Citrus Sinensis ID: 001337

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------110

MVMHCVFRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWKFRSIITYRLCKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGISSVSDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLTG

cccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHccccccHHHHccccHHHHHHHccccccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHccHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHcccccEEccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccccEEccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHcccEEEEEHHHHHHcccccccccHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHccccccEEEEEccHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHcccccccccccccccccEEEEcccccHHHHHHHHHHHcccccccEEEEEEEccccccccccccccEEEEEcccccccccHHHHHHHHccccccEEEEEcc

cccHHHHHcccHHHHccccHHHHcccccccccccccccccccHHHHHHHcccccccccccccccccEEEEEcccHHHHHHHcccccccccHHHHHHcccccccHHEEEEEEEHcccccHHHHHccccccccHHHHHHHHcHHHHcccHHHHHHcccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEccccccEcccccccccccccEcccccccccHHHHcccccccccccccHccccccEEEEcccccHccHccccccccccccccccccccccccccccccccccEEEccccHHHHHHcccccEEEEEEcccHHEEEccccccccccccccEEEEcccccEEEcccHHHHHcHHHccccccHHHHcHHccccccEccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHccccHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHccccEEEEcHHHEEccccccEEccHHHHHcHHHHHcccccEEEEccHHHHcccHHHHHHHHHHHHHccEEEEcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccHccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEEccccccEEEccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEc

mvmhcvfrrhgklleegaSGFLQKKIandgsenggkevsdinwnsvnkifsgdVSEKCAAFGSKHWASVYLASTPQQAaamglkfpgvdevtdfssncpnmwkfRSIITYRLCkvsgsveeiedvdgnsddpfVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHrkiskqkeigsvdwtiedsavetrplvdaskslsnkktddgdmpgnnnEVALQNLETGVLESSVKErslsngissvsdsalpdsselrgikrsneseepnsekkrsrtiiigsdeadvvkdecstkledhsvspenindaatdnslhsqsLSEKFYCTACnnvaievhphpilnviVCKDCKCllekkmhvkdadcsecycvwcgrssdlvsckscktlfCTTCVKRniseaclsdevqascwqccccspsllKRLTSELGRamgsenlivsssesdsensdadnnlkiggkrkQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFssksklmnsvtldgdlsagaSIEVLGDAITGYIVNVVREkgeeavripssISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMkwrpselkplrVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAfrnlsfgkhvkdrNMAREICHAlqdgpdilvcdeahmikNTRADTTQALKQVKCQRrialtgsplqnnlMEYYCMVDfvregflgssHEFRNrfqnpiengqhtnstsedVKIMNQRSHILYEQLKGFVQRmdmnvvkkdlppktVFVITVKLSPLQRRLYKRFLDLhgftndrvsNEKIRKSFFAGYQALAQIwnhpgilqltkdkgypsredaedsssdenmdynvvigekprnmndflqgknddgffqKDWWNDLLhehtykeldysgKMVLLLDILTMCsnmgdkslvfsqsiptlDLIEFYlsklprpgkqgklwkkgkdwyrldgrtesSERQKLVERFNEPLNKRVKCTLIStragslginlhsanrviivdgswnptydLQAIYRAWRCmdkqsqflltg

mvmhcvfrrhgklleegasGFLQKKIANdgsenggkevsdinWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWKFRSIITYRLCKVSGSVEeiedvdgnsdDPFVADAIANEKelalseeqrkkfrkvkeeddanmdrklqlhlkrrrhrkiskqkeigsvdwtiedsavetrplvdaskslsnkktddgdmpgnNNEVALQNLETGVLESSVKERslsngissvsdsalpdsselrgikrsneseepnsekkrsrtiiigsdeadvvKDECSTKledhsvspeninDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMhvkdadcsecYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIvsssesdsensdadnnlkiggkrkqkkkirrilddaelgeetkrkiAIEKERQERLKSlqvqfssksklMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGeeavripssisaklkaHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFmkwrpselkplrVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRrialtgsplqnnlMEYYCMVDFVREGFLGSSHEFRNRFQNpiengqhtnstseDVKIMNQRSHILYEQLKGFVQRMDMNVVkkdlppktvfvitvklsplqRRLYKRFLDLhgftndrvsnEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRedaedsssdenmDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLsklprpgkqgklwkkgkdwyrldgrtesserqklverfneplnkrvkCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLTG

MVMHCVFRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWKFRSIITYRLCKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDrklqlhlkrrrhrkISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGIssvsdsalpdssELRGIkrsneseepnsekkrsrTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGsenlivsssesdsensdadnnLkiggkrkqkkkirriLDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRedaedsssdeNMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLTG

***HCVFRRHGKLLE***********************SDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWKFRSIITYRLCKVSGSVEEI*********************************************************************W******************************************************************************************************************************************EKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLT**************************************************************************************TLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF***********************MNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLT***********************VVIG******NDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD*************RFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQ*******

***HCVFRRHGKLLEEGASGFLQKKI************SDINWNSVNK*********************YL*STP**AAAMGLKFPGVD*V****************************************************************************************************************************************************************************************************************************************************TACNNVAIEVHPHPILNVIVCKD************************GRSSDLVSCKSCKTLF********************************************************************************************************************************************************KGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPI******************RSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL*****************FAGYQALAQIWNHPGILQLTKDKG**********************GEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLTG

MVMHCVFRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWKFRSIITYRLCKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVL**************************LRGIKR**************RTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLI*************DNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK**************ENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLTG

****C******************K*I***************NWNS*NK*F***VSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWKFRSIITYRLCKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKIS******************TRPLVDAS***************NNNEVALQNLETGVLESS*****************************************RSR******DEA*************************TDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMG*************************GKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLM****LDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENG*HTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLTG

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1097	2.2.26 [Sep-21-2011]
Q9Y4B4		1467	Helicase ARIP4 OS=Homo sa	yes	no	0.500	0.374	0.377	1e-109
A4IHD2		1396	Helicase ARIP4 OS=Xenopus	yes	no	0.508	0.399	0.364	1e-109
Q99NG0		1466	Helicase ARIP4 OS=Mus mus	yes	no	0.490	0.366	0.379	1e-108
Q9GQN5		1311	Transcriptional regulator	yes	no	0.539	0.451	0.343	1e-101
Q7YQM4		2492	Transcriptional regulator	no	no	0.325	0.143	0.442	5e-86
P46100		2492	Transcriptional regulator	no	no	0.325	0.143	0.442	6e-86
Q7YQM3		2492	Transcriptional regulator	N/A	no	0.325	0.143	0.442	6e-86
Q61687		2476	Transcriptional regulator	no	no	0.326	0.144	0.444	9e-86
Q9DG67		918	DNA repair and recombinat	no	no	0.427	0.510	0.313	2e-56
B4MX21		784	DNA repair and recombinat	N/A	no	0.399	0.558	0.304	2e-56

>sp\|Q9Y4B4\|ARIP4_HUMAN Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=4	Back alignment and function desciption

 Score =  397 bits (1021), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/627 (37%), Positives = 346/627 (55%), Gaps = 78/627 (12%)

Query: 538  DAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGC 597
            DA+   +VN+     EE V +   ++  +K HQ+ GIRF+++N+++S+ + K+   G GC
Sbjct: 243  DALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKT-SSGFGC 301

Query: 598  ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW--------- 648
            ILAH+MGLGKT QVI+F+    R  +   +T L + PVN L NW  EF  W         
Sbjct: 302  ILAHSMGLGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPA 359

Query: 649  --RPSELKP--LRVFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV--- 699
              +P E++P   +V +L D  +    RA+++A W ++GGV L+GY  +R L+  K     
Sbjct: 360  DNKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATG 419

Query: 700  --------------------KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQAL 738
                                + +   RE   AL + GPD+++CDE H IKN +A T+QAL
Sbjct: 420  RPKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQAL 479

Query: 739  KQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 798
            K ++ +RR+ LTG PLQNNL+EY+CMVDFVR  FLG+  EF N F+ PI NGQ  +ST +
Sbjct: 480  KNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQ 539

Query: 799  DVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHG 858
            DV++M  RSH+L+  L+GFVQR    V+K  LP K   VI V+LS +QR LY +F+D   
Sbjct: 540  DVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRF- 598

Query: 859  FTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRE---DAEDSSS------ 909
               D  S+  +  +    +    +IWNHP +L     K   + E   D E+  S      
Sbjct: 599  --RDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSAR 656

Query: 910  ---------DENMDYNVVIGEKPRNMNDFLQGKNDDGFFQK-------DWWNDLLHEHTY 953
                      E+      +GE     + FLQG   + F ++       +W  DLL  +  
Sbjct: 657  CPPQGTKGKGEDSTLASSMGEA--TNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNYQT 714

Query: 954  KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSK--LPRP----GKQGK 1007
              L+ S KMVLL  ++     +GDK LVFSQS+ TL LIE +L K  +P P    G+  +
Sbjct: 715  GVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQ 774

Query: 1008 LWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIV 1067
             W +   ++RLDG T + ER++L+ +FN+P N      L+STRAG LG+NL  ANRV++ 
Sbjct: 775  KWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVF 834

Query: 1068 DGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
            D SWNP +D QA+ R +R   K+  ++
Sbjct: 835  DASWNPCHDAQAVCRVYRYGQKKPCYI 861

DNA helicase that modulates androgen receptor (AR)-dependent transactivation in a promoter-dependent manner. Not able to remodel mononucleosomes in vitro.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp\|A4IHD2\|ARIP4_XENTR Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE=2 SV=1	Back alignment and function description

>sp\|Q99NG0\|ARIP4_MOUSE Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=1	Back alignment and function description

>sp\|Q9GQN5\|ATRX_DROME Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2	Back alignment and function description

>sp\|Q7YQM4\|ATRX_PANTR Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1	Back alignment and function description

>sp\|P46100\|ATRX_HUMAN Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=5	Back alignment and function description

>sp\|Q7YQM3\|ATRX_PONPY Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1	Back alignment and function description

>sp\|Q61687\|ATRX_MOUSE Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=3	Back alignment and function description

>sp\|Q9DG67\|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1	Back alignment and function description

>sp\|B4MX21\|RAD54_DROWI DNA repair and recombination protein RAD54-like OS=Drosophila willistoni GN=okr PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1097
302143565		1477	unnamed protein product [Vitis vinifera]	0.958	0.711	0.726	0.0
359488066		1507	PREDICTED: uncharacterized protein LOC10	0.958	0.697	0.725	0.0
356574892		1485	PREDICTED: transcriptional regulator ATR	0.947	0.699	0.676	0.0
224125738		1404	chromatin remodeling complex subunit [Po	0.905	0.707	0.683	0.0
255561985		1447	conserved hypothetical protein [Ricinus	0.747	0.566	0.796	0.0
449470320		1628	PREDICTED: uncharacterized protein LOC10	0.762	0.513	0.755	0.0
334182391		1479	DEAD-like helicase domain-containing pro	0.889	0.659	0.584	0.0
9802554		1471	F22O13.8 [Arabidopsis thaliana]	0.886	0.660	0.580	0.0
297843648		1483	ATRX/CHR20 [Arabidopsis lyrata subsp. ly	0.708	0.523	0.709	0.0
115482344		1319	Os10g0457700 [Oryza sativa Japonica Grou	0.882	0.733	0.552	0.0

>gi\|302143565\|emb\|CBI22318.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1510 bits (3910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 802/1104 (72%), Positives = 905/1104 (81%), Gaps = 53/1104 (4%)

Query: 6    VFRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKH 65
            V RRHGKLLEEGASG+L  K+A+DG+     E ++++W S NK FS   SE    FGS+H
Sbjct: 158  VRRRHGKLLEEGASGYLANKLASDGNREAVTENAEVDWCSFNKCFSDHASEDSTLFGSEH 217

Query: 66   WASVYLASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWKFRSIITYRLCKVSGSVEEIEDV 125
            WASVYLASTPQQAA MGLKFPGVDE                            VEEI+D+
Sbjct: 218  WASVYLASTPQQAAVMGLKFPGVDE----------------------------VEEIDDI 249

Query: 126  DGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKISKQK 185
            DGNS DPFVADAIANE+ + LSEEQ+KKF+KVKEEDDAN+DRKLQLHLKRRR+RK S Q+
Sbjct: 250  DGNSSDPFVADAIANERAVDLSEEQKKKFKKVKEEDDANIDRKLQLHLKRRRYRKRSTQE 309

Query: 186  EIGSVDWTIEDSAVETRPLVDASKSLSNKKT--DDGDMPGNNNEVALQNLETGVLESSV- 242
             I   D   E+    +  L D S+++  +KT  D   +  NN++ A Q+ +T V ES   
Sbjct: 310  TIQKEDRLAENILDNSVLLNDYSQAVLREKTRGDGVSISNNNDDGACQSSKTEVSESLEM 369

Query: 243  -----KERSLSNGISSV-SDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADV 296
                 KER  SNG SSV S S LPDS+E +G KRS+++ E + + KR RT+II SD+   
Sbjct: 370  PDTLDKERPASNGNSSVLSGSVLPDSTETKGFKRSHDNGELDVDNKRFRTVIIDSDDETH 429

Query: 297  VKDECS-------TKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHP 349
                 S       TK+E  SV  E   D     SL S+ ++  F+CTACN VAIEVH HP
Sbjct: 430  EVGNVSNSLVNNMTKMEGQSVLQETEGDFVGSGSLPSKHMNGNFHCTACNKVAIEVHCHP 489

Query: 350  ILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISE 409
            +L VI+C DCKCL+E+KMHVKD DCSECYC WCGRS+DLV CKSCKTLFC TC+KRNI E
Sbjct: 490  LLKVIICGDCKCLIERKMHVKDPDCSECYCGWCGRSNDLVGCKSCKTLFCITCIKRNIGE 549

Query: 410  ACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGG 469
             CLSD V+AS WQCCCCSPSLL++LTSEL +A+GS +L VSSS+SDS++SD D N+ I  
Sbjct: 550  ECLSD-VKASGWQCCCCSPSLLQQLTSELEKAIGSSSLTVSSSDSDSDDSDEDINVAISS 608

Query: 470  KRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSA 529
            KR++KKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFS KSK+MN+ + +G+LS 
Sbjct: 609  KRRRKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSEKSKMMNAASCNGNLSE 668

Query: 530  GASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVK 589
              S+EVLGDA  GYIVNVVREKGEEAVRIP SISAKLK HQ+ GIRFMWENIIQSIRKVK
Sbjct: 669  DTSVEVLGDASKGYIVNVVREKGEEAVRIPPSISAKLKVHQITGIRFMWENIIQSIRKVK 728

Query: 590  SGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWR 649
            SGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS++LGLRTALIVTPVNVLHNW+QEF+KWR
Sbjct: 729  SGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSIDLGLRTALIVTPVNVLHNWRQEFIKWR 788

Query: 650  PSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREIC 709
            P ELKPLRVFMLEDVSR+RRAELLAKWRAKGGVFLIGY+AFRNLS GK+VKDR+MAREIC
Sbjct: 789  PLELKPLRVFMLEDVSRERRAELLAKWRAKGGVFLIGYSAFRNLSLGKNVKDRHMAREIC 848

Query: 710  HALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
            +ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR
Sbjct: 849  YALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 908

Query: 770  EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
            EGFLGSSHEFRNRFQNPIENGQH NSTS+DVKIMNQRSHILYEQLKGFVQRMDM+VVK D
Sbjct: 909  EGFLGSSHEFRNRFQNPIENGQHMNSTSDDVKIMNQRSHILYEQLKGFVQRMDMSVVKND 968

Query: 830  LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKS-FFAGYQALAQIWNHPG 888
            LPPKTVFV+ VKLS LQR+LYKRFLD+HGFTND+VS++KIRK  FFAGYQALAQIWNHPG
Sbjct: 969  LPPKTVFVMAVKLSSLQRKLYKRFLDVHGFTNDKVSSDKIRKRCFFAGYQALAQIWNHPG 1028

Query: 889  ILQLTK-DKGYPSRED------AEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQK 941
            ILQLTK +K Y  RED      A+DSSSD+N+DYN V+GEK RN N+  QGK D G +QK
Sbjct: 1029 ILQLTKEEKDYARREDGVENFLADDSSSDDNIDYNTVLGEKVRNKNEIQQGKVDSGLYQK 1088

Query: 942  DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1001
             WWNDLLHE+ YKE+DYSGKMVLLLDILTMC+++GDK+LVFSQS+ TLDLIE+YLSKL R
Sbjct: 1089 GWWNDLLHENNYKEVDYSGKMVLLLDILTMCADVGDKALVFSQSLSTLDLIEYYLSKLSR 1148

Query: 1002 PGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSA 1061
             GK+GK WK+GKDWYRLDGRTE SERQKLVERFN+PLNKRVKCTLISTRAGSLGINLHSA
Sbjct: 1149 QGKKGKCWKQGKDWYRLDGRTEGSERQKLVERFNDPLNKRVKCTLISTRAGSLGINLHSA 1208

Query: 1062 NRVIIVDGSWNPTYDLQAIYRAWR 1085
            NRVIIVDGSWNPTYDLQAIYRAWR
Sbjct: 1209 NRVIIVDGSWNPTYDLQAIYRAWR 1232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359488066\|ref\|XP_002263799.2\| PREDICTED: uncharacterized protein LOC100244360 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356574892\|ref\|XP_003555577.1\| PREDICTED: transcriptional regulator ATRX-like [Glycine max]	Back alignment and taxonomy information

>gi\|224125738\|ref\|XP_002319663.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222858039\|gb\|EEE95586.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255561985\|ref\|XP_002522001.1\| conserved hypothetical protein [Ricinus communis] gi\|223538805\|gb\|EEF40405.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|449470320\|ref\|XP_004152865.1\| PREDICTED: uncharacterized protein LOC101218346 [Cucumis sativus]	Back alignment and taxonomy information

>gi|334182391|ref|NP_001184937.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|334182393|ref|NP_001184938.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|334182395|ref|NP_001184939.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190193|gb|AEE28314.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190194|gb|AEE28315.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190195|gb|AEE28316.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|9802554\|gb\|AAF99756.1\|AC003981_6 F22O13.8 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297843648\|ref\|XP_002889705.1\| ATRX/CHR20 [Arabidopsis lyrata subsp. lyrata] gi\|297335547\|gb\|EFH65964.1\| ATRX/CHR20 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|115482344\|ref\|NP_001064765.1\| Os10g0457700 [Oryza sativa Japonica Group] gi\|113639374\|dbj\|BAF26679.1\| Os10g0457700, partial [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1097
UNIPROTKB\|K7GSF7		2372	LOC100514440 "Uncharacterized	0.371	0.172	0.413	3.9e-133
UNIPROTKB\|F1MQ85		2473	ATRX "Uncharacterized protein"	0.371	0.164	0.413	3.9e-132
UNIPROTKB\|F1PKC1		2489	ATRX "Uncharacterized protein"	0.371	0.163	0.413	1.1e-131
UNIPROTKB\|F1LM36		2467	F1LM36 "Uncharacterized protei	0.371	0.165	0.413	2.1e-131
MGI\|MGI:103067		2476	Atrx "alpha thalassemia/mental	0.371	0.164	0.413	9.3e-131
UNIPROTKB\|P46100		2492	ATRX "Transcriptional regulato	0.371	0.163	0.411	2.6e-130
UNIPROTKB\|E1C8H5		2434	ATRX "Uncharacterized protein"	0.371	0.167	0.415	7.4e-129
ZFIN\|ZDB-GENE-030912-11		2011	atrx "alpha thalassemia/mental	0.371	0.202	0.400	1.1e-126
UNIPROTKB\|F1RPI9		988	LOC100514440 "Uncharacterized	0.371	0.412	0.412	2.5e-120
UNIPROTKB\|E1C963		1148	RAD54L2 "Uncharacterized prote	0.171	0.163	0.461	4.8e-95

UNIPROTKB\|K7GSF7 LOC100514440 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

 Score = 820 (293.7 bits), Expect = 3.9e-133, Sum P(5) = 3.9e-133
 Identities = 177/428 (41%), Positives = 257/428 (60%)

Query:   481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
             L D +L  ET+  +   KE +ER K +  +   + KL   + ++        I       
Sbjct:  1439 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1489

Query:   541 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 600
             T  +++   E  E  V++  ++  KLK HQV G++FMW+   +S++K K    G GCILA
Sbjct:  1490 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1548

Query:   601 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 658
             H MGLGKT QV++FL+T +    L   TAL+V P+N   NW  EF KW+    + + L V
Sbjct:  1549 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEV 1608

Query:   659 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 716
               L  V R + R+ +L +W+  GGV +IGY  +RNL+ G++VK R +      AL D GP
Sbjct:  1609 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1668

Query:   717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
             D +VCDE H++KN  +  ++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E  LGS 
Sbjct:  1669 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1728

Query:   777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
              EFRNRF NPI+NGQ  +ST  DV++M +R+HILYE L G VQR D   + K LPPK  +
Sbjct:  1729 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1788

Query:   837 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 893
             V+ V+++P+Q +LY+ +LD L G  N       K     F  +Q L++IW HP  LQL  
Sbjct:  1789 VLAVRMTPIQCKLYQYYLDHLTGVGNSSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1848

Query:   894 ---KDKGY 898
                ++KGY
Sbjct:  1849 ISKENKGY 1856

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB\|F1MQ85 ATRX "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PKC1 ATRX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LM36 F1LM36 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:103067 Atrx "alpha thalassemia/mental retardation syndrome X-linked homolog (human)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|P46100 ATRX "Transcriptional regulator ATRX" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C8H5 ATRX "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030912-11 atrx "alpha thalassemia/mental retardation syndrome X-linked homolog (human)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RPI9 LOC100514440 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C963 RAD54L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1097
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	1e-67
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	1e-59
cd11726		127	cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-tha	5e-45
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	2e-24
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	5e-19
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	3e-16
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	8e-16
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	9e-16
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	2e-15
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	1e-13
cd11672		120	cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD	3e-12
cd11725		126	cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine-	4e-07
cd11729		137	cd11729, ADDz_Dnmt3a, ADDz domain of DNA (cytosine	4e-05

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

 Score =  229 bits (585), Expect = 1e-67
 Identities = 100/331 (30%), Positives = 158/331 (47%), Gaps = 39/331 (11%)

Query: 569 HQVVGIRFMW--ENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGL 626
           +Q+ G+ ++   E+             GLG ILA  MGLGKT Q IA L T ++      
Sbjct: 1   YQLEGVNWLISLES------------NGLGGILADEMGLGKTLQTIALLATYLKEGKDRR 48

Query: 627 RTALIVTPVNVLHNWKQEFMKWRPSELKPLRV--FMLEDVSRDRRAELLAKWRAKGGVFL 684
              L+V P++ LHNW  EF KW P     LRV  +  +   R +  + +AK      V +
Sbjct: 49  GPTLVVCPLSTLHNWLNEFEKWAP----ALRVVVYHGDGRERSKLRQSMAKRLDTYDVVI 104

Query: 685 IGY-TAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKC 743
             Y    ++      +      R            +V DEAH +KN+++   +ALK++K 
Sbjct: 105 TTYEVLRKDKKLLSLLNKVEWDR------------VVLDEAHRLKNSKSKLYKALKKLKT 152

Query: 744 QRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIM 803
           + R+ LTG+P+QNNL E + +++F+R G  GS   F   F  PI N    ++ +++++  
Sbjct: 153 RNRLLLTGTPIQNNLEELWALLNFLRPGPFGSFKVFEEWFNIPIANTA--DNKNKNLEKG 210

Query: 804 NQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHG-FTND 862
            +  + L++ LK F+ R   + V+K LPPKT  V+   LS  QR+LYK+ L       + 
Sbjct: 211 KEGINRLHKLLKPFLLRRTKDDVEKSLPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSF 270

Query: 863 RVSNEKIR---KSFFAGYQALAQIWNHPGIL 890
            V   +      S       L +I NHP + 
Sbjct: 271 AVEGGEKNVGIASLLNLIMQLRKICNHPYLF 301

This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|213034 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-thalassemia/mental retardation, X-linked)	Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|213032 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD-like zinc finger domain	Back alignment and domain information

>gnl\|CDD\|213033 cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine-5) methyltransferases (C5-MTases) 3 (Dnmt3)	Back alignment and domain information

>gnl\|CDD\|213037 cd11729, ADDz_Dnmt3a, ADDz domain of DNA (cytosine-5) methyltransferases (C5-MTases) 3 a (Dnmt3a)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1097
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
KOG0383		696	consensus Predicted helicase [General function pre	100.0
KOG1001		674	consensus Helicase-like transcription factor HLTF/	100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	100.0
KOG0298		1394	consensus DEAD box-containing helicase-like transc	99.96
PRK13766		773	Hef nuclease; Provisional	99.95
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.92
PHA02558		501	uvsW UvsW helicase; Provisional	99.92
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.89
KOG1123		776	consensus RNA polymerase II transcription initiati	99.88
KOG0354		746	consensus DEAD-box like helicase [General function	99.85
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.83
PTZ00110		545	helicase; Provisional	99.83
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.82
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.81
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.81
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.81
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.8
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.79
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.79
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.79
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.79
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.79
PTZ00424		401	helicase 45; Provisional	99.78
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.77
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.76
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.75
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.75
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.75
PRK10689		1147	transcription-repair coupling factor; Provisional	99.73
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.72
PRK13767		876	ATP-dependent helicase; Provisional	99.71
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	99.69
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.65
PRK01172		674	ski2-like helicase; Provisional	99.63
PRK02362		737	ski2-like helicase; Provisional	99.63
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	99.61
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.61
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.59
COG4096		875	HsdR Type I site-specific restriction-modification	99.58
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.58
PRK00254		720	ski2-like helicase; Provisional	99.57
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.55
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.52
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.52
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.52
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.5
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	99.48
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.48
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.47
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.46
COG4889		1518	Predicted helicase [General function prediction on	99.44
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	99.44
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.43
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.43
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.43
PRK09401		1176	reverse gyrase; Reviewed	99.41
PRK05580		679	primosome assembly protein PriA; Validated	99.4
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	99.39
COG1205		851	Distinct helicase family with a unique C-terminal	99.39
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	99.39
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	99.38
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.38
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.38
KOG0343		758	consensus RNA Helicase [RNA processing and modific	99.37
COG1204		766	Superfamily II helicase [General function predicti	99.37
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.36
PHA02653		675	RNA helicase NPH-II; Provisional	99.35
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.34
KOG4284		980	consensus DEAD box protein [Transcription]	99.33
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.33
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.33
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.28
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	99.25
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.25
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.24
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	99.22
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.21
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	99.21
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.2
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.19
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.18
PRK09694		878	helicase Cas3; Provisional	99.17
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.17
PRK14701		1638	reverse gyrase; Provisional	99.14
KOG0347		731	consensus RNA helicase [RNA processing and modific	99.13
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	99.11
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.08
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.08
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	99.07
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.02
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.0
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	98.97
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	98.96
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	98.95
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	98.93
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	98.9
COG1202		830	Superfamily II helicase, archaea-specific [General	98.83
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.83
KOG0346		569	consensus RNA helicase [RNA processing and modific	98.82
KOG0334		997	consensus RNA helicase [RNA processing and modific	98.82
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	98.79
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	98.73
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	98.7
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	98.69
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	98.66
PRK12326		764	preprotein translocase subunit SecA; Reviewed	98.62
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	98.62
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	98.55
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	98.54
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	98.54
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	98.54
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	98.43
KOG0353		695	consensus ATP-dependent DNA helicase [General func	98.42
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	98.36
COG0610		962	Type I site-specific restriction-modification syst	98.33
PRK05298		652	excinuclease ABC subunit B; Provisional	98.28
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.27
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	98.25
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	98.05
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	98.04
PRK15483		986	type III restriction-modification system StyLTI en	97.99
KOG0327		397	consensus Translation initiation factor 4F, helica	97.99
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	97.97
KOG4299		613	consensus PHD Zn-finger protein [General function	97.97
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	97.95
CHL00122		870	secA preprotein translocase subunit SecA; Validate	97.95
COG1198		730	PriA Primosomal protein N' (replication factor Y)	97.91
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	97.9
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	97.87
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	97.82
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	97.66
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	97.63
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	97.61
PF00628		51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	97.6
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	97.54
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	97.51
KOG1244		336	consensus Predicted transcription factor Requiem/N	97.4
PF13871		278	Helicase_C_4: Helicase_C-like	97.33
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	97.3
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	97.18
smart00249		47	PHD PHD zinc finger. The plant homeodomain (PHD) f	97.09
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	97.01
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.89
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	96.88
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	96.88
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	96.86
KOG1473		1414	consensus Nucleosome remodeling factor, subunit NU	96.76
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	96.76
PRK10536		262	hypothetical protein; Provisional	96.72
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	96.7
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	96.68
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	96.68
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	96.68
COG3587		985	Restriction endonuclease [Defense mechanisms]	96.45
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	96.45
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	96.24
KOG1803		649	consensus DNA helicase [Replication, recombination	96.15
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	95.96
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.91
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	95.9
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	95.68
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	95.59
KOG4323		464	consensus Polycomb-like PHD Zn-finger protein [Gen	95.58
PRK14873		665	primosome assembly protein PriA; Provisional	95.39
KOG1512		381	consensus PHD Zn-finger protein [General function	95.38
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	95.17
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	94.82
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	94.68
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	94.66
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	94.45
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	94.31
KOG1973		274	consensus Chromatin remodeling protein, contains P	94.04
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	94.01
KOG1131		755	consensus RNA polymerase II transcription initiati	93.98
PRK04296		190	thymidine kinase; Provisional	93.75
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	93.61
KOG1473		1414	consensus Nucleosome remodeling factor, subunit NU	93.52
KOG0825		1134	consensus PHD Zn-finger protein [General function	93.43
TIGR00376		637	DNA helicase, putative. The gene product may repre	92.81
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	92.46
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	91.91
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	91.23
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	90.76
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	90.75
PRK10875		615	recD exonuclease V subunit alpha; Provisional	90.61
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	90.39
KOG1805		1100	consensus DNA replication helicase [Replication, r	90.25
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	90.13
COG5432		391	RAD18 RING-finger-containing E3 ubiquitin ligase [	90.02
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	89.99
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	89.95
smart00382		148	AAA ATPases associated with a variety of cellular	89.9
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	89.54
KOG4299		613	consensus PHD Zn-finger protein [General function	89.48
KOG0957		707	consensus PHD finger protein [General function pre	89.45
KOG4443		694	consensus Putative transcription factor HALR/MLL3,	89.2
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	88.75
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	88.42
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	88.0
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	87.52
CHL00181		287	cbbX CbbX; Provisional	87.24
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	87.23
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	86.78
PF10497		105	zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida	86.16
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	86.13
KOG1245		1404	consensus Chromatin remodeling complex WSTF-ISWI,	85.71
PRK08116		268	hypothetical protein; Validated	85.69
PRK06526		254	transposase; Provisional	85.44
KOG0954		893	consensus PHD finger protein [General function pre	85.34
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	85.31
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	84.55
cd04718		148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	83.82
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	83.61
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	83.52
PF13245		76	AAA_19: Part of AAA domain	83.44
PF06733		174	DEAD_2: DEAD_2; InterPro: IPR010614 This represent	83.02
PRK09112		351	DNA polymerase III subunit delta'; Validated	83.0
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	81.99
PF06745		226	KaiC: KaiC; InterPro: IPR014774 This entry represe	80.59
PF00265		176	TK: Thymidine kinase; InterPro: IPR001267 Thymidin	80.43

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.7e-150  Score=1302.59  Aligned_cols=978  Identities=34%  Similarity=0.477  Sum_probs=803.6

Q ss_pred             eeeeecccccchhccchhhhhhhhccCCCCCCCccccccccccccccccCCchhhhhhcccccceeeeeccCHHHHHHcc
Q 001337            3 MHCVFRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMG   82 (1097)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (1097)
                      ++|+++||||+++||+++|++|++........-...++.+|.+.|+-|.+.+ ++...|+++.|+++||||||.++++||
T Consensus       216 ed~~~~r~~kn~~egrekk~~K~l~k~~~k~~~~~ssd~dk~sakk~~~~ss-dE~v~~~e~~pr~~llsS~ktkerasg  294 (1567)
T KOG1015|consen  216 EDSSEDRKSKNGAEGREKKRCKLLGKSSRKRQDCSSSDTDKYSAKKDGCNSS-DERVKRIELRPRRNLLSSRKTKERASG  294 (1567)
T ss_pred             cCcchhhhhhhhhhhhhhHHHHHhccchhhhcccCCCchhhhhhhhcccccc-cccchhhhhhhHhhhccCcchhhhhcc
Confidence            5789999999999999999999998765433334678899999999999988 678999999999999999999999999


Q ss_pred             CCCCCCccccccCCCCCCcccccceeeeeeccccCccceeecccCCCCCchhHHhhcchhhhcccHHHHhhccccccccc
Q 001337           83 LKFPGVDEVTDFSSNCPNMWKFRSIITYRLCKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDD  162 (1097)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (1097)
                      +.||||.|                            ++|++|++...++||.+++|.+|+|..+.++|...|..++||||
T Consensus       295 ~s~sd~~e----------------------------s~E~ed~kksk~s~~~k~vi~keKern~k~a~~ts~s~~eeeDd  346 (1567)
T KOG1015|consen  295 SSSSDAEE----------------------------SSEDEDKKKSKTSSKKKAVIVKEKERNRKQADITSSSSSEEEDD  346 (1567)
T ss_pred             CCcCCccc----------------------------cchhhhhhhhccchhhhhhhhHHHHhhhhhhhcccccccchhhh
Confidence            99999999                            99999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhcccccccccccccccccccceecchhhhhhhcccCCCCCCCCCCCCCchhhccccccccccccc
Q 001337          163 ANMDRKLQLHLKRRRHRKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSV  242 (1097)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (1097)
                      ...++-+|+.||++++.|+.||...++. ..+.+.++...                       ..-+.+|.++...++. 
T Consensus       347 e~es~~~~~~lkkk~kqk~~kq~sskss-ees~dd~~~r~-----------------------~kk~t~n~aKa~~ss~-  401 (1567)
T KOG1015|consen  347 EQESIGEGSSLKKKIKQKSGKQASSKSS-EESVDDPENRI-----------------------AKKMTLNEAKANLSSD-  401 (1567)
T ss_pred             hhhhhhhcccchHhhhhccchhhhhhcc-hhccccHHHHh-----------------------hhhcchHHHHhhhcCC-
Confidence            9999999999999999999999999888 55555554442                       1114444554444333 


Q ss_pred             ccccccCCCccccCCCCCCccccccccCCCCCCCCCccccceeEEEecCCCCccccccccccccccccCcccccccccCC
Q 001337          243 KERSLSNGISSVSDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDN  322 (1097)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (1097)
                      . .+.++.+|           | .++|+.....+-........+-+. +++                            .
T Consensus       402 e-Ts~~s~es-----------E-~~sk~sgk~~es~~~~e~~s~~~n-~~s----------------------------~  439 (1567)
T KOG1015|consen  402 E-TSSSSDES-----------E-EGSKRSGKQNESNPGDEEASNQVN-SES----------------------------D  439 (1567)
T ss_pred             C-cccccccc-----------c-cchhhhcccccCCCCccccccccc-ccc----------------------------c
Confidence            1 11111111           1 233322221111111111111110 000                            0


Q ss_pred             cccccccCcceeeccccceEEEeeccceeEEEEecCcccchhhcccccCCCCCcceeeeccCCCCeeeccccccchhhhh
Q 001337          323 SLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTC  402 (1097)
Q Consensus       323 ~~~~~~~~~~~~C~~Cg~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~C  402 (1097)
                      +.+.+.--..|.||.|.+.....+.||..+++.|+.|..... ..-...++..+..|.||+..-.+.-|..|++.||..|
T Consensus       440 ~dsk~~~k~~~r~~~~~K~~vsd~e~peekkt~~k~ksR~~~-~~sSese~d~d~eee~~s~~~~~~e~~~~~k~~sa~e  518 (1567)
T KOG1015|consen  440 SDSKESKKPRYRRLLRHKLTVSDGESPEEKKTKPKEKSRNRR-KVSSESEEDSDFEEEGVSEEVSESEDEQRPKTRSAKE  518 (1567)
T ss_pred             cccccccCcchhhhhhcchhhcccccchhhhcchhhhccchh-hhcccccccchhhcccccCccccchhhhcccccchHH
Confidence            112233344578999999988899999999999999876554 3444556667779999999999999999999999999


Q ss_pred             hhccchhhhhhhhhhcccceeeecChhhHHHHHHHHhhhcCCccceecCCCCCcCCCccccceeecccchhhhhHHhhcc
Q 001337          403 VKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILD  482 (1097)
Q Consensus       403 l~~~~~~~~~~~~~~~~~W~C~~C~~~~~~~l~~~~~~~~~~~~~~~~~s~~d~~~sd~~~~~~~~~~~~~~k~ir~il~  482 (1097)
                      +.++.+...++ ......|.|.+|++.+.+  .++.++.+.+...+..+++..++.+.+..|+..++|+|++|+||+||+
T Consensus       519 ~~~esd~Evmp-qkkkr~~~~~~sds~~e~--kse~E~ee~ekK~~ek~~kk~esseSd~vn~~sksK~K~rKkiRkII~  595 (1567)
T KOG1015|consen  519 AELESDQEVMP-QKKKRRRIKVQSDSSSEN--KSESEEEEEEKKEEEKEEKKEESSESDNVNDDSKSKGKGRKKIRKIIK  595 (1567)
T ss_pred             Hhhccchhhhh-hhhhcCceeeecCCcccc--cccccHHHHHHHHHhhhhhcccccccCCcCccccccccchhHHHhhcc
Confidence            99999999988 555567999999999988  677788888777766666665554444477778899999999999999


Q ss_pred             ccccchhhhhhhhhhHHHHHhhhcc---eEEeccccccccccccCCCCCCCcceEEecccccceEEeeeecccccceecC
Q 001337          483 DAELGEETKRKIAIEKERQERLKSL---QVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIP  559 (1097)
Q Consensus       483 d~~l~e~~~~~~~~eker~~rl~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~i~~~~~~~~~~~v~vP  559 (1097)
                      |++|+.+|+.++++|++|++||+..   ++.+...     .+.....++++.        ...+++++..+..++++.||
T Consensus       596 d~kL~keT~~a~k~EkeRrkRie~~~~rqK~~n~i-----~ied~s~~~e~i--------t~~lVld~deet~e~~VqV~  662 (1567)
T KOG1015|consen  596 DDKLRKETQNALKEEKERRKRIEEERERQKLRNVI-----EIEDASPTKEPI--------TTKLVLDEDEETKEPLVQVH  662 (1567)
T ss_pred             hhhhchhHHHHHHHHHHHHHHHHHHHHHhhhhcee-----eeccCCCCcccc--------ceeEEecchhhhccchhhcc
Confidence            9999999999999999999999884   2222211     111112222221        23788999999999999999


Q ss_pred             ccccccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhh
Q 001337          560 SSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH  639 (1097)
Q Consensus       560 ~~l~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~  639 (1097)
                      ..|...|+|||..||+|||+++++++++. ....|.||||||+||||||+|+|+|+++++.+...+.+++|||||.+++.
T Consensus       663 rslv~kLKpHQv~GvqFMwd~~~eSlkr~-~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~  741 (1567)
T KOG1015|consen  663 RSLVIKLKPHQVDGVQFMWDCCCESLKRT-KKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTAL  741 (1567)
T ss_pred             HhHHhhcCcccccchhHHHHHHHHHHHhh-cCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHH
Confidence            99999999999999999999999999987 55889999999999999999999999999999999999999999999999


Q ss_pred             hhHHhhcccccC--CCcccEEEeecccch-hHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHH-HHHHhccC
Q 001337          640 NWKQEFMKWRPS--ELKPLRVFMLEDVSR-DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMARE-ICHALQDG  715 (1097)
Q Consensus       640 qW~~Ei~k~~p~--~~~~l~V~~~~~~~~-~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~-~~~ll~~~  715 (1097)
                      ||.+||.+|.++  ...++.|+.+...++ ..|...+..|+..++|+|++|++||++..+..++.++.... .+.++.++
T Consensus       742 NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpG  821 (1567)
T KOG1015|consen  742 NWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPG  821 (1567)
T ss_pred             HHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCC
Confidence            999999999985  344789999888877 78899999999999999999999999999999988875444 44556669


Q ss_pred             CCEEEecccchhcccchhHHHHHhhhccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCC
Q 001337          716 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNS  795 (1097)
Q Consensus       716 ~dlVIiDEAH~iKN~~S~~~kal~~l~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s  795 (1097)
                      ||+|||||||.|||..|.+++|+.++++++||+|||||+|||+.|||||++|+.|++||+..+|+++|.+||++|++.++
T Consensus       822 PD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dS  901 (1567)
T KOG1015|consen  822 PDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADS  901 (1567)
T ss_pred             CCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCccc--ccchHHHHHhh
Q 001337          796 TSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTND--RVSNEKIRKSF  873 (1097)
Q Consensus       796 ~~~d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~--~~~~~~~~~~~  873 (1097)
                      +..++++|++|+|+|+.+|++||+|+++.++.+.||||++|||.|.||+.|..||+.|+. +.+...  .....+....+
T Consensus       902 T~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~-h~~~~G~d~eg~~g~~arl  980 (1567)
T KOG1015|consen  902 TMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD-HLTGVGNDSEGGRGAGARL  980 (1567)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh-hccccCCccccccchhhhH
Confidence            999999999999999999999999999999999999999999999999999999999998 332222  12223466789


Q ss_pred             hhhHHHHHHHhcCcceeeecccC----CCCCccc---cccCCC------------------------CCCCccceeec--
Q 001337          874 FAGYQALAQIWNHPGILQLTKDK----GYPSRED---AEDSSS------------------------DENMDYNVVIG--  920 (1097)
Q Consensus       874 l~~l~~Lrqi~~hP~Ll~~~~~~----~~~~~e~---~~d~~~------------------------~~~~~~~~~~~--  920 (1097)
                      |+.|+.|++||+||+.+++....    .+....+   ...+.+                        ++.+......+  
T Consensus       981 f~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ 1060 (1567)
T KOG1015|consen  981 FQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDV 1060 (1567)
T ss_pred             HHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCch
Confidence            99999999999999999875431    1111111   000000                        11122211111  


Q ss_pred             ----cCcCCccccccc----------------------cCCCCccchhhhhhhhhcccccccccCcceehhhHHHhhhcc
Q 001337          921 ----EKPRNMNDFLQG----------------------KNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSN  974 (1097)
Q Consensus       921 ----~~~~~~~d~~~~----------------------~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~  974 (1097)
                          .+.+....+..+                      .......+..||.+++.+..+..+.+|+||.+|++||+.+.+
T Consensus      1061 ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mcee 1140 (1567)
T KOG1015|consen 1061 EVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEE 1140 (1567)
T ss_pred             hhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHH
Confidence                111111111111                      111122345799999999999999999999999999999999


Q ss_pred             CCCceeEEecCCCchhHHHHHHhcCCCCCC-----------CCcccccCCceeeccCCccchHHHHHHHhhcccccceee
Q 001337          975 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGK-----------QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVK 1043 (1097)
Q Consensus       975 ~geKVLIFSq~~~~ld~L~~~L~~l~~~~~-----------~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~ 1043 (1097)
                      .|+|+|||||+..+|++|+.+|....+.+.           +|. |..|.+|++|||++...+|+++.++||++.|-+++
T Consensus      1141 IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGk-W~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGK-WLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred             hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccc-eecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence            999999999999999999999998766554           555 99999999999999999999999999999999999


Q ss_pred             EEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhcccccccccc
Q 001337         1044 CTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLT 1096 (1097)
Q Consensus      1044 VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VYr 1096 (1097)
                      +|||||+|||.||||.+||||||||..|||+++.|+|+|||||||+|||||||
T Consensus      1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred             EEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence            99999999999999999999999999999999999999999999999999997

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>smart00249 PHD PHD zinc finger	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG0957 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>KOG0954 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical	Back alignment and domain information

>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1097
1z3i_X		644	Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA		2e-54
3mwy_W		800	Crystal Structure Of The Chromodomain-atpase Portio		1e-38
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		1e-24
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		1e-09
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		2e-23
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		2e-08
1z5z_A		271	Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal		9e-10
2jm1_A		141	Structures And Chemical Shift Assignments For The A		9e-05
2ld1_A		142	Structures And Chemical Shift Assignments For The A		1e-04
3ql9_A		129	Monoclinic Complex Structure Of Atrx Add Bound To H		4e-04
3a1a_A		144	Crystal Structure Of The Dnmt3a Add Domain Length =		9e-04

>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644