCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCC-BCCCCCCCCCTTCEEEEEEEE--------
T ss_pred ceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecCC-CccceEEec-cccEEEEEecCCCceEeeeee--------
Confidence 4566777778776654 4568999999999988887543 456677888 5544 4444555666666532
Q ss_pred cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEE
Q 001318 886 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 965 (1101)
Q Consensus 886 ~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vw 965 (1101)
..+......++++..+..+.+|++.++......... +. ..+..+.+++++.+++...++.+.+|
T Consensus 214 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~v~v~ 277 (346)
T d1jmxb_ 214 ---------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIYGVLNRLAKY 277 (346)
T ss_dssp ---------EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEEEEESEEEEE
T ss_pred ---------eeeccCceeEeeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEEecCCeEEEE
Confidence 122334455666777788999999886643322111 11 25678899999999988777899999
Q ss_pred EcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCC
Q 001318 966 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1029 (1101)
Q Consensus 966 d~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 1029 (1101)
|..+++.+..+.. ...+.+++|||||++|++++.|+.|+|||+.+++.+.+++ +|.|
T Consensus 278 d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~----~p~g 334 (346)
T d1jmxb_ 278 DLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK----LPGG 334 (346)
T ss_dssp ETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE----CSSS
T ss_pred ECCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE----CCCC
Confidence 9999999887753 4579999999999999999999999999999999999988 5555
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=1.9e-19 Score=193.67 Aligned_cols=264 Identities=16% Similarity=0.152 Sum_probs=201.0
Q ss_pred EEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEE-e-CCeEEE
Q 001318 753 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISL 830 (1101)
Q Consensus 753 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~-s-dg~i~v 830 (1101)
.++.+.++.|.+||+. +++++... . ....+..++|+|||++|+++ . ++.|++
T Consensus 5 yV~~~~~~~v~v~D~~----------------------t~~~~~~i-~---~g~~p~~va~spdG~~l~v~~~~~~~i~v 58 (301)
T d1l0qa2 5 YIANSESDNISVIDVT----------------------SNKVTATI-P---VGSNPMGAVISPDGTKVYVANAHSNDVSI 58 (301)
T ss_dssp EEEETTTTEEEEEETT----------------------TTEEEEEE-E---CSSSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred EEEECCCCEEEEEECC----------------------CCeEEEEE-E---CCCCceEEEEeCCCCEEEEEECCCCEEEE
Confidence 3456678899988863 34333221 1 23457899999999988654 4 799999
Q ss_pred EECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE-EEeC
Q 001318 831 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV-SSGA 909 (1101)
Q Consensus 831 wd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~-s~s~ 909 (1101)
||+.+++.+.++..+. .+..++|++++..+++++..++.+.+|+..+++....+..+ ....+++|+|||..++ ++..
T Consensus 59 ~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~ 136 (301)
T d1l0qa2 59 IDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNG 136 (301)
T ss_dssp EETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETT
T ss_pred EECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeecc
Confidence 9999999999988665 47899999944445666677889999999999988888755 4578899999998875 5556
Q ss_pred CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCceeeeeccCCCCCCCeeE
Q 001318 910 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITH 987 (1101)
Q Consensus 910 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~ 987 (1101)
++.+.+|+..+...... ...+ ..+..++++|+++.++++ .++.+.+|+....+....... ...+..
T Consensus 137 ~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 204 (301)
T d1l0qa2 137 DKTVSVINTVTKAVINT-----VSVG----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSG 204 (301)
T ss_dssp TTEEEEEETTTTEEEEE-----EECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEE
T ss_pred ccceeeeeccccceeee-----cccC----CCceEEEeeccccceeeecccccccccccccceeeeecccc---cCCcce
Confidence 88899999988653221 1111 256889999999998884 456788899888877766542 456789
Q ss_pred EEEcCCCCEEEEEEc---CCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEE-EEEecCCcEEEEe
Q 001318 988 ATFSCDSQLVYACFL---DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF-ALGLSDGGVHVFE 1063 (1101)
Q Consensus 988 l~~spdg~~l~s~s~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l-~s~~~dg~v~vW~ 1063 (1101)
++|++++..++++.. +++|++||+.+++.+..+.. + -.+..++|+| ||++| ++++.|++|++||
T Consensus 205 ~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~------~-----~~~~~va~sp-dg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV------G-----PDPAGIAVTP-DGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC------C-----SSEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred eeccccccccccccccceeeeeeeeecCCCeEEEEEcC------C-----CCEEEEEEeC-CCCEEEEEECCCCeEEEEE
Confidence 999999998876654 46799999999999887651 1 1234899999 67765 6888899999999
Q ss_pred ccCCC
Q 001318 1064 PLESE 1068 (1101)
Q Consensus 1064 ~~~~~ 1068 (1101)
+.+++
T Consensus 273 ~~t~~ 277 (301)
T d1l0qa2 273 TATNT 277 (301)
T ss_dssp TTTTE
T ss_pred CCCCe
Confidence 99988
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.85 E-value=2.6e-18 Score=191.31 Aligned_cols=164 Identities=9% Similarity=-0.019 Sum_probs=120.1
Q ss_pred cCCCCcEEEEEecCCCeEEEEE----ecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
.+..++.+++++|||++++++. +.++.|.+||..+++.+.. +..+.. ..++||||
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~SpD 76 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAHS 76 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcCC
Confidence 4778899999999999866553 2346799999999988764 333332 36999999
Q ss_pred CCeEEEEE----------cCCeEEEEEccCCceeeeeeeeccccCC-------eeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 419 GSLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDAHVGG-------VNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 419 g~~las~~----------~d~~i~iwd~~~~~~~~~~~~l~~h~~~-------V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
|++|++++ .++.|.+||..+++.+.. +..+... ...+.|++|++.+++.....++.+.+|
T Consensus 77 G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~ 153 (373)
T d2madh_ 77 GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred CCEEEEEeecCCcccccccceEEEEEECCCCcEEEE---EecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence 99999875 457899999999987653 3333332 256889999997556666677889999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceee
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 535 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 535 (1101)
+..+++...... ...++.++++.. ..+++.+.|+.+.+|+.........
T Consensus 154 ~~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~ 202 (373)
T d2madh_ 154 VQGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAG 202 (373)
T ss_pred eccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEE
Confidence 988877665443 345566655443 4667889999999999887655443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=8.9e-18 Score=185.44 Aligned_cols=206 Identities=11% Similarity=0.006 Sum_probs=133.0
Q ss_pred cEEEEEecCCCeEEEEE----ecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 348 PMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 348 v~~~~~spdg~~llatg----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
+.-.+.+|||++++++. ..++.|.+||..+++.+.+ +..+ .+..++|||||++|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l~ 62 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFIA 62 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEEE
Confidence 34446789999865554 2356799999999988764 2222 334799999999998
Q ss_pred EEE----------cCCeEEEEEccCCceeeeeeeecccc----CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE
Q 001318 424 VAY----------SRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 489 (1101)
Q Consensus 424 s~~----------~d~~i~iwd~~~~~~~~~~~~l~~h~----~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 489 (1101)
+++ .|+.|++||..+++.+........+. .....++|+++++.++++..+.+..+.+||..+++.+
T Consensus 63 v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~ 142 (355)
T d2bbkh_ 63 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 142 (355)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred EEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEe
Confidence 753 47899999999998776443322222 2346789999999755556677889999999999999
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
..+..+..... + +... ...++.+.|+...++................. ......+....+
T Consensus 143 ~~~~~~~~~~~---~-~~~~-~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 202 (355)
T d2bbkh_ 143 RMLDVPDCYHI---F-PTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH---------------PEDEFLINHPAY 202 (355)
T ss_dssp EEEECCSEEEE---E-EEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCS---------------CTTSCBCSCCEE
T ss_pred eEEecCCcceE---e-ecCC-cceEEEcCCCCEEEEEecCCCeEEEEeccccc---------------ceecceeeeccc
Confidence 88765443221 1 1111 34556666777766655443332222111100 000112233445
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQ 594 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~ 594 (1101)
.+++..++.++.++.+++|++..++
T Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~~~~ 227 (355)
T d2bbkh_ 203 SQKAGRLVWPTYTGKIHQIDLSSGD 227 (355)
T ss_dssp ETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred cCCCCeEEEecCCCeEEEEecCCCc
Confidence 5666678888999999999987654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.78 E-value=1.6e-16 Score=176.57 Aligned_cols=307 Identities=8% Similarity=-0.065 Sum_probs=206.7
Q ss_pred ceeEEEEcCCCCEEEEE-----eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC----------CC
Q 001318 563 SLGVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----------DN 627 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg 627 (1101)
++..++++|+++.+++. +..+.|++||..+++.+..+.... ...++|+|||++|++++. ++
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~----~~~~a~SpDG~~l~va~~~~~~~~~~~~~~ 97 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----LPNPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC----CccEEEcCCCCEEEEEeecCCcccccccce
Confidence 44445555555566553 245679999999999999886442 336999999999998753 56
Q ss_pred cEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeec
Q 001318 628 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 707 (1101)
Q Consensus 628 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 707 (1101)
.|.+||..++ +....+..+.... ..
T Consensus 98 ~v~v~D~~t~-~~~~~~~~~~~~~----------------------------------------------------~~-- 122 (373)
T d2madh_ 98 YVEVFDPVTF-LPIADIELPDAPR----------------------------------------------------FD-- 122 (373)
T ss_pred EEEEEECCCC-cEEEEEecCCcce----------------------------------------------------eE--
Confidence 7899998877 4333332211100 00
Q ss_pred cCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeec--CceEEeeeccccccCCCCceeeeecCc
Q 001318 708 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQ 785 (1101)
Q Consensus 708 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~ 785 (1101)
-......+.|+++++.++.... ++.+.+|+.
T Consensus 123 -----------------------------~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~------------------ 155 (373)
T d2madh_ 123 -----------------------------VGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQ------------------ 155 (373)
T ss_pred -----------------------------eccCCCcEEEEeCCCcEEEEEEcCCCceEEeec------------------
Confidence 0011235678888887665543 345555554
Q ss_pred cccCCCccccccccCCCCCCCCeeEEEEecCCCEEE-EEe-CCeEEEEECCCCceeeEecCC------CCCeEEEEEecC
Q 001318 786 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQ 857 (1101)
Q Consensus 786 lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la-~~s-dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~ 857 (1101)
..+.... +.....++.++++|+.++ +.+ |+++.+|+..++........+ ......+.+++
T Consensus 156 ----~~~~~~~-------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (373)
T d2madh_ 156 ----GGSSDDQ-------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK- 223 (373)
T ss_pred ----cCCeEEE-------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-
Confidence 2322222 344567889999998665 444 899999999988777665432 22234455665
Q ss_pred CCcEEEEEeccCeEEEEEeecceE--eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC
Q 001318 858 DNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR 935 (1101)
Q Consensus 858 d~~~lasg~~dg~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 935 (1101)
++.+ +..+.++.+++|+..++.. ...+..+......+.+.|.+...+..+.|+....+-
T Consensus 224 ~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------------------ 284 (373)
T d2madh_ 224 SGRI-VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL------------------ 284 (373)
T ss_pred CceE-EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEe------------------
Confidence 5544 4566789999999887653 344555666677777877777777777776543332
Q ss_pred CCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCE--EEEEEcCCeEEEEEcC
Q 001318 936 TPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL--VYACFLDATVCVFSAA 1012 (1101)
Q Consensus 936 ~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~--l~s~s~dg~v~vwd~~ 1012 (1101)
..++..++. ..++.+.+||..+++.+..+. +...+.+++|||||+. +++++.|++|+|||+.
T Consensus 285 ------------~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 285 ------------TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred ------------cCCCceEEeecCCCeEEEEECCCCcEEEEec---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence 222333444 577899999999999988774 4567999999999984 4678899999999999
Q ss_pred CceeeeecC
Q 001318 1013 NLKLRCRIN 1021 (1101)
Q Consensus 1013 ~~~~~~~~~ 1021 (1101)
+|+.+.++.
T Consensus 350 tg~~~~~~~ 358 (373)
T d2madh_ 350 AGDQDQSTV 358 (373)
T ss_pred CCCEEEEEC
Confidence 999999887
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=6.7e-17 Score=176.37 Aligned_cols=287 Identities=10% Similarity=0.106 Sum_probs=190.9
Q ss_pred ceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeec-CceEEeeeccccccCCCCceeee
Q 001318 703 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATAS 781 (1101)
Q Consensus 703 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 781 (1101)
.+++++.+++|++|++...........+ .+...+..++|+|||++|++++. ++.|++|++.....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-----~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~--------- 71 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG--------- 71 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC---------
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEE-----cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC---------
Confidence 4577788999999999864433333322 26678999999999999866665 79999998743211
Q ss_pred ecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeE--ecCCCCCeEEEEEecC
Q 001318 782 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQ 857 (1101)
Q Consensus 782 ~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~ 857 (1101)
....... ..+...+..++|+|||++|++++ ++.|.+|+......... ...+...+.++.|+|
T Consensus 72 -----------~~~~~~~--~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~- 137 (333)
T d1ri6a_ 72 -----------ALTFAAE--SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP- 137 (333)
T ss_dssp -----------CEEEEEE--EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-
T ss_pred -----------cEEEeee--cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-
Confidence 1000000 01345577899999999999987 57899999876554333 345667788999999
Q ss_pred CCcEEEEEe-ccCeEEEEEeecceEee------eecCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcccccce--
Q 001318 858 DNNIIAIGM-DDSSIQIYNVRVDEVKS------KLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNR-- 927 (1101)
Q Consensus 858 d~~~lasg~-~dg~v~vwd~~~~~~~~------~l~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~~~~~~-- 927 (1101)
+++++++++ .+..|.+|+........ ....+......++|++++.+++... ..+...+|++.........
T Consensus 138 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 217 (333)
T d1ri6a_ 138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ 217 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeee
Confidence 777777666 45679999987642221 1122345567899999998887654 4566788887553322111
Q ss_pred eeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCceeeeecc-CCCCCCCeeEEEEcCCCCEEEEEE-cC
Q 001318 928 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACF-LD 1003 (1101)
Q Consensus 928 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~~~~~~-~~~h~~~i~~l~~spdg~~l~s~s-~d 1003 (1101)
.................+++++|++++++. .++.+.+|++.......... ...+...+.+++|||||++|++++ .+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~ 297 (333)
T d1ri6a_ 218 TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS 297 (333)
T ss_dssp EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT
T ss_pred eeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC
Confidence 121222222222345678999999988873 56789999887654332221 112345688999999999987665 46
Q ss_pred CeEEEEE--cCCceee
Q 001318 1004 ATVCVFS--AANLKLR 1017 (1101)
Q Consensus 1004 g~v~vwd--~~~~~~~ 1017 (1101)
+.|+||+ ..+|++.
T Consensus 298 ~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 298 HHISVYEIVGEQGLLH 313 (333)
T ss_dssp CEEEEEEEETTTTEEE
T ss_pred CeEEEEEEECCCCcEE
Confidence 8899994 5677653
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.9e-16 Score=172.79 Aligned_cols=285 Identities=11% Similarity=0.142 Sum_probs=186.3
Q ss_pred EEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEE
Q 001318 753 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISL 830 (1101)
Q Consensus 753 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~v 830 (1101)
+++++.++.|++|++... +.+.. +....+...+..++|+|||++|+++. |+.|++
T Consensus 7 ~v~~~~~~~I~v~~~~~~---------------------~~l~~--~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~ 63 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHE---------------------GALTL--TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63 (333)
T ss_dssp EEEEGGGTEEEEEEECTT---------------------SCEEE--EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred EEECCCCCcEEEEEEcCC---------------------CCeEE--EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEE
Confidence 466778899999998421 11000 00012677899999999999997665 799999
Q ss_pred EECCCCceeeEe---cCCCCCeEEEEEecCCCcEEEEEec-cCeEEEEEeecceEee--eecCcccCeeEEEEcCCCCEE
Q 001318 831 FNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKS--KLKGHSKRITGLAFSHALNVL 904 (1101)
Q Consensus 831 wd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~--~l~~h~~~V~~l~~s~dg~~l 904 (1101)
|++.......++ ..+...+..++|+| ||++|++++. ++.|.+|+........ ....+...+.++.|+||++++
T Consensus 64 ~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~ 142 (333)
T d1ri6a_ 64 YRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL 142 (333)
T ss_dssp EEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred EEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence 999765443332 22345678899999 8988888874 6799999988765433 334566778899999999998
Q ss_pred EEEeC-CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCcee----eeecc
Q 001318 905 VSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC----VKQWV 977 (1101)
Q Consensus 905 ~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~----~~~~~ 977 (1101)
++++. +..+.+|+.................. .......++|++++.+++.. ..+...+|+...... .....
T Consensus 143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTV--EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEEEECS--TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE
T ss_pred eccccccceeeEEEeccCCcceeeeceeeeee--cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeee
Confidence 88774 45689999876543322221111111 11345789999999998874 456777877644321 11111
Q ss_pred ----CCCCCCCeeEEEEcCCCCEEEEE-EcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 978 ----PRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 978 ----~~~h~~~i~~l~~spdg~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
..........+++++|+++++.+ ..++.+.+|++........+. ...+.+ ..+..++|+| ||++|++
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~p~~~a~sp-DGk~l~v 292 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE--GFQPTE-----TQPRGFNVDH-SGKYLIA 292 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE--EEEECS-----SSCCCEEECT-TSSEEEE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE--EEeCCC-----CCeeEEEEeC-CCCEEEE
Confidence 11224567788999999976654 467889999987654333222 011111 2344799999 7887666
Q ss_pred E-ecCCcEEEEeccCCCccc
Q 001318 1053 G-LSDGGVHVFEPLESEGKW 1071 (1101)
Q Consensus 1053 ~-~~dg~v~vW~~~~~~~~~ 1071 (1101)
+ ..++.|.+|++....+++
T Consensus 293 a~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 293 AGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp ECTTTCEEEEEEEETTTTEE
T ss_pred EECCCCeEEEEEEECCCCcE
Confidence 5 456899999775544444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=9.2e-17 Score=177.14 Aligned_cols=204 Identities=12% Similarity=0.070 Sum_probs=137.6
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCC-------CeEEEEEecCCCcEEEEE-eccCeEEEEEee
Q 001318 809 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIG-MDDSSIQIYNVR 877 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg-~~dg~v~vwd~~ 877 (1101)
..++|+++++++++++ +..+.+|+..+++.+..+..+.. ....+++++ |++.++.. ..++.+.+++..
T Consensus 109 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~v~~~~~~~~~~~~~~ 187 (355)
T d2bbkh_ 109 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR-DGSLAKVAFGTEGTPEITHTE 187 (355)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET-TSCEEEEECCSSSCCEEEECC
T ss_pred ceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcC-CCCEEEEEecCCCeEEEEecc
Confidence 4467888888777764 46788899888888777664332 233455666 44444332 334445554443
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCC----CCCCCCCCeEEEEcCCCcE
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~ 953 (1101)
... ..+...+....+++++..++.++.++.+.+|++..++............ ..........+++++++..
T Consensus 188 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~ 262 (355)
T d2bbkh_ 188 VFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262 (355)
T ss_dssp CCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred ccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence 322 2344456677888899999999999999999998865322111110000 0000123456899999998
Q ss_pred EEEE-eC----------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC--EEEEEEcCCeEEEEEcCCceeeeec
Q 001318 954 FLVV-HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 954 la~~-~d----------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~--~l~s~s~dg~v~vwd~~~~~~~~~~ 1020 (1101)
++.. .+ ..|.+||..+++.+..+.. ...+.+++|||||+ ++++++.|++|+|||+.+++.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 339 (355)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence 8873 22 3799999999998887753 45689999999998 3556777999999999999999887
Q ss_pred C
Q 001318 1021 N 1021 (1101)
Q Consensus 1021 ~ 1021 (1101)
.
T Consensus 340 ~ 340 (355)
T d2bbkh_ 340 N 340 (355)
T ss_dssp C
T ss_pred e
Confidence 6
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.60 E-value=1.4e-13 Score=157.60 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=111.4
Q ss_pred EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc--
Q 001318 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-- 427 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-- 427 (1101)
.+.|.+|+++ +. ..|+.|.+||+.+++.... +....+..|...|.+++|||||++||.++.
T Consensus 21 ~~~W~~d~~~-~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~ 83 (470)
T d2bgra1 21 SLRWISDHEY-LY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (470)
T ss_dssp CCEECSSSEE-EE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred CCEeCCCCEE-EE--EcCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence 4779999985 54 3578999999999986542 122246778889999999999999998854
Q ss_pred -------CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcc----
Q 001318 428 -------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE---- 496 (1101)
Q Consensus 428 -------d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~---- 496 (1101)
++.+.|||+++++.. .+..|...+..+.|||||+. ++.. .++.+++|+..+++..+....+.
T Consensus 84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~~--ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~ 156 (470)
T d2bgra1 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (470)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcce--eeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence 567899999998643 37788999999999999994 5554 46789999999988766443221
Q ss_pred --------------cCeEEEeeeecCCccEEEEEecCCc-EEEEec
Q 001318 497 --------------APVYSVCPHHKENIQFIFSTALDGK-IKAWLY 527 (1101)
Q Consensus 497 --------------~~v~~v~~~~~~~~~~l~s~~~dg~-i~~wd~ 527 (1101)
+....+.| ++||+.|+....|.+ +..|.+
T Consensus 157 ~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 157 YNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp EESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEE
T ss_pred cccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEE
Confidence 12233445 567788888776543 544433
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=1.1e-13 Score=152.66 Aligned_cols=241 Identities=10% Similarity=-0.002 Sum_probs=158.9
Q ss_pred eEEEEecCCCEEEEEe-----------CCeEEEEECCCCceeeEecCCCC-------CeEEEEEecCCCcEEEEEe-ccC
Q 001318 809 PCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-DDS 869 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg~-~dg 869 (1101)
..++|+|||+++++.+ ++.|++||..+++.+..+..+.. ....++|+| ||++|+++. .++
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~ 146 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSS 146 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSS
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCC
Confidence 3689999999998764 45699999999998887754322 234689999 888887775 579
Q ss_pred eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 870 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 870 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
.+.+||+.+++.+..+..+..... +......++..+.||++.+|++.............. .......+....+.+
T Consensus 147 ~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 221 (368)
T d1mdah_ 147 AAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC--TGAQNCSSQAAQANY 221 (368)
T ss_dssp CEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS--CTTSCBCSCCEEETT
T ss_pred eEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc--ccccccceeeccccc
Confidence 999999999998888766544321 112234556666777777777665433221111111 111113445677888
Q ss_pred CCcEEEEEeCCeEEEEEcCCceeeeeccCCCC----------CCCeeEEEEcCCCCEEEEEEcC---------CeEEEEE
Q 001318 950 DQIHFLVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLD---------ATVCVFS 1010 (1101)
Q Consensus 950 dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h----------~~~i~~l~~spdg~~l~s~s~d---------g~v~vwd 1010 (1101)
++..+.. ..+.+.+++...+..........+ ......+++++++..++....+ ..|.+||
T Consensus 222 ~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D 300 (368)
T d1mdah_ 222 PGMLVWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp TTEEEEC-BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred CcEEEEe-cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence 8765543 445566666655543322211111 1234568899999987665433 3599999
Q ss_pred cCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC--EEEEEecCCcEEEEeccCCC
Q 001318 1011 AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN--EFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~--~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
..+++.+.++. . + -.+.+++|+| ||+ +++++..|+.|+|||..+++
T Consensus 301 ~~t~~~~~~~~----~--~-----~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 301 ASVGQTSGPIS----N--G-----HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SSSCCEEECCE----E--E-----EEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCCCcEeEEec----C--C-----CceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCC
Confidence 99999887765 1 1 1233799999 565 35677889999999999998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.51 E-value=5.3e-12 Score=144.16 Aligned_cols=150 Identities=11% Similarity=0.103 Sum_probs=104.7
Q ss_pred eEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec-----CcccCeEEEeeeecCCccEEEEEec---------CCc
Q 001318 456 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-----GHEAPVYSVCPHHKENIQFIFSTAL---------DGK 521 (1101)
Q Consensus 456 ~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~~~l~s~~~---------dg~ 521 (1101)
..+.|.+|+. ++.. .|+.+.+||+.+++....+. .|...|.++.| ++||++|+.++. ++.
T Consensus 20 ~~~~W~~d~~--~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~--SpDg~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 20 YSLRWISDHE--YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSI--SPDGQFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCCEECSSSE--EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cCCEeCCCCE--EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEE--CCCCCEEEEEECCcceeeeccCce
Confidence 3578999987 4543 47889999999998876554 34577888887 467788888753 567
Q ss_pred EEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 001318 522 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 522 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
+.+||+.+++ ...+..+...+....|||||+ .++.. .++.+++|+..+++.......
T Consensus 94 ~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~---------------------~ia~~-~~~~l~~~~~~~g~~~~~t~~ 150 (470)
T d2bgra1 94 YDIYDLNKRQ-LITEERIPNNTQWVTWSPVGH---------------------KLAYV-WNNDIYVKIEPNLPSYRITWT 150 (470)
T ss_dssp EEEEETTTTE-ECCSSCCCTTEEEEEECSSTT---------------------CEEEE-ETTEEEEESSTTSCCEECCSC
T ss_pred EEEEECCCCc-ccccccCCccccccccccCcc---------------------eeeEe-ecccceEEECCCCceeeeeec
Confidence 8899998754 444555666666666666665 45553 567899999998876654432
Q ss_pred CC----------------CCCCcCeEEEccCCCEEEEEeCCCc-EEEEEe
Q 001318 602 DG----------------GLPASPRIRFNKDGCLLAVSTNDNG-IKILAT 634 (1101)
Q Consensus 602 ~~----------------~~~~v~~~~~s~~~~~l~~~~~dg~-i~iw~~ 634 (1101)
.. .......+.|||||++|+....|.+ +..|.+
T Consensus 151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred cCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence 11 1123456889999999999876544 555554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.51 E-value=5e-13 Score=147.30 Aligned_cols=270 Identities=11% Similarity=-0.011 Sum_probs=174.5
Q ss_pred CCCCcEEEEEecCCCeEEEE--EecCCc--EEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 344 QGSSPMSMDFHPVQQTLLLV--GTNVGD--IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llat--g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
+.+....++..++++...++ ...++. |.+||..+++.+.. ..++... .++|+|||
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg 76 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG 76 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence 44555666778888864333 344454 67779999988764 2333333 58999999
Q ss_pred CeEEEEE----------cCCeEEEEEccCCceeeeeeeecc-----ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC
Q 001318 420 SLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 484 (1101)
Q Consensus 420 ~~las~~----------~d~~i~iwd~~~~~~~~~~~~l~~-----h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 484 (1101)
++|++.+ .|++|.+||..+++.+.... +.. .......++|+|||++ ++++...++.+.+||+.
T Consensus 77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~-~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~~ 154 (368)
T d1mdah_ 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVP 154 (368)
T ss_dssp SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEET
T ss_pred CEEEEEcccCccccccccCCeEEEEECCCCcEeeeec-CCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEECC
Confidence 9999865 37789999999998765432 111 1122346999999996 33444568999999999
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee------cCCCCceeEEEEccCCceEEec
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY------EAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~------~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
+++.+..+..+..... .+... ..++..+.||.+.+|++......... ..+...+....+.+++..++..
T Consensus 155 ~~~~~~~~~~~~~~~~----~~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (368)
T d1mdah_ 155 GASDDQLTKSASCFHI----HPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229 (368)
T ss_dssp TTEEEEEEECSSCCCC----EEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred CCcEeEEeeccCcceE----ccCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence 9999988876544321 12222 46777788899888887665443221 1111122233333333211110
Q ss_pred -------------------------------cccCceeEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEE
Q 001318 559 -------------------------------FRKRSLGVVQFDTTKNRFLAAGDD---------FSIKFWDMDSVQLLTS 598 (1101)
Q Consensus 559 -------------------------------~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~ 598 (1101)
........+++++++..++....+ ..|.+||..+++.+..
T Consensus 230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~ 309 (368)
T d1mdah_ 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309 (368)
T ss_dssp SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE
Confidence 001122347788888877665322 3599999999998877
Q ss_pred EcCCCCCCCcCeEEEccCCC-E-EEEEeCCCcEEEEEecCccccccccc
Q 001318 599 IDADGGLPASPRIRFNKDGC-L-LAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 599 ~~~~~~~~~v~~~~~s~~~~-~-l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
+.... .+.+++|+|||+ + ++++..++.|++||..++ +.++.+.
T Consensus 310 ~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~ 354 (368)
T d1mdah_ 310 ISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp CEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred ecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence 76432 478899999997 3 456677899999999999 5555554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.49 E-value=1.3e-14 Score=157.32 Aligned_cols=249 Identities=10% Similarity=-0.020 Sum_probs=155.9
Q ss_pred CCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeec--------CCCCccc-----ccccccCCCCCeEEEEEecCCCeE
Q 001318 356 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--------GACSMPL-----QAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 356 dg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~-----~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
|+-|.+++|+.+|.|+||++.+++.+.+.++ +.. ...+... .......|.-...+..++|||++|
T Consensus 9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~IpV--fspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~l 86 (441)
T d1qnia2 9 DEYYGFWSGGHQGEVRVLGVPSMRELMRIPV--FNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYL 86 (441)
T ss_dssp CSEEEEEECBTTCCEEEEEETTTEEEEEECS--SSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEE
T ss_pred CCEEEEEeCCCCCcEEEEeCCCCcEEEEEEe--EcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEE
Confidence 3446788999999999999999988865332 211 0000000 000112344566777789999999
Q ss_pred EEEE-cCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC-----------------cEEEEeCC
Q 001318 423 GVAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK-----------------TIKVWDAT 484 (1101)
Q Consensus 423 as~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~-----------------~i~iwd~~ 484 (1101)
++.. .+.+|.++|+.+++..+.. + -.+...+..++|+||++..+++..+.+. .+..+|..
T Consensus 87 fV~d~~~~rVavIDl~t~k~~~ii-~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~ 164 (441)
T d1qnia2 87 FINDKANTRVARIRLDIMKTDKIT-H-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE 164 (441)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEE-E-CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT
T ss_pred EEEcCCCCEEEEEECCCCcEeeEE-e-cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCc
Confidence 7764 6789999999998865532 1 2456789999999999976665554432 23557888
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEecCC-cEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCc
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 563 (1101)
+.+....+.... ....+.+ +++|+++++.+.+. .+..++..+...... +.... .
T Consensus 165 t~~v~~qI~v~~-~p~~v~~--spdGk~a~vt~~nse~~~~id~~t~~~~d~-------i~v~n---------------~ 219 (441)
T d1qnia2 165 TMDVAWQVIVDG-NLDNTDA--DYTGKYATSTCYNSERAVDLAGTMRNDRDW-------VVVFN---------------V 219 (441)
T ss_dssp TCSEEEEEEESS-CCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCSSBCE-------EEEEE---------------H
T ss_pred cceeeEEEecCC-CccceEE--CCCCCEEEEEecCCCceEEEeccCcceEEE-------EEeCC---------------c
Confidence 877776665333 3455665 56667887777553 222222222111110 00000 0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEE-EeCCCcEEEEEecCc
Q 001318 564 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKILATSDG 637 (1101)
Q Consensus 564 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~ 637 (1101)
-..+.+.++|+++.. +.++.+.+++....+.+..+..... ...+.++|||+++++ +..+++|.+||+.+.
T Consensus 220 p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 220 ERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp HHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred cceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence 011234455554443 4567888888877777877765443 577999999998765 567899999998754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.45 E-value=2.6e-13 Score=147.15 Aligned_cols=318 Identities=11% Similarity=0.050 Sum_probs=193.2
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeec---------------------------cccCCeeEEEEcCCCCeEEEEEecC
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEID---------------------------AHVGGVNDIAFSHPNKQLCVITCGD 474 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~---------------------------~h~~~V~~~~~s~d~~~~~l~s~~~ 474 (1101)
+++++.+|.|++|++.+++.++.+..+. .|........++|||++ ++++...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~-lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKY-LFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEE-EEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCE-EEEEcCC
Confidence 4567889999999999988776543332 13334556667899996 5677778
Q ss_pred CCcEEEEeCCCCceEEEec-CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCc
Q 001318 475 DKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 553 (1101)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 553 (1101)
+..|.++|+.+++....+. .+...+..++|+++++..+++..+.+..-...|-..... +
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~------------------~-- 152 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL------------------D-- 152 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG------------------G--
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc------------------c--
Confidence 8999999999999888664 356778888986665544555555433221111000000 0
Q ss_pred eEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCc-EEEE
Q 001318 554 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG-IKIL 632 (1101)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iw 632 (1101)
+.. ..+..+|..+.+....+...+. ...+.|+|+|+++++.+.+.. +..+
T Consensus 153 --------------------~~~------~~~~~iD~~t~~v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~i 203 (441)
T d1qnia2 153 --------------------NSY------TMFTAIDAETMDVAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDL 203 (441)
T ss_dssp --------------------GEE------EEEEEEETTTCSEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSH
T ss_pred --------------------ccc------ceEEeecCccceeeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEE
Confidence 000 1355678888887777765443 677999999999998876532 1111
Q ss_pred EecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCc
Q 001318 633 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 712 (1101)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 712 (1101)
+..+. ... ..
T Consensus 204 d~~t~-~~~---------------------------------------------------------------------d~ 213 (441)
T d1qnia2 204 AGTMR-NDR---------------------------------------------------------------------DW 213 (441)
T ss_dssp HHHTC-SSB---------------------------------------------------------------------CE
T ss_pred eccCc-ceE---------------------------------------------------------------------EE
Confidence 11111 000 01
Q ss_pred ceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCc
Q 001318 713 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 792 (1101)
Q Consensus 713 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g 792 (1101)
+.+.+.. ..+.++++|+++.. +.++.+.++.. ...
T Consensus 214 i~v~n~p----------------------~~~~~~~dGk~~~v-~~~~v~vvd~~----------------------~~~ 248 (441)
T d1qnia2 214 VVVFNVE----------------------RIAAAVKAGNFKTI-GDSKVPVVDGR----------------------GES 248 (441)
T ss_dssp EEEEEHH----------------------HHHHHHHTTCCBCC-TTCCCCEEECS----------------------SSC
T ss_pred EEeCCcc----------------------ceEEEecCCCEEEe-CCCCcEEEEcc----------------------cCC
Confidence 1111111 11223455554433 33444444432 111
Q ss_pred cccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCcee--------eEecC---CCCCeEEEEEecCCC
Q 001318 793 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM--------ATFMP---PPPAATFLAFHPQDN 859 (1101)
Q Consensus 793 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~--------~~~~~---~~~~i~~l~~sp~d~ 859 (1101)
..+.. +. -......++++|||+++++++ +++|.+||+++.... ..+.+ ..-.....+|++ +|
T Consensus 249 ~v~~~-IP---vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g 323 (441)
T d1qnia2 249 EFTRY-IP---VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RG 323 (441)
T ss_dssp SSEEE-EC---CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SS
T ss_pred ceEEE-Ee---CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecC-Cc
Confidence 11111 11 123356799999999988776 799999998753211 11111 112345678999 89
Q ss_pred cEEEEEeccCeEEEEEeecc----------eEeeee-----cCcccCeeEEEEcCCCCEEEEEeC
Q 001318 860 NIIAIGMDDSSIQIYNVRVD----------EVKSKL-----KGHSKRITGLAFSHALNVLVSSGA 909 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~----------~~~~~l-----~~h~~~V~~l~~s~dg~~l~s~s~ 909 (1101)
+.+.+...|..|..|++... ..+.++ .||...+.+.+|+|||++|++++.
T Consensus 324 ~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 324 NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 99999999999999998521 233444 578888888899999999999954
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.29 E-value=3.5e-10 Score=123.02 Aligned_cols=255 Identities=10% Similarity=0.065 Sum_probs=150.4
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEe--cCCCCCeEEEEEecCCCcEE--EEEe-ccCeEEEEEeec
Q 001318 804 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNII--AIGM-DDSSIQIYNVRV 878 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~l--asg~-~dg~v~vwd~~~ 878 (1101)
....+..|++++++++|+++..+.+..|.+.....+... .........+++++ +++.+ +++. ..+.|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence 345567899999999999988778888877642222221 11234466778888 67643 3322 245665554422
Q ss_pred c----eE------------eee-ecCcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCCcc-cccceeeecCCCCCCCC
Q 001318 879 D----EV------------KSK-LKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWE-KQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 879 ~----~~------------~~~-l~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~ 939 (1101)
. .. ... -......+.++.|+|||++|++++. ...|.+|++.... ............ .
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g 192 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----G 192 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----T
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----C
Confidence 1 00 000 0112224679999999999888764 3468888765422 111111111111 1
Q ss_pred CCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCceeeee-----ccC------------CCCCCCeeEEEEcCCCCEEEEE
Q 001318 940 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQ-----WVP------------RESSAPITHATFSCDSQLVYAC 1000 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~~~~-----~~~------------~~h~~~i~~l~~spdg~~l~s~ 1000 (1101)
...+.++|+|+|+++.+. .+++|.+|++........ ... ..+......+.++|||++|+++
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 367899999999998874 568999999876542211 100 0112345678999999998876
Q ss_pred Ec------CCeEEEEEcCCceeeee-cCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE-ecCCcEEEEeccCCC
Q 001318 1001 FL------DATVCVFSAANLKLRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1001 s~------dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~-~~dg~v~vW~~~~~~ 1068 (1101)
.. .+.|..|++.....+.+ .........| .++..++++|.+|++|+++ ..++.|.+|++....
T Consensus 273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 42 22377787754322221 1111111112 3344799998778876555 677999999986554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.14 E-value=1.1e-08 Score=107.80 Aligned_cols=246 Identities=14% Similarity=0.098 Sum_probs=161.1
Q ss_pred CCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEE
Q 001318 334 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 413 (1101)
Q Consensus 334 ~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 413 (1101)
.+.++...+.-...+..++++|||+ |+++...+++|..|+....... +......+.++
T Consensus 16 ~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gl 73 (302)
T d2p4oa1 16 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGL 73 (302)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEE
T ss_pred CcccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceE
Confidence 3455555665555789999999999 6888888999999986643222 23345679999
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 493 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 493 (1101)
+|++||+++++...++.+.+|+....................+.+++.++++ ++++.+.++.+..+|..++.....+.
T Consensus 74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~ 151 (302)
T d2p4oa1 74 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLE 151 (302)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEec
Confidence 9999999999998888888888765432221111223456789999999998 78888888999999988775433221
Q ss_pred C----------cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCc
Q 001318 494 G----------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563 (1101)
Q Consensus 494 ~----------h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 563 (1101)
. .......+.+ +.+ .++++.+..+.|..++........... .+. ....
T Consensus 152 ~~~~~~~~~~~~~~~~ngi~~--~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~-----------------~~~--~~~~ 209 (302)
T d2p4oa1 152 HPMLARSNSESVFPAANGLKR--FGN-FLYVSNTEKMLLLRIPVDSTDKPGEPE-----------------IFV--EQTN 209 (302)
T ss_dssp CGGGSCSSTTCCSCSEEEEEE--ETT-EEEEEETTTTEEEEEEBCTTSCBCCCE-----------------EEE--ESCC
T ss_pred CCccceeeccCcccccccccc--cCC-ceeeecCCCCeEEeccccccccccccc-----------------ccc--CCCC
Confidence 1 1122344443 332 466666778888878776543221100 000 0112
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEE---ccCCCEEEEEeCC
Q 001318 564 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF---NKDGCLLAVSTND 626 (1101)
Q Consensus 564 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~d 626 (1101)
...++++++|+++++...++.|..++.. ++..............++++| ++|++.|++++..
T Consensus 210 pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 210 IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 3347788888877777788999999875 443333333333345778999 6788888877654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.08 E-value=1.5e-07 Score=101.67 Aligned_cols=158 Identities=14% Similarity=0.180 Sum_probs=100.8
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEECCCC-cee--eEe--cCCCCCeEEEEEecCCCcEEEE-EeccCeEEEEEeec
Q 001318 807 AVPCFALSKNDSYVMSAS--GGKISLFNMMTF-KTM--ATF--MPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRV 878 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~-~~~--~~~--~~~~~~i~~l~~sp~d~~~las-g~~dg~v~vwd~~~ 878 (1101)
.+.+++|+|||+++++++ .+.|.+|+.... ... ... .......+.++|+| +++++.+ ...+++|.+|++..
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence 467899999999888887 467888876532 222 111 22345789999999 7776654 44678999999876
Q ss_pred ceEe-----eee--------------cCcccCeeEEEEcCCCCEEEEEeC-C-----CceEEEeCCCccccc-ceee-ec
Q 001318 879 DEVK-----SKL--------------KGHSKRITGLAFSHALNVLVSSGA-D-----SQLCVWSSDGWEKQK-NRFL-QI 931 (1101)
Q Consensus 879 ~~~~-----~~l--------------~~h~~~V~~l~~s~dg~~l~s~s~-D-----~~v~iwd~~~~~~~~-~~~~-~~ 931 (1101)
++.. ..+ ..+......+.++|||++|+++.. + ..|..|++....... ...+ ..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 304 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence 4321 111 012223567899999999987643 2 236677765422111 1111 11
Q ss_pred C-CCCCCCCCCCeEEEEcC-CCcEEEEE--eCCeEEEEEcCCc
Q 001318 932 P-TGRTPTAQSDTRVQFHQ-DQIHFLVV--HETQLAIFETTKL 970 (1101)
Q Consensus 932 ~-~~~~~~~~~v~~~~~s~-dg~~la~~--~d~~v~vwd~~~~ 970 (1101)
. .+ .....++|+| +|++|+++ .++.|.+|++...
T Consensus 305 ~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 305 PTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 1 12 2347799998 89988885 6789999987544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.02 E-value=1.7e-08 Score=106.44 Aligned_cols=237 Identities=9% Similarity=0.025 Sum_probs=151.3
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE-ee
Q 001318 806 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KS 883 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~ 883 (1101)
..+..++++|||+++++.. +++|+.|+... + ...+......+.+++|++ +++++++...++.+.+|+...... ..
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence 3578999999999888877 78899998653 3 334444567899999999 889999988889999888765321 11
Q ss_pred ee--cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeec--CCCCCCCCCCCeEEEEcCCCcEEEE--E
Q 001318 884 KL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTPTAQSDTRVQFHQDQIHFLV--V 957 (1101)
Q Consensus 884 ~l--~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~dg~~la~--~ 957 (1101)
.+ .......+.+++.++|+++++.+.++.+..++..++.......... .............+.++ +..+.. .
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence 11 1234567899999999999998888888888887754221111100 00111111123445554 444444 4
Q ss_pred eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccc
Q 001318 958 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1037 (1101)
Q Consensus 958 ~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1037 (1101)
..+.|..++.....................++|++||+++++...++.|..++... +...... .. .....+
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~----~~----~~~~~p 253 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQ----AE----QGVIGS 253 (302)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEEC----GG----GTCTTE
T ss_pred CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEe----cC----CCCCCc
Confidence 67788888876654332221111234567899999999888888899999998754 3322222 11 111336
Q ss_pred eEEEEeCC--CCCEEEEEecC
Q 001318 1038 LVIAAHPQ--EPNEFALGLSD 1056 (1101)
Q Consensus 1038 ~~i~~~~~--d~~~l~s~~~d 1056 (1101)
.+++|... |++.|+.++..
T Consensus 254 t~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 254 TAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEEEECCSTTTTTEEEEEECT
T ss_pred eEEEEcCCCCCCCEEEEECCC
Confidence 68999521 66777666543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.98 E-value=7.7e-08 Score=98.56 Aligned_cols=237 Identities=9% Similarity=0.038 Sum_probs=153.9
Q ss_pred CCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE
Q 001318 804 PEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 881 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 881 (1101)
+......++++++|..+++.. .+.+..++...................+++++ +++++++....+.+++++-.+...
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence 455678999999999776654 46777777654333222222234567899999 888888777777777776555554
Q ss_pred eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCC
Q 001318 882 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET 960 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~ 960 (1101)
+....+. ....++++.++|+++++-..+..+..++...... ......+. .....++++++|+.+++ ..++
T Consensus 91 ~~~~~~~-~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~ 161 (260)
T d1rwia_ 91 VLPFDGL-NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGL----NDPDGVAVDNSGNVYVTDTDNN 161 (260)
T ss_dssp ECCCCSC-CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCCCSC----CSCCEEEECTTCCEEEEEGGGT
T ss_pred eeeeeee-eecccccccccceeEeecccccccccccccccee----eeeeeccc----CCcceeeecCCCCEeeeccccc
Confidence 4443332 4568999999999888776666677777655321 11111111 24578999999998777 4778
Q ss_pred eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEE
Q 001318 961 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1040 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i 1040 (1101)
.|..++........... ........|++.++|.++++....+.|..++....... .+.. ...-.|..|
T Consensus 162 ~i~~~d~~~~~~~~~~~--~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~~---------~~~~~P~~i 229 (260)
T d1rwia_ 162 RVVKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPF---------TGLNTPLAV 229 (260)
T ss_dssp EEEEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECCC---------CSCCCEEEE
T ss_pred cccccccccceeeeeec--cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEcc---------CCCCCeEEE
Confidence 89999987654433221 33456789999999998888888888988886554322 2210 111245689
Q ss_pred EEeCCCCCEEEEEecCCcEEEEe
Q 001318 1041 AAHPQEPNEFALGLSDGGVHVFE 1063 (1101)
Q Consensus 1041 ~~~~~d~~~l~s~~~dg~v~vW~ 1063 (1101)
++++ +++++++-..++.|+..+
T Consensus 230 ~~d~-~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 230 AVDS-DRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp EECT-TCCEEEEEGGGTEEEEEC
T ss_pred EEeC-CCCEEEEECCCCEEEEEe
Confidence 9998 578877766666554443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.98 E-value=2.4e-07 Score=95.92 Aligned_cols=241 Identities=11% Similarity=0.114 Sum_probs=164.0
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC------CCCeEEEEEecCCCcEEEEE-eccCeEEEEEeec
Q 001318 807 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRV 878 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg-~~dg~v~vwd~~~ 878 (1101)
....++++++|+.+++-. ++.|++||.+ ++.+..+... ......+++..+.+.++++. +.++.|.+++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence 468999999999776655 6889999965 6766666321 12345677766445555544 34557777775 4
Q ss_pred ceEeeeec-CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-
Q 001318 879 DEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 956 (1101)
Q Consensus 879 ~~~~~~l~-~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~- 956 (1101)
++....+. ........+++.++|.++++....+.+.+++....... .... ..+ ......+++.++|..+++
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~---~~g~-~~~---~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH---KFGC-SKH---LEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE---EEEC-TTT---CSSEEEEEECSSSEEEEEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceee---cccc-ccc---ccccceeeeccceeEEeee
Confidence 55555553 34456788999999998888777777888876552211 1111 111 135678999999988777
Q ss_pred EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEc-CCeEEEEEcCCceeeeecCCCcccCCCCCCCCc
Q 001318 957 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1035 (1101)
Q Consensus 957 ~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1035 (1101)
...+.|++||.. ++.+..+...++......|++.++|+++++-.. ++.|.+|+ .+|+++..+...... .
T Consensus 175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~--------~ 244 (279)
T d1q7fa_ 175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKH--------A 244 (279)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCC--------S
T ss_pred ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCC--------C
Confidence 467899999975 566666654455667899999999997776543 45799998 568887766421111 2
Q ss_pred cceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1036 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1036 ~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
.+..++..| ||.+ ++++.++.|++|+.....
T Consensus 245 ~p~~vav~~-dG~l-~V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 245 QCFDVALMD-DGSV-VLASKDYRLYIYRYVQLA 275 (279)
T ss_dssp CEEEEEEET-TTEE-EEEETTTEEEEEECSCCC
T ss_pred CEeEEEEeC-CCcE-EEEeCCCeEEEEEeeeec
Confidence 355788988 6665 455679999999997754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.98 E-value=1.9e-07 Score=96.63 Aligned_cols=245 Identities=13% Similarity=0.141 Sum_probs=164.8
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC-
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS- 818 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~- 818 (1101)
....++++++|+.+++-..+..|++|+.+ ++.+.... ..+ ...+.......+++..+..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-------G~~~~~~~------~~~-------~~~~~~~~p~~~~~~~~~~~ 83 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-------GRFKFQFG------ECG-------KRDSQLLYPNRVAVVRNSGD 83 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-------SCEEEEEC------CBS-------SSTTCBSSEEEEEEETTTTE
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-------CCEEEEec------ccC-------CCcccccccccccccccccc
Confidence 45789999999977777778899998752 22211110 000 0001222345566665544
Q ss_pred EEEEEe--CCeEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee--cCcccCee
Q 001318 819 YVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--KGHSKRIT 893 (1101)
Q Consensus 819 ~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l--~~h~~~V~ 893 (1101)
++++.. ++.|..++. .+.....+.. .......+++.+ +++++++....+.+.+++. +++.+..+ ..+.....
T Consensus 84 ~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~ 160 (279)
T d1q7fa_ 84 IIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPN 160 (279)
T ss_dssp EEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEE
T ss_pred cceeccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEecc-CCceeecccccccccccc
Confidence 444443 467888886 4566666542 345678899998 8888888777788888885 45666654 34566788
Q ss_pred EEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E-eCCeEEEEEcCCce
Q 001318 894 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKLE 971 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~-~d~~v~vwd~~~~~ 971 (1101)
.+++.++|..+++....+.|++||..... +.... ..........++++++|+.+++ . .+..|.+|+. +|+
T Consensus 161 ~i~~d~~g~i~v~d~~~~~V~~~d~~G~~------~~~~g-~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~ 232 (279)
T d1q7fa_ 161 GVVVNDKQEIFISDNRAHCVKVFNYEGQY------LRQIG-GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQ 232 (279)
T ss_dssp EEEECSSSEEEEEEGGGTEEEEEETTCCE------EEEES-CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSC
T ss_pred eeeeccceeEEeeeccccceeeeecCCce------eeeec-ccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCC
Confidence 89999999999888888999999986522 11111 1111235688999999998777 3 3457999985 577
Q ss_pred eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
.+..+...........|++.|||.+++ ++.+..|++|.......
T Consensus 233 ~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 233 LISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred EEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence 776665444445789999999997655 56789999999876543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=7.8e-07 Score=98.97 Aligned_cols=377 Identities=11% Similarity=0.100 Sum_probs=196.1
Q ss_pred EEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc----
Q 001318 352 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---- 427 (1101)
Q Consensus 352 ~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---- 427 (1101)
.|.+++.+ +. -..+|.|.+||+.+++...... ...-..-.+....|||||++++....
T Consensus 23 ~W~~~~~~-~~-~~~~g~i~~~~~~~~~~~~l~~----------------~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~ 84 (465)
T d1xfda1 23 KWISDTEF-IY-REQKGTVRLWNVETNTSTVLIE----------------GKKIESLRAIRYEISPDREYALFSYNVEPI 84 (465)
T ss_dssp CBSSSSCB-CC-CCSSSCEEEBCGGGCCCEEEEC----------------TTTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred EEeCCCcE-EE-EeCCCcEEEEECCCCCEEEEEc----------------CccccccccceeEECCCCCeEEEEEcccce
Confidence 46777774 33 3557899999999886532100 01112236778899999999887643
Q ss_pred -----CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec-CcccCe--
Q 001318 428 -----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPV-- 499 (1101)
Q Consensus 428 -----d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v-- 499 (1101)
.+.+.++|+.++.... +.........+....|||||+.+.++ .++.|.+.+..++..++... +..+.|
T Consensus 85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~iafv---~~~nl~~~~~~~~~~~~lt~~g~~~~i~n 160 (465)
T d1xfda1 85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQLIFI---FENNIYYCAHVGKQAIRVVSTGKEGVIYN 160 (465)
T ss_dssp SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTCEEEE---ETTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred eEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCceEEEE---ecceEEEEecCCCceEEEecccCcceeec
Confidence 5788999999886432 22223344567789999999963333 25688899888776665432 222222
Q ss_pred ---------------EEEeeeecCCccEEEEEec-CCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCc
Q 001318 500 ---------------YSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563 (1101)
Q Consensus 500 ---------------~~v~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 563 (1101)
.++-| ++||++|+.... +..|..+.+..... .....+..+.+..-|.
T Consensus 161 G~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~-----~~~p~~~~~~Yp~~G~---------- 223 (465)
T d1xfda1 161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGS---------- 223 (465)
T ss_dssp EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTS----------
T ss_pred cccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeecccccc-----cccceeeeeeccccCC----------
Confidence 23334 567777777653 33444443321100 0001112222211111
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC----CCCCcCeEEEccCCCEEEEEeC-C---CcEEEEEec
Q 001318 564 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN-D---NGIKILATS 635 (1101)
Q Consensus 564 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~-d---g~i~iw~~~ 635 (1101)
. .....+.++|+.++.......... ....+..+.|++++++++.... + ..+.++|..
T Consensus 224 -----------~----np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~ 288 (465)
T d1xfda1 224 -----------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT 288 (465)
T ss_dssp -----------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred -----------C----CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCC
Confidence 0 001246778887665433221111 1112456899999987665433 2 247778887
Q ss_pred CccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCcccee---eccCCCc
Q 001318 636 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI---TEESNDK 712 (1101)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~d~~ 712 (1101)
++ .....+..... .+.........+.+++..++ ....++.
T Consensus 289 tg-~~~~~~~e~~~------------------------------------~wv~~~~~~p~~~~dg~~~~fi~~se~~g~ 331 (465)
T d1xfda1 289 TG-VCTKKHEDESE------------------------------------AWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (465)
T ss_dssp TC-CEEEEEEEECS------------------------------------SCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred CC-cEEEEEEEcCC------------------------------------ceEeccCCceeEccCCCeeEEEEeeeeccc
Confidence 77 33322221111 01111123344556666433 2223333
Q ss_pred ceeeec--ccc---CCCccccccccCccccccceEEE-EEcCCCceEEeee-cC--ceEEeeeccccccCCCCceeeeec
Q 001318 713 SKVWKL--TEL---SEPNQCRSLRLPENLRATKISRL-IFTNSGNAILALA-SN--AIHLLWKWQRTERNSSGKATASVA 783 (1101)
Q Consensus 713 i~~w~~--~~~---~~~~~~~~~~~~~~~~~~~i~~l-~~s~~g~~l~~~~-~d--g~i~iw~~~~~~~~~~~~~~~~~~ 783 (1101)
-.+|.+ ... ......+.+. ...-.|..+ .++.+++.|...+ .+ +.-.+|.+..
T Consensus 332 ~~ly~~~~~~~~~~~~~~~~~~LT----~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l-------------- 393 (465)
T d1xfda1 332 GKFYHITVSSSQPNSSNDNIQSIT----SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT-------------- 393 (465)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSC----CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS--------------
T ss_pred CceEEEEeccccccCCCceeEEec----cCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEEC--------------
Confidence 333322 211 1111222221 123445554 6888877665433 22 3334554421
Q ss_pred CccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeC----CeEEEEECCCCceeeEec
Q 001318 784 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG----GKISLFNMMTFKTMATFM 843 (1101)
Q Consensus 784 ~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sd----g~i~vwd~~~~~~~~~~~ 843 (1101)
.......++...+ ........+.|||++++++.... -.+.+++..+++.+..++
T Consensus 394 ---~g~~~~~~lt~~~---~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 394 ---VGNFNRQCLSCDL---VENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp ---STTCCCBCSSTTS---SSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred ---CCCCcceeecccc---CCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 1111111222111 13445678999999999987653 348888888888887775
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.7e-07 Score=102.79 Aligned_cols=367 Identities=11% Similarity=0.035 Sum_probs=187.1
Q ss_pred cEEEEEecCCcEEEEecCCCCceeeecCCC---CceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE--------
Q 001318 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPG---RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-------- 579 (1101)
Q Consensus 511 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 579 (1101)
.+++ -..+|.|.+||+.+++....+.... ..+....+ +||+++++..
T Consensus 29 ~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------------SpD~~~vl~~~~~~~~~r 86 (465)
T d1xfda1 29 EFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEI---------------------SPDREYALFSYNVEPIYQ 86 (465)
T ss_dssp CBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEE---------------------CTTSSEEEEEESCCCCSS
T ss_pred cEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEE---------------------CCCCCeEEEEEcccceeE
Confidence 4443 3456789999988766544333221 12333444 4555555544
Q ss_pred -eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCC
Q 001318 580 -GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 658 (1101)
Q Consensus 580 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1101)
+..+.+.++|+.++..............+....|||||+.||... ++.|.+.+..++ ...+.......
T Consensus 87 ~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~-~~~~lt~~g~~--------- 155 (465)
T d1xfda1 87 HSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGK-QAIRVVSTGKE--------- 155 (465)
T ss_dssp SCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSS-CCEEEECCCBT---------
T ss_pred eeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCC-ceEEEecccCc---------
Confidence 235789999999887654433333334566789999999998876 567777776655 22221110000
Q ss_pred CCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccc
Q 001318 659 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
..+..|-. -|-.+. .-.
T Consensus 156 -------------------------------------------~~i~nG~~-----d~vyee---------------e~~ 172 (465)
T d1xfda1 156 -------------------------------------------GVIYNGLS-----DWLYEE---------------EIL 172 (465)
T ss_dssp -------------------------------------------TTEEEEEC-----CHHHHH---------------TTS
T ss_pred -------------------------------------------ceeecccc-----chhhhh---------------hhc
Confidence 00000000 000000 000
Q ss_pred cceEEEEEcCCCceEEeeecC-ceEEeeecccc--c---------cCCCCceeeeecCccccCCCccccccccCCC---C
Q 001318 739 TKISRLIFTNSGNAILALASN-AIHLLWKWQRT--E---------RNSSGKATASVAPQLWQPPSGIMMTNDVTDS---N 803 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~--~---------~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~---~ 803 (1101)
..-.++.|||||+.|+....| ..+..+.+... . ....|.......+.++++.++.......... .
T Consensus 173 ~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~ 252 (465)
T d1xfda1 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (465)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred cccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcc
Confidence 111345677777776665533 33444433211 0 1112222222334556665554322111110 1
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-----CeEEEEECCCCceeeEecCC-CCC----eEEEEEecCCCcEEE---EEeccC-
Q 001318 804 PEEAVPCFALSKNDSYVMSASG-----GKISLFNMMTFKTMATFMPP-PPA----ATFLAFHPQDNNIIA---IGMDDS- 869 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~sd-----g~i~vwd~~~~~~~~~~~~~-~~~----i~~l~~sp~d~~~la---sg~~dg- 869 (1101)
...-+..+.|++++++++...+ ..|.++|..++++...+... ... -....|++ ||+.++ ....+|
T Consensus 253 ~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~ 331 (465)
T d1xfda1 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGR 331 (465)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSS
T ss_pred ccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeeccc
Confidence 2224677899999987776542 24889999998876554322 221 23467899 665332 222333
Q ss_pred -eEEEEEee------cceEeeeecCcccCeeEE-EEcCCCCEEE-EEeCCC--ceEEEeCCCcccccceeeecCCCCCCC
Q 001318 870 -SIQIYNVR------VDEVKSKLKGHSKRITGL-AFSHALNVLV-SSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPT 938 (1101)
Q Consensus 870 -~v~vwd~~------~~~~~~~l~~h~~~V~~l-~~s~dg~~l~-s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
.++.+++. .++.+..+....-.|..+ +|..+++.|. ++..++ .-.+|.+.-.......++......
T Consensus 332 ~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~--- 408 (465)
T d1xfda1 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE--- 408 (465)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS---
T ss_pred CceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCC---
Confidence 44444432 233344454444456665 6888877765 444432 234555442111111222211111
Q ss_pred CCCCeEEEEcCCCcEEEEEeC----CeEEEEEcCCceeeeecc
Q 001318 939 AQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQWV 977 (1101)
Q Consensus 939 ~~~v~~~~~s~dg~~la~~~d----~~v~vwd~~~~~~~~~~~ 977 (1101)
......+.|||+|++++.... -.+.+++..+++.+..+.
T Consensus 409 ~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 409 NCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp SCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 135679999999999987322 246677777777666654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.88 E-value=7.4e-07 Score=93.58 Aligned_cols=257 Identities=14% Similarity=0.082 Sum_probs=155.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEec-------CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTN-------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.-.....++|.|+|+. +++... +|.|..||..+++......- ....-.+.-..++|.
T Consensus 16 ~~~g~EGpa~d~dG~l-y~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~ 79 (314)
T d1pjxa_ 16 DIPGAEGPVFDKNGDF-YIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSCE-EEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEEC
T ss_pred CCCCCeEeEEeCCCCE-EEEECccccccccCCEEEEEECCCCcEEEEECC---------------ccccCCCcceeEEEe
Confidence 4455778999999994 444322 46799999888765431000 011112345789999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeecccc-CCeeEEEEcCCCCeEEEEEecC---------------CCcEEE
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGD---------------DKTIKV 480 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~V~~~~~s~d~~~~~l~s~~~---------------d~~i~i 480 (1101)
++|+.|+++...+.|...+.+++..........+.. ...+.++|.++|. +.++-.. ++.|..
T Consensus 80 ~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~ 157 (314)
T d1pjxa_ 80 RDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp SSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred CCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEE
Confidence 999998888887889999987754221111111111 1368899999998 5665321 234444
Q ss_pred EeCCCCceEEEecCcccCeEEEeeeecCCc---cEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEe
Q 001318 481 WDATNGAKQYIFEGHEAPVYSVCPHHKENI---QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 481 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~---~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
++. .|+..... .....-+.++|+++.++ .+.++-+..+.|..||+......... .+... +.
T Consensus 158 ~~~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~--------~~~~~------~~ 221 (314)
T d1pjxa_ 158 FTT-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK--------KVWGH------IP 221 (314)
T ss_dssp ECT-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE--------EEEEE------CC
T ss_pred Eee-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee--------eEEEE------cc
Confidence 442 34443332 23334567888766543 24445566788888877643322110 00000 00
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEecC
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSD 636 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~ 636 (1101)
+........++++.+|+..++....+.|.+||.+.++.+..+.... ....+++|.|+++.| ++.+.+|.|..+++..
T Consensus 222 ~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~--~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCC--CCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 1111123457788888888887788999999998888777766443 247789999999755 5556678888887654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=7.2e-07 Score=91.82 Aligned_cols=202 Identities=11% Similarity=0.155 Sum_probs=109.0
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCC---eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEE
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRH---IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~---~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 479 (1101)
+..+...+..-+|||||++||...... .+.+.+..++.... +..+........|+|+|+.+.+ ....++...
T Consensus 34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~spdg~~i~~-~~~~~~~~~ 108 (269)
T d2hqsa1 34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSPDGSKLAF-ALSKTGSLN 108 (269)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECTTSSEEEE-EECTTSSCE
T ss_pred EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE----EeeeecccccceecCCCCeeeE-eeecCCccc
Confidence 344566788999999999999875543 47777777765433 4557788899999999996333 333333333
Q ss_pred EE--eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEE--ecCCCCceeeecCCCCceeEEEEccCCceE
Q 001318 480 VW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 480 iw--d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 555 (1101)
++ ............ .........+..... ..+++...+|...+| ++..... ..............
T Consensus 109 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~-------- 177 (269)
T d2hqsa1 109 LYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDAD-------- 177 (269)
T ss_dssp EEEEETTTCCEEECCC-CSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEE--------
T ss_pred eeecccccccceeeee-ccccccccccccccc-cceecccccCCceEeeeecccccc-eeeecccccccccc--------
Confidence 33 322333322222 333333333332222 345555555654444 4443222 12222233333344
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeC-CCc--EEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC---CcE
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGD-DFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND---NGI 629 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i 629 (1101)
++|++..++..+. .+. +.+.+...+.. ..+. .. .......|+|||++|+..+.. ..|
T Consensus 178 -------------~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~~--~~~~~p~~SPDG~~i~f~s~~~~~~~l 240 (269)
T d2hqsa1 178 -------------VSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS-ST--FLDETPSLAPNGTMVIYSSSQGMGSVL 240 (269)
T ss_dssp -------------ECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECC-CS--SSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred -------------cccccceeEEEeecCCceeeeEeecccccc-eEee-cC--ccccceEECCCCCEEEEEEcCCCCcEE
Confidence 4555555655443 334 44445544433 2222 22 235678999999998866543 356
Q ss_pred EEEEecCc
Q 001318 630 KILATSDG 637 (1101)
Q Consensus 630 ~iw~~~~~ 637 (1101)
+++++..+
T Consensus 241 ~~~~~dg~ 248 (269)
T d2hqsa1 241 NLVSTDGR 248 (269)
T ss_dssp EEEETTSC
T ss_pred EEEECCCC
Confidence 66776544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.87 E-value=2.4e-07 Score=94.72 Aligned_cols=241 Identities=9% Similarity=0.032 Sum_probs=147.8
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
+......++++++|..+++..+..+.|..++..+...... ..+-......++++++|++.+
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v 72 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYV 72 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEE
Confidence 4456789999999995444445567777777655433221 111123467899999999888
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~ 503 (1101)
+....+.+++++-.++..+. .. ........+++.++++ ++++-..+..+..++...................++
T Consensus 73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence 77777777776655544332 12 2235678999999998 666666667788887655443222222223446677
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 583 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 583 (1101)
+ ++++.++++...++.|..++.+............. ....++++++|+++++....+
T Consensus 147 ~--~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~---------------------~p~gi~~d~~g~l~vsd~~~~ 203 (260)
T d1rwia_ 147 V--DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT---------------------APWGIAVDEAGTVYVTEHNTN 203 (260)
T ss_dssp E--CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC---------------------SEEEEEECTTCCEEEEETTTT
T ss_pred e--cCCCCEeeeccccccccccccccceeeeeeccccC---------------------CCccceeeeeeeeeeeecCCC
Confidence 6 45667888888888899888765432221111112 233456666666777777778
Q ss_pred cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 584 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
.|..++..... ...+. .........++++++|+++++-..++.|+.++.
T Consensus 204 ~i~~~~~~~~~-~~~~~-~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 204 QVVKLLAGSTT-STVLP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp EEEEECTTCSC-CEECC-CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred EEEEEeCCCCe-EEEEc-cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 88888765443 22222 222334678999999998887777777765543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=2.7e-07 Score=95.10 Aligned_cols=229 Identities=12% Similarity=0.059 Sum_probs=133.5
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecCC--cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 412 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 412 (1101)
......++.+...+...+|||||++|+.+....+ .+.+.+..++.... +..+.+.+..
T Consensus 28 G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~ 87 (269)
T d2hqsa1 28 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGA 87 (269)
T ss_dssp SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSCEEE
T ss_pred CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eeeeeccccc
Confidence 3445556667888999999999998666655444 35566666554432 4567788999
Q ss_pred EEEecCCCeEEEEEcC-CeEEE--EEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCc--EEEEeCCCCc
Q 001318 413 VIWSPDGSLFGVAYSR-HIVQI--YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGA 487 (1101)
Q Consensus 413 l~~spdg~~las~~~d-~~i~i--wd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~ 487 (1101)
..|||||+.++..... +...+ +........ ....+........+++++.. .+++...++. |.+.++..+.
T Consensus 88 ~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~ 162 (269)
T d2hqsa1 88 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGA 162 (269)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----ECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSC
T ss_pred ceecCCCCeeeEeeecCCccceeecccccccce----eeeecccccccccccccccc-ceecccccCCceEeeeeccccc
Confidence 9999999999986643 33333 333332212 13334455666778888885 4555555554 5555655554
Q ss_pred eEEEecCcccCeEEEeeeecCCccEEEEEec-CCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeE
Q 001318 488 KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566 (1101)
Q Consensus 488 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~ 566 (1101)
.. .+..+........| ++++..++..+. .+...+|..+...................|+|||+
T Consensus 163 ~~-~~~~~~~~~~~~~~--spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~------------- 226 (269)
T d2hqsa1 163 PQ-RITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGT------------- 226 (269)
T ss_dssp CE-ECCCSSSEEEEEEE--CTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSS-------------
T ss_pred ce-eeeccccccccccc--ccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCC-------------
Confidence 33 33334444555555 455566665554 45555555554433333333343444455555555
Q ss_pred EEEcCCCCEEEEEe---CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 567 VQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 567 ~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
.|+..+ ....|++++++.+.... +.... ..+...+|||
T Consensus 227 --------~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~--g~~~~p~WSP 267 (269)
T d2hqsa1 227 --------MVIYSSSQGMGSVLNLVSTDGRFKAR-LPATD--GQVKFPAWSP 267 (269)
T ss_dssp --------EEEEEEEETTEEEEEEEETTSCCEEE-CCCSS--SEEEEEEECC
T ss_pred --------EEEEEEcCCCCcEEEEEECCCCCEEE-EeCCC--CcEEeEEeCC
Confidence 454333 24568999998766544 33222 2466678887
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.84 E-value=8.3e-07 Score=93.59 Aligned_cols=234 Identities=12% Similarity=0.084 Sum_probs=147.2
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc----CeEEEEEeecce
Q 001318 806 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDE 880 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~ 880 (1101)
..+..++|.++|++.++-. ++.|+.|+..+......+.........+++++ +|+++++...+ +.+...+...+.
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCce
Confidence 3457899999998666554 78999999888776666655666789999999 88877765432 234444444433
Q ss_pred EeeeecC--cccCeeEEEEcCCCCEEEEEeCC------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCc
Q 001318 881 VKSKLKG--HSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 952 (1101)
Q Consensus 881 ~~~~l~~--h~~~V~~l~~s~dg~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 952 (1101)
....... -....+.+++.++|++.++.... +.+..++.+.+.. ....... .....++|+||++
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~--~~~~~~~-------~~pnGia~s~dg~ 189 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV--TPIIQNI-------SVANGIALSTDEK 189 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE--EEEEEEE-------SSEEEEEECTTSS
T ss_pred eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee--EEEeecc-------ceeeeeeeccccc
Confidence 3222221 12347789999999977764321 2244444433221 1111111 1346799999998
Q ss_pred EEEEE--eCCeEEEEEcCCce-ee---ee--ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCc
Q 001318 953 HFLVV--HETQLAIFETTKLE-CV---KQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1024 (1101)
Q Consensus 953 ~la~~--~d~~v~vwd~~~~~-~~---~~--~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 1024 (1101)
.|.++ ..+.|..|++.... .. .. ............|++.++|++.++....+.|.+|| .+|+.+.++.
T Consensus 190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~--- 265 (319)
T d2dg1a1 190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQIL--- 265 (319)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEE---
T ss_pred eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEe---
Confidence 77663 67899999875421 11 10 00011123467899999999988888899999999 5799988887
Q ss_pred ccCCCCCCCCccceEEEEeCCCCCEEEEEec
Q 001318 1025 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1055 (1101)
Q Consensus 1025 ~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~ 1055 (1101)
+|.........+.+++|.+. .+.+++...
T Consensus 266 -~P~~~~~~~~~~~~~~~~~~-~~~~~~t~~ 294 (319)
T d2dg1a1 266 -IPGRDEGHMLRSTHPQFIPG-TNQLIICSN 294 (319)
T ss_dssp -CTTGGGTCSCBCCEEEECTT-SCEEEEEEE
T ss_pred -CCCcCCCcCceeeeEEEeCC-CCEEEEEcC
Confidence 44322223344558999884 455554443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.80 E-value=9e-07 Score=92.91 Aligned_cols=238 Identities=15% Similarity=0.141 Sum_probs=150.1
Q ss_pred CeeEEEEecCCCEEEEEe--------CCeEEEEECCCCceeeEecCC----CCCeEEEEEecCCCcEEEEEeccCeEEEE
Q 001318 807 AVPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIY 874 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s--------dg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg~~dg~v~vw 874 (1101)
....++|.++|+++++.. +|+|..||..++......... .+....++|++ +++.|++++..+.|..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence 356789999999877643 367999998887654433221 23357899999 77777777777778888
Q ss_pred EeecceEeeeecCcc----cCeeEEEEcCCCCEEEEEeC---------------CCceEEEeCCCcccccceeeecCCCC
Q 001318 875 NVRVDEVKSKLKGHS----KRITGLAFSHALNVLVSSGA---------------DSQLCVWSSDGWEKQKNRFLQIPTGR 935 (1101)
Q Consensus 875 d~~~~~~~~~l~~h~----~~V~~l~~s~dg~~l~s~s~---------------D~~v~iwd~~~~~~~~~~~~~~~~~~ 935 (1101)
+.............. ...+.+++.++|.+.+|-.. ++.|..++.+. +. .......
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~--~~~~~~~--- 171 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QM--IQVDTAF--- 171 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CE--EEEEEEE---
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ce--eEeeCCc---
Confidence 876543221111111 13578999999998887432 12233333322 11 1111111
Q ss_pred CCCCCCCeEEEEcCCCc----EEEE--EeCCeEEEEEcCCceeee------eccCCCCCCCeeEEEEcCCCCEEEEEEcC
Q 001318 936 TPTAQSDTRVQFHQDQI----HFLV--VHETQLAIFETTKLECVK------QWVPRESSAPITHATFSCDSQLVYACFLD 1003 (1101)
Q Consensus 936 ~~~~~~v~~~~~s~dg~----~la~--~~d~~v~vwd~~~~~~~~------~~~~~~h~~~i~~l~~spdg~~l~s~s~d 1003 (1101)
.....++|+|++. .|.+ ...+.|..||+.....+. .+. ..+......+++..+|++.++....
T Consensus 172 ----~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~-~~~~~~pdGiavD~~GnlyVa~~~~ 246 (314)
T d1pjxa_ 172 ----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp ----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred ----ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcc-ccccccceeeEEecCCcEEEEEcCC
Confidence 1235789998864 4444 366789888875432221 111 1223346789999999998888888
Q ss_pred CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEecCCcEEEEeccCC
Q 001318 1004 ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1004 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~~dg~v~vW~~~~~ 1067 (1101)
+.|.+||.++++.+..+. .+. ..+.+++|.| |++ +.++.+.+|.|...++...
T Consensus 247 g~I~~~dp~~g~~~~~i~----~p~------~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 247 SHIEVFGPDGGQPKMRIR----CPF------EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TEEEEECTTCBSCSEEEE----CSS------SCEEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred CEEEEEeCCCCEEEEEEE----CCC------CCEEEEEEeC-CCCEEEEEECCCCcEEEEECCCC
Confidence 999999999888776665 221 2344799998 565 5577777788777776443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.70 E-value=1.4e-05 Score=83.89 Aligned_cols=241 Identities=12% Similarity=0.056 Sum_probs=148.9
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
...+..++|.++|+ |.++-...+.|..|+..+++.... ..........++|++||+++++
T Consensus 39 ~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va 98 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVC 98 (319)
T ss_dssp CCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEE
T ss_pred CcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEEE
Confidence 44567999999998 678877889999999887654431 2334456889999999998887
Q ss_pred EEcC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC------CCcEEEEeCCCCceEEEecC
Q 001318 425 AYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEG 494 (1101)
Q Consensus 425 ~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~ 494 (1101)
...+ +.|...+..++...... .-..-....+.+++.++|. +.++... .+.+..++.. ++.+..+..
T Consensus 99 ~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~ 174 (319)
T d2dg1a1 99 YLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQ 174 (319)
T ss_dssp ECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT-SCCEEEEEE
T ss_pred ecCCCccceeEEEEcCCCceeeeec-cCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecc-cceeEEEee
Confidence 6432 33555555554432211 1111234578899999998 5555432 1235555543 333333332
Q ss_pred cccCeEEEeeeecCCccEE-EEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCC
Q 001318 495 HEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573 (1101)
Q Consensus 495 h~~~v~~v~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1101)
.....+.++|+ ++++.| ++-+..+.|..|+++.......... ....... ........++++.+|
T Consensus 175 ~~~~pnGia~s--~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~-----~~~~~~~--------~~~~~PdGl~vD~~G 239 (319)
T d2dg1a1 175 NISVANGIALS--TDEKVLWVTETTANRLHRIALEDDGVTIQPFG-----ATIPYYF--------TGHEGPDSCCIDSDD 239 (319)
T ss_dssp EESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-----EEEEEEC--------CSSSEEEEEEEBTTC
T ss_pred ccceeeeeeec--cccceEEEecccCCceEEEEEcCCCceecccc-----ceeeecc--------CCccceeeeeEcCCC
Confidence 33445678874 455544 5556678999998865332211000 0000000 001123457888888
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCCC----CCCCcCeEEEccCCCEEEEEeC
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN 625 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~ 625 (1101)
++.++....+.|.+|+. .|+.+..+.... ....+.+++|.+++..+++...
T Consensus 240 ~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 240 NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 88888888999999995 688888876432 2335789999998887776654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.36 E-value=8.6e-06 Score=83.96 Aligned_cols=200 Identities=15% Similarity=0.108 Sum_probs=117.8
Q ss_pred EEecC--CCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec-c-----CeEEEEEeecceEee
Q 001318 812 ALSKN--DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D-----SSIQIYNVRVDEVKS 883 (1101)
Q Consensus 812 ~~s~d--g~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-d-----g~v~vwd~~~~~~~~ 883 (1101)
..+|| |+.+|..++|.|.+.|+.+++. +.+..+...+...+||| ||+.||.... + ..|++++..+++...
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 46789 9999988889999999998775 45666677789999999 8888886542 2 247777777776543
Q ss_pred eec------CcccCeeEEEEcCCCCEEEEEeCC------CceEEEeCCCcccccc--------------eeeecCC-CC-
Q 001318 884 KLK------GHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKN--------------RFLQIPT-GR- 935 (1101)
Q Consensus 884 ~l~------~h~~~V~~l~~s~dg~~l~s~s~D------~~v~iwd~~~~~~~~~--------------~~~~~~~-~~- 935 (1101)
... ..........|+|||+.|+..... ..+...+..++..... ....... ..
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELP 162 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccc
Confidence 221 122345678999999998865332 1233444433221100 0000000 00
Q ss_pred -------------------------CCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCceeeeeccCCCCCCCeeEE
Q 001318 936 -------------------------TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHA 988 (1101)
Q Consensus 936 -------------------------~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l 988 (1101)
...........++++..+.... ....|.++|+.++....... . ......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~--~--~~~~~~ 238 (281)
T d1k32a2 163 HWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTS--F--TDYYPR 238 (281)
T ss_dssp TSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCC--C--CSSCEE
T ss_pred eeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEEeec--C--CCcccc
Confidence 0000112223333432222221 23467888887766543322 1 122334
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCceeee
Q 001318 989 TFSCDSQLVYACFLDATVCVFSAANLKLRC 1018 (1101)
Q Consensus 989 ~~spdg~~l~s~s~dg~v~vwd~~~~~~~~ 1018 (1101)
.|||||+.|+.. .++.|+++|+.+++...
T Consensus 239 ~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 239 HLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp EEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred cCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 689999998864 57899999999887653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.32 E-value=0.00023 Score=73.12 Aligned_cols=222 Identities=8% Similarity=0.021 Sum_probs=145.1
Q ss_pred eEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-
Q 001318 809 PCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL- 885 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l- 885 (1101)
.+..|++....|.... .++|..||.++++.. .+. ....+.++++.+ +++++++ +.+ .|.++|..+++.....
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence 4567887666666555 688999999887543 333 345688999998 7877764 444 5889999887643322
Q ss_pred -cC--cccCeeEEEEcCCCCEEEEEeCC----CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-
Q 001318 886 -KG--HSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV- 957 (1101)
Q Consensus 886 -~~--h~~~V~~l~~s~dg~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~- 957 (1101)
.. ....++.+.+.|+|++.++...+ +.-.+|.+..++... ..... .....++|+++++.+..+
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~--~~~~~-------~~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK--LFADI-------SIPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE--EEEEE-------SSEEEEEECTTSCEEEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE--Eeecc-------CCcceeeecCCCceEEEee
Confidence 11 12357889999999987765432 344667666554211 11111 133678999999977764
Q ss_pred -eCCeEEEEEcCCce------eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCC
Q 001318 958 -HETQLAIFETTKLE------CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1030 (1101)
Q Consensus 958 -~d~~v~vwd~~~~~------~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
..+.|..|++.... ........+-......+++..+|.+.++.-..+.|..|| .+|+.+..+. +|.
T Consensus 167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~----lP~-- 239 (295)
T d2ghsa1 167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYE----VPG-- 239 (295)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEE----CSC--
T ss_pred cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEec----CCC--
Confidence 56788888864321 111111123345688999999999888777788999999 5788988887 442
Q ss_pred CCCCccceEEEEeCCCCCEE-EEEec
Q 001318 1031 SSSNVHPLVIAAHPQEPNEF-ALGLS 1055 (1101)
Q Consensus 1031 ~~~~v~~~~i~~~~~d~~~l-~s~~~ 1055 (1101)
-.+.+++|-..|.+.| +|...
T Consensus 240 ----~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 240 ----KQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp ----SBEEEEEEESTTSCEEEEEEBC
T ss_pred ----CceEEEEEeCCCCCEEEEEECC
Confidence 2355899985455555 44443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.30 E-value=4.6e-05 Score=78.24 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=64.8
Q ss_pred EEecC--CCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc-C
Q 001318 352 DFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-R 428 (1101)
Q Consensus 352 ~~spd--g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d 428 (1101)
..||| |++++.+. +|.|.+.|+.+++... +..+.+.+...+|||||++||.... +
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 46899 99866664 4678888999887643 5667778999999999999997643 2
Q ss_pred -----CeEEEEEccCCceeeeeee---eccccCCeeEEEEcCCCCe
Q 001318 429 -----HIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQ 466 (1101)
Q Consensus 429 -----~~i~iwd~~~~~~~~~~~~---l~~h~~~V~~~~~s~d~~~ 466 (1101)
..|.+++..+++..+.... ...........+|+|||+.
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~ 108 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL 108 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE
Confidence 2477788888765431100 0112235678899999994
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.20 E-value=0.0005 Score=70.48 Aligned_cols=232 Identities=12% Similarity=0.040 Sum_probs=144.9
Q ss_pred EEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcC
Q 001318 349 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 428 (1101)
Q Consensus 349 ~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 428 (1101)
.+..|++....|..+--..+.|.-||..+++... | .....+.++++.++|.++++ +.+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~---------------~~~~~~~~i~~~~dg~l~va-~~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIA-SDD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEE-ETT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------E---------------ECCCCcEEEEEecCCCEEEE-EeC
Confidence 4677888666567666677899999999886532 1 11346889999999987775 444
Q ss_pred CeEEEEEccCCceeeeeeeecc--ccCCeeEEEEcCCCCeEEEEEecC----CCcEEEEeCCCCceEEEecCcccCeEEE
Q 001318 429 HIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGD----DKTIKVWDATNGAKQYIFEGHEAPVYSV 502 (1101)
Q Consensus 429 ~~i~iwd~~~~~~~~~~~~l~~--h~~~V~~~~~s~d~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~h~~~v~~v 502 (1101)
.|.++|..+++... +..... ....++.+.+.++|. +.++... .+.-.+|.+..++....+. ....-+.+
T Consensus 79 -gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~ 153 (295)
T d2ghsa1 79 -GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSI 153 (295)
T ss_dssp -EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEE
T ss_pred -ccEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEee-ccCCccee
Confidence 58999999887432 222221 123588999999998 4444322 2345677777776555443 23345677
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
+|+++.+ .++++-+..+.|..++++.......- . .. +..... ...+....++++.+|++.++.-..
T Consensus 154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~---~--~~-~~~~~~-------~~~g~pdG~~vD~~GnlWva~~~~ 219 (295)
T d2ghsa1 154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTG---K--AE-VFIDST-------GIKGGMDGSVCDAEGHIWNARWGE 219 (295)
T ss_dssp EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSS---C--CE-EEEECT-------TSSSEEEEEEECTTSCEEEEEETT
T ss_pred eecCCCc-eEEEeecccceeeEeeeccccccccc---c--eE-EEeccC-------cccccccceEEcCCCCEEeeeeCC
Confidence 7754332 35566666788888887643221100 0 00 000000 011234556777788877777778
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEe
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST 624 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 624 (1101)
+.|..||. .|+.+..+..... .+++++|- +|.+.|++.+
T Consensus 220 g~V~~~dp-~G~~~~~i~lP~~--~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 220 GAVDRYDT-DGNHIARYEVPGK--QTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp TEEEEECT-TCCEEEEEECSCS--BEEEEEEESTTSCEEEEEE
T ss_pred CceEEecC-CCcEeeEecCCCC--ceEEEEEeCCCCCEEEEEE
Confidence 89999995 6888888875532 57889996 5766665543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.85 E-value=0.0017 Score=66.96 Aligned_cols=197 Identities=13% Similarity=0.143 Sum_probs=124.4
Q ss_pred EEEEe---cCCCEEEEEe--CCeEEEEECCCCceeeEecC-CCCCeEEEEEecC-CCcEEEEEecc--------------
Q 001318 810 CFALS---KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQ-DNNIIAIGMDD-------------- 868 (1101)
Q Consensus 810 ~~~~s---~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~-d~~~lasg~~d-------------- 868 (1101)
.+.+. +||+|+.+.. ++.|.+.|+.+.++.+...- ....+-.+...++ ...|++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 44444 4899999998 68899999999988665433 2344555665441 34567666552
Q ss_pred ----CeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC---------------ceEEEe------------
Q 001318 869 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWS------------ 917 (1101)
Q Consensus 869 ----g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~---------------~v~iwd------------ 917 (1101)
+.+.++|..+.+...++.- .+....+.+++||+++++.+.+. .+.+++
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 2366788888777665542 23466799999999999877431 122333
Q ss_pred -----------CCCccc-ccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCceeeee--------
Q 001318 918 -----------SDGWEK-QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQ-------- 975 (1101)
Q Consensus 918 -----------~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~~~~-------- 975 (1101)
...... .-...+.+. .....+.++|||++++++ -+.++.|+|+++......
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVp-------KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred cEEeCCceeecccccCCcceeEEEecC-------CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence 222100 000111111 234678999999999995 678999999975432110
Q ss_pred ccC-CCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 976 WVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 976 ~~~-~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
... ....-....-+|..+|.-..+---|..|.-|++...
T Consensus 321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred EEeecccCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence 000 012345677899888865666668999999998543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.84 E-value=0.01 Score=61.08 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=66.3
Q ss_pred eeEEEEecCCCEEEEEe--CCeEEEEECCCCcee-----------eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEE
Q 001318 808 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM-----------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 874 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~-----------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 874 (1101)
...+.++|||+++++++ +.++.|+|++..... ..-....-.-...+|+. .|.-..+-.-|..|.-|
T Consensus 277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~kw 355 (459)
T d1fwxa2 277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKW 355 (459)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEE
T ss_pred CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCC-CceEEEEeeccceEEEE
Confidence 55789999999999988 789999998642111 11111233466788988 77666666789999999
Q ss_pred Eeecc----------eEeeeecCcccCeeEE------EEcCCCCEEEEEe
Q 001318 875 NVRVD----------EVKSKLKGHSKRITGL------AFSHALNVLVSSG 908 (1101)
Q Consensus 875 d~~~~----------~~~~~l~~h~~~V~~l------~~s~dg~~l~s~s 908 (1101)
++... ..+.++.-|-. +-.+ ...|||++|++..
T Consensus 356 ~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 356 NIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEE
T ss_pred ecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCCCEEEEec
Confidence 98643 44555544432 1222 2358999999875
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.83 E-value=0.015 Score=65.24 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=44.3
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.|.-||+.+++.+-.... ..++.+=.++-.|.+++.|+.||.++.+|..+|+.+-+++
T Consensus 453 G~l~A~D~~TG~~~W~~~~---~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~ 511 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCceecccCC---CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence 5788899999988655432 2222222334467888889999999999999999998887
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.78 E-value=0.0055 Score=68.77 Aligned_cols=84 Identities=13% Similarity=0.020 Sum_probs=53.9
Q ss_pred CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccce
Q 001318 959 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1038 (1101)
Q Consensus 959 d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1038 (1101)
.+.|.-+|+.+++.+-+..... +..+=.++-.+.++++|+.||.++-+|.++|+.+-+++ ++.+ +...
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~---~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~----l~~~-----~~a~ 510 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK----MPSG-----GIGS 510 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSC
T ss_pred cccEEEeccCCCceeeEcCCCC---CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE----CCCC-----ceec
Confidence 3578889999998876554221 11111223356688889999999999999999998887 4444 2211
Q ss_pred EEEEeCCCCCEEEEEe
Q 001318 1039 VIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 1039 ~i~~~~~d~~~l~s~~ 1054 (1101)
-+.|..+..+||++..
T Consensus 511 P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 511 PMTYSFKGKQYIGSMY 526 (571)
T ss_dssp CEEEEETTEEEEEEEE
T ss_pred ceEEEECCEEEEEEEe
Confidence 3555553334665544
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.75 E-value=0.02 Score=64.34 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=54.6
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceE
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1039 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1039 (1101)
|.+.-+|+.+++.+-..... .++..=.++..|.++++|+.||.++.+|.+||+.+-+++ ++.+.... -
T Consensus 466 G~l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~----~~~~~~~~-----P 533 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ----TGSGIVSP-----P 533 (582)
T ss_dssp EEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSCCCSC-----C
T ss_pred CeEEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE----CCCCcccc-----C
Confidence 56888899999887665432 223322334578888899999999999999999998887 44442122 2
Q ss_pred EEEeCCCC-CEEEEE
Q 001318 1040 IAAHPQEP-NEFALG 1053 (1101)
Q Consensus 1040 i~~~~~d~-~~l~s~ 1053 (1101)
+.|.. || +|++..
T Consensus 534 ~ty~~-~G~qYv~i~ 547 (582)
T d1flga_ 534 ITWEQ-DGEQYLGVT 547 (582)
T ss_dssp EEEEE-TTEEEEEEE
T ss_pred EEEEE-CCEEEEEEE
Confidence 55655 45 455543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.72 E-value=0.00079 Score=76.19 Aligned_cols=153 Identities=9% Similarity=0.061 Sum_probs=88.0
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCcc----------------------------------c-CeeEEEEcCCCCEE
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHS----------------------------------K-RITGLAFSHALNVL 904 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~----------------------------------~-~V~~l~~s~dg~~l 904 (1101)
..++.++.+|.++++|..+|+.+....... + .-..++++|+..++
T Consensus 328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~ 407 (573)
T d1kb0a2 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (573)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence 467778899999999999888764432110 0 01134677887777
Q ss_pred EEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCC
Q 001318 905 VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP 984 (1101)
Q Consensus 905 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~ 984 (1101)
+....+....++.....+...........+. ......+ .++.-.....-+.+.-||+.+++.+-..... .+
T Consensus 408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~---~p 478 (573)
T d1kb0a2 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT-----GWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---SP 478 (573)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGG-----TCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEES---SS
T ss_pred EeeccccceeeecccccccccCCCCcccccc-----ccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCC---CC
Confidence 7777777666666554321111000000000 0000000 0000000011257888999999887665432 12
Q ss_pred eeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 985 ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 985 i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
...=..+-.|.++++|+.||.++.+|.++|+.+-+++
T Consensus 479 ~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~ 515 (573)
T d1kb0a2 479 WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (573)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence 2222234478889999999999999999999998887
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.70 E-value=0.0046 Score=69.37 Aligned_cols=148 Identities=11% Similarity=0.021 Sum_probs=90.6
Q ss_pred eEEEEEeecceEeeeecCcccCeeE---------EEEcCCC---CEEEEEeCCCceEEEeCCCcccccceeeec------
Q 001318 870 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHAL---NVLVSSGADSQLCVWSSDGWEKQKNRFLQI------ 931 (1101)
Q Consensus 870 ~v~vwd~~~~~~~~~l~~h~~~V~~---------l~~s~dg---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------ 931 (1101)
.|.-.|+++++.+-.++.....++. +....+| +.++.++.+|.+.++|-.+++.........
T Consensus 271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~ 350 (560)
T d1kv9a2 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (560)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence 4666677888776555432222211 1222244 367778899999999999887543211100
Q ss_pred -----------------------CCCCCCCCCCCeEEEEcCCCcEEEE-EeC----------------------------
Q 001318 932 -----------------------PTGRTPTAQSDTRVQFHQDQIHFLV-VHE---------------------------- 959 (1101)
Q Consensus 932 -----------------------~~~~~~~~~~v~~~~~s~dg~~la~-~~d---------------------------- 959 (1101)
..+... ...-...+++|+...+.+ ..+
T Consensus 351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~G-g~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (560)
T d1kv9a2 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFG-AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (560)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTC-SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred cChhhccccccccccccccceeeeecccc-ccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence 000000 001124577888777765 221
Q ss_pred --------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 960 --------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 --------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.+.-||+.+++.+-...... +..+=.++-.|.++++|+.||.++.+|.++|+.+-+++
T Consensus 430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~---~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~ 496 (560)
T d1kv9a2 430 DVPAAVVSGALLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (560)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCCcccccceEEEeCCCCeEeeeccCCC---CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence 467889999998877655332 22222334457788899999999999999999998887
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.049 Score=53.88 Aligned_cols=232 Identities=10% Similarity=0.011 Sum_probs=128.2
Q ss_pred EEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE-cCCeEEEEEccC
Q 001318 360 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHG 438 (1101)
Q Consensus 360 llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~ 438 (1101)
||++-. ..|+-.++.+.+... +......+.+++|.+..++|.-.. .++.|.-.++..
T Consensus 4 Ll~s~~--~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~ 61 (266)
T d1ijqa1 4 LFFTNR--HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61 (266)
T ss_dssp EEEECB--SSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred EEEECC--CeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecC
Confidence 455443 468888887654322 223445778999999888777664 456677666654
Q ss_pred Cceeee-eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEe
Q 001318 439 GDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 517 (1101)
Q Consensus 439 ~~~~~~-~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~ 517 (1101)
...... ...+......+..+++.+.++. +..+-...+.|.+.++........+.........+++++. .|.++++..
T Consensus 62 ~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~~ 139 (266)
T d1ijqa1 62 AHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDW 139 (266)
T ss_dssp ------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEecc
Confidence 221111 1112233456778999877776 4456667789999998776655555555566777777542 333444332
Q ss_pred -cCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE-eCCCcEEEEECCCCce
Q 001318 518 -LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQL 595 (1101)
Q Consensus 518 -~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~ 595 (1101)
..+.|...+++............. ....+++++.++.|+.+ ...+.|...++.....
T Consensus 140 ~~~~~I~r~~~dGs~~~~l~~~~~~---------------------~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~ 198 (266)
T d1ijqa1 140 GTPAKIKKGGLNGVDIYSLVTENIQ---------------------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 198 (266)
T ss_dssp SSSCEEEEEETTSCCEEEEECSSCS---------------------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcceeEeccCCCceecccccccc---------------------eeeEEEeeccccEEEEecCCcCEEEEEECCCCCE
Confidence 233454444443222211111112 23445555555555555 4567888888866544
Q ss_pred eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 596 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 596 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..............++++. ++....+-..++.|...+..++
T Consensus 199 ~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 199 KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence 4444333332234456665 3334444446678877777766
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.54 E-value=0.018 Score=61.12 Aligned_cols=260 Identities=14% Similarity=0.075 Sum_probs=133.4
Q ss_pred ccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-C-CeEEEEECCCCceeeEecCC-CCCeEEEEEecCCCcE
Q 001318 785 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G-GKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNI 861 (1101)
Q Consensus 785 ~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-d-g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~ 861 (1101)
.+||+.++...........+.......++.++|++++.|. + ..+.+||..+..-...-... ...-.+++..+ |+++
T Consensus 55 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v 133 (387)
T d1k3ia3 55 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRV 133 (387)
T ss_dssp EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCE
T ss_pred EEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCce
Confidence 3566666654332111112344445678889999999987 3 67999999875543221111 11223566667 8899
Q ss_pred EEEEecc------CeEEEEEeecceEee--eec-------Cccc-----CeeEEEEcCCCCEEEEEeCCCceEEEeCCCc
Q 001318 862 IAIGMDD------SSIQIYNVRVDEVKS--KLK-------GHSK-----RITGLAFSHALNVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 862 lasg~~d------g~v~vwd~~~~~~~~--~l~-------~h~~-----~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~ 921 (1101)
++.|+.+ ..+.+||..+.+-.. ... .+.. .-..+...++|+.++.++.++.+.+++..+.
T Consensus 134 ~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~ 213 (387)
T d1k3ia3 134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 213 (387)
T ss_dssp EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred eeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence 9988743 368999987754211 110 0110 1111333457788888777777777777665
Q ss_pred ccccceeeecCCCCCCCCCCCeEEEE-cCCCcEEEEE-eC--------CeEEEEEcCC---ceee-eeccCCCCCCCeeE
Q 001318 922 EKQKNRFLQIPTGRTPTAQSDTRVQF-HQDQIHFLVV-HE--------TQLAIFETTK---LECV-KQWVPRESSAPITH 987 (1101)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~v~~~~~-s~dg~~la~~-~d--------~~v~vwd~~~---~~~~-~~~~~~~h~~~i~~ 987 (1101)
....................-.++.+ ..+++.++.+ .. ....+.+... .... .....-.+...-.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~ 293 (387)
T d1k3ia3 214 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 293 (387)
T ss_dssp EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred cEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccce
Confidence 43221111111111110011123333 3466766663 21 1233333321 1111 11111112233446
Q ss_pred EEEcCCCCEEEEEEcCC-----------eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEE-EeCCCCCEEEEEec
Q 001318 988 ATFSCDSQLVYACFLDA-----------TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA-AHPQEPNEFALGLS 1055 (1101)
Q Consensus 988 l~~spdg~~l~s~s~dg-----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~-~~~~d~~~l~s~~~ 1055 (1101)
.+..+||++++.|+.+. ++.+||..+.+.... .. ...+.. .+ +.+ ..+ ||++++.|+.
T Consensus 294 ~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~-~~-~~~~R~--~H-----s~a~l~~-dG~v~v~GG~ 363 (387)
T d1k3ia3 294 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ-NP-NSIVRV--YH-----SISLLLP-DGRVFNGGGG 363 (387)
T ss_dssp EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC-CC-CSSCCC--TT-----EEEEECT-TSCEEEEECC
T ss_pred eeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEEC-CC-CCCccc--ce-----EEEEECC-CCEEEEEeCC
Confidence 67778999999888531 478999988765322 11 111211 11 222 345 7899999884
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.051 Score=53.75 Aligned_cols=208 Identities=6% Similarity=-0.038 Sum_probs=127.8
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCc----eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
...+.+++|++..+.+.... .+.|.-.++.... ....+......+..+++.+..+++..+-...+.|.+.++..
T Consensus 29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g 108 (266)
T d1ijqa1 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (266)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence 44577899999888888876 4677777664321 11223333456778999874555555555677999999876
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEe--CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
......+........++++.|...+|.-.. ..+.|.-.+++..... ... . .+- .....+++++.++.|..
T Consensus 109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~--~l~-~-~~~----~~p~gl~iD~~~~~lYw 180 (266)
T d1ijqa1 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLV-T-ENI----QWPNGITLDLLSGRLYW 180 (266)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--EEE-C-SSC----SCEEEEEEETTTTEEEE
T ss_pred ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee--ccc-c-ccc----ceeeEEEeeccccEEEE
Confidence 654444555556678999998666665443 2344655666553221 111 1 111 24578999998887776
Q ss_pred E--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 957 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 957 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+ ..+.|...++...................+|++. ++.+..+-..++.|...+..+|.....+.
T Consensus 181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence 4 5578888898765443333322323456778876 33444444467888888888876655444
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.50 E-value=0.014 Score=65.26 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=51.8
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccC-eeEEEEcCCCC-E
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALN-V 903 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~-~ 903 (1101)
|.|.-||+.+++.+....... ....-.++- .+.++++|+.||.++-+|..+|+.+-+++-..+. -.-+.+..||+ +
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccCCC-CCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 457788999988877654221 111112233 4567788999999999999999999776532221 11256667885 5
Q ss_pred EEEEe
Q 001318 904 LVSSG 908 (1101)
Q Consensus 904 l~s~s 908 (1101)
|+..+
T Consensus 516 v~v~a 520 (560)
T d1kv9a2 516 VAIMA 520 (560)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.50 E-value=0.066 Score=59.86 Aligned_cols=123 Identities=14% Similarity=0.077 Sum_probs=67.0
Q ss_pred EEEEEecCCcEEEEeC-CCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC----CCeEEEEEcCCeEEEE
Q 001318 360 LLLVGTNVGDIGLWEV-GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIY 434 (1101)
Q Consensus 360 llatg~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~las~~~d~~i~iw 434 (1101)
|+++++.++.|...|. ++|+.+-++..+. ..... ........-+.+++.++ +.+++.++.|+.|.-.
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~-------~~~~~-~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Al 136 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQ-------NPAAR-AVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAAL 136 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCC-------CGGGG-GGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEE
T ss_pred EEEeeCCCCcEEEEeCCCCCCEEEEecCCC-------Ccccc-cccccccccceeEEecCCCCCceEEEEEeCCCCeEee
Confidence 3444455677777776 5788765422211 00000 01111111234555443 4578889999999999
Q ss_pred EccCCceeeeeeeeccccC-CeeEEEEcCCCCeEEEEEec------CCCcEEEEeCCCCceEEEec
Q 001318 435 SYHGGDEVRQHLEIDAHVG-GVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFE 493 (1101)
Q Consensus 435 d~~~~~~~~~~~~l~~h~~-~V~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~ 493 (1101)
|.++|+.+.....-..+.. .++.--.--++. ++.+. ..|.|+-+|+.+|+.+.++.
T Consensus 137 da~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~---vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 137 NAETGETVWKVENSDIKVGSTLTIAPYVVKDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp ETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ccccCceeccccccccccccccccCCcEECCe---EEEeeccccccccCceEEEECCCCcEEEEee
Confidence 9999987764322111111 111111111333 44443 34889999999999998764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.48 E-value=0.033 Score=55.03 Aligned_cols=204 Identities=10% Similarity=-0.017 Sum_probs=131.1
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
..+.+++|....+.+.... ++.|+..++........+......+..+++....+++..+-...+.|.+.++.......
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~ 115 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence 3467899998888888876 57899999876555544544446788999987445555555567899999987544322
Q ss_pred eecCcccCeeEEEEcCCCCEEEEEeCC-CceEEE--eCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--e
Q 001318 884 KLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVW--SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 958 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~dg~~l~s~s~D-~~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~ 958 (1101)
.+.........+++.|...+|.-.... +..+|| ++++... .... ..+- .....+++++.+..|..+ .
T Consensus 116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--~~i~--~~~~----~~P~glaiD~~~~~lYw~d~~ 187 (263)
T d1npea_ 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILA--QDNL----GLPNGLTFDAFSSQLCWVDAG 187 (263)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEE--CTTC----SCEEEEEEETTTTEEEEEETT
T ss_pred EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--eeee--eecc----cccceEEEeecCcEEEEEeCC
Confidence 233334568899999877777644332 344555 4444221 1111 1111 245789999888877664 5
Q ss_pred CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 959 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 959 d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.+.|...++........+. + .....+|++. ++.+..+-...+.|...|..+++....+.
T Consensus 188 ~~~I~~~~~~g~~~~~v~~--~-~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 188 THRAECLNPAQPGRRKVLE--G-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp TTEEEEEETTEEEEEEEEE--C-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEECCCCCeEEEEC--C-CCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence 6789999998665543333 2 2235678875 33344444467889999999998776554
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.43 E-value=0.12 Score=57.53 Aligned_cols=121 Identities=9% Similarity=0.046 Sum_probs=64.6
Q ss_pred EEEEe-cCCcEEEEeC-CCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccC
Q 001318 361 LLVGT-NVGDIGLWEV-GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 438 (1101)
Q Consensus 361 latg~-~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 438 (1101)
+..++ .++.|.-.|. +||+.+-++..+ ...... ........-..+++. +..|+.++.|+.+.--|.++
T Consensus 65 vyv~t~~~~~v~Alda~~tG~~~W~~~~~-------~~~~~~-~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~t 134 (571)
T d2ad6a1 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPK-------QDASTK-AVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKT 134 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCC-------CCGGGG-GGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTT
T ss_pred EEEecCCCCeEEEEeCCCCCceEEEecCC-------CCcccc-cccccCcCCCcceee--CCeEEEEeCCCcEEeeehhh
Confidence 44444 4678888887 478876532211 111000 011111111223333 45677888999999999999
Q ss_pred Cceeeeeeeecccc-CCeeEEEEcCCCCeEEEEEec-----CCCcEEEEeCCCCceEEEec
Q 001318 439 GDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFE 493 (1101)
Q Consensus 439 ~~~~~~~~~l~~h~-~~V~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~ 493 (1101)
|+.+........+. ..++.--.-.++. +++.++ .+|.|+-+|+.+|+.+.++.
T Consensus 135 G~~~w~~~~~~~~~~~~~t~~p~v~~~~--vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 135 GKINWEVEVCDPKVGSTLTQAPFVAKDT--VLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEETTE--EEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred hhhhccccccccccccceeecCeEeCCe--EEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 98765432221111 1122111112344 333332 36789999999999998764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.38 E-value=0.073 Score=51.61 Aligned_cols=244 Identities=9% Similarity=0.092 Sum_probs=144.9
Q ss_pred EEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcC
Q 001318 349 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 428 (1101)
Q Consensus 349 ~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 428 (1101)
.+.-.+|..+ +||.-+ ..++.|+|+++.+++....+ ...|..=.|-.+. .|+-.+ +
T Consensus 66 dsAIMhP~~~-IiALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~ 121 (327)
T d1utca2 66 DSAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-D 121 (327)
T ss_dssp SEEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEESSSS-EEEEEC-S
T ss_pred hhhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEEc--------------------CCCcEEEEecCCC-EEEEEc-C
Confidence 3455678887 455444 46899999999998875433 2356666665544 344333 4
Q ss_pred CeEEEEEccCCceeeeeeeecccc----CCeeEEEEcCCCCeEEEEEe------cCCCcEEEEeCCCCceEEEecCcccC
Q 001318 429 HIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITC------GDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 429 ~~i~iwd~~~~~~~~~~~~l~~h~----~~V~~~~~s~d~~~~~l~s~------~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
..|+=|+++......+ .+..|. ..|..-..+++.+.+ +++| +-.|.+.+|..+. +.-+.++||.+.
T Consensus 122 taVYHW~~~g~s~P~k--~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~ 197 (327)
T d1utca2 122 NAVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAAS 197 (327)
T ss_dssp SEEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEE
T ss_pred CceEEEcccCCCCchh--hhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEecc-CcCccccceeee
Confidence 6699999976443222 343343 357777778888863 3333 1236688898554 445778888776
Q ss_pred eEEEeeeecCCc-cEEEEEe---cCCcEEEEecCCCCc-eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCC
Q 001318 499 VYSVCPHHKENI-QFIFSTA---LDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573 (1101)
Q Consensus 499 v~~v~~~~~~~~-~~l~s~~---~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1101)
...+.+...... .+++.+. ..+.+++-++..... ...+ ......+-|.|+.. +.-...+.+++.-
T Consensus 198 F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f---~kk~vdi~fppea~-------~DFPvamqvs~ky 267 (327)
T d1utca2 198 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF---PKKAVDVFFPPEAQ-------NDFPVAMQISEKH 267 (327)
T ss_dssp EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC---CCEEEECCCCTTCT-------TCCEEEEEEETTT
T ss_pred eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC---cceeEEEECCcccc-------CCcEEEEEeeccC
Confidence 655544222221 2232222 125677777765321 1111 12233444555433 1233456677777
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 632 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 632 (1101)
..++....-|.|++||++++.++..-+.... .|...+-..+..-+++...+|.|..-
T Consensus 268 giiyviTK~G~i~lyDleTgt~i~~nRIs~~--~iF~~a~~~~~~Gi~~VNr~GqVl~v 324 (327)
T d1utca2 268 DVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSV 324 (327)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred CEEEEEecCcEEEEEEcccccEEEEeecCCC--ceEEeccCCCCceEEEECCCCeEEEE
Confidence 7889999999999999999999888765444 34434444444455555567776543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.38 E-value=0.0066 Score=68.30 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=51.8
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCe-eEEEEcCCCC-E
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALN-V 903 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~-~ 903 (1101)
|.|.-||+.+++.+...+.... ...=..+- .+.+|++|+.||.++.+|.++|+.+-+++--.+.. .-+.|..||+ |
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p-~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY 534 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSP-WNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ccEEEeCCCCCceEeeecCCCC-CCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 5788889999888877653321 11112233 56688889999999999999999997765322211 1155666886 4
Q ss_pred EEEE
Q 001318 904 LVSS 907 (1101)
Q Consensus 904 l~s~ 907 (1101)
++..
T Consensus 535 v~v~ 538 (573)
T d1kb0a2 535 VSVA 538 (573)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.29 E-value=0.068 Score=56.43 Aligned_cols=233 Identities=9% Similarity=0.032 Sum_probs=118.6
Q ss_pred EEEEEcCCCceEEeeecC-ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEE
Q 001318 742 SRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 820 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~l 820 (1101)
...++.++|+.++.++.+ ..+.+||..... |.... .......-.+++..+||+++
T Consensus 79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~---------------w~~~~---------~~~~~r~~~~~~~~~dG~v~ 134 (387)
T d1k3ia3 79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDS---------------WIPGP---------DMQVARGYQSSATMSDGRVF 134 (387)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTE---------------EEECC---------CCSSCCSSCEEEECTTSCEE
T ss_pred eEEEEecCCcEEEeecCCCcceeEecCccCc---------------ccccc---------cccccccccceeeecCCcee
Confidence 345678888877777665 577788764321 21100 00012223467778899999
Q ss_pred EEEe-C------CeEEEEECCCCceeeEec---------CCC-----CCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 821 MSAS-G------GKISLFNMMTFKTMATFM---------PPP-----PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 821 a~~s-d------g~i~vwd~~~~~~~~~~~---------~~~-----~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
+.++ + ..+.+||..+.+-...-. .+. ..-..+...+ +++++..+..++.+.+++..+.
T Consensus 135 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~g~~~~~~~~~~~~~~ 213 (387)
T d1k3ia3 135 TIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KGSVFQAGPSTAMNWYYTSGSG 213 (387)
T ss_dssp EECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECG-GGCEEECCSSSEEEEEECSTTC
T ss_pred eeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeC-CCCEEEecCcCCcEEecCcccC
Confidence 8886 2 358999988754321100 000 0111122334 6777777777777777777664
Q ss_pred eEeee--ec----CcccCe--eEEEE-cCCCCEEEEEeCCC--------ceEEEeCCCcccccceeeecCCCCCCCCCCC
Q 001318 880 EVKSK--LK----GHSKRI--TGLAF-SHALNVLVSSGADS--------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 942 (1101)
Q Consensus 880 ~~~~~--l~----~h~~~V--~~l~~-s~dg~~l~s~s~D~--------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 942 (1101)
..... .. .+.... .++.+ ..+++.++.++... ...+.++.............. ..+....-
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~r~~ 291 (387)
T d1k3ia3 214 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN--GLYFARTF 291 (387)
T ss_dssp EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT--CCSSCCBS
T ss_pred cEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecc--cccccccc
Confidence 42211 10 011111 12222 34677777776432 233333332111111111111 11111123
Q ss_pred eEEEEcCCCcEEEEE-eC-----------CeEEEEEcCCceeeeeccCCCCCCCeeE-EEEcCCCCEEEEEEc
Q 001318 943 TRVQFHQDQIHFLVV-HE-----------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQLVYACFL 1002 (1101)
Q Consensus 943 ~~~~~s~dg~~la~~-~d-----------~~v~vwd~~~~~~~~~~~~~~h~~~i~~-l~~spdg~~l~s~s~ 1002 (1101)
.+....+||+.++++ .+ ..+.+||..+.+-...-.. .+...-.+ ..+.+||+.|+.|+.
T Consensus 292 ~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~-~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 292 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN-SIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC-SSCCCTTEEEEECTTSCEEEEECC
T ss_pred ceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC-CCcccceEEEEECCCCEEEEEeCC
Confidence 456677899988883 21 1578999988765333211 11111223 346899999998874
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.27 E-value=0.058 Score=60.37 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=53.5
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccC-eeEEEEcCCCC-E
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALN-V 903 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~-~ 903 (1101)
|.|.-+|+.+++.+.....+.. +..-..+. .+.++++|+.||.++-+|.++|+.+-+++--... -.-+.|..||+ |
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCC-CccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 6788899999988877653322 22112233 5667788999999999999999999777532221 12267778885 4
Q ss_pred EEE
Q 001318 904 LVS 906 (1101)
Q Consensus 904 l~s 906 (1101)
++.
T Consensus 544 v~i 546 (582)
T d1flga_ 544 LGV 546 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.26 E-value=0.11 Score=51.13 Aligned_cols=204 Identities=11% Similarity=0.034 Sum_probs=117.3
Q ss_pred CCCCCeEEEEEecCCCeEEEEE-cCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 483 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 483 (1101)
.+...+.+++|.+..++|.-.. .++.|...++.++.... .+......+..+++..-++. +..+-...+.|.+.++
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~ 108 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKM 108 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEec
Confidence 3445688899999877777654 56788888887765332 12233356889999876765 4456666789999998
Q ss_pred CCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEE--ecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 484 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 484 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
........+.........+++.+. .|.++.+-...+..++| +++............
T Consensus 109 dg~~~~~l~~~~l~~p~~l~vdp~-~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~--------------------- 166 (263)
T d1npea_ 109 DGTQRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNL--------------------- 166 (263)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTC---------------------
T ss_pred CCceEEEEecccccCCcEEEEecc-cCcEEEeecCCCCcEEEEecCCCCCceeeeeecc---------------------
Confidence 765543333333456777877543 33333333222232333 333222111111111
Q ss_pred CceeEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 562 RSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
.....+++++.++.|+.+ ...+.|...++........+....+ ..++++. ++....+-...+.|...|..+++
T Consensus 167 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~---P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY---PFAVTSY-GKNLYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS---EEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred cccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC---cEEEEEE-CCEEEEEECCCCEEEEEECCCCc
Confidence 133456666655666555 4567888888876554444443222 3466665 33344444466888888887773
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.15 E-value=0.11 Score=55.78 Aligned_cols=249 Identities=11% Similarity=0.032 Sum_probs=125.8
Q ss_pred CCcEEEEEecCCCeEEEEEecCC----cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
-.+..+++||||++++++-+.+| .|++.|+.+++.+.. .+. ......++|++|++.
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i~-------------------~~~~~~~~W~~D~~~ 184 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLE-------------------RVKFSCMAWTHDGKG 184 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEE-------------------EECSCCEEECTTSSE
T ss_pred ceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-ccc-------------------cccccceEEcCCCCE
Confidence 34556788999998776766666 699999999987642 111 112256899999998
Q ss_pred EEEEEcC----------------CeEEEEEccCCceeeeeeeecccc--CCeeEEEEcCCCCeEEEEEec-CCCcEEEE-
Q 001318 422 FGVAYSR----------------HIVQIYSYHGGDEVRQHLEIDAHV--GGVNDIAFSHPNKQLCVITCG-DDKTIKVW- 481 (1101)
Q Consensus 422 las~~~d----------------~~i~iwd~~~~~~~~~~~~l~~h~--~~V~~~~~s~d~~~~~l~s~~-~d~~i~iw- 481 (1101)
|+-...+ ..|..|.+.+...-. ...+.... ..+..+..+.+++.+++.+.. .+....+|
T Consensus 185 ~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~ 263 (430)
T d1qfma1 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (430)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred EEEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEE
Confidence 8765432 257778777654221 11233333 346677889999963333332 23344444
Q ss_pred -eCCCCc--------eEEEecCcccCeEEEeeeecCCccEEEEEec---CCcEEEEecCCCCceeeecCCCCceeEEEEc
Q 001318 482 -DATNGA--------KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 549 (1101)
Q Consensus 482 -d~~~~~--------~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 549 (1101)
|+.... ....+......+..+. ..++.+++.... ++.|...++....... .
T Consensus 264 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~---------w----- 326 (430)
T d1qfma1 264 CDLQQESNGITGILKWVKLIDNFEGEYDYVT---NEGTVFTFKTNRHSPNYRLINIDFTDPEESK---------W----- 326 (430)
T ss_dssp EEGGGSSSSSCSSCCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEETTBCCGGG---------C-----
T ss_pred eeCCCcccccccccceeEeecccccceEEEe---cCCceeecccCcccccceeEEecCCCCcccc---------c-----
Confidence 443221 1122222222222221 111123332222 2455555554322110 0
Q ss_pred cCCceEEeccccCceeEEEEcCCCCEEEEEe-CC--CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC-
Q 001318 550 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DD--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN- 625 (1101)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 625 (1101)
..+.......+..-.+...+++|+... .+ ..|+++++.++.......... ..+..+...++...+.....
T Consensus 327 ----~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss 400 (430)
T d1qfma1 327 ----KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTS 400 (430)
T ss_dssp ----EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEEC
T ss_pred ----eEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcC
Confidence 011111111222222333334555443 44 348889998887655543222 23444444455544443322
Q ss_pred ---CCcEEEEEecCcc
Q 001318 626 ---DNGIKILATSDGI 638 (1101)
Q Consensus 626 ---dg~i~iw~~~~~~ 638 (1101)
-.++.-+|+.++.
T Consensus 401 ~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 401 FLSPGIIYHCDLTKEE 416 (430)
T ss_dssp SSCCCEEEEEETTSSS
T ss_pred CCCCCeEEEEECCCCC
Confidence 3678888888773
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.06 E-value=0.16 Score=49.26 Aligned_cols=88 Identities=11% Similarity=0.110 Sum_probs=57.5
Q ss_pred CeEEEEECCCCc---ee-----eEe--cC--CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCee
Q 001318 826 GKISLFNMMTFK---TM-----ATF--MP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 893 (1101)
Q Consensus 826 g~i~vwd~~~~~---~~-----~~~--~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 893 (1101)
+++++.++.... .. ..+ .. ..+-..++..|+ .-.++..-+.-|.|++||++++.++..-+-..+.|.
T Consensus 223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF 301 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 301 (327)
T ss_dssp EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE
Confidence 689999986521 11 111 11 133467888888 566888889999999999999998876655566666
Q ss_pred EEEEcCCCCEEEEEeCCCceE
Q 001318 894 GLAFSHALNVLVSSGADSQLC 914 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~s~D~~v~ 914 (1101)
.-+-..+..-++....+|.|.
T Consensus 302 ~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 302 VTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EEEEETTTTEEEEEETTSEEE
T ss_pred EeccCCCCceEEEECCCCeEE
Confidence 555444444455555666543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.68 E-value=0.21 Score=53.30 Aligned_cols=246 Identities=14% Similarity=0.144 Sum_probs=129.7
Q ss_pred CCCeeEEEEecCCCEEEEEe--CC----eEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEecc---------
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD--------- 868 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg----~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~d--------- 868 (1101)
.-.+..+++|||++++|.+- +| .|+++|+.+++.+.. +. ......++|++ |++.|+....+
T Consensus 124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~ 200 (430)
T d1qfma1 124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (430)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred cceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcC-CCCEEEEEEeccccCccccc
Confidence 33455678999999999764 33 499999999987643 22 11235689999 77766544322
Q ss_pred -------CeEEEEEeecce----EeeeecCcccCeeEEEEcCCCCEEEEEe---CCCceEEEeCCCcccccc-----eee
Q 001318 869 -------SSIQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQKN-----RFL 929 (1101)
Q Consensus 869 -------g~v~vwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~l~s~s---~D~~v~iwd~~~~~~~~~-----~~~ 929 (1101)
..|+.+.+.+.. ++..-......+..+..+.|+++++... .+....+|-+........ ...
T Consensus 201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 280 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (430)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence 257777776532 2222222233466788899999986432 234455554432111000 001
Q ss_pred ecCCCCCCCCCCCeEEEEcCCCcEEEEE----eCCeEEEEEcCCceee--eeccCCCCCCCeeEEEEcCCCCEEEEE-Ec
Q 001318 930 QIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYAC-FL 1002 (1101)
Q Consensus 930 ~~~~~~~~~~~~v~~~~~s~dg~~la~~----~d~~v~vwd~~~~~~~--~~~~~~~h~~~i~~l~~spdg~~l~s~-s~ 1002 (1101)
...... ........+.++.+++.+ .++.|...++...... ..+. ..+...+..-.++..+.+|+.. ..
T Consensus 281 ~~~~~~----~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi-~~~~~~~~~~~~~~~~~~lvl~~~~ 355 (430)
T d1qfma1 281 KLIDNF----EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYLH 355 (430)
T ss_dssp EEECSS----SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred Eeeccc----ccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEe-cccCcceeeeEEEEECCEEEEEEEc
Confidence 111111 011223333334444433 3456777777654321 2222 1334445544444455555544 45
Q ss_pred CCe--EEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC---CcEEEEeccCCC
Q 001318 1003 DAT--VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1068 (1101)
Q Consensus 1003 dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d---g~v~vW~~~~~~ 1068 (1101)
|+. |++++..+++...... .+.+ .+. .+...+.+..+.++-++- .+++-+|+.+++
T Consensus 356 ~~~~~l~v~~~~~~~~~~~~~----~~~~----sv~--~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 356 DVKNTLQLHDLATGALLKIFP----LEVG----SVV--GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp TTEEEEEEEETTTCCEEEEEC----CCSS----EEE--EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEeEEEEEECCCCcEEEecC----CCCc----eEe--eccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 654 8899999887754432 2222 122 344444333344333221 678889998886
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.90 E-value=1.1 Score=45.25 Aligned_cols=200 Identities=9% Similarity=0.140 Sum_probs=114.4
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEec----C-CCcEEEEEec--c--CeEEEEEeec-ceEeee
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP----Q-DNNIIAIGMD--D--SSIQIYNVRV-DEVKSK 884 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp----~-d~~~lasg~~--d--g~v~vwd~~~-~~~~~~ 884 (1101)
+..+++... .+.|++||+. |+.+..+. .+.++.+..-. . ...-+++++. + .+|.+|.+.. ...+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 344454444 5669999985 77777764 35566555431 0 2233455552 2 3688888753 222333
Q ss_pred ecCc-------ccCeeEEEE--cCC-CC-EEEEEeCCCceEEEeCCCccc--ccceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 885 LKGH-------SKRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 885 l~~h-------~~~V~~l~~--s~d-g~-~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
+... ...+..+|+ ++. |. +++....+|.+..|.+..... .....+..+... ..+..+++.+..
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde~ 191 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDEY 191 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETTT
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCCC
Confidence 3221 124778887 554 54 466677789999887743221 122222222221 367899999998
Q ss_pred cEEEEE-eCCeEEEEEcCC-----ceeeeeccCCCCCCCeeEEEEc--CCCC-EEEEE-EcCCeEEEEEcCC-ceeeeec
Q 001318 952 IHFLVV-HETQLAIFETTK-----LECVKQWVPRESSAPITHATFS--CDSQ-LVYAC-FLDATVCVFSAAN-LKLRCRI 1020 (1101)
Q Consensus 952 ~~la~~-~d~~v~vwd~~~-----~~~~~~~~~~~h~~~i~~l~~s--pdg~-~l~s~-s~dg~v~vwd~~~-~~~~~~~ 1020 (1101)
..|.++ .+..++.+++.- ...+...........+-.|++- .++. ||++. -.+.+..|||..+ .+.+..|
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence 888887 445566666532 2222222222236678888753 3433 55444 4678899999876 4677666
Q ss_pred CC
Q 001318 1021 NP 1022 (1101)
Q Consensus 1021 ~~ 1022 (1101)
+.
T Consensus 272 ~i 273 (353)
T d1h6la_ 272 QI 273 (353)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.97 E-value=2.5 Score=44.51 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=61.3
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeE--ec------CCCCCeEEEEEecC--CCcEEEEE-ec------
Q 001318 806 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--FM------PPPPAATFLAFHPQ--DNNIIAIG-MD------ 867 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~--~~------~~~~~i~~l~~sp~--d~~~lasg-~~------ 867 (1101)
...++|+|.|||+++++-. .|+|++++..++..... +. .-......++|+|+ ...+|... +.
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~ 106 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence 4578999999999999886 79999999877654322 21 12345788999983 12333332 10
Q ss_pred c----C--eEEEEEeecc-------e-Eeeee---cCcccCeeEEEEcCCCCEEEEEeC
Q 001318 868 D----S--SIQIYNVRVD-------E-VKSKL---KGHSKRITGLAFSHALNVLVSSGA 909 (1101)
Q Consensus 868 d----g--~v~vwd~~~~-------~-~~~~l---~~h~~~V~~l~~s~dg~~l~s~s~ 909 (1101)
+ . .+..+..... + .+..+ ..|. ...|.|.|||.+.++.|.
T Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQ--SGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCC--EEEEEECTTSCEEEEECC
T ss_pred ccccccceEEEeeecccccccccceEEEeeccccccccc--ccceeEcCCCCEEEEecC
Confidence 0 1 2333333221 1 11111 2254 468999999998887774
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.63 E-value=1.5 Score=44.16 Aligned_cols=198 Identities=11% Similarity=0.145 Sum_probs=111.5
Q ss_pred CCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcC------CCCEEEEEe-C-C--CceEEEeCCCcccccce
Q 001318 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNVLVSSG-A-D--SQLCVWSSDGWEKQKNR 927 (1101)
Q Consensus 858 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~------dg~~l~s~s-~-D--~~v~iwd~~~~~~~~~~ 927 (1101)
+..+++....++-|++||+. |+.+..+. .++++.|..-. ...-|+.++ . + .+|.+|.+....... .
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l-~ 114 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL-Q 114 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE-E
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc-c
Confidence 34455555666679999985 77777764 35666655432 222345554 2 2 257888876422111 1
Q ss_pred eeecCCCC-CCCCCCCeEEEE--cCC-CcEEEE--EeCCeEEEEEcC---Cc----eeeeeccCCCCCCCeeEEEEcCCC
Q 001318 928 FLQIPTGR-TPTAQSDTRVQF--HQD-QIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFSCDS 994 (1101)
Q Consensus 928 ~~~~~~~~-~~~~~~v~~~~~--s~d-g~~la~--~~d~~v~vwd~~---~~----~~~~~~~~~~h~~~i~~l~~spdg 994 (1101)
.+...... ......+..+|+ ++. |...+. ..++.+..|.+. .+ +.++.+.. ...+-.+.+....
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~---~~q~EGCVvDde~ 191 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM---NSQTEGMAADDEY 191 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC---SSCEEEEEEETTT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC---CCccceEEEeCCC
Confidence 11111000 011124667777 664 554443 367888888663 22 44555543 4578999999999
Q ss_pred CEEEEEEcCCeEEEEEcC-----CceeeeecCCCcccCCCCCCCCccceEEEEeCC-CCCEEEEEecCCcEEEEeccCCC
Q 001318 995 QLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 995 ~~l~s~s~dg~v~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~-d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
..|+.+-++.-|..++++ .+..+.... .++-...+.-+++-..++ +|.+|++.-.+++..|+|.....
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~------g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~ 265 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD------GRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQN 265 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECS------SSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred CcEEEecCccceEEEEeccCCCccceeeeccc------CccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence 999999888767666653 122232222 111222355445555442 34556666678899999997754
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.26 E-value=3.2 Score=41.72 Aligned_cols=169 Identities=14% Similarity=0.120 Sum_probs=91.5
Q ss_pred CcEEEEEecCCCeEEEEEe-----------cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEE
Q 001318 347 SPMSMDFHPVQQTLLLVGT-----------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~-----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 415 (1101)
....++..|||..++++|- ..|.|.++|+.+.+.... .+.+- . .......+.. ..+.+
T Consensus 36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~-~l~~~---~--~~~~~~~f~P-----hGi~l 104 (340)
T d1v04a_ 36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEII---G--NTLDISSFNP-----HGIST 104 (340)
T ss_dssp CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEE-ECEEE---C--SSSCGGGCCE-----EEEEE
T ss_pred CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcce-EEEec---C--CCCCCcceec-----cceeE
Confidence 4557888999987666652 137888888876543321 11110 0 0000001122 23333
Q ss_pred --ecCCC-eEEEEE---cCCeEEEEEccCCc-eeeeeeeec-cccCCeeEEEEcCCCCeEEEEEec--C-----------
Q 001318 416 --SPDGS-LFGVAY---SRHIVQIYSYHGGD-EVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG--D----------- 474 (1101)
Q Consensus 416 --spdg~-~las~~---~d~~i~iwd~~~~~-~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~--~----------- 474 (1101)
.+||+ +|++.. ...+|.+|++.... .+.-..++. ......+++++..++. +++|-. .
T Consensus 105 ~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~ 182 (340)
T d1v04a_ 105 FIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMH 182 (340)
T ss_dssp EECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCCSHHHHHHHHH
T ss_pred EEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC--EEEecCccCcChhhhhhhHh
Confidence 45676 455543 45679999886443 232222232 2234578999999998 677721 1
Q ss_pred --CCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccE-EEEEecCCcEEEEecCCCC
Q 001318 475 --DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF-IFSTALDGKIKAWLYDNLG 531 (1101)
Q Consensus 475 --d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~ 531 (1101)
-++..+|....++.. .....-..-+.++++ +++++ +++-+..+.|+.|++....
T Consensus 183 ~~~~~g~v~~~~~~~~~-~~~~~l~~pNGI~~s--~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 183 LGLAWSFVTYYSPNDVR-VVAEGFDFANGINIS--PDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp TTCCCEEEEEECSSCEE-EEEEEESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred hcCCceeEEEEcCCceE-EEcCCCCccceeEEC--CCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 123344444444432 222234457788875 44444 4555667899999887544
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.95 E-value=3.6 Score=41.26 Aligned_cols=99 Identities=8% Similarity=0.060 Sum_probs=55.6
Q ss_pred CCeeEEEEecCCCEEEEEe----C------------CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEE-EEEecc
Q 001318 806 EAVPCFALSKNDSYVMSAS----G------------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDD 868 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s----d------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~d 868 (1101)
.....+++..++.++++-. + +...+|....++. ......-...+.++++| |+++| ++-+..
T Consensus 150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~-d~~~lyVa~t~~ 227 (340)
T d1v04a_ 150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISP-DGKYVYIAELLA 227 (340)
T ss_dssp SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-EEEEEEESSEEEEEECT-TSSEEEEEEGGG
T ss_pred cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-EEEcCCCCccceeEECC-CCCEEEEEeCCC
Confidence 4477888889998888742 1 1234444443333 22222334588999999 66555 445567
Q ss_pred CeEEEEEeecceEeeee--cCcccCeeEEEEcC-CCCEEEE
Q 001318 869 SSIQIYNVRVDEVKSKL--KGHSKRITGLAFSH-ALNVLVS 906 (1101)
Q Consensus 869 g~v~vwd~~~~~~~~~l--~~h~~~V~~l~~s~-dg~~l~s 906 (1101)
+.|++|++.....+... ..-.+..-.+.+.+ +|.+.+.
T Consensus 228 ~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 228 HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred CeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence 89999998753322111 11223345566654 3444433
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.18 E-value=2 Score=42.03 Aligned_cols=217 Identities=13% Similarity=0.079 Sum_probs=102.1
Q ss_pred CeEEEEECCCCceee--EecCCCCCeEEEEEecCCCcEEEEEecc---------CeEEEEEeecceEe--eeecCcccCe
Q 001318 826 GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVK--SKLKGHSKRI 892 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d---------g~v~vwd~~~~~~~--~~l~~h~~~V 892 (1101)
..+.+||.++.+-.. .+......- +++. - ++++++.|+.. ..+.+||..+.+.. ..+..-...-
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~ 95 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 95 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEECCCCeEEECCCCCCcccee-EEEE-E-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence 458899998764332 222222122 2222 2 56777777631 36678887654332 2221111111
Q ss_pred eEEEEcCCCCEEEEEeCCCc-----eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-Ee-----CCe
Q 001318 893 TGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH-----ETQ 961 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s~D~~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~-----d~~ 961 (1101)
.++. .+++.++.++.++. ...++..+.......... ... .. ...... +++.++. +. ...
T Consensus 96 ~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r----~~-~~~~~~-~~~~~~~GG~~~~~~~~~ 165 (288)
T d1zgka1 96 GVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TRR----IG-VGVAVL-NRLLYAVGGFDGTNRLNS 165 (288)
T ss_dssp EEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SCC----BS-CEEEEE-TTEEEEECCBCSSCBCCC
T ss_pred eccc--cceeeEEecceecccccceeeeeccccCccccccccc--ccc----cc-ceeeee-eecceEecCcccccccce
Confidence 1222 26677776665443 344666553321111110 000 11 222222 3444444 22 246
Q ss_pred EEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeeeecCCCcccCCCCCCCCcc
Q 001318 962 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1036 (1101)
Q Consensus 962 v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1036 (1101)
+..||..+.+....-.. .....-.+++. .++.+++.|+.+ .....+|..+.+....-. .+... ..
T Consensus 166 ~~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~r----~~ 235 (288)
T d1zgka1 166 AECYYPERNEWRMITAM-NTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP----MKHRR----SA 235 (288)
T ss_dssp EEEEETTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC----CSSCC----BS
T ss_pred EEEeecccccccccccc-ccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccC----ccCcc----cc
Confidence 88899887765433211 11111222222 245666666544 246778887766543211 11110 10
Q ss_pred ceEEEEeCCCCCEEEEEecCCc-----EEEEeccCCC
Q 001318 1037 PLVIAAHPQEPNEFALGLSDGG-----VHVFEPLESE 1068 (1101)
Q Consensus 1037 ~~~i~~~~~d~~~l~s~~~dg~-----v~vW~~~~~~ 1068 (1101)
.+++.. ++++++.|+.++. +.+||+++.+
T Consensus 236 -~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 236 -LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp -CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred -eEEEEE--CCEEEEEecCCCCeecceEEEEECCCCE
Confidence 123333 4688888877653 7889998765
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.071 Score=46.44 Aligned_cols=78 Identities=14% Similarity=0.287 Sum_probs=62.2
Q ss_pred ehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHHH
Q 001318 59 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIML 131 (1101)
Q Consensus 59 ~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 131 (1101)
++|.|+-+.||||+..|...+|..++.+--.-+.....+++++|..+....+..+++....++. .+.+-..|+
T Consensus 45 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl 124 (149)
T d2nxpa1 45 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 124 (149)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHHHHHHH
Confidence 8999999999999999999999999997555555667999999999998887777776666654 244446666
Q ss_pred HHHhh
Q 001318 132 VELKK 136 (1101)
Q Consensus 132 ~~l~~ 136 (1101)
..|++
T Consensus 125 ~~L~~ 129 (149)
T d2nxpa1 125 RHLQE 129 (149)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 66654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=2.6 Score=42.74 Aligned_cols=136 Identities=10% Similarity=-0.017 Sum_probs=83.6
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 886 (1101)
.|..++|+.| .+++..++.+..++..+.............+..+.++| ..++....+|.+.++++..++......
T Consensus 88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~ 162 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ 162 (381)
T ss_dssp TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence 5888999755 57777788899998877555544444456678888877 356667789999999998765332211
Q ss_pred C-----cccCeeEEEEcCCCCEEEEEeCCCceEEE-eCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 887 G-----HSKRITGLAFSHALNVLVSSGADSQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 887 ~-----h~~~V~~l~~s~dg~~l~s~s~D~~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
+ -.+.+.+++|++.|+.++++..++ ..+- ++... ..+ .........+.++.|-.+..++++
T Consensus 163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~-----~~~---~~p~~~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLP-----SEL---EELPVEEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCC-----HHH---HTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCc-----ccc---CCCcCCCcceeEEEEecCceEEEE
Confidence 1 235578888888888887764332 2211 11110 001 111111135678888877777765
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.64 E-value=7.5 Score=39.22 Aligned_cols=177 Identities=11% Similarity=0.095 Sum_probs=102.8
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCC-----------ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTF-----------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~-----------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
...-+++++...+++.|+...+.|...+.- ...... .-..|..++|+. + .|+.. .++.+..++
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~-d--~l~v~-~~~~l~~~~ 111 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG-D--QVLVS-TRNALYSLD 111 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET-T--EEEEE-ESSEEEEEE
T ss_pred ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC-C--EEEEE-eCCCEEEEE
Confidence 455688888888888888667888774321 111111 123689999986 4 34443 456678787
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccce----eeecCCCCCCCCCCCeEEEEcCCC
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR----FLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
..+-........-..++.++.++|. .++....++.+.++++..+...... .... ...+.+++|++.|
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~-------~~~~~~v~ws~kg 182 (381)
T d1xipa_ 112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDV-------TNSQLAVLLKDRS 182 (381)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEE-------CSSEEEEEETTSC
T ss_pred eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEe-------cCCceEEEEeCCc
Confidence 7653322222233456788888775 4556667888999999886532211 0111 1356788888888
Q ss_pred cEEEEEeCCeEEEE-EcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEE
Q 001318 952 IHFLVVHETQLAIF-ETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1000 (1101)
Q Consensus 952 ~~la~~~d~~v~vw-d~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~ 1000 (1101)
+.++++..+...+. ++.....+. ........|.++.|-.+..++++-
T Consensus 183 kq~v~~~g~~~q~k~~i~~~~~~~--~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 183 FQSFAWRNGEMEKQFEFSLPSELE--ELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHH--TSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEEeCCCceeeccCCCCccccC--CCcCCCcceeEEEEecCceEEEEE
Confidence 88877644433322 111111110 001224578899998777776644
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.49 E-value=6.9 Score=34.96 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=101.3
Q ss_pred EEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee--eecCc-------ccCeeEEEE
Q 001318 828 ISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLKGH-------SKRITGLAF 897 (1101)
Q Consensus 828 i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~--~l~~h-------~~~V~~l~~ 897 (1101)
|++-+++....-..+.... -.|.++++. |.+.+.+|+....+.+|-++.|++.. .+.+. .+-|..+.|
T Consensus 84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~ 161 (313)
T d2hu7a1 84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF 161 (313)
T ss_dssp EEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred EEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence 5556655322233333332 346666665 78899999998899999998876432 23322 123444443
Q ss_pred c-CCCCEEEEEeC-CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE----eCCeEEEEEcCCce
Q 001318 898 S-HALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLE 971 (1101)
Q Consensus 898 s-~dg~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~----~d~~v~vwd~~~~~ 971 (1101)
- +..+-++++.- .|.++|++...| ++.....+++.+. ++. .+....-+|.+.++
T Consensus 162 ~~g~~~sfF~adl~SG~lri~tpkeG-------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~ 221 (313)
T d2hu7a1 162 FGGGRVSLFTSNLSSGGLRVFDSGEG-------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGS 221 (313)
T ss_dssp EETTEEEEEEEETTTEEEEEECCSSE-------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred ecCCcceEEEEecccCCEEEecCCCC-------------------cccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence 2 33334555554 666777766553 4566667777776 332 22233356888776
Q ss_pred eeeeccCCC-----CCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeee
Q 001318 972 CVKQWVPRE-----SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 972 ~~~~~~~~~-----h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~ 1019 (1101)
..+.-.+.. ..-.|+-+-+.||+++++.+-.||.-++|. +|+.+..
T Consensus 222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~ 272 (313)
T d2hu7a1 222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEA 272 (313)
T ss_dssp EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEecC
Confidence 544422211 123566667999999999999999999987 6777754
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=89.36 E-value=0.15 Score=43.08 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=56.8
Q ss_pred ehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHHH
Q 001318 59 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIML 131 (1101)
Q Consensus 59 ~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 131 (1101)
++|.++-+.||||+..|..++|..++++--..+. ...+++++|+.+....+..+++....++. .+.+-..|+
T Consensus 27 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s~~lL~ 105 (131)
T d2j4ba1 27 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 105 (131)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHHHHhcCceEEEeCHHHHHHHH
Confidence 8999999999999999999999999997433333 36788999999888777766666554432 244445566
Q ss_pred HHHhh
Q 001318 132 VELKK 136 (1101)
Q Consensus 132 ~~l~~ 136 (1101)
..|++
T Consensus 106 ~fL~~ 110 (131)
T d2j4ba1 106 NFLEE 110 (131)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.22 E-value=5.1 Score=41.99 Aligned_cols=113 Identities=8% Similarity=0.057 Sum_probs=62.4
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC---CcEEEE--E-e-----
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---QIHFLV--V-H----- 958 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---g~~la~--~-~----- 958 (1101)
..-++|+|.|||++|++--..|.|++++..++......-+...............++|+|+ ..++.. . .
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~ 106 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence 3567999999999998875578999998877654332221111111112246788999996 333333 1 1
Q ss_pred C----C--eEEEEEcCCce-------eeeeccCCCCCCCeeEEEEcCCCCEEEEEEc
Q 001318 959 E----T--QLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQLVYACFL 1002 (1101)
Q Consensus 959 d----~--~v~vwd~~~~~-------~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~ 1002 (1101)
+ . .+.-+...... .+..............|+|.|||.+.++.++
T Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 0 1 13333322211 1111111121234578999999988776654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.31 E-value=6.8 Score=37.76 Aligned_cols=177 Identities=11% Similarity=0.003 Sum_probs=80.9
Q ss_pred eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCe-----EEEEEeecceEeeee--cCcccCeeEEEEcC
Q 001318 827 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS-----IQIYNVRVDEVKSKL--KGHSKRITGLAFSH 899 (1101)
Q Consensus 827 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~-----v~vwd~~~~~~~~~l--~~h~~~V~~l~~s~ 899 (1101)
.+.+||..+.+....-......-...+... ++++++.|+.++. ...||..+..-...- .........+ . .
T Consensus 71 ~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~-~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~-~ 147 (288)
T d1zgka1 71 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVA-V-L 147 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE-E-E
T ss_pred hhhhcccccccccccccccceecceecccc-ceeeEEecceecccccceeeeeccccCccccccccccccccceee-e-e
Confidence 477888876543322111111111112222 5677777765543 334555544322111 1111111112 2 2
Q ss_pred CCCEEEEEeCC-----CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeC-----CeEEEEEcC
Q 001318 900 ALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE-----TQLAIFETT 968 (1101)
Q Consensus 900 dg~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d-----~~v~vwd~~ 968 (1101)
++..++.++.+ ..+..||..+.+.......... ..-...+. .+++.++. +.+ .....||..
T Consensus 148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~ 219 (288)
T d1zgka1 148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-------RSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVE 219 (288)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-------CBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred eecceEecCcccccccceEEEeeccccccccccccccc-------cccccccc-eeeeEEEecCccccccccceeeeeec
Confidence 45566666553 3467888776442211111100 11122222 23444444 322 357788887
Q ss_pred CceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe-----EEEEEcCCcee
Q 001318 969 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKL 1016 (1101)
Q Consensus 969 ~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~-----v~vwd~~~~~~ 1016 (1101)
+.+....-.. .....-.+++ .-++++++.|+.++. |.+||+.+.+-
T Consensus 220 ~~~~~~~~~~-p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 270 (288)
T d1zgka1 220 TETWTFVAPM-KHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 270 (288)
T ss_dssp TTEEEECCCC-SSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred ceeeecccCc-cCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence 7665443221 1111112333 337888888875543 88999987653
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=82.37 E-value=0.28 Score=41.57 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=57.8
Q ss_pred eehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHH
Q 001318 58 KIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIM 130 (1101)
Q Consensus 58 ~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l 130 (1101)
.++|.++-+.||||+..+ ..+|..++.+--..+.....+++++|+.+.+..+..+++....++. .+.+-..|
T Consensus 28 ~lLyPvFvh~yL~Lv~~~-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s~~lL 106 (134)
T d2j49a1 28 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLL 106 (134)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHHHcCCeEEEEcHHHHHHH
Confidence 389999999999999986 4689999987555555556888999999988877776666665543 24454666
Q ss_pred HHHHhh
Q 001318 131 LVELKK 136 (1101)
Q Consensus 131 ~~~l~~ 136 (1101)
+..|++
T Consensus 107 l~fL~~ 112 (134)
T d2j49a1 107 LYFLNE 112 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666665
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=82.33 E-value=16 Score=32.48 Aligned_cols=208 Identities=13% Similarity=0.170 Sum_probs=104.9
Q ss_pred CCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEE
Q 001318 356 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS 435 (1101)
Q Consensus 356 dg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd 435 (1101)
++..|++++...|.|.++-+..++..... ..+|.... .|.. +-|..+.+-|
T Consensus 24 ~~d~ll~~~~seG~vni~~l~g~~~vkLt----------------------kePI~~~~-~Pk~------~ldfi~f~RD 74 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYDGGETVKLN----------------------REPINSVL-DPHY------GVGRVILVRD 74 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEESSSSCEECC----------------------SSCCSEEC-EECT------TBSEEEEEEE
T ss_pred cCCcEEEEEeccceEEEEEEeCCEEEEEe----------------------cccccCcC-CCcc------CcceEEEEee
Confidence 34447888988999999998888765421 11222111 1110 1123344445
Q ss_pred ccCCceeeeeee-----------eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE--EecCc-------
Q 001318 436 YHGGDEVRQHLE-----------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGH------- 495 (1101)
Q Consensus 436 ~~~~~~~~~~~~-----------l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h------- 495 (1101)
+..|+....... +.. ..+|.-+...-|++. ++.+|+......+|-++.|+... .+.+.
T Consensus 75 V~kGkE~Hai~~~Nlk~~GEE~~i~s-pk~vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~ 152 (313)
T d2hu7a1 75 VSKGAEQHALFKVNTSRPGEEQRLEA-VKPMRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR 152 (313)
T ss_dssp CSTTSCCEEEEEEETTSTTCEEECTT-SCSBEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE
T ss_pred hhcCcceeeEEEEccCCCCeeeEecC-CceEEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEecc
Confidence 555544332211 211 223444444446666 67777777778888888886533 22221
Q ss_pred ccCeEEEeeeecCCccEEEEEec-CCcEEEEecCCCCceeeecCCCCcee----------EEEEccCCce---------E
Q 001318 496 EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCT----------TMAYSADGTR---------T 555 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~----------~~~~s~~~~~---------~ 555 (1101)
.+.|..+.+. .++..-++++.. .|.+++++...+............|. -+.+.+.... -
T Consensus 153 ~d~I~G~g~~-~g~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd 231 (313)
T d2hu7a1 153 GDLIAGLGFF-GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKD 231 (313)
T ss_dssp TTEEEEEEEE-ETTEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCH
T ss_pred CCeEEEEeee-cCCcceEEEEecccCCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCccc
Confidence 1223334432 233344556655 78888887655433332222222221 1122222110 0
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT 597 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 597 (1101)
+.......+.-+-+.|++++++.+-.||.-++|. +|+.+.
T Consensus 232 ~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in 271 (313)
T d2hu7a1 232 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVE 271 (313)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred ceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEec
Confidence 0111222344455788888778888888877776 455443
|