Citrus Sinensis ID: 001334
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1097 | 2.2.26 [Sep-21-2011] | |||||||
| O81635 | 987 | Kinesin-4 OS=Arabidopsis | no | no | 0.620 | 0.689 | 0.526 | 0.0 | |
| P46875 | 754 | Kinesin-3 OS=Arabidopsis | no | no | 0.305 | 0.444 | 0.467 | 7e-83 | |
| P46864 | 745 | Kinesin-2 OS=Arabidopsis | no | no | 0.305 | 0.449 | 0.458 | 2e-80 | |
| P79955 | 643 | Carboxy-terminal kinesin | N/A | no | 0.318 | 0.542 | 0.442 | 3e-78 | |
| P45962 | 598 | Kinesin-like protein klp- | yes | no | 0.309 | 0.566 | 0.444 | 2e-77 | |
| Q9BVG8 | 833 | Kinesin-like protein KIFC | no | no | 0.320 | 0.422 | 0.463 | 4e-77 | |
| O35231 | 824 | Kinesin-like protein KIFC | yes | no | 0.322 | 0.429 | 0.451 | 3e-76 | |
| F4JGP4 | 790 | Kinesin-5 OS=Arabidopsis | no | no | 0.305 | 0.424 | 0.442 | 2e-75 | |
| P28739 | 770 | Kinesin-like protein klpA | yes | no | 0.309 | 0.441 | 0.448 | 2e-75 | |
| Q07970 | 793 | Kinesin-1 OS=Arabidopsis | no | no | 0.304 | 0.421 | 0.436 | 3e-75 |
| >sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2 | Back alignment and function desciption |
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Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/725 (52%), Positives = 498/725 (68%), Gaps = 44/725 (6%)
Query: 9 LPKEPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENM 68
P EPSEEEFRL LR+G++LCNVLNKVNPG+V KVVE P +GAA SA QYFEN+
Sbjct: 66 FPGEPSEEEFRLGLRSGIVLCNVLNKVNPGSVSKVVEAPD---DVADGAALSAFQYFENI 122
Query: 69 RNFLVAVKDMQLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKQAGGIGVWRYGGTVKIT 128
RNFLVA+++M L +FEASD+EKGG S ++V+CIL LK Y EWK G G WRYG +K
Sbjct: 123 RNFLVAIEEMGLPSFEASDMEKGGKSIRIVNCILALKSYSEWKLKGENGPWRYGSNMK-H 181
Query: 129 SFPNRSPSLVGSESTDESFDESESSQYEQLLEFLHLSNEVSLE-ESKTANAL--AFLFDR 185
+F +R L + E F S S Q + L +S + +S++ N L +F+ DR
Sbjct: 182 NFGSRKLFL---RKSSEPFVSSISRT--QSTDMLSTDQPLSSDGDSRSINGLVRSFIADR 236
Query: 186 FGLRLLQAYLRESNGIEEFPLNAMIIDTLLGKVVKDFSAVLVSQGTQLGLFLKKILKGE- 244
E+ P +++++L KV+++ L + K I + +
Sbjct: 237 --------------KHEDIP---NVVESVLNKVMEEVQQRLSIHNEMMKSSSKPIPEDDS 279
Query: 245 -VGSLSKAEFMEAISQYLGRKTSLVSGDHSKFCVCGEKREVIQHSISRSCDHAELTDRHQ 303
++ +++ +A + S KF +R +H + ++ Q
Sbjct: 280 SCETVVRSQLCDARQHEEAEENSPPQVVEKKF-----QRTNFEHH-----EEQKILLNQQ 329
Query: 304 KQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQ 363
K +QELK TK +K +Q ++E+ + L ++ L A++ Y++VLEENR LYN VQ
Sbjct: 330 KHIQELKQTLYTTKAGMKLLQMKYQEDFFHLGKHLNGLAYAATGYKRVLEENRKLYNLVQ 389
Query: 364 DLKGTIRVYCRVRPFLPGQ-SNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAP 422
DLKG IRVYCRVRPFLPGQ S G S V+ I E G I + P K GK +K F+FNKVF P
Sbjct: 390 DLKGNIRVYCRVRPFLPGQESGGLSAVEDIDE-GTITIRVPSKYGKAGQKPFMFNKVFGP 448
Query: 423 NVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRD 482
+ +QE+++ D QPLVRSVLDG+NVCIFAYGQTGSGKT+TM+GP EE+ GVNYRAL D
Sbjct: 449 SATQEEVFSDMQPLVRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALAD 508
Query: 483 LFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLI 542
LF +SN R D YE+ VQM+EIYNEQVRDLL DG +RL+IRN + NG+NVP+ASL+
Sbjct: 509 LFLLSNQRKDTTSYEISVQMLEIYNEQVRDLLAQDGQTKRLEIRNNSH-NGINVPEASLV 567
Query: 543 PVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVD 602
PV+ST+DVI+LM +G NRAV +TA+N+RSSRSHS +TVHV GR+L +GSIL G +HLVD
Sbjct: 568 PVSSTDDVIQLMDLGHMNRAVSSTAMNDRSSRSHSCVTVHVQGRDLTSGSILHGSMHLVD 627
Query: 603 LAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLG 662
LAGSERVDKSE G+RLKEAQHIN+SLSALGDVIS+L+QK++H+PYRNSKLTQ+LQDSLG
Sbjct: 628 LAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISSLSQKTSHVPYRNSKLTQLLQDSLG 687
Query: 663 GHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKESGEIRELREEISNLKQ 722
G AKTLMFVHI+PE + +GETISTLKFAERV S+ELGAAR NK++ E++EL+E+I+NLK
Sbjct: 688 GSAKTLMFVHISPEPDTLGETISTLKFAERVGSVELGAARVNKDNSEVKELKEQIANLKM 747
Query: 723 TLEKK 727
L +K
Sbjct: 748 ALVRK 752
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Microtubule-binding motor protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46875|ATK3_ARATH Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1 | Back alignment and function description |
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| >sp|P46864|ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1 | Back alignment and function description |
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| >sp|P79955|CTK2_XENLA Carboxy-terminal kinesin 2 OS=Xenopus laevis PE=2 SV=1 | Back alignment and function description |
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| >sp|P45962|KLP3_CAEEL Kinesin-like protein klp-3 OS=Caenorhabditis elegans GN=klp-3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4 | Back alignment and function description |
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| >sp|O35231|KIFC3_MOUSE Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4 | Back alignment and function description |
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| >sp|F4JGP4|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1 | Back alignment and function description |
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| >sp|P28739|KLPA_EMENI Kinesin-like protein klpA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=klpA PE=2 SV=3 | Back alignment and function description |
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| >sp|Q07970|ATK1_ARATH Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1097 | ||||||
| 224122336 | 1129 | predicted protein [Populus trichocarpa] | 0.967 | 0.939 | 0.755 | 0.0 | |
| 255582788 | 1114 | kinesin heavy chain, putative [Ricinus c | 0.958 | 0.943 | 0.742 | 0.0 | |
| 356524393 | 1140 | PREDICTED: kinesin-4-like [Glycine max] | 0.969 | 0.933 | 0.692 | 0.0 | |
| 356537103 | 1139 | PREDICTED: kinesin-4-like [Glycine max] | 0.969 | 0.934 | 0.697 | 0.0 | |
| 224061629 | 969 | predicted protein [Populus trichocarpa] | 0.877 | 0.993 | 0.751 | 0.0 | |
| 357460265 | 1123 | Kinesin-4 [Medicago truncatula] gi|35548 | 0.944 | 0.922 | 0.671 | 0.0 | |
| 356553480 | 1138 | PREDICTED: kinesin-4-like [Glycine max] | 0.961 | 0.927 | 0.669 | 0.0 | |
| 357495197 | 1503 | Kinesin-4 [Medicago truncatula] gi|35551 | 0.958 | 0.699 | 0.638 | 0.0 | |
| 356499469 | 1125 | PREDICTED: kinesin-4-like [Glycine max] | 0.953 | 0.929 | 0.665 | 0.0 | |
| 30692267 | 1087 | kinesin-like protein 1 [Arabidopsis thal | 0.945 | 0.954 | 0.618 | 0.0 |
| >gi|224122336|ref|XP_002330598.1| predicted protein [Populus trichocarpa] gi|222872156|gb|EEF09287.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1662 bits (4305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 831/1100 (75%), Positives = 937/1100 (85%), Gaps = 39/1100 (3%)
Query: 1 MDKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQS 60
MDKGAS TLPKEPSEEEF LALRNGLILCNVLNKVNPGAVLKVV P + VQ+TEGAAQS
Sbjct: 64 MDKGASRTLPKEPSEEEFCLALRNGLILCNVLNKVNPGAVLKVV--PNLTVQSTEGAAQS 121
Query: 61 AIQYFENMRNFLVAVKDMQLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKQAGGIGVWR 120
AIQYFENMRNFLVAVKDM+LLTFEASDLEKGGSSSKVVDCILCLKGYYEWKQAGGIGVWR
Sbjct: 122 AIQYFENMRNFLVAVKDMKLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKQAGGIGVWR 181
Query: 121 YGGTVKITSFPNRSPS-LVGSESTDESFDESESSQYEQLLEFLHLSNEVSLEESKTANAL 179
YGG +KI SF SPS LVGSES DES DESESSQYEQ+LEFLHLS+EVS+EE+KTANAL
Sbjct: 182 YGGLIKIESFQKGSPSSLVGSESADESVDESESSQYEQVLEFLHLSSEVSIEETKTANAL 241
Query: 180 AFLFDRFGLRLLQAYLRESNGIEEFPLNAMIIDTLLGKVVKDFSAVLVSQGTQLGLFLKK 239
AFLFD FGLRLLQAYL+E NGIEE PLN M+IDTLL K VKDFSA+LVSQGTQLGLFLKK
Sbjct: 242 AFLFDHFGLRLLQAYLQEINGIEELPLNGMVIDTLLRKAVKDFSALLVSQGTQLGLFLKK 301
Query: 240 ILKGEVGSLSKAEFMEAISQYLGRKTSLVSGDHSKFCVCGEKREVIQHSISRSCDHAELT 299
ILKG++GSLSK EF+EAISQYL ++ SL S D SKFC+CG KRE IQH++S S H E+
Sbjct: 302 ILKGDIGSLSKNEFIEAISQYLRQRASLASSDFSKFCICGGKRETIQHTVSSSSGHTEVI 361
Query: 300 DRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLY 359
D HQKQL++L+ Y E + +VK+IQ++WEEE+ RLE +I++LEVASSS +VLEENR LY
Sbjct: 362 DLHQKQLEDLRFYYKEMRRQVKQIQADWEEEVSRLEQHIRDLEVASSSCHQVLEENRQLY 421
Query: 360 NQVQDLKGTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKV 419
NQVQDLKGTIRVYCRVRPFL GQSNGQSTVDYIGENGNIM+ NP K GK+ARK+F FNKV
Sbjct: 422 NQVQDLKGTIRVYCRVRPFLRGQSNGQSTVDYIGENGNIMIVNPLKNGKEARKVFSFNKV 481
Query: 420 FAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRA 479
F NV+QEQIY DTQPLVRSVLDG+NVCIFAYGQTGSGKTYTMSGPDLT+E+TWGVNYRA
Sbjct: 482 FGTNVTQEQIYADTQPLVRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLTSEQTWGVNYRA 541
Query: 480 LRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDA 539
LRDLFQIS TRGD+I+YEVGVQM+EIYNEQVRDLLVSDGSNRRLDIRN +Q NGLNVPDA
Sbjct: 542 LRDLFQISTTRGDVIRYEVGVQMVEIYNEQVRDLLVSDGSNRRLDIRNNSQLNGLNVPDA 601
Query: 540 SLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLH 599
S IPV+ST+DV++LM+IGQ+NRAVGATALNERSSRSHSVLTVHV G+ELV+GSILKGCLH
Sbjct: 602 SWIPVSSTQDVLDLMKIGQRNRAVGATALNERSSRSHSVLTVHVYGKELVSGSILKGCLH 661
Query: 600 LVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQD 659
+VDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS H+PYRNSKLTQVLQD
Sbjct: 662 MVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSPHVPYRNSKLTQVLQD 721
Query: 660 SLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKESGEIRELREEISN 719
SLGGHAKTLMFVHINPE N+IGETISTLKFAERV+S+ELGAARSNKE+GEIREL+EEISN
Sbjct: 722 SLGGHAKTLMFVHINPELNSIGETISTLKFAERVASVELGAARSNKETGEIRELKEEISN 781
Query: 720 LKQTLEKKEAELEQLRRGVTRNTSESQKPRAVSPFHTSESQKSRAVSPFHTSESQKPRAV 779
LK+ LE+KEAE+EQ++ G TR+T+ESQ+ RAV
Sbjct: 782 LKEALERKEAEIEQIKGGSTRSTAESQRTRAV---------------------------- 813
Query: 780 SPFHVPRYGISASLKPGI-NQPNDDSRSLEPRSTSSGKQRRSRFPSALTDKEPLPKIPLV 838
SPF+VPRYG SA+LK ++P DDSRS E RS SSGKQRRS FPS+LTDKE LP+IP +
Sbjct: 814 SPFYVPRYGASANLKSETSHRPIDDSRSSEARSCSSGKQRRSSFPSSLTDKETLPRIPFL 873
Query: 839 AEDRLGGSSKPRTSSPSVRRSISTDRGTLLRSRVKADTTENQPISRVPFPARVPVNKSIS 898
E+RL S+KPR+ SP VRRS STDRG L RSRVK + ENQP++RVPFPA VPVNKSI+
Sbjct: 874 GEERLASSTKPRSPSPPVRRSTSTDRGALSRSRVK-ERVENQPVARVPFPAIVPVNKSIA 932
Query: 899 ATPVITSSIEINNSR-VYIGSQEPAKQQDNVLDALSSLQKVSHRSKYPEHEDDQIRQALN 957
A PVI S+ N+S+ YIGSQE A +QDN+ A +LQKVS R YPEHE++Q RQALN
Sbjct: 933 AIPVIPSA--DNSSKGPYIGSQE-ALKQDNISKAFYNLQKVSTRKYYPEHEEEQCRQALN 989
Query: 958 IRQGGIRKSKPESKAKAKHQLPARFQKSDMGITLLSDMDTGEKMDEARKSDFSEPENEHS 1017
IRQGGI+KSK ESK KAK+Q+PA+F + D+G T+LSD+D GEK++E RKSD SEPENE
Sbjct: 990 IRQGGIKKSKNESKVKAKNQMPAKFHEVDVGTTMLSDIDAGEKIEEPRKSDSSEPENERL 1049
Query: 1018 FLGSPVHSELKMKKVQQNFSRNSQNLEPRGLVQPVEPFLAEKLENKLRNAATHQAQEGGK 1077
SP L +KK+Q NFS+NSQNLEPR +VQ VEP LA KLENKL N T A+E G
Sbjct: 1050 LPVSPTIGALMVKKLQMNFSKNSQNLEPR-VVQVVEPLLAGKLENKLPNNVTRNAKEAG- 1107
Query: 1078 NTSMPEFKRSRSSPRGKFLI 1097
NTSMPEF+RSRS+PRGKF I
Sbjct: 1108 NTSMPEFRRSRSTPRGKFTI 1127
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255582788|ref|XP_002532168.1| kinesin heavy chain, putative [Ricinus communis] gi|223528136|gb|EEF30205.1| kinesin heavy chain, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356524393|ref|XP_003530813.1| PREDICTED: kinesin-4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356537103|ref|XP_003537070.1| PREDICTED: kinesin-4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224061629|ref|XP_002300575.1| predicted protein [Populus trichocarpa] gi|222847833|gb|EEE85380.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357460265|ref|XP_003600414.1| Kinesin-4 [Medicago truncatula] gi|355489462|gb|AES70665.1| Kinesin-4 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356553480|ref|XP_003545084.1| PREDICTED: kinesin-4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357495197|ref|XP_003617887.1| Kinesin-4 [Medicago truncatula] gi|355519222|gb|AET00846.1| Kinesin-4 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356499469|ref|XP_003518562.1| PREDICTED: kinesin-4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|30692267|ref|NP_190059.3| kinesin-like protein 1 [Arabidopsis thaliana] gi|332644419|gb|AEE77940.1| kinesin-like protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1097 | ||||||
| TAIR|locus:2101645 | 1087 | KP1 "kinesin-like protein 1" [ | 0.764 | 0.771 | 0.655 | 5.8e-288 | |
| TAIR|locus:2061992 | 983 | AT2G47500 [Arabidopsis thalian | 0.547 | 0.611 | 0.497 | 5.9e-187 | |
| TAIR|locus:2148543 | 987 | ATK4 "kinesin 4" [Arabidopsis | 0.373 | 0.415 | 0.656 | 1.1e-181 | |
| TAIR|locus:2026639 | 1071 | AT1G63640 [Arabidopsis thalian | 0.432 | 0.442 | 0.597 | 5.3e-161 | |
| TAIR|locus:2027854 | 1025 | AT1G73860 [Arabidopsis thalian | 0.506 | 0.542 | 0.497 | 4.9e-140 | |
| TAIR|locus:2076289 | 922 | AT3G10310 [Arabidopsis thalian | 0.178 | 0.212 | 0.649 | 8.5e-138 | |
| TAIR|locus:2014129 | 1140 | AT1G18410 [Arabidopsis thalian | 0.369 | 0.355 | 0.610 | 3.1e-131 | |
| TAIR|locus:2195316 | 1010 | AT1G09170 [Arabidopsis thalian | 0.222 | 0.241 | 0.607 | 9.2e-119 | |
| ZFIN|ZDB-GENE-030131-3724 | 937 | kifc3 "kinesin family member C | 0.316 | 0.370 | 0.464 | 4.7e-78 | |
| TAIR|locus:2157533 | 754 | ATK3 "kinesin 3" [Arabidopsis | 0.369 | 0.537 | 0.417 | 1.3e-75 |
| TAIR|locus:2101645 KP1 "kinesin-like protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2766 (978.7 bits), Expect = 5.8e-288, P = 5.8e-288
Identities = 566/863 (65%), Positives = 664/863 (76%)
Query: 1 MDKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPII-AVQATEGAAQ 59
MD+GA TLP++PSE+EF LALRNGLILCNVLNKVNPG+VLKVVENPI A+Q +GAAQ
Sbjct: 1 MDQGAMETLPEKPSEDEFSLALRNGLILCNVLNKVNPGSVLKVVENPITPAIQYADGAAQ 60
Query: 60 SAIQYFENMRNFLVAVKDMQLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKQAGGIGVW 119
SAIQYFENMRNFL AV+DMQLLTF ASDLEKGGSS+KVVDCILCLKG+YEWKQAGG+GVW
Sbjct: 61 SAIQYFENMRNFLKAVEDMQLLTFGASDLEKGGSSNKVVDCILCLKGFYEWKQAGGVGVW 120
Query: 120 RYGGTVKITSFPNR--SPSLVGXXXXXXXXXXXXXXXXXXXXX-----FLHLSNEVSLEE 172
RYGGTV+I SF + SP G FLHLSNE+S EE
Sbjct: 121 RYGGTVRIVSFNRKGSSPPQYGIGSESTTDESVSLDESESSQYDQLLDFLHLSNEISAEE 180
Query: 173 SKTANALAFLFDRFGLRLLQAYLRESNGIEEFPLNAMIIDTLLGKVVKDFSAVLVSQGTQ 232
S+TA +LAFLFD F L+LL YL+ES+GI + PLN M+IDTLL +VVKDFSA+LVSQG Q
Sbjct: 181 SETAISLAFLFDHFALQLLHGYLKESDGINDMPLNEMVIDTLLNRVVKDFSAILVSQGAQ 240
Query: 233 LGLFLKKILKGEVGSLSKAEFMEAISQYLGRKTSLVSGDHSKFCVCGEKREVIQHSISR- 291
LG FL+KILK + G LS++EF+ A+ +YL + LVS + SKFC CG K E + +
Sbjct: 241 LGSFLRKILKCDNGDLSRSEFLAAVFRYLQHRKDLVSKEFSKFCKCGGKLEFSRLNAREF 300
Query: 292 SCDHAELTDRHXXXXXXXXXXXXXTKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKV 351
S H E T+ +VK++QS W++EL R+ H++K +EV SSSY KV
Sbjct: 301 SPGHVEAIGLQQKELEEVKSNFVETRSQVKQMQSEWQKELQRIVHHVKAMEVTSSSYHKV 360
Query: 352 LEENRVLYNQVQDLKGTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDAR 411
LEENR+LYN+VQDLKGTIRVYCRVRPF Q + QSTVDYIGENGNI++ NPFKQ KDAR
Sbjct: 361 LEENRLLYNEVQDLKGTIRVYCRVRPFFQEQKDMQSTVDYIGENGNIIINNPFKQEKDAR 420
Query: 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE 471
K+F FNKVF VSQEQIY+DTQP++RSVLDGFNVCIFAYGQTGSGKTYTMSGPDL E
Sbjct: 421 KIFSFNKVFGQTVSQEQIYIDTQPVIRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLMTET 480
Query: 472 TWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQA 531
TWGVNYRALRDLFQ+SN R ++ YE+GVQMIEIYNEQVRDLLVSDGS+RRLDIRN +Q
Sbjct: 481 TWGVNYRALRDLFQLSNARTHVVTYEIGVQMIEIYNEQVRDLLVSDGSSRRLDIRNNSQL 540
Query: 532 NGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTG 591
NGLNVPDA+LIPV++T DV++LMRIGQKNRAVGATALNERSSRSHSVLTVHV G+EL +G
Sbjct: 541 NGLNVPDANLIPVSNTRDVLDLMRIGQKNRAVGATALNERSSRSHSVLTVHVQGKELASG 600
Query: 592 SILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNS 651
SIL+GCLHLVDLAGSERV+KSEAVGERLKEAQHIN+SLSALGDVI ALAQKS+H+PYRNS
Sbjct: 601 SILRGCLHLVDLAGSERVEKSEAVGERLKEAQHINKSLSALGDVIYALAQKSSHVPYRNS 660
Query: 652 KLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKESGEIR 711
KLTQVLQDSLGG AKTLMFVHINPE NA+GETISTLKFA+RV+SIELGAARSNKE+GEIR
Sbjct: 661 KLTQVLQDSLGGQAKTLMFVHINPEVNAVGETISTLKFAQRVASIELGAARSNKETGEIR 720
Query: 712 ELREEISNLKQTLEKKEAELEQLRRGVTRNTSESQKPRAVSPFH---TSESQKSRAVS-- 766
+L++EIS+LK +EKKEAELEQLR G RNT+E Q+ RAVSPFH T ++A +
Sbjct: 721 DLKDEISSLKSAMEKKEAELEQLRSGSIRNTTECQRARAVSPFHLPRTGNGAGTKAEASP 780
Query: 767 -PFHTSESQKPRAVSPFHVPRYGISASLK---PGINQPNDDSRSLEP----RSTSSGKQR 818
P + S + R+ S + G ++L+ PN L P RS S+ +
Sbjct: 781 QPNDGTRSYETRSCSTGKQRKSGFPSALRNREASPRMPNLAEERLNPSPSRRSLSTDRAS 840
Query: 819 --RSRFPSALTDKEPLPKIPLVA 839
+SR +T P+ + P A
Sbjct: 841 TIKSRNKPDVTQNLPVSRTPFPA 863
|
|
| TAIR|locus:2061992 AT2G47500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2148543 ATK4 "kinesin 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2026639 AT1G63640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2027854 AT1G73860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2076289 AT3G10310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2014129 AT1G18410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2195316 AT1G09170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-3724 kifc3 "kinesin family member C3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2157533 ATK3 "kinesin 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1097 | |||
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 1e-158 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-143 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-137 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-122 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 1e-100 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 4e-99 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 1e-93 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 1e-90 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 9e-88 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 2e-85 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 2e-80 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 1e-73 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 5e-73 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 5e-72 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 4e-71 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 6e-71 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 1e-67 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 3e-56 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 4e-43 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 2e-09 | |
| smart00033 | 101 | smart00033, CH, Calponin homology domain | 4e-06 | |
| cd00014 | 107 | cd00014, CH, Calponin homology domain; actin-bindi | 3e-05 | |
| pfam00307 | 104 | pfam00307, CH, Calponin homology (CH) domain | 3e-04 |
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
Score = 470 bits (1212), Expect = e-158
Identities = 169/337 (50%), Positives = 232/337 (68%), Gaps = 11/337 (3%)
Query: 366 KGTIRVYCRVRPFLPGQSNGQ-STVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNV 424
KG IRV+CRVRP LP +S S + + E+G + + +G +K F F++VF P+
Sbjct: 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELS---KGTGKKKSFSFDRVFDPDA 57
Query: 425 SQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLF 484
SQE ++ + PLV+S LDG+NVCIFAYGQTGSGKTYTM GP E G+ RAL LF
Sbjct: 58 SQEDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGP----PENPGIIPRALEQLF 113
Query: 485 QISNTRGDM-IKYEVGVQMIEIYNEQVRDLLVSDGSNR-RLDIRNTAQANGLNVPDASLI 542
+ + Y + M+EIYNE +RDLL + + + +L+I++ ++ V + + +
Sbjct: 114 NTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSK-GETYVTNLTEV 172
Query: 543 PVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVD 602
PV+S E+V L+ +G KNR+V +T +NE SSRSH+V + + G L TG +G L+LVD
Sbjct: 173 PVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVD 232
Query: 603 LAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLG 662
LAGSER+ KS A G+RLKEAQ IN+SLSALGDVISAL K +H+PYRNSKLT +LQDSLG
Sbjct: 233 LAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLG 292
Query: 663 GHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELG 699
G++KTLMFV+I+P + + ET+ +L+FA RV S+ELG
Sbjct: 293 GNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329
|
Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329 |
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|214479 smart00033, CH, Calponin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) | Back alignment and domain information |
|---|
| >gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1097 | |||
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| KOG2046 | 193 | consensus Calponin [Cytoskeleton] | 99.79 | |
| COG5199 | 178 | SCP1 Calponin [Cytoskeleton] | 99.63 | |
| cd00014 | 107 | CH Calponin homology domain; actin-binding domain | 99.41 | |
| KOG2996 | 865 | consensus Rho guanine nucleotide exchange factor V | 99.38 | |
| smart00033 | 103 | CH Calponin homology domain. Actin binding domains | 99.23 | |
| KOG2128 | 1401 | consensus Ras GTPase-activating protein family - I | 99.21 | |
| COG5261 | 1054 | IQG1 Protein involved in regulation of cellular mo | 99.18 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.15 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 99.11 | |
| PF00307 | 108 | CH: Calponin homology (CH) domain; InterPro: IPR00 | 99.04 | |
| PF11971 | 85 | CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T | 97.61 | |
| PF06395 | 89 | CDC24: CDC24 Calponin; InterPro: IPR010481 This is | 96.02 | |
| KOG0046 | 627 | consensus Ca2+-binding actin-bundling protein (fim | 96.0 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 92.72 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 90.53 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 89.26 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 87.63 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 86.98 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 86.95 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 86.48 | |
| PRK06620 | 214 | hypothetical protein; Validated | 86.02 | |
| PRK09039 | 343 | hypothetical protein; Validated | 85.82 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 85.76 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 85.29 | |
| PRK12377 | 248 | putative replication protein; Provisional | 85.26 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 84.65 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 84.42 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 83.97 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 83.87 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 83.66 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 83.5 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 83.49 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 83.41 | |
| PRK08116 | 268 | hypothetical protein; Validated | 82.56 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 81.61 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 81.6 | |
| COG5069 | 612 | SAC6 Ca2+-binding actin-bundling protein fimbrin/p | 81.45 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 80.31 |
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-94 Score=858.36 Aligned_cols=423 Identities=49% Similarity=0.692 Sum_probs=392.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhcCCCCEEEEE
Q 001334 297 ELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVL---EENRVLYNQVQDLKGTIRVYC 373 (1097)
Q Consensus 297 ~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l---~err~L~N~lqelKGnIRV~c 373 (1097)
+-++.++.++..|+..+..++.++..+...+++.+......+..|+.....|.... .+||+|||+++||||||||||
T Consensus 241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~C 320 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFC 320 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEE
Confidence 33889999999999999999999999999999999999999999988888888777 889999999999999999999
Q ss_pred EeCCCCCCCCCC-CCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeec
Q 001334 374 RVRPFLPGQSNG-QSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYG 452 (1097)
Q Consensus 374 RVRP~~~~E~~~-~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYG 452 (1097)
||||+++++... ...+...++.+.+.+..|....+...+.|.||+||+|.++|++||.++.|+|++||||||+||||||
T Consensus 321 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYG 400 (670)
T KOG0239|consen 321 RVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYG 400 (670)
T ss_pred EecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEec
Confidence 999999988764 4555555555678888887766666668999999999999999999999999999999999999999
Q ss_pred cCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCcccceecccCCC
Q 001334 453 QTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQAN 532 (1097)
Q Consensus 453 QTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~l~Ir~~~~~~ 532 (1097)
||||||||||.|+ .++++|||||++++||..+.....+|.|.+.+||+|||||.|+|||.++....++.|+.+.. +
T Consensus 401 QTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~-~ 476 (670)
T KOG0239|consen 401 QTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAE-G 476 (670)
T ss_pred ccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCC-C
Confidence 9999999999996 35788999999999999999888899999999999999999999998765567888998875 5
Q ss_pred CeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEEeecCCCcccccc
Q 001334 533 GLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKS 612 (1097)
Q Consensus 533 G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~LVDLAGSER~~ks 612 (1097)
+++|++++.+.|.+.+++..+|+.|.+||++++|.+|++|||||+||+|+|.+.+..++....|+|+|||||||||++++
T Consensus 477 ~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s 556 (670)
T KOG0239|consen 477 NLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKS 556 (670)
T ss_pred ceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHH
Q 001334 613 EAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAER 692 (1097)
Q Consensus 613 ~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsR 692 (1097)
+++|+|++|+++||+||++||+||.||+++..||||||||||+||||||||++||+|||+|||...++.||+++|+||+|
T Consensus 557 ~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~r 636 (670)
T KOG0239|consen 557 GVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATR 636 (670)
T ss_pred CCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccccchhHHHHHHHHHHHHHHH
Q 001334 693 VSSIELGAARSNKESGEIRELREEISNLKQT 723 (1097)
Q Consensus 693 ak~I~~~~~~~~~~~~~i~eLreEI~~LK~~ 723 (1097)
|+.+++++++..........+...+..++..
T Consensus 637 v~~~~lG~a~~~~~~~~~~~~~~~~~~~~~~ 667 (670)
T KOG0239|consen 637 VRSVELGSARKQVSTSDDVSLKRFGQLEKLS 667 (670)
T ss_pred hhceecccccccccccchhhhhhhhhhhhhh
Confidence 9999999999988888887777776666544
|
|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >KOG2046 consensus Calponin [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5199 SCP1 Calponin [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) | Back alignment and domain information |
|---|
| >KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00033 CH Calponin homology domain | Back alignment and domain information |
|---|
| >KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] | Back alignment and domain information |
|---|
| >PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins | Back alignment and domain information |
|---|
| >PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain | Back alignment and domain information |
|---|
| >KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1097 | ||||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 8e-74 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 1e-73 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 2e-72 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 1e-67 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-67 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 4e-67 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 6e-67 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 3e-66 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 3e-66 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 2e-65 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 2e-65 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 2e-65 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 2e-64 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 3e-63 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 4e-63 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 5e-63 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 5e-63 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-61 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 3e-58 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 8e-58 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 4e-56 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 5e-56 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 2e-55 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 5e-55 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 2e-54 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 4e-53 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 6e-53 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 2e-52 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 5e-52 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 2e-51 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-51 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 3e-51 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 4e-51 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 1e-50 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 1e-50 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 1e-50 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 1e-50 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 1e-50 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 1e-50 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 1e-50 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 1e-50 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 2e-50 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 3e-50 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 9e-50 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-49 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 3e-47 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 7e-47 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 1e-41 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 4e-41 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 3e-38 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 7e-38 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 6e-35 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 3e-34 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 5e-34 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 3e-32 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 2e-29 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 3e-14 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 1e-13 | ||
| 1wyr_A | 121 | Solution Structure Of The Ch Domain Of Human Rho Gu | 6e-05 |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
|
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine Nucleotide Exchange Factor 6 Length = 121 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
Score = 589 bits (1520), Expect = 0.0
Identities = 152/421 (36%), Positives = 225/421 (53%), Gaps = 12/421 (2%)
Query: 309 LKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQDLKGT 368
+ + EV ++ EE L E LE + E + L+N V DL+
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60
Query: 369 IRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVT--NPFKQGKDARKMFLFNKVFAPNVSQ 426
IRV+CR+RP L + N + + + + + K +++F F++VF P SQ
Sbjct: 61 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 120
Query: 427 EQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQ- 485
I+ PL++S LDG+N+CIFAYGQTGSGKTYTM G E+ GV R + LF
Sbjct: 121 SDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----PESVGVIPRTVDLLFDS 176
Query: 486 ISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVT 545
I R +YE+ +EIYNE + DLL ++ + + + + N + V + + V
Sbjct: 177 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNK-NDIYVSNITEETVL 235
Query: 546 STEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAG 605
+ LM + NRA +TA NERSSRSH+V + ++GR I G ++LVDLAG
Sbjct: 236 DPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAG 295
Query: 606 SERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHA 665
SE R+ E ++INRSLS L +VI AL QK HIPYRNSKLT +L SLGG++
Sbjct: 296 SES----PKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNS 351
Query: 666 KTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKESGEIRELREEISNLKQTLE 725
KTLMF++++P + E++ +L+FA V+S ++ A+ N+ SN + +
Sbjct: 352 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVANSSTQSNNSGSFD 411
Query: 726 K 726
K
Sbjct: 412 K 412
|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
| >1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Length = 108 | Back alignment and structure |
|---|
| >1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Length = 144 | Back alignment and structure |
|---|
| >1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 136 | Back alignment and structure |
|---|
| >1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 159 | Back alignment and structure |
|---|
| >2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 203 | Back alignment and structure |
|---|
| >2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
| >1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 146 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
| >3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1097 | |||
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.98 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.94 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.94 | |
| 1ujo_A | 144 | Transgelin; CH domain, actin binding, structural g | 99.87 | |
| 1wyr_A | 121 | RHO guanine nucleotide exchange factor 6; CH domai | 99.87 | |
| 1wym_A | 155 | Transgelin-2; CH domain, F-actin binding, all heli | 99.87 | |
| 2l3g_A | 126 | RHO guanine nucleotide exchange factor 7; structur | 99.87 | |
| 1p2x_A | 159 | RNG2 protein, RAS GTPase-activating-like protein; | 99.86 | |
| 1h67_A | 108 | Calponin alpha; cytoskeleton, calponin homology do | 99.85 | |
| 1wyp_A | 136 | Calponin 1; CH domain, F-actin binding, all-alpha, | 99.85 | |
| 1p5s_A | 203 | RAS GTPase-activating-like protein RNG2; alpha-hel | 99.84 | |
| 2rr8_A | 190 | Iqgap1 protein; F-actin binding protein, protein b | 99.84 | |
| 3i6x_A | 193 | P195, RAS GTPase-activating-like protein iqgap1; a | 99.83 | |
| 1wyn_A | 146 | Calponin-2; CH domain, F-actin binding, all alpha | 99.82 | |
| 3ky9_A | 587 | Proto-oncogene VAV; calponin homology domain, DBL | 99.69 | |
| 2yrn_A | 129 | Neuron navigator 2 isoform 4; calponin homolgy dom | 98.99 | |
| 1pxy_A | 506 | Fimbrin-like protein; calponin homology, F-actin-b | 98.61 | |
| 1aoa_A | 275 | T-fimbrin; actin-binding protein, calcium-binding, | 98.45 | |
| 2qjz_A | 123 | Microtubule-associated protein RP/EB family member | 98.44 | |
| 1wyo_A | 159 | Protein EB3, microtubule-associated protein RP/EB | 98.39 | |
| 1rt8_A | 513 | Fimbrin; filamentous actin binding domain (ABD), c | 98.24 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 98.24 | |
| 1wku_A | 254 | Alpha-actinin 3; calponin homology domain, actin b | 98.11 | |
| 2wa7_A | 245 | Filamin-B; disease mutation, skeletal dysplasia, s | 97.97 | |
| 1dxx_A | 246 | Dystrophin; structural protein, muscular dystrophy | 97.76 | |
| 1sh5_A | 245 | Plectin 1, PLTN, PCN; actin-binding domain, calpon | 97.75 | |
| 3f7p_A | 296 | Plectin-1; plakin, hemidesmosome, cell adhesion, e | 97.67 | |
| 1rt8_A | 513 | Fimbrin; filamentous actin binding domain (ABD), c | 97.58 | |
| 3hoc_A | 272 | Filamin-A; calponin homology domain, actin binding | 97.38 | |
| 2vzc_A | 131 | Alpha-parvin; membrane, cytoplasm, cytoskeleton, c | 96.94 | |
| 1sjj_A | 863 | Actinin; 3-helix bundle, calponin homology domain, | 96.9 | |
| 1pxy_A | 506 | Fimbrin-like protein; calponin homology, F-actin-b | 96.42 | |
| 1wjo_A | 124 | T-plastin; CH domain, actin binding, structural ge | 96.31 | |
| 4b7l_A | 347 | Filamin-B; structural protein, FR 1 filamin hinge | 95.82 | |
| 2d89_A | 119 | EHBP1 protein; all alpha, calponin homology domain | 94.79 | |
| 1wyl_A | 116 | NEDD9 interacting protein with calponin homology a | 94.22 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 93.39 | |
| 2d87_A | 128 | Smoothelin splice isoform L2; all alpha, calponin | 92.13 | |
| 2d88_A | 121 | Protein mical-3; all alpha, calponin homology doma | 91.94 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 91.66 | |
| 1wyq_A | 127 | Spectrin beta chain, brain 2; NPPSFA, structural g | 90.3 | |
| 1wku_A | 254 | Alpha-actinin 3; calponin homology domain, actin b | 90.21 | |
| 1bkr_A | 109 | Spectrin beta chain; filamentous actin-binding dom | 89.95 | |
| 2r8u_A | 268 | Microtubule-associated protein RP/EB family member | 89.75 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 88.72 | |
| 1sh5_A | 245 | Plectin 1, PLTN, PCN; actin-binding domain, calpon | 88.6 | |
| 1bhd_A | 118 | Utrophin; calponin homology, actin binding, struct | 88.58 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 88.57 | |
| 2wa7_A | 245 | Filamin-B; disease mutation, skeletal dysplasia, s | 87.13 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 85.37 | |
| 4gkp_A | 275 | Spindle POLE BODY-associated protein VIK1; kinesin | 84.94 | |
| 1aoa_A | 275 | T-fimbrin; actin-binding protein, calcium-binding, | 84.06 | |
| 1dxx_A | 246 | Dystrophin; structural protein, muscular dystrophy | 83.97 | |
| 3hoc_A | 272 | Filamin-A; calponin homology domain, actin binding | 81.84 | |
| 4b7l_A | 347 | Filamin-B; structural protein, FR 1 filamin hinge | 81.5 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 80.98 |
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-92 Score=809.74 Aligned_cols=348 Identities=42% Similarity=0.646 Sum_probs=298.6
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCEEEEEEeCCCCCC-CCCCCCceEEec--C-CC--cEEEeCCCCCCCCCceeEeece
Q 001334 345 SSSYQKVLEENRVLYNQVQDLKGTIRVYCRVRPFLPG-QSNGQSTVDYIG--E-NG--NIMVTNPFKQGKDARKMFLFNK 418 (1097)
Q Consensus 345 ~~~~~~~l~err~L~N~lqelKGnIRV~cRVRP~~~~-E~~~~s~v~~~~--~-~~--~i~I~~p~~~gk~~~k~F~FD~ 418 (1097)
...|.+...+||+|||+++|+||||||||||||+++. +......+.+.. + .+ .+.+... .+....+.|.||+
T Consensus 37 ~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~F~FD~ 114 (403)
T 4etp_A 37 NEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKI--QNTAQVHEFKFDK 114 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEEC--SSSCEEEEEEESE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecC--CCCcCceEEEcCE
Confidence 4456667778999999999999999999999999877 333334444331 1 11 2233322 2233468899999
Q ss_pred eeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhh-cCCceEEE
Q 001334 419 VFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNT-RGDMIKYE 497 (1097)
Q Consensus 419 VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~-~~~~~~y~ 497 (1097)
||+++++|++||+++.|+|+++|+|||+||||||||||||||||+|++ .|||||++++||..+.. ....|.|.
T Consensus 115 VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~------~Giipr~~~~lF~~i~~~~~~~~~~~ 188 (403)
T 4etp_A 115 IFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPG------DGIIPSTISHIFNWINKLKTKGWDYK 188 (403)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTT------TSHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred EECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCCC------CccchhHHHHHHHHHHhhhccCceEE
Confidence 999999999999999999999999999999999999999999999953 59999999999998765 45578999
Q ss_pred EEEEEEEEecceeeeccCCCC-------CCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcC
Q 001334 498 VGVQMIEIYNEQVRDLLVSDG-------SNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNE 570 (1097)
Q Consensus 498 V~VS~lEIYNE~V~DLL~~~~-------~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~ 570 (1097)
|+|||+|||||+|+|||.+.. ....+.++.++..+|++|.|++++.|.|++|++.+|..|.++|++++|.||+
T Consensus 189 v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~ 268 (403)
T 4etp_A 189 VNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNE 268 (403)
T ss_dssp EEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHH
T ss_pred EEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCc
Confidence 999999999999999998764 2345678887776789999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEEEeeeeccCceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCC---Ccc
Q 001334 571 RSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA---HIP 647 (1097)
Q Consensus 571 ~SSRSHaIftI~V~~~~~~~g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~---hIP 647 (1097)
.|||||+||+|+|.+.+...+....|+|+|||||||||+.++++.|+|++|+++||+||++||+||.||+++.. |||
T Consensus 269 ~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiP 348 (403)
T 4etp_A 269 HSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIP 348 (403)
T ss_dssp HHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCC
T ss_pred ccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCC
Confidence 99999999999999998888888899999999999999999999999999999999999999999999987654 999
Q ss_pred CCCCchhhhhhhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhccccccc
Q 001334 648 YRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGA 700 (1097)
Q Consensus 648 YRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~ 700 (1097)
|||||||+||||+|||||+|+|||||||+..+++||++||+||+||++|++++
T Consensus 349 yRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~ 401 (403)
T 4etp_A 349 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401 (403)
T ss_dssp GGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred cccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999999999876
|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A | Back alignment and structure |
|---|
| >2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B | Back alignment and structure |
|---|
| >1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 | Back alignment and structure |
|---|
| >2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A | Back alignment and structure |
|---|
| >1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K | Back alignment and structure |
|---|
| >2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A | Back alignment and structure |
|---|
| >1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A | Back alignment and structure |
|---|
| >1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A | Back alignment and structure |
|---|
| >3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
| >1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A | Back alignment and structure |
|---|
| >2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 | Back alignment and structure |
|---|
| >1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B | Back alignment and structure |
|---|
| >1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A | Back alignment and structure |
|---|
| >4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A | Back alignment and structure |
|---|
| >2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A | Back alignment and structure |
|---|
| >2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K | Back alignment and structure |
|---|
| >1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A | Back alignment and structure |
|---|
| >2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A | Back alignment and structure |
|---|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A | Back alignment and structure |
|---|
| >1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A | Back alignment and structure |
|---|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A | Back alignment and structure |
|---|
| >1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 | Back alignment and structure |
|---|
| >1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A | Back alignment and structure |
|---|
| >3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A | Back alignment and structure |
|---|
| >4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A | Back alignment and structure |
|---|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1097 | ||||
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-86 | |
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 6e-85 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 7e-82 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 2e-81 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 5e-80 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 6e-80 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 1e-76 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 1e-75 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 6e-72 | |
| d1ujoa_ | 144 | a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [Ta | 5e-19 | |
| d1h67a_ | 108 | a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [T | 2e-18 | |
| d1p2xa_ | 159 | a.40.1.1 (A:) Ras GTPase-activating-like protein r | 3e-10 |
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 282 bits (722), Expect = 1e-86
Identities = 140/371 (37%), Positives = 202/371 (54%), Gaps = 12/371 (3%)
Query: 328 EEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQDLKGTIRVYCRVRPFLPGQSNGQS 387
EE L E LE + E + L+N V DL+G IRV+CR+RP L + N
Sbjct: 6 EELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMC 65
Query: 388 TVDYIGENGNIMVTNP--FKQGKDARKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFN 445
+ + + + + K +++F F++VF P SQ I+ PL++S LDG+N
Sbjct: 66 CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYN 125
Query: 446 VCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRG-DMIKYEVGVQMIE 504
+CIFAYGQTGSGKTYTM G E+ GV R + LF +YE+ +E
Sbjct: 126 ICIFAYGQTGSGKTYTMDGVP----ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLE 181
Query: 505 IYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVG 564
IYNE + DLL ++ + + + + + V + LM + NRA
Sbjct: 182 IYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITE-ETVLDPNHLRHLMHTAKMNRATA 240
Query: 565 ATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQH 624
+TA NERSSRSH+V + ++GR I G ++LVDLA +S R+ E ++
Sbjct: 241 STAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLA----GSESPKTSTRMTETKN 296
Query: 625 INRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETI 684
INRSLS L +VI AL QK HIPYRNSKLT +L SLGG++KTLMF++++P + E++
Sbjct: 297 INRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESV 356
Query: 685 STLKFAERVSS 695
+L+FA V+S
Sbjct: 357 KSLRFAASVNS 367
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
| >d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Length = 144 | Back information, alignment and structure |
|---|
| >d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108 | Back information, alignment and structure |
|---|
| >d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1097 | |||
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1ujoa_ | 144 | Transgelin {Mouse (Mus musculus) [TaxId: 10090]} | 99.87 | |
| d1h67a_ | 108 | Calponin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.87 | |
| d1p2xa_ | 159 | Ras GTPase-activating-like protein rng2 {Fission y | 99.75 | |
| d1aoaa1 | 131 | Fimbrin (Plastin), actin-crosslinking domain {Huma | 98.2 | |
| d1sh5a1 | 120 | Actin binding domain of plectin {Human (Homo sapie | 97.72 | |
| d1wjoa_ | 124 | Fimbrin (Plastin), actin-crosslinking domain {Huma | 97.64 | |
| d1aoaa2 | 116 | Fimbrin (Plastin), actin-crosslinking domain {Huma | 96.75 | |
| d1dxxa1 | 111 | Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | 96.64 | |
| d1pxya_ | 500 | Fimbrin (Plastin), actin-crosslinking domain {Thal | 96.19 | |
| d2qjza1 | 120 | Microtubule-associated protein eb1, N-terminal mic | 95.97 | |
| d1rt8a_ | 505 | Fimbrin (Plastin), actin-crosslinking domain {Fiss | 94.62 | |
| d1dxxa2 | 127 | Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | 94.08 | |
| d1pxya_ | 500 | Fimbrin (Plastin), actin-crosslinking domain {Thal | 93.46 | |
| d1bhda_ | 108 | Utrophin {Human (Homo sapiens) [TaxId: 9606]} | 93.32 | |
| d1sh5a2 | 110 | Actin binding domain of plectin {Human (Homo sapie | 93.32 | |
| d1rt8a_ | 505 | Fimbrin (Plastin), actin-crosslinking domain {Fiss | 93.18 | |
| d1bkra_ | 108 | beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} | 93.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.73 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 83.75 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.2 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 80.38 |
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=2.4e-81 Score=705.74 Aligned_cols=339 Identities=41% Similarity=0.622 Sum_probs=293.7
Q ss_pred HHHHHHHHHhhhhhhcCCCCEEEEEEeCCCCCCCCCCCCceEEecCCCcEEEeCCCC--CCCCCceeEeeceeeCCCCCh
Q 001334 349 QKVLEENRVLYNQVQDLKGTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFK--QGKDARKMFLFNKVFAPNVSQ 426 (1097)
Q Consensus 349 ~~~l~err~L~N~lqelKGnIRV~cRVRP~~~~E~~~~s~v~~~~~~~~i~I~~p~~--~gk~~~k~F~FD~VF~~~atQ 426 (1097)
.+.-.+||+|||+|.|+||||||||||||+++.|......+....++..+.+..+.. ......+.|.||+||+++++|
T Consensus 27 ~~~~~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q 106 (368)
T d2ncda_ 27 FQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 106 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEECSCHHHHTTTCCCEEECSEEECTTCCH
T ss_pred HHHHHHHHHHHhHHHHhcCCEEEEEEeCCCCchhcCCCCcEEEeCCCCeEEEccCCccccCCcCceeeECCeEECCCCCc
Confidence 333446899999999999999999999999988876666555555555565544321 123345789999999999999
Q ss_pred HHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhc-CCceEEEEEEEEEEE
Q 001334 427 EQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTR-GDMIKYEVGVQMIEI 505 (1097)
Q Consensus 427 eeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~-~~~~~y~V~VS~lEI 505 (1097)
++||+.+.|+|+++++|||+||||||||||||||||+|++ .++||+||++++||..+... ...+.|.|+|||+||
T Consensus 107 ~~Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~----~~~Giipr~~~~Lf~~~~~~~~~~~~~~v~vS~~EI 182 (368)
T d2ncda_ 107 SDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP----ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 182 (368)
T ss_dssp HHHHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEET----TEECHHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEE
T ss_pred cchHHHHHHHHHHHhcccceeEEeeccCCCccceEecccc----cccchhhHHHHHHhhhhhhhccccccceEEEEEEEE
Confidence 9999878999999999999999999999999999999954 57899999999999877543 456789999999999
Q ss_pred ecceeeeccCCCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEe
Q 001334 506 YNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLG 585 (1097)
Q Consensus 506 YNE~V~DLL~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~ 585 (1097)
|||+|||||.+........++++.. +++++.|++++.|.+++++..++..|.++|.++.|.+|..|||||+||+|+|..
T Consensus 183 yne~i~DLL~~~~~~~~~~~~~d~~-~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~~t~~n~~ssrSh~i~~i~v~~ 261 (368)
T d2ncda_ 183 YNEVLYDLLSNEQKDMEIRMAKNNK-NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIG 261 (368)
T ss_dssp SSSCEEETTCSSCCCCCEEECTTCT-TCEEETTCCCEEECSHHHHHHHHHHHHHHSCCCSSSCTTTTTTCEEEEEEEEEE
T ss_pred ecceeecccccccccccceeecccc-ccccccccceeccCCHHHHHHHHHHHHhhcccccccccccccccceEEEEEEEE
Confidence 9999999998876666666666654 689999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCc
Q 001334 586 RELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHA 665 (1097)
Q Consensus 586 ~~~~~g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnS 665 (1097)
.+...+....|+|+||||||+|+.. .+.+++|+.+||+||++|++||.+|++++.|||||+||||+||||+|||||
T Consensus 262 ~~~~~~~~~~s~l~~VDLAGse~~~----~~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~iPyR~SkLT~lL~dsLggns 337 (368)
T d2ncda_ 262 RHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNS 337 (368)
T ss_dssp ECTTSCCEEEEEEEEEECCCCCCC--------------CTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGSSSSC
T ss_pred EecCCCceEeeeeeeeeeccccccc----hhhhhcccccchhhHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHHhcCCCC
Confidence 8887888899999999999999865 367899999999999999999999999999999999999999999999999
Q ss_pred eeeEEEecCCCCCcHHHHHHHHHHHHHhccc
Q 001334 666 KTLMFVHINPEHNAIGETISTLKFAERVSSI 696 (1097)
Q Consensus 666 kTlMIa~ISP~~~~~~ETLsTLrFAsRak~I 696 (1097)
+|+||+||||...+++||++||+||+||+++
T Consensus 338 ~t~mI~~isp~~~~~~eTl~TL~fa~rak~~ 368 (368)
T d2ncda_ 338 KTLMFINVSPFQDCFQESVKSLRFAASVNSC 368 (368)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEEECCChhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999874
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|