Citrus Sinensis ID: 001343
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1096 | 2.2.26 [Sep-21-2011] | |||||||
| Q84JM4 | 1108 | Topless-related protein 3 | yes | no | 0.979 | 0.969 | 0.744 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.993 | 0.962 | 0.702 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.984 | 0.954 | 0.604 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.974 | 0.953 | 0.601 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.968 | 0.934 | 0.595 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.364 | 0.294 | 0.242 | 2e-12 | |
| Q93847 | 395 | Uncharacterized WD repeat | yes | no | 0.181 | 0.503 | 0.25 | 3e-11 | |
| Q9V3J8 | 361 | Protein will die slowly O | yes | no | 0.176 | 0.534 | 0.272 | 4e-10 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.208 | 0.150 | 0.256 | 1e-09 | |
| Q54KL5 | 335 | WD repeat-containing prot | no | no | 0.180 | 0.591 | 0.252 | 1e-09 |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1709 bits (4427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 841/1130 (74%), Positives = 948/1130 (83%), Gaps = 56/1130 (4%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVH+LEKESGFFFN KYF+EKV AG+WD+VE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQ+KAKAV+ILV DL+VFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTKTARGIML ELKKLIEANPLFRDKL FPTL+SSRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+ PNGPLAP+ VN PV + KPA+Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVTTLTKPAAYPSLGPHVPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQN 299
AAANA ALA WMA AS +S+VQAAVVT + +P PQNQ+S+LK PRTPP TPG+VDYQN
Sbjct: 241 GPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQT-WSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHE LMKRLRPAPS EEVTY + R Q WSL+DLP A++LHQGSTV SM+F+P T
Sbjct: 301 PDHE-LMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQGSTVTSMEFYPMQNT 359
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+ GEITLWELA R+RLVS+PFKIWDM+ CS FQA I K+ PISV+RVAWSPDG
Sbjct: 360 LLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAWSPDG 419
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
N++GVAFTKHLIQLY+++G NDLRQH++IDAHVGAVNDLAFA PN+ LCV+TCGDDKLIK
Sbjct: 420 NFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIK 479
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW++SGRK F FEGH+APVYSICPH+KENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 480 VWDVSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAPG 539
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
WCT MLYSADG+RLFSCGTSKDGDSFLVEWNESEG+IKRTY F+KK GVVQFDT++N
Sbjct: 540 KWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQFDTSKN 599
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLAVGED QIKFWDM+N+N+LTSTDAEGGLP LP LRF+K+GNLLAVTTADNGFKILAN
Sbjct: 600 HFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGFKILAN 659
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718
G RSLRA+E P E +RTP++ A+ + ++V NCKVER SPVR S ++NGV
Sbjct: 660 PAGFRSLRAMETPASETMRTPVDFKAVPGAPVASV------NCKVERGSPVRHSQMLNGV 713
Query: 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778
DP+ K R +DD TDKPK WQLAEI+D QC T+P++ +S+KVV+LLYTNS G
Sbjct: 714 DPS-----KSR-IDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSGAG 767
Query: 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
+LALGSNG+Q+LWKW NEQNPSGKATA+ VPQHW P+SGLLM NDV+GVNLE A PCIA
Sbjct: 768 ILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPCIA 827
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
LSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNN+IAIG EDSTIH
Sbjct: 828 LSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGMEDSTIH 887
Query: 899 IYNVRVDE--------------------------------LCVWSIDTWEKRKSVTIHIP 926
IYNVRVDE +C WSIDTWEKRKSV I +P
Sbjct: 888 IYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQMP 947
Query: 927 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 986
AGK GDTRVQF+ DQ+R+LVVHETQLA++DASKME IRQW PQD+LSAPIS AVY+CN
Sbjct: 948 AGKAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACN 1007
Query: 987 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1046
SQL++ TF DGNIGVFDAD+LRLRC I+PS YL G+Q + PLVVAAHP +PNQFA
Sbjct: 1008 SQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLP----QGNQGLSPLVVAAHPQDPNQFA 1063
Query: 1047 IGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTSNHTPDQLQR 1096
+GL DGSVK+MEP+E EGKWG+ PP + +NS S+TSN TP+QLQR
Sbjct: 1064 VGLNDGSVKMMEPTEGEGKWGMIPPSE--AINS---PSTTSNQTPEQLQR 1108
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1610 bits (4169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 799/1138 (70%), Positives = 915/1138 (80%), Gaps = 49/1138 (4%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHKLE+ESGFFFN+KYFEEK AG+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAV+IL DLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IM ELKKLIEANPLFR+KLAFP+ K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHS-PFP 239
WQHQLCKNPR NPDIKTLF DH+CSP NG A TPVNLPVAAVA+P+++ LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PTAAAANANA-LAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTP-GMVDY 297
A A LAGWMAN + SSSV + VV AS P+ +QV+ LKHPR P G++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLR A ++ EVTY + H SLDDLPR V ++ QGS VISMDFHPSH
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHH 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLL VG S+GE+TLWE+ R+++V++PFKIW+MAACS+ FQ SI K+ ISV+RVAWSPD
Sbjct: 361 TLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPD 420
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN +GV+FTKHLI +Y+Y GS DLRQH +IDAHVG VNDLAFA+PNK +CVVTCGDDKLI
Sbjct: 421 GNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+LSG+KLF FEGHEAPVYSICPH KENIQFIFSTA+DGKIKAWLYD +GSRVDYDAP
Sbjct: 480 KVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
G WCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG +KRTY GFRKKS GVVQFDTT+
Sbjct: 540 GQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTR 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLAVGED+QIKFW+MDN N+LT +AEGGLPNLPRLRF+K+GNLLAVTTADNGFKILA
Sbjct: 600 NRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER---SSPVRPSPI 714
N GLR+LRA E FEA + S+ +KVS S+ SS +PA K+E SP RP+PI
Sbjct: 660 NTDGLRTLRAFEARSFEASKA---SIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPI 716
Query: 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774
NG++ SR+M+KPR +D V DK KP +L EIVD QCR VTMP+S D+ SKV RLLYTN
Sbjct: 717 PNGIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTN 775
Query: 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 834
S VG+LALGSNGVQ+LWKW RNEQNP+GKATAS PQHW P+SGLLMANDV N E +V
Sbjct: 776 SGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE-NPEGSV 834
Query: 835 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894
PCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG ED
Sbjct: 835 PCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMED 894
Query: 895 STIHIYNVRVDE--------------------------------LCVWSIDTWEKRKSVT 922
S+IHIYNVRVDE L W+ D+WEK+KS
Sbjct: 895 SSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSA 954
Query: 923 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAV 982
I +P GK P GDTRVQF+ DQ+++LV HETQLAIYDASKME I +W PQ+ALS+PI+ A
Sbjct: 955 IQLPPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSAS 1014
Query: 983 YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1042
YSCNSQLV+A+F DGNI VFDA++LRLRC IAPS Y+ P S ++P V+ AHP EP
Sbjct: 1015 YSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYM-PQPTPNSAPIFPQVITAHPQEP 1073
Query: 1043 NQFAIGLTDGSVKVMEPSESEGKWGVSPPVDN---GILNSR-TTSSSTSNHTPDQLQR 1096
NQ A+GL+DGSVKV+EPSE +WGV + G N R ++SS+ +N + DQ+QR
Sbjct: 1074 NQLAVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQR 1131
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1384 bits (3583), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 694/1148 (60%), Positives = 847/1148 (73%), Gaps = 69/1148 (6%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPV-AAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PPNG AP+PVN P+ + K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQV-SVLKHPRTPPTPGMVDYQ 298
PTA+ LAGWM S+ SSV V+A +I + + + LKHPRTPPT +DY
Sbjct: 241 PTASPV-PTPLAGWM---SSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH----QTWSLDDLPRTVAVSLHQGS 345
+ D E + KR RP ++EV ++S H + DDLP+TVA +L QGS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND++F+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV+TCGDDK IKVW+ +G K FEGHEAPVYS+CPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDYDAPG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD V +LT+ D +GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704
AV+ +N KI+AN+ GLR L EN E+ + I S+A +A++A S+G +
Sbjct: 657 AVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIA-AAAAAAATSAG-----HAD 710
Query: 705 RSSPVRPSPIINGVDPTSRSMD--KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762
RS+ V I G++ SR+M KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 711 RSANVVS---IQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLR 767
Query: 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822
+ K+ RL++TNS +LAL SN + LWKW RNE+N +GKATAS PQ W P+SG+LM
Sbjct: 768 VA-KISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMT 826
Query: 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882
NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHP
Sbjct: 827 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 886
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDE--------------------------------LCVW 910
QDNNIIAIG +DSTI IYNVRVDE LCVW
Sbjct: 887 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVW 946
Query: 911 SIDTWEKRKSVTIHIPAGK--TPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 968
+ D WEK++S + +P G+ + DTRVQF+ DQ LVVHETQLAIY+ +K+E ++QW
Sbjct: 947 NTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQW 1006
Query: 969 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1028
+++L API+ A +SC+SQLV+A+F D + VF + LRLRC + PS YL S+ N +
Sbjct: 1007 AVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN- 1064
Query: 1029 TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTSN 1088
V+PLV+AAHP EPN FA+GL+DG V + EP ESEGKWGV+PP +NG + T+ S
Sbjct: 1065 -VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGA 1123
Query: 1089 HTPDQLQR 1096
DQ QR
Sbjct: 1124 SASDQPQR 1131
|
Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1377 bits (3564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 691/1148 (60%), Positives = 837/1148 (72%), Gaps = 80/1148 (6%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPV-AAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PN AP+PVN P+ ++ K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQV-SVLKHPRTPPTPGMVDYQ 298
PT + LAGWM S+ SSV V+ I + + + LKHPRTPP+ VDY
Sbjct: 241 PTPSPV-PTPLAGWM---SSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH---QTWSL-DDLPRTVAVSLHQGS 345
+ D + + KR RP ++EV T+ H QT+ DDLP+TVA +L QGS
Sbjct: 297 SGDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND+AF+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV TCGDDK IKVW+ +G K + FEGHEAPVYSICPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDY+APG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD + +LT+ DA+GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704
AV+ DN K++AN+ GLR L VEN E+ + I S+ + VE
Sbjct: 657 AVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPM-----------------VE 699
Query: 705 RSSPVRPSPIINGVDPTSRSMD--KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762
R + V P +NG SR+M KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 700 RPASVVSIPGMNG---DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMR 756
Query: 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822
+ K+ RL++TNS +LAL SN + LWKW RN++N +GKATAS PQ W P+SG+LM
Sbjct: 757 VT-KISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMT 815
Query: 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882
NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHP
Sbjct: 816 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 875
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDE--------------------------------LCVW 910
QDNNIIAIG +DSTI IYNVRVDE LCVW
Sbjct: 876 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVW 935
Query: 911 SIDTWEKRKSVTIHIPAGKTPTG--DTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 968
+ D WEK+KS + IP G++ + DTRVQF+ DQV LVVHETQLAIY+ +K+E ++QW
Sbjct: 936 NTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW 995
Query: 969 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1028
P +API+ A +SC+SQL++ +F D I VF + LRLRC + PS YL S+ N +
Sbjct: 996 -PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSN- 1053
Query: 1029 TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTSN 1088
V+PLV+AAHP E N FA+GL+DG V + EP ESEGKWGV+PP +NG ++ T + S
Sbjct: 1054 -VHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGA 1112
Query: 1089 HTPDQLQR 1096
DQ QR
Sbjct: 1113 SASDQPQR 1120
|
Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1329 bits (3440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 675/1133 (59%), Positives = 826/1133 (72%), Gaps = 72/1133 (6%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFK++VH+LEKESGFFFNM+YFE+ V AG+WD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD++D AKAVDILV +LKVFSTFNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTK+ARGIML ELKKLIEANPLFRDKL FP+LK+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPV-NLPVAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DHTC PNG P+P N + +V K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPV--PQNQVSVLKH--PRTPPTPGM- 294
PT A +LAGWM N S VQ V+A I + P + VS+LK PR+PPT +
Sbjct: 241 PTPAPLTT-SLAGWMPNPS----VQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLS 295
Query: 295 VDYQNPDHEQLMKRLRPAPSAE----------EVTY--SSSRHQTWSLDDLPRTVAVSLH 342
+DYQ D E ++KR RP ++ VTY S H T+S DDLP+ V+ L
Sbjct: 296 MDYQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILS 355
Query: 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402
QGS + SMDFHP QT+LLVG++ G+I +WE+ R++LVS+ FK+WD+A C++ QAS+
Sbjct: 356 QGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLA 415
Query: 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP 462
+ +V+RV WSPDG +GVA++KH++ +YSY G DLR H +IDAH G VNDLAF+ P
Sbjct: 416 SEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQP 475
Query: 463 NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIK 521
N+ LCVVTCG+DK IKVW+ ++G KL FEGHEAPVYS+CPH KENIQFIFSTA+DGKIK
Sbjct: 476 NQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIK 535
Query: 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581
AWLYD MGSRVDYDAPG CT+M Y ADG+RLFSCGTSK+G+SF+VEWNESEG +KRTY
Sbjct: 536 AWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYL 595
Query: 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641
G K+S GVVQFDT +N FL G++ Q+KFWDMD+V++L+ST AEGGLP+ P LR +KEG
Sbjct: 596 GLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEG 655
Query: 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK--VSASSAVSSGTPA 699
LLAV+T DNG KILANA G R L ++ N ++ R P SVA V +S T
Sbjct: 656 TLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGM 715
Query: 700 NCKV-ERSSPVRPSPIINGVDPTSRSMD--KPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756
+ + ERS PV + G++ +RS+ KPR DD +K K W+L EI + Q R +
Sbjct: 716 SLSMGERSGPVAS---VTGLNGDNRSLPDVKPRIADDA-EKSKTWKLTEISERSQLRTLR 771
Query: 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816
+P+ T ++VV+L+YTNS +LAL N KLWKW ++E+N GKA ++ PQ W PS
Sbjct: 772 LPD-TLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPS 830
Query: 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAST 876
SG+LM ND N E+ VPC ALSKNDSYVMSA+GGKISLFNMMTFK MTTFM+PPPA+T
Sbjct: 831 SGVLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAAT 890
Query: 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDE------------------------------ 906
LAFHPQDNNIIAIG +DS+I IYNVRVDE
Sbjct: 891 SLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGAD 950
Query: 907 --LCVWSIDTWEKRKSVTIHIPAGKTPT--GDTRVQFNADQVRMLVVHETQLAIYDASKM 962
LCVWS+D WEK+ S I IP+G +P TRVQF+ DQ+ +LVVH +QLAIY+A K+
Sbjct: 951 SQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKL 1010
Query: 963 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS 1022
E ++QW P+++ S ++ AVYSC+SQ ++A F DG++ + A TL+L+C I P++YL PS
Sbjct: 1011 ENMKQWIPKES-SGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYL-PS 1068
Query: 1023 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNG 1075
N S VYP VAAHP EPNQFA+GLTDG V V+EP EGKWG+S P +NG
Sbjct: 1069 --NPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENG 1119
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 114/471 (24%), Positives = 179/471 (38%), Gaps = 71/471 (15%)
Query: 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM----------------------RDRL 380
GS+V+S+ F Q + GS + I +W+ A R+R+
Sbjct: 840 HGSSVLSVAFSADGQRVA-SGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERV 898
Query: 381 VS----KPFKIWDMAA--CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434
S K KIWD A+ C+ + + V VA+SPDG V H I+++
Sbjct: 899 ASGSDDKTIKIWDAASGTCTQTLEGHGGR-----VQSVAFSPDGQRVASGSDDHTIKIWD 953
Query: 435 YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGH 493
A S Q ++ H +V +AF+ + V + DK IK+W+ SG EGH
Sbjct: 954 -AASGTCTQ--TLEGHGSSVLSVAFSPDGQR--VASGSGDKTIKIWDTASGTCTQTLEGH 1008
Query: 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGS 551
V+S+ + Q + S + D IK W DT GH W ++++S DG
Sbjct: 1009 GGSVWSVA--FSPDGQRVASGSDDKTIKIW--DTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064
Query: 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611
R+ S D + W+ GT +T G S V F + D IK
Sbjct: 1065 RV----ASGSDDHTIKIWDAVSGTCTQTLEG-HGDSVWSVAFSPDGQRVASGSIDGTIKI 1119
Query: 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671
WD + + + GG + + FS +G +A + D KI A G
Sbjct: 1120 WDAASGTCTQTLEGHGGW--VHSVAFSPDGQRVASGSIDGTIKIWDAASG------TCTQ 1171
Query: 672 PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING----VDPTSRSMDK 727
E ++SVA S + K+ ++ + + G V + S D
Sbjct: 1172 TLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDG 1231
Query: 728 PRTVDDVTDKP-KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
R +D K W A SG C T + +++ + YTN+ +
Sbjct: 1232 QRVASGSSDNTIKIWDTA----SGTC---TQTLNVGSTATCLSFDYTNAYI 1275
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q93847|YZLL_CAEEL Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S + +SPDG Y+G I+++ D + H +N+ +++ +KL
Sbjct: 109 SISGIKFSPDGRYMGSGSADCSIKIWRM----DFVYEKTLMGHRLGINEFSWSSDSKL-- 162
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+V+C DDKL+KV+++ SGR + +GH V+ C + I S + D I+ W
Sbjct: 163 IVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCC--FNPSGTLIASGSFDETIRIWC-- 218
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ PGH +++ ++ DG+ L S D + W+ + GT +T
Sbjct: 219 ARNGNTIFSIPGHEDPVSSVCFNRDGAYL----ASGSYDGIVRIWDSTTGTCVKTLIDEE 274
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620
V+F + LA ++ +K WD + +L
Sbjct: 275 HPPITHVKFSPNGKYILASNLNNTLKLWDYQKLRVL 310
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ ++LL
Sbjct: 74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129
Query: 468 VVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +KVWELS G+ L +GH Y C + I S + D ++ W D
Sbjct: 130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 184
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 185 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 240
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 241 NPPVSFVKFSPNGKYILAATLDNTLKLWD 269
|
Essential for viability. Drosophila melanogaster (taxid: 7227) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 111/250 (44%), Gaps = 21/250 (8%)
Query: 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF 459
S+F + SV VA+SPDG + +++ + A +L H VN + F
Sbjct: 858 SVFTKILGSVLTVAFSPDGKLFATGDSGGIVRFWEAATGKELL---TCKGHNSWVNSVGF 914
Query: 460 AYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG 518
+ K+L + DD+ +++W++ SG+ L F+GH + V S+ N + S + D
Sbjct: 915 SQDGKML--ASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVV--FSPNSLMLASGSSDQ 970
Query: 519 KIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576
++ W D Y GH W ++ ++ DGS L + GD + W+ S
Sbjct: 971 TVRLW--DISSGECLYIFQGHTGWVYSVAFNLDGSML----ATGSGDQTVRLWDISSSQC 1024
Query: 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRL 635
+ G VV ++ LA G D Q ++ WD+ + N L + +G + +
Sbjct: 1025 FYIFQGHTSCVRSVVF--SSDGAMLASGSDDQTVRLWDISSGNCLYTL--QGHTSCVRSV 1080
Query: 636 RFSKEGNLLA 645
FS +G +LA
Sbjct: 1081 VFSPDGAMLA 1090
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 12/210 (5%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S V +SPDG ++ A I+++ G+ D + ++ H ++D+A++ +KL+C
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIW---GAYDGKFERTLEGHKEGISDIAWSQDSKLIC 104
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+ DDK IK+W++ SG+ + +GH+ V+ + + + N+ I S + D ++ W +
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDVN 160
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586
T A T + ++ DG+ + S S DG + W+ + G + T + K
Sbjct: 161 TGECTKMISAHSDPVTGVHFNRDGTLVVS--GSYDGTVRI--WDTTTGQLLNTISTEDGK 216
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616
V+F LA D+ ++ W +N
Sbjct: 217 EVSFVKFSPNGKFVLAGTLDNTLRLWSYNN 246
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1096 | ||||||
| 255542820 | 1132 | WD-repeat protein, putative [Ricinus com | 1.0 | 0.968 | 0.829 | 0.0 | |
| 449454049 | 1127 | PREDICTED: topless-related protein 3-lik | 0.995 | 0.968 | 0.812 | 0.0 | |
| 224123676 | 1133 | predicted protein [Populus trichocarpa] | 0.993 | 0.961 | 0.805 | 0.0 | |
| 356576819 | 1131 | PREDICTED: topless-related protein 3-lik | 1.0 | 0.969 | 0.798 | 0.0 | |
| 357511795 | 1129 | hypothetical protein MTR_7g112460 [Medic | 0.994 | 0.965 | 0.818 | 0.0 | |
| 87162556 | 1128 | Lissencephaly type-1-like homology motif | 0.998 | 0.969 | 0.797 | 0.0 | |
| 356535043 | 1130 | PREDICTED: topless-related protein 3-lik | 1.0 | 0.969 | 0.801 | 0.0 | |
| 357441817 | 1140 | WD repeat-containing protein [Medicago t | 0.998 | 0.959 | 0.788 | 0.0 | |
| 224125092 | 1124 | predicted protein [Populus trichocarpa] | 0.993 | 0.968 | 0.813 | 0.0 | |
| 356505795 | 1131 | PREDICTED: topless-related protein 3-lik | 1.0 | 0.969 | 0.807 | 0.0 |
| >gi|255542820|ref|XP_002512473.1| WD-repeat protein, putative [Ricinus communis] gi|223548434|gb|EEF49925.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1906 bits (4938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 939/1132 (82%), Positives = 1012/1132 (89%), Gaps = 36/1132 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKF ESVHKLEK+SGF+FNMKYFEEKVQAG+W+EVE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFMESVHKLEKDSGFYFNMKYFEEKVQAGEWEEVENYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD QDKAKAV+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
LSNFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LSNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLGFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTCSPPNGPLAP PVNLPVAAVAKP++Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPPNGPLAPAPVNLPVAAVAKPSAYPSLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
TAAAANA ALAGWMANASASSSVQAAVVTASS+PVPQNQVSVLK PRTPPT PGMVDYQN
Sbjct: 241 TAAAANAGALAGWMANASASSSVQAAVVTASSMPVPQNQVSVLKRPRTPPTAPGMVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHEQLMKRLRPA S +EVTY +SR Q +WSLDDLPRTVA+++HQGS V SMDFHPSHQT
Sbjct: 301 PDHEQLMKRLRPAQSVDEVTYPTSRQQASWSLDDLPRTVALTMHQGSAVTSMDFHPSHQT 360
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+NGE+TLWEL R+RLVSKPFKIW++ +CSL FQAS KD P+SV+RV WSPDG
Sbjct: 361 LLLVGSANGEVTLWELVQRERLVSKPFKIWEITSCSLQFQASFVKDAPVSVNRVTWSPDG 420
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+ VG AF KHLI LY+Y GS+DLRQ +IDAH G VNDLAFA+PNK LCVVTCGDDKLIK
Sbjct: 421 SLVGAAFNKHLIHLYAYTGSSDLRQQLEIDAHAGGVNDLAFAHPNKQLCVVTCGDDKLIK 480
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 481 VWDLGGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNVGSRVDYDAPG 540
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN-GVVQFDTTQ 597
HWCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG IKR YAGFRKKS GVVQFDTTQ
Sbjct: 541 HWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGAIKRHYAGFRKKSTAGVVQFDTTQ 600
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
NHFLA GED QIKFWDMDN N+LTS DA+GGLP+LPRLRF+KEGNLLAVTTADNGFKI+A
Sbjct: 601 NHFLAAGEDGQIKFWDMDNTNVLTSIDADGGLPSLPRLRFNKEGNLLAVTTADNGFKIIA 660
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717
NA GLR+LRAVE P FEALR+PIES A+KVS +S V++ +P N KVERSSPVRPSPI+NG
Sbjct: 661 NAAGLRALRAVETPGFEALRSPIESAAIKVSGASGVANISPVNLKVERSSPVRPSPILNG 720
Query: 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
VDP SRSM+K RTVDDV DK KPWQLAEIV+ +CRLVT+P+STD+SSKVVRLLYTNS V
Sbjct: 721 VDPMSRSMEKLRTVDDVIDKTKPWQLAEIVEPDECRLVTLPDSTDSSSKVVRLLYTNSGV 780
Query: 778 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837
G+LALGSNG+QKLWKW R++QNPSGKATA AVPQHW P+SGLLMANDV+GVNLEEAVPCI
Sbjct: 781 GILALGSNGIQKLWKWARSDQNPSGKATAGAVPQHWQPNSGLLMANDVSGVNLEEAVPCI 840
Query: 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
ALSKNDSYVMSA GGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 841 ALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 900
Query: 898 HIYNVRVDE--------------------------------LCVWSIDTWEKRKSVTIHI 925
HIYNVRVDE LCVWSIDTWEKRKS TI I
Sbjct: 901 HIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSFTIQI 960
Query: 926 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 985
PAGK PTG TRVQF++DQ R+LVVHETQLAIYDASKM+RIRQW PQDA+SAPIS A YSC
Sbjct: 961 PAGKAPTGVTRVQFHSDQTRLLVVHETQLAIYDASKMDRIRQWVPQDAMSAPISYAAYSC 1020
Query: 986 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1045
NSQL+FA+F DGNIGVFDAD+LRLRC IAPS YLSP+VLNGSQ++YPLVVAAHP E NQ
Sbjct: 1021 NSQLIFASFRDGNIGVFDADSLRLRCRIAPSAYLSPAVLNGSQSIYPLVVAAHPHETNQL 1080
Query: 1046 AIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSR-TTSSSTSNHTPDQLQR 1096
A+GLTDGSVKVMEP S+GKWG SPPVDNGILN R T+SS+TSNHTPDQLQR
Sbjct: 1081 AVGLTDGSVKVMEPKASDGKWGTSPPVDNGILNGRTTSSSTTSNHTPDQLQR 1132
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454049|ref|XP_004144768.1| PREDICTED: topless-related protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1894 bits (4907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 920/1132 (81%), Positives = 1002/1132 (88%), Gaps = 41/1132 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVH+LEKESGF+FNMKYFE+KVQAG+W+EVEKYLSG+
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFYFNMKYFEDKVQAGEWEEVEKYLSGY 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR DKAKAV+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRSDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTK AR IMLIELKKLIEANPLFRDKL FP LKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKAARSIMLIELKKLIEANPLFRDKLVFPALKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLF DHTCSPPNGPLAPTPVNLPVA KPA YA LG HSPFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFMDHTCSPPNGPLAPTPVNLPVA---KPAPYAPLGAHSPFPP 237
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
T A ANANALAGWMANASASSSVQAAVVTASSIPVPQNQVS+LKH RTPP+ PGMVDYQN
Sbjct: 238 TGATANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSILKHARTPPSNPGMVDYQN 297
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
P+H+QLMKRLR A S EEVTY + R Q +WS++DLPRTVA +LHQGSTV SMDFHP+H T
Sbjct: 298 PEHDQLMKRLRSAQSVEEVTYPAPRQQASWSIEDLPRTVAFTLHQGSTVTSMDFHPTHHT 357
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+NGE+TLWEL +R+RL+SKPFK+WD+++ SL FQA+I KD PISVSRV WSPDG
Sbjct: 358 LLLVGSNNGEVTLWELGIRERLISKPFKLWDLSSRSLAFQAAIVKDTPISVSRVTWSPDG 417
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+VGVAFTKHL+ LYSY SN+L Q S+IDAHVG VNDLAFA+PNK LCVVTCG+DKLIK
Sbjct: 418 TFVGVAFTKHLVHLYSYNSSNELNQQSEIDAHVGGVNDLAFAHPNKQLCVVTCGEDKLIK 477
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW++ GRKLF FEGHEA VYSICPHHKENIQFIFSTA+DGKIKAWLYD MGSRVDYDAPG
Sbjct: 478 VWDIGGRKLFTFEGHEASVYSICPHHKENIQFIFSTALDGKIKAWLYDHMGSRVDYDAPG 537
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
WCTTMLYSADGSRLFSCGTSKDGDS+LVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 538 KWCTTMLYSADGSRLFSCGTSKDGDSYLVEWNESEGAIKRTYLGFRKKSTGVVQFDTTQN 597
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLAVGEDSQIKFWDMDNVNILT TDAEGGLP+LPRLRF+KEGNLLAVTT DNGFKILAN
Sbjct: 598 HFLAVGEDSQIKFWDMDNVNILTYTDAEGGLPSLPRLRFNKEGNLLAVTT-DNGFKILAN 656
Query: 659 AIGLRSLRAVENP-PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717
A+G+RSL+A+E+ PFEALR+P+ES ALKVS SAV+S +P NCKVERSSPVRP IING
Sbjct: 657 AVGMRSLKAIESTTPFEALRSPMES-ALKVSGPSAVASVSPVNCKVERSSPVRPPSIING 715
Query: 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
V+ R++DK RTV+D DK KPWQLAEIVD CRLVTMP++ D+S KVVRLLYTNS V
Sbjct: 716 VEGLGRNLDKARTVEDAIDKAKPWQLAEIVDPASCRLVTMPDNADSSHKVVRLLYTNSGV 775
Query: 778 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837
GLLALGSNG+QKLWKW RNEQNPSGKATA+ VPQHW P+SGLLM NDV GVNLEEAVPCI
Sbjct: 776 GLLALGSNGIQKLWKWTRNEQNPSGKATANVVPQHWQPNSGLLMTNDVLGVNLEEAVPCI 835
Query: 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
ALSKNDSYVMSA+GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 836 ALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTI 895
Query: 898 HIYNVRVDE--------------------------------LCVWSIDTWEKRKSVTIHI 925
HIYNVRVDE LC+WSIDTWEKRKS+TI +
Sbjct: 896 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCLWSIDTWEKRKSITIQL 955
Query: 926 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 985
PAGK P GDTRVQF++DQ+R+LVVHETQ+AIYDASKM+RIRQW PQDAL APIS A YSC
Sbjct: 956 PAGKAPVGDTRVQFHSDQIRLLVVHETQIAIYDASKMDRIRQWVPQDALPAPISYAAYSC 1015
Query: 986 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1045
NSQLV+ATFCDGN+GVFDADTLRLRC IAPS YL +VLN SQ +YPLVVA HPL+PNQ
Sbjct: 1016 NSQLVYATFCDGNVGVFDADTLRLRCRIAPSVYLPSAVLNSSQAIYPLVVATHPLDPNQL 1075
Query: 1046 AIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1096
AIGL+DGSVKV+EP+ESEGKWGVSPP+DNGILN RT SSS TSNHTPDQ+QR
Sbjct: 1076 AIGLSDGSVKVIEPTESEGKWGVSPPMDNGILNGRTASSSTTSNHTPDQIQR 1127
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123676|ref|XP_002330180.1| predicted protein [Populus trichocarpa] gi|222871636|gb|EEF08767.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1888 bits (4890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 918/1140 (80%), Positives = 995/1140 (87%), Gaps = 51/1140 (4%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVHKLEKESGF+FNMKYFEEKV AG+WDEVEKYL+GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVLAGEWDEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAK V+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKGVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IML+ELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLVELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPAS-YASLGTHSPFP 239
WQHQLCKNPR NPDIKTLFTDHTCSP NGPLA PVNLPVAA A + Y LG H PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPMNGPLAAAPVNLPVAAAAAKPAAYTPLGAHGPFP 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTP-GMVDYQ 298
T AAAN +ALA WMAN SASSSVQAAVVTASSIP+PQNQV VLK PRTPPT G+VDYQ
Sbjct: 241 ATGAAANTSALASWMANTSASSSVQAAVVTASSIPIPQNQVPVLKRPRTPPTALGIVDYQ 300
Query: 299 NPDHEQLMKRLRPAPSAEEVTYSSSR-HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
NPDHE L+KRLRPA S EEVTY +SR H +WSL+ LPRTVA SLH GS V+SMDFHPSH
Sbjct: 301 NPDHE-LIKRLRPAQSVEEVTYPASRQHASWSLEYLPRTVAFSLHPGSAVMSMDFHPSHH 359
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLLLVGS NGEITLWEL R+RL SKPFKIWDM+ACSL FQAS FKD ISV+RVAWSPD
Sbjct: 360 TLLLVGSVNGEITLWELISRERLFSKPFKIWDMSACSLQFQASGFKDASISVTRVAWSPD 419
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN+VG AF KHLI LY+Y G NDLRQH +IDAHVG VNDLAFA+PNK LCVVTCGDDKLI
Sbjct: 420 GNFVGAAFNKHLIHLYAYNGPNDLRQHLEIDAHVGGVNDLAFAHPNKQLCVVTCGDDKLI 479
Query: 478 K--------VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG 529
K VW+L+GRKLFNF GHEAPVY+ICPHHKENIQFIFSTAIDGKIKAWLYD MG
Sbjct: 480 KAIYIMLKQVWDLTGRKLFNFGGHEAPVYNICPHHKENIQFIFSTAIDGKIKAWLYDNMG 539
Query: 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589
SRVDYDAPG WCTTMLYS DGSRLFSCGTSKDG+S+LVEWNESEG+IKR++ GFRKKS G
Sbjct: 540 SRVDYDAPGRWCTTMLYSTDGSRLFSCGTSKDGESYLVEWNESEGSIKRSFVGFRKKSAG 599
Query: 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649
VVQFDTTQNHFLA G+D QIKFWDM+N N+LTSTDA+GGL LPRLRF++EGNLLAV+TA
Sbjct: 600 VVQFDTTQNHFLAAGDDGQIKFWDMENTNVLTSTDADGGLQTLPRLRFNREGNLLAVSTA 659
Query: 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709
DNGFKILANA GLRSLRAVE FEALR+P+ES A+KVS +S++++ +P NCKVER+SPV
Sbjct: 660 DNGFKILANAAGLRSLRAVETQSFEALRSPMESAAIKVSGASSIANASPVNCKVERNSPV 719
Query: 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR 769
RPSPI+NGVDP +RSM+KPRTVDDV DK KPWQLAEI D +CRLVT+PES DTSSKVVR
Sbjct: 720 RPSPILNGVDPLNRSMEKPRTVDDVIDKTKPWQLAEIADPSECRLVTLPESADTSSKVVR 779
Query: 770 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829
LLYTNS VG+LALG+NG+QKLWKW RNEQNPSGKATAS PQHW P+SGLLM NDV+GVN
Sbjct: 780 LLYTNSGVGMLALGANGIQKLWKWPRNEQNPSGKATASVAPQHWQPNSGLLMTNDVSGVN 839
Query: 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
LEEAVPCIALSKNDSYVMSATGGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA
Sbjct: 840 LEEAVPCIALSKNDSYVMSATGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 899
Query: 890 IGTEDSTIHIYNVRVDE--------------------------------LCVWSIDTWEK 917
IG EDSTIHIYNVRVDE LC+WSIDTWEK
Sbjct: 900 IGMEDSTIHIYNVRVDEVKSKLKGHQKRVTGLAFSTNLNILVSSGADAQLCIWSIDTWEK 959
Query: 918 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAP 977
RKSV I IPAGK+PTGDTRVQF++DQ R+LV+HETQLAIYDASKMERIRQW PQDA+SAP
Sbjct: 960 RKSVAIQIPAGKSPTGDTRVQFHSDQTRLLVIHETQLAIYDASKMERIRQWVPQDAVSAP 1019
Query: 978 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1037
IS A YSCNSQL++ATFCDGNIGVFDAD+LRLRC IAPS Y NGSQTVYPLVVA
Sbjct: 1020 ISYAAYSCNSQLIYATFCDGNIGVFDADSLRLRCRIAPSVY------NGSQTVYPLVVAT 1073
Query: 1038 HPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSR-TTSSSTSNHTPDQLQR 1096
HPL+PNQ A+GLTDGSVKV+EP+ESEGKWG SPPVDNG+LN R T+SS+TSNHT DQLQR
Sbjct: 1074 HPLDPNQLALGLTDGSVKVIEPTESEGKWGTSPPVDNGVLNGRTTSSSTTSNHTLDQLQR 1133
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576819|ref|XP_003556527.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1883 bits (4877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 903/1131 (79%), Positives = 997/1131 (88%), Gaps = 35/1131 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+QDKAKAV+ILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTPVNLP+AAVAKPA+Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTSLGAHGPFPP 240
Query: 241 TAAAANANALA-GWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQ 298
AAA GWMANASASSSVQAAVVTAS++PVPQNQV +LK PRTPP PGM+DYQ
Sbjct: 241 AAAATANANALAGWMANASASSSVQAAVVTASTMPVPQNQVPILKRPRTPPANPGMIDYQ 300
Query: 299 NPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
N DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTV ++LHQGS+V SMDFHPSH T
Sbjct: 301 NADHEQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHT 360
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLL GS+NGEI+LWEL++R++LVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDG
Sbjct: 361 LLLAGSNNGEISLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDG 420
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
++VG+AFTKHLI LY+Y G N+L Q ++DAHVG VNDL+FA+PNK +C+VTCGDDKLIK
Sbjct: 421 SFVGIAFTKHLIHLYAYTGPNELTQRIEVDAHVGGVNDLSFAHPNKQMCIVTCGDDKLIK 480
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L+GRKLF+FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPG
Sbjct: 481 VWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPG 540
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
HWCTTMLYSADG+RLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 HWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQN 600
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
FLA GED Q+KFWDMDN+N+L S+DA+GGL +LPRLRF+KEGN+LAVTT DNGFKILAN
Sbjct: 601 RFLAAGEDGQVKFWDMDNINLLISSDADGGLQSLPRLRFNKEGNILAVTTVDNGFKILAN 660
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718
A GLRSLR +E P FEALR+PIES +KV + S+ + +P NCKVERSSPVRPSPI+NGV
Sbjct: 661 ASGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCKVERSSPVRPSPILNGV 720
Query: 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778
DP RS +KPRTV+DV D+ KPWQL+EI+D QCR VTMPESTD+SSKVVRLLYTNSAVG
Sbjct: 721 DPMGRSAEKPRTVEDVIDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVVRLLYTNSAVG 780
Query: 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
+LALGSNG+QKLWKW R+EQNP+GKATA+ VP HW P++GLLM ND++GVNLEEAVPCIA
Sbjct: 781 ILALGSNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIA 840
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
LSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTIH
Sbjct: 841 LSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIH 900
Query: 899 IYNVRVDE--------------------------------LCVWSIDTWEKRKSVTIHIP 926
IYNVRVDE LCVWSIDTWEKRKS+ I +P
Sbjct: 901 IYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKSIPIQLP 960
Query: 927 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 986
AGK+P GDTRVQF++DQ+R+LVVHETQLAIYDASKMERIRQW PQD LSAPIS A YSCN
Sbjct: 961 AGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCN 1020
Query: 987 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1046
SQL++ATFCD NIGVFDAD+LRLRC IAPS LSP+ L+GSQ VYPLVVAAHPLEPNQFA
Sbjct: 1021 SQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLEPNQFA 1080
Query: 1047 IGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1096
+GLTDGSVKV+EP+ESEGKWG SPP+DNGILN R SSS TSNHT DQ QR
Sbjct: 1081 VGLTDGSVKVIEPNESEGKWGTSPPMDNGILNGRAGSSSTTSNHTADQAQR 1131
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511795|ref|XP_003626186.1| hypothetical protein MTR_7g112460 [Medicago truncatula] gi|355501201|gb|AES82404.1| hypothetical protein MTR_7g112460 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1882 bits (4876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1128 (81%), Positives = 996/1128 (88%), Gaps = 38/1128 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTARGIML+ELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFRDKLVFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGT--HSPF 238
WQHQLCKNPR NPDIKTLF DH+C+P NGPLAPTPVNLPVAAVAKPA+Y SLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHSCTPSNGPLAPTPVNLPVAAVAKPAAYTSLGVGAHGPF 240
Query: 239 PPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDY 297
PP AA ANANALAGWMANAS SSSVQAAVVTAS+IPVP NQVS+LK P TP T PGMV+Y
Sbjct: 241 PPAAATANANALAGWMANASVSSSVQAAVVTASTIPVPHNQVSILKRPITPSTTPGMVEY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLRPAPS EEV+Y S+R +WSLDDLPRTVA+SLHQGS+V SMDFHPSHQ
Sbjct: 301 QSADHEQLMKRLRPAPSVEEVSYPSARQASWSLDDLPRTVAMSLHQGSSVTSMDFHPSHQ 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLLLVGS+NGEI+LWEL MR+RLVSKPFKIWD++ACSLPFQA++ KD P SVSRV WS D
Sbjct: 361 TLLLVGSNNGEISLWELGMRERLVSKPFKIWDISACSLPFQAAVVKDTP-SVSRVTWSLD 419
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
G++VGVAFTKHLI +Y+Y GSN+L Q +IDAH+G VNDLAFA+PNK LCVVTCGDDKLI
Sbjct: 420 GSFVGVAFTKHLIHIYAYNGSNELAQRVEIDAHIGGVNDLAFAHPNKQLCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+L+GR+LFNFEGHEAPVYSICPHHKENIQFIFSTA+DGKIKAWLYD MGSRVDYDAP
Sbjct: 480 KVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
GHWCTTMLYSADG+RLFSCGTSKDGDSFLVEWNESEG IKRTY GFRKKS GVVQFDTTQ
Sbjct: 540 GHWCTTMLYSADGTRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQ 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLA GEDSQIKFWDMDNVN LTST+AEGGL LP LRF+KEGNLLAVTTADNGFKILA
Sbjct: 600 NRFLAAGEDSQIKFWDMDNVNPLTSTEAEGGLQGLPHLRFNKEGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717
NA GLRSLR VE P FEALR+PIES A KVS SSAV+ +P +CKVERSSP RPS I+NG
Sbjct: 660 NAGGLRSLRTVETPAFEALRSPIESAANKVSGSSAVNV-SPVSCKVERSSPARPSQILNG 718
Query: 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
VDP R+ +KPRTV+DV D+ K WQL EIVD CRLVTMP+STDTSSKVVRLLYTNS
Sbjct: 719 VDPAGRNAEKPRTVEDVMDRTKSWQLFEIVDPAHCRLVTMPDSTDTSSKVVRLLYTNSGA 778
Query: 778 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837
GLLALGSNGVQKLWKW RN+QNPSGKATAS VPQHW P+SGLLM NDV+GVNLEEAVPCI
Sbjct: 779 GLLALGSNGVQKLWKWSRNDQNPSGKATASVVPQHWQPNSGLLMTNDVSGVNLEEAVPCI 838
Query: 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
ALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM+PPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 839 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMAPPPASTFLAFHPQDNNIIAIGMEDSTI 898
Query: 898 HIYNVRVDE--------------------------------LCVWSIDTWEKRKSVTIHI 925
HIYNVRVDE LCVWSIDTWEKRKSV I +
Sbjct: 899 HIYNVRVDEVKSKLKGHQKRISGLAFSTNLGILVSSGADAHLCVWSIDTWEKRKSVPIQL 958
Query: 926 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 985
P GK P G+TRVQF++DQ+R+LV HETQLAIYDASKMERIRQW PQD LSAPIS A YSC
Sbjct: 959 PVGKAPVGETRVQFHSDQLRLLVSHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSC 1018
Query: 986 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1045
NSQL+FATFCDGN GVFDAD+LRLRC IAPSTY + + L+GSQ VYP VVAAHPLEPNQF
Sbjct: 1019 NSQLIFATFCDGNTGVFDADSLRLRCRIAPSTYFTATTLSGSQAVYPFVVAAHPLEPNQF 1078
Query: 1046 AIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTSNHTPDQ 1093
A+GLTDGSVKV+EP ESEGKWG SPP+DNG++N R +SSTSNHTPDQ
Sbjct: 1079 ALGLTDGSVKVIEPIESEGKWGSSPPMDNGMMNGR-AASSTSNHTPDQ 1125
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87162556|gb|ABD28351.1| Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1878 bits (4865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 901/1130 (79%), Positives = 994/1130 (87%), Gaps = 36/1130 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLL
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLI 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLF DHTCSP NGPLAPTPVNLP++AVAKP +Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVAYTSLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQN 299
A ANANALAGWMANASASSSVQAAVVT+S++PVPQNQVS+LK PRTPP TPG+VDYQN
Sbjct: 241 NVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRTPPATPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTVA++LHQGS+V S+DFHPSH TL
Sbjct: 301 TDHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSVTSLDFHPSHHTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGSSNGEITLWEL++R+RLVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDGN
Sbjct: 361 LLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGN 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VGVAFTKHLI LY+Y GSN+L Q ++DAHVG VNDL+FA PNK LC+VTCGDDKLIKV
Sbjct: 421 FVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+ +GR+LF FEGH+APVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKSNGVVQFDTTQN
Sbjct: 541 WCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSNGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FL GED Q+KFWDMDN+N+L STDA+GGL LPRL+F+KEGN+LAVTT DNGFKI+ANA
Sbjct: 601 FLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVTTVDNGFKIMANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
GLRSLR +E P FEALR+PIES ++KVS SS ++ +P NCKVERSSPVRP PI+NGVD
Sbjct: 661 TGLRSLRTIETPAFEALRSPIESTSIKVSGSS-TANVSPVNCKVERSSPVRPPPILNGVD 719
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
P SRS++K R V+D TD+ K WQL EI+D QCR VTMP++TD+ SKVVRLLYTNSAVG+
Sbjct: 720 PMSRSVEKSR-VEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKVVRLLYTNSAVGI 778
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
LALGSNGVQKLWKW RNEQNP+GKATAS VPQ W P+SGLLM ND+AGVNLEEAVPCIAL
Sbjct: 779 LALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAVPCIAL 838
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNII+IG EDSTIHI
Sbjct: 839 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIISIGMEDSTIHI 898
Query: 900 YNVRVDE--------------------------------LCVWSIDTWEKRKSVTIHIPA 927
YNVRVDE +CVWSIDTWEKRKS+ I +PA
Sbjct: 899 YNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQMCVWSIDTWEKRKSIPIQLPA 958
Query: 928 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 987
GK+P GDTRVQF++DQ+R+LVVHETQLAIYD SKMERIRQW PQDALSAPIS A YSCNS
Sbjct: 959 GKSPVGDTRVQFHSDQIRLLVVHETQLAIYDGSKMERIRQWIPQDALSAPISYAAYSCNS 1018
Query: 988 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1047
QL++A+FCD NIGVFDAD+LRLRC IAP LS + L+ SQ VYPLV+AAHPLEPNQFA+
Sbjct: 1019 QLIYASFCDANIGVFDADSLRLRCRIAPPICLSSAALSRSQAVYPLVIAAHPLEPNQFAV 1078
Query: 1048 GLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTS-SSTSNHTPDQLQR 1096
GL+DGSVKV+EPSESEGKWG SPP+DNGI+N + S S+TSNHT DQ QR
Sbjct: 1079 GLSDGSVKVIEPSESEGKWGSSPPMDNGIMNGKAPSPSTTSNHTADQAQR 1128
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535043|ref|XP_003536058.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1875 bits (4857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 906/1130 (80%), Positives = 999/1130 (88%), Gaps = 34/1130 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+QDKAKAV+ILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTP+NLP+AAVAKPA+Y LG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPINLPIAAVAKPATYTPLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
AA ANANALAGWMANASASSSVQAAVVTAS+IPVPQNQ PRTPP PGMVDYQN
Sbjct: 241 AAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQXXXXXRPRTPPANPGMVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DH+QLMKRLRP S EEV+Y +R +WSLDDLPRTV ++LHQGS+V SMDFHPSH TL
Sbjct: 301 ADHDQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGS+NGEITLWEL++R++LVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDG+
Sbjct: 361 LLVGSNNGEITLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGS 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VG+AFTKHLI LY+ GSN+L Q ++DAHVG VNDLAFA+PNK LC+VTCGDDKLIKV
Sbjct: 421 FVGIAFTKHLIHLYACTGSNELTQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+L+GRKLF+FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADG+RLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 WCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FLA GED Q+KFWDMDN+N+L ST+A+GGL +LPRLRF+KEGN+LAVTT DNGFKILANA
Sbjct: 601 FLAAGEDGQVKFWDMDNINLLISTEADGGLQSLPRLRFNKEGNILAVTTMDNGFKILANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
GLRSLR +E P FEALR+PIES +KV + S+ + +P NCKVERSSPVRPSPI+NGVD
Sbjct: 661 SGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCKVERSSPVRPSPILNGVD 720
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
P RS++KPRTV+DVTD+ KPWQL+EI+D QCR VTMPESTD+SSKV+RLLYTNSAVG+
Sbjct: 721 PMGRSVEKPRTVEDVTDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVIRLLYTNSAVGI 780
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
LALGSNG+QKLWKW R+E NP+GKATA+ VP HW P++GLLM ND++GVNLEEAVPCIAL
Sbjct: 781 LALGSNGIQKLWKWARSELNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIAL 840
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG +DSTIHI
Sbjct: 841 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMDDSTIHI 900
Query: 900 YNVRVDE--------------------------------LCVWSIDTWEKRKSVTIHIPA 927
YNVRVDE LCVWSIDTWEKRK++ I +PA
Sbjct: 901 YNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKAIPIQLPA 960
Query: 928 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 987
GK+P GDTRVQF++DQ+R+LVVHETQLAIYDASKMERIRQW PQD LSAPIS A YSCNS
Sbjct: 961 GKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCNS 1020
Query: 988 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1047
QL++ATFCD NIGVFDAD+LRLRC IAPS LSP+ L+GSQ VYPLVVAAHPLEPNQFA+
Sbjct: 1021 QLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLEPNQFAV 1080
Query: 1048 GLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1096
GLTDGSVKV+EP+ESEGKWG PP DNGILN RT SSS TSNHT DQ QR
Sbjct: 1081 GLTDGSVKVIEPNESEGKWGTCPPTDNGILNGRTGSSSTTSNHTADQAQR 1130
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441817|ref|XP_003591186.1| WD repeat-containing protein [Medicago truncatula] gi|355480234|gb|AES61437.1| WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1870 bits (4844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 901/1142 (78%), Positives = 994/1142 (87%), Gaps = 48/1142 (4%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLL
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLI 120
Query: 121 LSNF------------RENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKS 168
L+NF RENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKLAFPTLKS
Sbjct: 121 LNNFSMPTDLYFISYDRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKS 180
Query: 169 SRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPAS 228
SRLRTLINQSLNWQHQLCKNPR NPDIKTLF DHTCSP NGPLAPTPVNLP++AVAKP +
Sbjct: 181 SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVA 240
Query: 229 YASLGTHSPFPPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRT 288
Y SLG H PFPP A ANANALAGWMANASASSSVQAAVVT+S++PVPQNQVS+LK PRT
Sbjct: 241 YTSLGAHGPFPPNVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRT 300
Query: 289 PP-TPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTV 347
PP TPG+VDYQN DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTVA++LHQGS+V
Sbjct: 301 PPATPGIVDYQNTDHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSV 360
Query: 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407
S+DFHPSH TLLLVGSSNGEITLWEL++R+RLVSKPFKIWD++ACSLPFQA+ KD PI
Sbjct: 361 TSLDFHPSHHTLLLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPI 420
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SVSRV WSPDGN+VGVAFTKHLI LY+Y GSN+L Q ++DAHVG VNDL+FA PNK LC
Sbjct: 421 SVSRVTWSPDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLC 480
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
+VTCGDDKLIKVW+ +GR+LF FEGH+APVYSICPHHKENIQFIFSTAIDGKIKAWLYD
Sbjct: 481 IVTCGDDKLIKVWDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDN 540
Query: 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587
MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS
Sbjct: 541 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKS 600
Query: 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647
NGVVQFDTTQN FL GED Q+KFWDMDN+N+L STDA+GGL LPRL+F+KEGN+LAVT
Sbjct: 601 NGVVQFDTTQNRFLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVT 660
Query: 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707
T DNGFKI+ANA GLRSLR +E P FEALR+PIES ++KVS SS ++ +P NCKVERSS
Sbjct: 661 TVDNGFKIMANATGLRSLRTIETPAFEALRSPIESTSIKVSGSS-TANVSPVNCKVERSS 719
Query: 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767
PVRP PI+NGVDP SRS++K R V+D TD+ K WQL EI+D QCR VTMP++TD+ SKV
Sbjct: 720 PVRPPPILNGVDPMSRSVEKSR-VEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKV 778
Query: 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 827
VRLLYTNSAVG+LALGSNGVQKLWKW RNEQNP+GKATAS VPQ W P+SGLLM ND+AG
Sbjct: 779 VRLLYTNSAVGILALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAG 838
Query: 828 VNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNI 887
VNLEEAVPCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNI
Sbjct: 839 VNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNI 898
Query: 888 IAIGTEDSTIHIYNVRVDE--------------------------------LCVWSIDTW 915
I+IG EDSTIHIYNVRVDE +CVWSIDTW
Sbjct: 899 ISIGMEDSTIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQMCVWSIDTW 958
Query: 916 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALS 975
EKRKS+ I +PAGK+P GDTRVQF++DQ+R+LVVHETQLAIYD SKMERIRQW PQDALS
Sbjct: 959 EKRKSIPIQLPAGKSPVGDTRVQFHSDQIRLLVVHETQLAIYDGSKMERIRQWIPQDALS 1018
Query: 976 APISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1035
APIS A YSCNSQL++A+FCD NIGVFDAD+LRLRC IAP LS + L+ SQ VYPLV+
Sbjct: 1019 APISYAAYSCNSQLIYASFCDANIGVFDADSLRLRCRIAPPICLSSAALSRSQAVYPLVI 1078
Query: 1036 AAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTS-SSTSNHTPDQL 1094
AAHPLEPNQFA+GL+DGSVKV+EPSESEGKWG SPP+DNGI+N + S S+TSNHT DQ
Sbjct: 1079 AAHPLEPNQFAVGLSDGSVKVIEPSESEGKWGSSPPMDNGIMNGKAPSPSTTSNHTADQA 1138
Query: 1095 QR 1096
QR
Sbjct: 1139 QR 1140
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125092|ref|XP_002319498.1| predicted protein [Populus trichocarpa] gi|222857874|gb|EEE95421.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1867 bits (4835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 920/1131 (81%), Positives = 999/1131 (88%), Gaps = 42/1131 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVHKLEKESGF+FNMKYFEEKV AG+WDEVEKYL GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVLAGEWDEVEKYLVGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAV+ILV DLKVF TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFLTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IML+ELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLVELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCK+PR+NPDIKTLF DHTCSP NGPLAP PV+LPVAAVAKPA Y SLG H PFP
Sbjct: 181 WQHQLCKHPRSNPDIKTLFIDHTCSPTNGPLAPAPVSLPVAAVAKPAPYTSLGAHGPFPA 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
T AAANA ALAGWMANASASSSVQAAVVTASSIP+PQNQVSVLK RTPPT PG+VDYQN
Sbjct: 241 TGAAANAGALAGWMANASASSSVQAAVVTASSIPIPQNQVSVLKRQRTPPTAPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHE LMKRLRPA S EE TY +SR Q +WSL+DLPRTVA +LHQGSTV+SMDFHPSH T
Sbjct: 301 PDHE-LMKRLRPAQSVEEATYPASRQQASWSLEDLPRTVAFALHQGSTVMSMDFHPSHHT 359
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS NGEITLWEL R+RL SKPFKIWD+ CSL FQAS FKD ISV+RVAWSPDG
Sbjct: 360 LLLVGSVNGEITLWELISRERLFSKPFKIWDLQGCSLQFQASGFKDASISVTRVAWSPDG 419
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
N+VG AF KHLI LY+Y G NDLRQH +IDAHVG VNDLAFA+PNK LCVVTCGDDKLIK
Sbjct: 420 NFVGAAFNKHLIHLYAYNGPNDLRQHLEIDAHVGGVNDLAFAHPNKQLCVVTCGDDKLIK 479
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L+GRKLFNFEGHEA VY+ICPHHKENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 480 VWDLTGRKLFNFEGHEAAVYNICPHHKENIQFIFSTAIDGKIKAWLYDNIGSRVDYDAPG 539
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
HWCTTMLYSADGSRLFSCGTSK+GDS+LVEWNESEG++KR++ GFRKKS GVVQFDTTQN
Sbjct: 540 HWCTTMLYSADGSRLFSCGTSKEGDSYLVEWNESEGSVKRSFLGFRKKSAGVVQFDTTQN 599
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLA G+D QIKFWDM+N++ +T+TDA+GGL LPRL+F+KEGNLLAVTTADNGFKILAN
Sbjct: 600 HFLAAGDDGQIKFWDMENISFITTTDADGGLQTLPRLKFNKEGNLLAVTTADNGFKILAN 659
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718
A GLRSLRAVE FEALR+P+ES A+KVS +S + + +P N KVERSSPVRPSPI+NGV
Sbjct: 660 AAGLRSLRAVETHSFEALRSPMESAAIKVSGTSNIVNASPVNLKVERSSPVRPSPILNGV 719
Query: 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778
DP +RSM+KPRTVDDV DK KPWQLAEIVD G+CRLVT+P+STDTSSKVVRLLYTNS VG
Sbjct: 720 DPMNRSMEKPRTVDDVIDKTKPWQLAEIVDPGECRLVTLPDSTDTSSKVVRLLYTNSGVG 779
Query: 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
+LALG+NG+QKLWKW RNEQNPSGKATA+ VPQHW P+SGLLM NDV+GVNLEEAVPCIA
Sbjct: 780 MLALGANGIQKLWKWPRNEQNPSGKATANVVPQHWQPNSGLLMTNDVSGVNLEEAVPCIA 839
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
LSKNDSYVMSATGGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG EDSTIH
Sbjct: 840 LSKNDSYVMSATGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIH 899
Query: 899 IYNVRVDE--------------------------------LCVWSIDTWEKRKSVTIHIP 926
IYNVRVDE LC+WSIDTWEKRKSV I IP
Sbjct: 900 IYNVRVDEVKSKLKGHQKRVTGLAFSTNLNILVSSGADAQLCIWSIDTWEKRKSVAIQIP 959
Query: 927 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 986
GK+PTGDTRVQF++DQ R+LVVHETQLAIYDASKMERI QW PQDA+SAPIS A YSCN
Sbjct: 960 TGKSPTGDTRVQFHSDQTRLLVVHETQLAIYDASKMERIHQWVPQDAISAPISYAAYSCN 1019
Query: 987 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1046
SQL++ATF DGN+GVFDAD LRLRC IAPS Y NGSQT +PLVVA HPL+PNQ A
Sbjct: 1020 SQLIYATFSDGNVGVFDADHLRLRCRIAPSAY------NGSQTAHPLVVATHPLDPNQLA 1073
Query: 1047 IGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSR-TTSSSTSNHTPDQLQR 1096
+GLTDGSVKV+EP+ESE KWG SPPVDNG+LN R T+SS+TSNHTPDQLQR
Sbjct: 1074 VGLTDGSVKVIEPTESEKKWGTSPPVDNGVLNGRTTSSSTTSNHTPDQLQR 1124
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505795|ref|XP_003521675.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1860 bits (4818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 913/1131 (80%), Positives = 1000/1131 (88%), Gaps = 35/1131 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD QDKAKAV+ILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVGDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKL FPTL+SSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTPVNLPVAAVAKPA+Y S+G+H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGSHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
AA AN NALAGWMANASASSSVQAAVVTAS+IPVPQNQVS+LK PRTPPT PGM DYQN
Sbjct: 241 AAATANTNALAGWMANASASSSVQAAVVTASTIPVPQNQVSILKRPRTPPTTPGMADYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DHEQLMKRLRPAPS EEV+Y ++R + SLDDLPRTVA++LHQGS+V SMDFHPSH TL
Sbjct: 301 ADHEQLMKRLRPAPSVEEVSYPAARQASCSLDDLPRTVAMTLHQGSSVTSMDFHPSHPTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGS+NGEI+LWEL RDRLVSKPFKIWD++ACSLPFQA++ KD PIS SRV WS DGN
Sbjct: 361 LLVGSNNGEISLWELGFRDRLVSKPFKIWDISACSLPFQAAMVKDSPISASRVTWSLDGN 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VGVAFTKHLI LY+Y GSN+L Q ++DAH+G VNDLAFA+ NK LC+VTCGDDKLIKV
Sbjct: 421 FVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAHLNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+++GRKLFNFEGHEA VYSICPHHKE+IQF+FSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDIAGRKLFNFEGHEAAVYSICPHHKESIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 WCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FLA GED QIKFWDMDN+N+LTSTDAEGGL LP LRF+KEGNLLAVTTAD GFKILANA
Sbjct: 601 FLAAGEDGQIKFWDMDNINLLTSTDAEGGLQTLPHLRFNKEGNLLAVTTADKGFKILANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
GLRSLR VE P FEALR+PIES A+KV++ S+ + +P NCKVE+SSPV PSPI+NGVD
Sbjct: 661 NGLRSLRTVETPGFEALRSPIESAAVKVASGSSAVNVSPVNCKVEKSSPVGPSPILNGVD 720
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
T ++ +KPRTV+D D+ KPWQL+EIVD+ QCRLVTMP+STD+SSKVVRLLYTNS G+
Sbjct: 721 TTGQNAEKPRTVEDGVDRAKPWQLSEIVDAVQCRLVTMPDSTDSSSKVVRLLYTNSGAGV 780
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
LALGSNGVQKLWKW R+EQNP+GKATAS VPQHW P+SGLLM NDVAGVNL+EAVPCIAL
Sbjct: 781 LALGSNGVQKLWKWARSEQNPNGKATASVVPQHWQPNSGLLMTNDVAGVNLDEAVPCIAL 840
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTIHI
Sbjct: 841 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHI 900
Query: 900 YNVRVDE--------------------------------LCVWSIDTWEKRKSVTIHIPA 927
YNVRVDE LCVWSIDTWEKRKSV I +PA
Sbjct: 901 YNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQLCVWSIDTWEKRKSVPIQLPA 960
Query: 928 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 987
GK P GDTRVQF+ DQ+R+LV HETQLAIYDASKM+RIRQW PQD L+APIS A YSCNS
Sbjct: 961 GKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNS 1020
Query: 988 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLS-PSVLNGSQTVYPLVVAAHPLEPNQFA 1046
QL++ATFCDGN GVFDAD+LRLRC IA STY S P+ L+G+Q+ YP+ +AAHPLEPNQFA
Sbjct: 1021 QLIYATFCDGNTGVFDADSLRLRCRIALSTYFSPPAALSGNQSAYPVAIAAHPLEPNQFA 1080
Query: 1047 IGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1096
+GLTDGSVKV+EPSESEGKWG SPP+DNGILN R S+S TSN TPDQ QR
Sbjct: 1081 VGLTDGSVKVIEPSESEGKWGTSPPMDNGILNGRAASTSITSNLTPDQAQR 1131
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1096 | ||||||
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.822 | 0.796 | 0.726 | 0.0 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.814 | 0.789 | 0.628 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.805 | 0.788 | 0.632 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.155 | 0.229 | 0.374 | 6.8e-67 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.180 | 0.591 | 0.257 | 1.6e-12 | |
| DICTYBASE|DDB_G0278353 | 530 | smu1 "suppressor of mec-8 and | 0.255 | 0.528 | 0.242 | 1.4e-11 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.243 | 0.195 | 0.263 | 6.4e-10 | |
| FB|FBgn0040066 | 361 | wds "will die slowly" [Drosoph | 0.176 | 0.534 | 0.272 | 5.7e-11 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.176 | 0.626 | 0.258 | 9.9e-11 | |
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.176 | 0.577 | 0.258 | 1.4e-10 |
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3430 (1212.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 663/913 (72%), Positives = 745/913 (81%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHKLE+ESGFFFN+KYFEEK AG+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAV+IL DLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IM ELKKLIEANPLFR+KLAFP+ K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHS-PFP 239
WQHQLCKNPR NPDIKTLF DH+CSP NG A TPVNLPVAAVA+P+++ LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IPVPQNQVSVLKHPRTPPTP-GMVDY 297
P+ +QV+ LKHPR P G++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLR A ++ EVTY + H SLDDLPR V ++ QGS VISMDFHPSH
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHH 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLL VG S+GE+TLWE+ R+++V++PFKIW+MAACS+ FQ SI K+ ISV+RVAWSPD
Sbjct: 361 TLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPD 420
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN +GV+FTKHLI +Y+Y GS DLRQH +IDAHVG VNDLAFA+PNK +CVVTCGDDKLI
Sbjct: 421 GNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+LSG+KLF FEGHEAPVYSICPH KENIQFIFSTA+DGKIKAWLYD +GSRVDYDAP
Sbjct: 480 KVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
G WCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG +KRTY GFRKKS GVVQFDTT+
Sbjct: 540 GQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTR 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLAVGED+QIKFW+MDN N+LT +AEGGLPNLPRLRF+K+GNLLAVTTADNGFKILA
Sbjct: 600 NRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVER---SSPVRPSPI 714
N GLR+LRA E FEA + I+ +PA K+E SP RP+PI
Sbjct: 660 NTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSI---SPAIGKIEHMDAGSPARPTPI 716
Query: 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774
NG++ SR+M+KPR +D V DK KP +L EIVD QCR VTMP+S D+ SKV RLLYTN
Sbjct: 717 PNGIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTN 775
Query: 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 834
S VG+LALGSNGVQ+LWKW RNEQNP+GKATAS PQHW P+SGLLMANDV N E +V
Sbjct: 776 SGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE-NPEGSV 834
Query: 835 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894
PCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG ED
Sbjct: 835 PCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMED 894
Query: 895 STIHIYNVRVDEL 907
S+IHIYNVRVDE+
Sbjct: 895 SSIHIYNVRVDEV 907
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2969 (1050.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 581/925 (62%), Positives = 690/925 (74%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPV-AAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PPNG AP+PVN P+ + K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIP-VPQNQVSVLKHPRTPPTPGMVDYQ 298
PT P +P + LKHPRTPPT +DY
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIP----AALKHPRTPPTNASLDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH----QTWSLDDLPRTVAVSLHQGS 345
+ D E + KR RP ++EV ++S H + DDLP+TVA +L QGS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND++F+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV+TCGDDK IKVW+ + G K FEGHEAPVYS+CPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDYDAPG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD V +LT+ D +GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVE 704
AV+ +N KI+AN+ GLR L EN E+ + I T A +
Sbjct: 657 AVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAA-----TSAG-HAD 710
Query: 705 RSSPVRPSPIINGVDPTSRSM-D-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762
RS+ V I G++ SR+M D KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 711 RSANVVS---IQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLR 767
Query: 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822
+ K+ RL++TNS +LAL SN + LWKW RNE+N +GKATAS PQ W P+SG+LM
Sbjct: 768 VA-KISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMT 826
Query: 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882
NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHP
Sbjct: 827 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 886
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDEL 907
QDNNIIAIG +DSTI IYNVRVDE+
Sbjct: 887 QDNNIIAIGMDDSTIQIYNVRVDEV 911
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2953 (1044.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 584/924 (63%), Positives = 691/924 (74%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPV-AAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PN AP+PVN P+ ++ K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPVPQNQVSVLKHPRTPPTPGMVDYQN 299
PT P Q + LKHPRTPP+ VDY +
Sbjct: 241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQ---AALKHPRTPPSNSAVDYPS 297
Query: 300 PDHEQLMKRLRPAPSAEEV---------TYSSSRH---QTWSL-DDLPRTVAVSLHQGST 346
D + + KR RP ++EV T+ H QT+ DDLP+TVA +L QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
+SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND+AF+ PNK L
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 467 CVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
CV TCGDDK IKVW+ + G K + FEGHEAPVYSICPH+KENIQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585
D MGSRVDY+APG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645
+S GVVQFDTT+N +LA G+D IKFWDMD + +LT+ DA+GGL PR+RF+KEG+LLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVER 705
V+ DN K++AN+ GLR L VEN E+ + I P VER
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSI--------------PM---VER 700
Query: 706 SSPVRPSPIINGVDPTSRSM-D-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763
+ V P +NG D SR+M D KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 701 PASVVSIPGMNG-D--SRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRV 757
Query: 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823
+ K+ RL++TNS +LAL SN + LWKW RN++N +GKATAS PQ W P+SG+LM N
Sbjct: 758 T-KISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTN 816
Query: 824 DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883
DVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHPQ
Sbjct: 817 DVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 876
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEL 907
DNNIIAIG +DSTI IYNVRVDE+
Sbjct: 877 DNNIIAIGMDDSTIQIYNVRVDEV 900
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 6.8e-67, Sum P(3) = 6.8e-67
Identities = 64/171 (37%), Positives = 100/171 (58%)
Query: 6 RELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGFTKVDD 65
+ LVFLILQF +EE ++ES+H LE++SG FF+ Y + G+W + + YLS FT +
Sbjct: 9 KNLVFLILQFFDEEGYEESLHLLEQDSGVFFDFSYLSNAILNGNWKDADDYLSAFTSPEA 68
Query: 66 NRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFR 125
N +S K+FF + K K+ EA DR ++AV I DL+ ++ F ++ +++ + + R
Sbjct: 69 NTFSRKMFFGLFKLKFSEAPDRSGGSEAVKIFSKDLRRIPVLKDDSFDDLVEVIAVDDMR 128
Query: 126 ENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLIN 176
E+ D R + ++L KL E+NP R KL FP+L S L LI+
Sbjct: 129 IPEETCCV-DKAPGRAKLCVDLHKLAESNPSLRGKLDFPSLNKSALLALIS 178
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 54/210 (25%), Positives = 104/210 (49%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S V +SPDG ++ A I+++ G+ D + ++ H ++D+A++ +KL+C
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIW---GAYDGKFERTLEGHKEGISDIAWSQDSKLIC 104
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+ DDK IK+W++ SG+ + +GH+ V+ + + + N+ I S + D ++ W +
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDVN 160
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586
T A T + ++ DG+ + S G S DG + W+ + G + T + K
Sbjct: 161 TGECTKMISAHSDPVTGVHFNRDGTLVVS-G-SYDGTVRI--WDTTTGQLLNTISTEDGK 216
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616
V+F LA D+ ++ W +N
Sbjct: 217 EVSFVKFSPNGKFVLAGTLDNTLRLWSYNN 246
|
|
| DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 77/317 (24%), Positives = 131/317 (41%)
Query: 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI-FKDVPI 407
++ F P + LL GS +G I +W+ +SK SL +Q++ F
Sbjct: 230 TIKFSPDSK-YLLTGSMDGFIEVWDY--NTGKLSK----------SLAYQSNDDFMMHDD 276
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
++ +A+S DG ++ + I+++ LR+ AH V L F+ +
Sbjct: 277 AILCIAFSKDGEFLATGSLDNKIKVWQIKSGKCLRKFEP--AHTNGVTCLQFSRNSTQ-- 332
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+++ D +K+ L SG+ L F GH++ V C +H E+ + S + DGKIK W D
Sbjct: 333 ILSGSFDSSLKIHGLKSGKALKIFRGHQSFVNDCCFNHDEDR--VISCSSDGKIKIW--D 388
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--------GTIKR 578
S D T + + + S FL+ N S+ TI +
Sbjct: 389 AKSS----DCLQTITPTSVVTVRDISIRSITILLKNPEFLLVCNSSQISIVSMKSQTISK 444
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638
T+ K+ V QN+ AV ED+ + +D ++ ++L + +
Sbjct: 445 TFTSENSKTFLVCTLSPLQNYLYAVDEDNILYTFDFNSGSLLNKFKIHD--QEVISISHH 502
Query: 639 KEGNLLAVTTADNGFKI 655
NLLA T +D KI
Sbjct: 503 PTKNLLATTGSDCLLKI 519
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 76/288 (26%), Positives = 126/288 (43%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
K+W+ L FK + + VA+SPDG ++ + I+L+ A S +L+Q
Sbjct: 985 KLWNSTTGELQ---QTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLWDLATS-ELQQ-- 1038
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504
++ H +V+ +AF+ +K L + D IK+W+ +G EGH V S+
Sbjct: 1039 SLEDHSRSVHAVAFSPDDKQLASSSL--DSTIKLWDSATGELQRTLEGHSQGVRSVT--F 1094
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + + S + DG IK W T + W ++ +S DG +L S G DS
Sbjct: 1095 SPDGKLLASNSYDGTIKLWNPLTGELQQTLTGRSDWVDSVAFSPDGKQLAS-GYY---DS 1150
Query: 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTST 623
+ W+ + G + +T G + VV F + LA G D K WD +L
Sbjct: 1151 TIKLWDSATGELLQTLEGHSDRIQSVV-F-SPDGKLLASGSYDQTAKLWDPATGELLQIF 1208
Query: 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671
EG + + FS +G LLA ++ K+ G L+ + +P
Sbjct: 1209 --EGHSKWVESVAFSPDGKLLASSSYGETIKLWDPVTG-ELLQTLNDP 1253
|
|
| FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 184 (69.8 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 57/209 (27%), Positives = 98/209 (46%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ ++LL
Sbjct: 74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129
Query: 468 VVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +KVWELS G+ L +GH Y C + I S + D ++ W D
Sbjct: 130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 184
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG + W+ + G +T
Sbjct: 185 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDD 240
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 241 NPPVSFVKFSPNGKYILAATLDNTLKLWD 269
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 175 (66.7 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 54/209 (25%), Positives = 97/209 (46%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 468 VVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++S G+ L +GH Y C + I S + D ++ W D
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 131
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG + W+ + G +T
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDD 187
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWD 216
|
|
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 175 (66.7 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 54/209 (25%), Positives = 97/209 (46%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 468 VVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++S G+ L +GH Y C + I S + D ++ W D
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 157
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG + W+ + G +T
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDD 213
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWD 242
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LRZ0 | TPR2_ARATH | No assigned EC number | 0.7021 | 0.9936 | 0.9628 | no | no |
| Q84JM4 | TPR3_ARATH | No assigned EC number | 0.7442 | 0.9799 | 0.9693 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1096 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-31 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-15 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 1e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-05 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 2e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.002 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-31
Identities = 84/320 (26%), Positives = 125/320 (39%), Gaps = 46/320 (14%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V + F P + LL GS +G I K+WD+ L
Sbjct: 8 HTGG-VTCVAFSPDGK-LLATGSGDGTI----------------KVWDLETGELLRT--- 46
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
K V VA S DG Y+ + I+L+ +R + H V+ +AF+
Sbjct: 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG---HTSYVSSVAFS- 102
Query: 462 PNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520
P+ + + + DK IKVW++ +G+ L GH V S+ F+ S++ DG I
Sbjct: 103 PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG--TFVASSSQDGTI 159
Query: 521 KAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578
K W D + GH ++ +S DG +L S + DG L W+ S G
Sbjct: 160 KLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKL--WDLSTGKCLG 213
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN---VNILTSTDAEGGLPNLPRL 635
T G N V F + ED I+ WD+ V L+ L
Sbjct: 214 TLRGHENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT-----SL 267
Query: 636 RFSKEGNLLAVTTADNGFKI 655
+S +G LA +AD +I
Sbjct: 268 AWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-22
Identities = 61/239 (25%), Positives = 93/239 (38%), Gaps = 39/239 (16%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W L+ ++ H S V S+ F P + +L S + I K+
Sbjct: 78 WDLETGECVRTLTGHT-SYVSSVAFSPDGR-ILSSSSRDKTI----------------KV 119
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS-- 445
WD+ + + V+ VA+SPDG +V + I+L+ DLR
Sbjct: 120 WDVETGK---CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW------DLRTGKCV 170
Query: 446 -QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPH 503
+ H G VN +AF+ + L + D IK+W+LS K GHE V S+
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSK 560
+ + S + DG I+ W D GH T++ +S DG RL S
Sbjct: 229 PDGYL--LASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 62/270 (22%), Positives = 101/270 (37%), Gaps = 23/270 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ---HSQIDAHVGAVNDLAFAYPNK 464
V+ VA+SPDG + I+++ LR H+ V A D +
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY----- 65
Query: 465 LLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ + DK I++W+L +G + GH + V S+ + + + S++ D IK W
Sbjct: 66 ---LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVW 120
Query: 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583
D + GH + F +S+DG L W+ G T G
Sbjct: 121 --DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL--WDLRTGKCVATLTGH 176
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643
+ N V F L+ D IK WD+ L + N + FS +G L
Sbjct: 177 TGEVNSV-AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN--SVAFSPDGYL 233
Query: 644 LAVTTADNGFKI--LANAIGLRSLRAVENP 671
LA + D ++ L +++L N
Sbjct: 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNS 263
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.1 bits (222), Expect = 1e-18
Identities = 84/312 (26%), Positives = 134/312 (42%), Gaps = 30/312 (9%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
++ S+ F P + LLL GSS+G I LW+L ++L+ S+
Sbjct: 66 DSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLI-----------------KSLEGL 107
Query: 405 VPISVSRVAW-SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN 463
SVS++A SPDGN + +A + + + S + ++ H +V LAF P+
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPD 166
Query: 464 KLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522
L D IK+W+L +G+ L GH PV S+ + I S + DG I+
Sbjct: 167 GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRL 225
Query: 523 WLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKRTY 580
W T G + GH +S DGS L S D + W+ S ++ RT
Sbjct: 226 WDLST-GKLLRSTLSGHSDSVVSSFSPDGSLLASGS----SDGTIRLWDLRSSSSLLRTL 280
Query: 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640
+G V F + D ++ WD++ +L+S +G + L FS +
Sbjct: 281 SGHSSSVLS-VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339
Query: 641 GNLLAVTTADNG 652
G+LL +D+G
Sbjct: 340 GSLLVSGGSDDG 351
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-17
Identities = 55/220 (25%), Positives = 87/220 (39%), Gaps = 26/220 (11%)
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSI-- 500
+ H G V +AF+ KLL T D IKVW+L G L +GH PV +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLL--ATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGT 558
++ S + D I+ L+D GH + +++ +S DG L S
Sbjct: 60 SADGT----YLASGSSDKTIR--LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS- 112
Query: 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVG-EDSQIKFWDMD 615
D + W+ G T G ++ V V F F+A +D IK WD+
Sbjct: 113 ---RDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLR 165
Query: 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + G + + FS +G L +++D K+
Sbjct: 166 TGKCVAT--LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.1 bits (201), Expect = 4e-16
Identities = 81/344 (23%), Positives = 133/344 (38%), Gaps = 35/344 (10%)
Query: 289 PPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGST-- 346
TPG + H + + L +P + + SS T L DL +S G T
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
V S+ F P L+ GSS+G I LW+L+ L S
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL------------------RSTLSGHS 242
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
SV ++SPDG+ + + I+L+ S+ L + + H +V +AF+ KLL
Sbjct: 243 DSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT--LSGHSSSVLSVAFSPDGKLL 299
Query: 467 CVVTCGDDKLIKVWELSGRKL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ D +++W+L KL +GHE PV S+ + + + DG I+ W
Sbjct: 300 --ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDDGTIRLW 356
Query: 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583
T + ++ +S DG + S T D + W+ S G++ R G
Sbjct: 357 DLRTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGST----DGTVRLWDLSTGSLLRNLDGH 411
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
+ + F + D+ I+ WD+ S +G
Sbjct: 412 TSRVT-SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.2 bits (191), Expect = 8e-15
Identities = 74/329 (22%), Positives = 123/329 (37%), Gaps = 38/329 (11%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W L + + +V S+ F P + L S +G I LW+L L
Sbjct: 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL------- 191
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQ 446
S VS +A+SPDG + + I+L+ S S
Sbjct: 192 ------------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL--STGKLLRST 237
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL--SGRKLFNFEGHEAPVYSICPHH 504
+ H +V +F+ LL + D I++W+L S L GH + V S+
Sbjct: 238 LSGHSDSV-VSSFSPDGSLL--ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDG 562
+ + S + DG ++ W +T GH +++ +S DGS L S G+
Sbjct: 295 DGKL--LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD--- 349
Query: 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622
D + W+ G +T + V F + D ++ WD+ ++L +
Sbjct: 350 DGTIRLWDLRTGKPLKTL--EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN 407
Query: 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADN 651
D + L FS +G LA ++DN
Sbjct: 408 LDGHTSR--VTSLDFSPDGKSLASGSSDN 434
|
Length = 466 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-14
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 34 FFFNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQD 89
F K E + GDWDE ++LS R S K+ FE+RKQK+LE + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGK 55
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 30/185 (16%)
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQT--WSLDDLPRTVAV-SLHQGSTVISMDFHPSH 356
H + + +P V SS W L + VA + H G V S+ F P
Sbjct: 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLTGHTGE-VNSVAFSPD- 188
Query: 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416
LL SS+G I LW+L+ +L + V+ VA+SP
Sbjct: 189 GEKLLSSSSDGTIKLWDLST------------GKCLGTLRGHEN-------GVNSVAFSP 229
Query: 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
DG + I+++ + H +V LA++ + + D
Sbjct: 230 DGYLLASGSEDGTIRVWD---LRTGECVQTLSGHTNSVTSLAWS--PDGKRLASGSADGT 284
Query: 477 IKVWE 481
I++W+
Sbjct: 285 IRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.7 bits (117), Expect = 7e-06
Identities = 45/258 (17%), Positives = 96/258 (37%), Gaps = 22/258 (8%)
Query: 831 EEAVPCIALSKNDSYVMSATG--GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888
E+V +A S + + S + G I L+++ T K ++T + LAF P +I
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214
Query: 889 AIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 948
A G+ D TI ++++ +L ++ + P G ++D
Sbjct: 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS------PDGSLLASGSSDG----- 263
Query: 949 VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1008
+ ++D + + S+ + +S + +L+ + DG + ++D +T +
Sbjct: 264 ----TIRLWDLRSSSSLLRTLSGH--SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317
Query: 1009 LRCYIAPSTYLSP-SVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWG 1067
L + + P S L+ S LV + + +
Sbjct: 318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS--DDGTIRLWDLRTGKPLKTLEGHSNVLS 375
Query: 1068 VSPPVDNGILNSRTTSSS 1085
VS D +++S +T +
Sbjct: 376 VSFSPDGRVVSSGSTDGT 393
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 1e-05
Identities = 80/444 (18%), Positives = 148/444 (33%), Gaps = 49/444 (11%)
Query: 473 DDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV 532
D L+ + +LS GHE + SI + + + S + DG IK W D +
Sbjct: 47 SDSLVSLPDLSSLL---LRGHEDSITSIA--FSPDGELLLSGSSDGTIKLWDLDNGEKLI 101
Query: 533 D--YDAPGHWCTTMLY-SADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKRTYAGFRKKSN 588
+ + S DG+ + +S DG L W+ + G + RT G +
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL--WDLSTPGKLIRTLEGHSESVT 159
Query: 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648
+ + D IK WD+ L++ + L FS +G LL +
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS--SLAFSPDGGLLIASG 217
Query: 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708
+ +G ++R + + LR+ + ++ V SP
Sbjct: 218 SSDG-----------TIRLWDLSTGKLLRSTLSG---------------HSDSVVSSFSP 251
Query: 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ--LAEIVDSGQCRLVTMPESTDTSSK 766
D T R D + + L+ L + S+D + +
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG--SSDGTVR 309
Query: 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA 826
+ L L G G + + + + W +G +
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369
Query: 827 GVNLEEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 885
N V ++ S + V S + G + L+++ T ++ T L F P D
Sbjct: 370 HSN----VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DG 424
Query: 886 NIIAIGTEDSTIHIYNVRVDELCV 909
+A G+ D+TI +++++ V
Sbjct: 425 KSLASGSSDNTIRLWDLKTSLKSV 448
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 39/230 (16%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
V +A S + + S++ I ++++ T K +TT +AF P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 890 IGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGD-TRVQFNADQVRMLV 948
++D TI + W + T + ++T H TG+ V F+ D ++L
Sbjct: 152 SSSQDGTIKL----------WDLRTGKCVATLTGH-------TGEVNSVAFSPDGEKLLS 194
Query: 949 -VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1007
+ + ++D S + + + ++ +S + L+ + DG I V+D T
Sbjct: 195 SSSDGTIKLWDLSTGKCLGTLRGHEN---GVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251
Query: 1008 RLRCYIAPSTYLSPSVLNGSQT-VYPLVVAAHPLEPNQFAIGLTDGSVKV 1056
L+G V +A P + + A G DG++++
Sbjct: 252 ECV-----------QTLSGHTNSVT--SLAWSP-DGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLEEEKFKESVHKLEKESGF 34
EL LIL++L ++E+ L+KESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 53/263 (20%), Positives = 99/263 (37%), Gaps = 55/263 (20%)
Query: 834 VPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892
V C+A S + + + +G G I ++++ T +++ T +A D +A G+
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70
Query: 893 EDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTR-VQFNADQVRMLVVHE 951
D TI +W ++T E +++T H T V F+ D R+L
Sbjct: 71 SDKTI----------RLWDLETGECVRTLTGH-------TSYVSSVAFSPDG-RILSS-- 110
Query: 952 TQLAIYDASKMERIRQW-----TPQDAL---SAPISCAVYSCNSQLVFATFCDGNIGVFD 1003
+ D + I+ W L + ++ +S + V ++ DG I ++D
Sbjct: 111 ---SSRDKT----IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163
Query: 1004 ADTLRLRCYIAPSTYLSPSVLNGSQ-TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1062
T + + L G V VA P + + +DG++K+ + S
Sbjct: 164 LRTGKCV-----------ATLTGHTGEVN--SVAFSP-DGEKLLSSSSDGTIKLWDL--S 207
Query: 1063 EGKWGVSPPVDNGILNSRTTSSS 1085
GK + +NS S
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPD 230
|
Length = 289 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480
+ H G V +AF+ LL + DD ++VW
Sbjct: 7 LKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVW 38
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1096 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.84 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.81 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.81 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.8 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.79 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.78 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.78 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.77 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.77 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.71 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.71 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.7 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.7 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.69 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.69 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.68 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.67 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.66 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.66 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.64 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.61 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.61 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.61 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.6 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.6 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.59 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.59 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.58 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.56 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.55 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.55 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.54 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.53 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.52 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.51 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.5 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.5 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.49 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.48 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.47 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.46 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.45 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.44 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.44 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.37 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.36 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.32 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.31 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.3 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.3 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.3 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.3 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.29 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.29 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.27 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.26 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.26 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.25 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.25 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.24 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.24 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.21 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.21 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.2 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.19 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.18 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.17 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.09 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.06 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.01 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.0 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.99 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.99 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.95 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.92 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.92 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.89 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.86 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.84 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.84 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.81 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.81 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.81 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.8 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.78 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.76 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.72 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.72 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.7 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.69 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.66 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.66 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.6 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.6 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.6 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.59 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.58 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.57 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.57 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.57 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.55 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.53 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.51 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.5 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.49 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.48 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.48 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.45 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.4 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.35 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.34 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.33 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.32 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.31 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.3 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.3 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.29 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.27 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.26 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.25 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.24 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.24 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.2 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.19 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.18 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.17 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.15 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.11 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.01 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.01 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 97.99 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.98 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.96 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.94 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.91 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.89 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.88 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.88 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.85 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.82 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.79 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.78 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.77 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.73 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.71 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.63 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.59 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.54 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.54 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.49 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.48 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.45 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.44 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.44 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.42 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.42 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.36 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.34 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.31 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.27 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.25 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.25 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.23 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.2 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.15 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.14 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.12 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.05 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.98 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.92 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 96.8 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.78 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 96.71 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 96.71 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.64 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.62 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.57 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.5 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.45 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.4 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.26 | |
| PRK10115 | 686 | protease 2; Provisional | 96.24 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.18 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.17 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.16 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.13 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.1 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.05 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.93 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.89 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.86 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.86 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.85 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 95.82 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.77 | |
| PRK10115 | 686 | protease 2; Provisional | 95.77 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.72 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.67 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.54 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.48 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.47 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.44 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.43 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.43 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.88 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.82 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.69 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.62 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.59 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.53 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.29 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.06 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.88 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 93.8 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.72 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.71 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.65 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.57 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.55 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.55 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.42 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.25 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.89 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 92.45 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.1 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.03 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 91.76 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.12 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.05 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.99 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.95 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.78 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.76 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 90.62 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 90.35 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.32 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 89.61 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 89.59 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 89.31 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.99 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 88.98 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 88.97 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 88.72 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 88.63 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 88.23 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.02 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 87.67 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.59 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 87.27 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 87.17 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 86.53 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 86.3 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 85.91 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 85.88 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 85.79 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 85.75 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 85.57 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 84.94 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 84.77 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 84.27 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 84.18 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 84.15 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 84.08 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 83.34 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 83.24 | |
| smart00757 | 99 | CRA CT11-RanBPM. protein-protein interaction domai | 83.12 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 82.8 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 82.69 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 82.66 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 82.64 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 82.48 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 81.88 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 81.57 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 81.46 | |
| PF09862 | 113 | DUF2089: Protein of unknown function (DUF2089); In | 81.41 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 81.27 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 80.63 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-70 Score=539.08 Aligned_cols=489 Identities=22% Similarity=0.317 Sum_probs=415.3
Q ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHhhCCCcc---HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHH
Q 001343 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN---MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1096)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 81 (1096)
+.|++||+.|+|+.+||.+|+.+||.|+|+... ...|.++|+.|+|+.++..+..+ .++++....++.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 78999999999999999999887 34444445569999999999
Q ss_pred HHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCcc-chhhhcccCCchHHHHHHHHHHHhhcccCcccccc
Q 001343 82 LEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFR-ENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDK 160 (1096)
Q Consensus 82 lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~ 160 (1096)
||++..|....|+.+||++..++ .++.+++++|+..+..++.- .++. ..-......|.+|+++|++.|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~-~~~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEE-NTTAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhcccccccccc-chhhhhchhHHHHHHHHHhhCCHhhc----
Confidence 99999999999999999999888 45889999999877665432 2332 11122567899999999999999998
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCcCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 001343 161 LAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240 (1096)
Q Consensus 161 ~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~f~~ 240 (1096)
+|++||++||+||++||+.+|.|||+ .+..|||.||.|++.+ +|. .+
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~~q--------------ip~-qt------------ 216 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGRLQ--------------IPS-QT------------ 216 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCccc--------------CCc-hh------------
Confidence 99999999999999999999999995 6669999999999955 553 01
Q ss_pred CccccchhhhhhhhhcCCCCcccccccccCCCCCCCCCccccccCCCCCCCCceeecCCccHHHHHhhcCCCCCCCceee
Q 001343 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTY 320 (1096)
Q Consensus 241 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 320 (1096)
T Consensus 217 -------------------------------------------------------------------------------- 216 (519)
T KOG0293|consen 217 -------------------------------------------------------------------------------- 216 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceeeecCCCCcceEEee-cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccc
Q 001343 321 SSSRHQTWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQA 399 (1096)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l-~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1096)
.+++ .|+++|+-+.||++|+ +||+|+.|.+..||++.....+. ..
T Consensus 217 -----------------~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k----------------l~ 262 (519)
T KOG0293|consen 217 -----------------WQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK----------------LK 262 (519)
T ss_pred -----------------hhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee----------------ee
Confidence 1122 3788999999999999 69999999999999987654321 11
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
+.+.+|..+|..+.||||.+||++|+.|..+++||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIM 338 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEE
Confidence 3488999999999999999999999999999999999998776432 24678999999999999 8999999999999
Q ss_pred EEcCCceEEEeeCCCC-CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WELSGRKLFNFEGHEA-PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
||.+|+.+..+++-.. .|.+++..+ ||+++++.+.|..|++++.++..... +.....+|+++++|.|++++++.-.
T Consensus 339 wdlDgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 339 WDLDGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred ecCCcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc
Confidence 9999999988887654 488999865 78999999999999999988765553 3344568999999999999998876
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccc-eEEEEEeC-CCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKS-NGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
+..+.+||++..+.++.+.||.... +-.-||.. +..++++|++|+.|+||+..+++++..+.+|.. .|++++
T Consensus 416 ----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVs 489 (519)
T KOG0293|consen 416 ----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVS 489 (519)
T ss_pred ----cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEe
Confidence 8899999999999999999997742 22234543 558999999999999999999999999999876 899999
Q ss_pred EeC-CCCEEEEEECCCcEEEEEcCC
Q 001343 637 FSK-EGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 637 ~s~-~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
|+| +..++|++++||+|+||-...
T Consensus 490 wNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEecCCc
Confidence 999 668999999999999998753
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=475.78 Aligned_cols=486 Identities=21% Similarity=0.346 Sum_probs=405.0
Q ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHhhCCCcc----HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHH
Q 001343 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1096)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 80 (1096)
+.|+||||+|||+|+.++++.++||+|++++++ ++.|-+.|.+|+||.++..+++| .+|+. -+..||+|.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHH
Confidence 458999999999999999999999999999998 78999999999999999999999 44444 688999999
Q ss_pred HHHhhccCCHHHHHHHHHhh--cccccccCHHHHHHHHHHhcccCccchhhhcccCCchHHHHHHHHHHHhhcccCcccc
Q 001343 81 YLEALDRQDKAKAVDILVND--LKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFR 158 (1096)
Q Consensus 81 ~lell~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~ 158 (1096)
.|||||.+++..|+.+||+- +..++..+|++|.+|+.|+..++|++++.+.+ ...++.|..+++.|...+..
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999974 44456779999999999999999999998764 23445556777777665554
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCcCCCCCCccccCCCCCCCCCCCCCCCC
Q 001343 159 DKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPF 238 (1096)
Q Consensus 159 ~~~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~f 238 (1096)
+||+||+.||+||++||+.+ +++|++.+++ .|
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQ-----------------------------------GLLPPGt~iD------LF 186 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQ-----------------------------------GLLPPGTTID------LF 186 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhc-----------------------------------CCCCCCceee------ec
Confidence 99999999999999999875 5688877775 67
Q ss_pred CCCccccchhhhhhhhhcCCCCcccccccccCCCCCCCCCccccccCCCCCCCCceeecCCccHHHHHhhcCCCCCCCce
Q 001343 239 PPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEV 318 (1096)
Q Consensus 239 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 318 (1096)
++.+. ++ ..+.+.
T Consensus 187 RGkAA---------------------------------------~K--------------~~~Ee~-------------- 199 (508)
T KOG0275|consen 187 RGKAA---------------------------------------MK--------------DQEEER-------------- 199 (508)
T ss_pred cchhh---------------------------------------hh--------------hhHhhh--------------
Confidence 76521 11 000000
Q ss_pred eecCCCceeeecCCCCcceE--EeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcc
Q 001343 319 TYSSSRHQTWSLDDLPRTVA--VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP 396 (1096)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~--~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 396 (1096)
.|..+. ..++.++.+.|..|||||+ +|++|+.||.|.|||+.+|+.....+
T Consensus 200 --------------~Pt~l~r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLk------------ 252 (508)
T KOG0275|consen 200 --------------YPTQLARSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLK------------ 252 (508)
T ss_pred --------------chHHhhhheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhh------------
Confidence 011111 2234667899999999999 69999999999999999998765422
Q ss_pred ccc-cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 397 FQA-SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 397 ~~~-~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
|+. ..+.-+..+|.|+.||.|...||+|+.||.|+||.+.+|.|++.+. .+|...|+|+.|+.|+. .+++++.|.
T Consensus 253 YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~ 328 (508)
T KOG0275|consen 253 YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQ 328 (508)
T ss_pred hhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccc
Confidence 221 2356688999999999999999999999999999999999998532 38999999999999999 799999999
Q ss_pred cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC--cEEEEEEcCCC-C
Q 001343 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADG-S 551 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~-~ 551 (1096)
++++.- .+|++++.++||.+.|+...|.+ +|..+++++.||+|++|+..+.++..++...+. +|.++..-|.. .
T Consensus 329 tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 329 TVRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred eEEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 999999 99999999999999999999965 789999999999999999999999887765443 77887777644 5
Q ss_pred EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC--ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
.+++|.. .+++++.++. |+.+++|.... +...-+++.+|.|.++++.++|+.++.|...+|.+..++..|..
T Consensus 407 h~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk- 480 (508)
T KOG0275|consen 407 HFIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK- 480 (508)
T ss_pred eEEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc-
Confidence 6777765 7889999875 67777775432 22445578899999999999999999999999999999988876
Q ss_pred CCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 630 PNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
.|..++-+|..+.+|+-+.||.+++|.
T Consensus 481 -dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 -DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -cccccccCcccchhhhhcccchhhhcC
Confidence 789999999999999999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-58 Score=485.58 Aligned_cols=577 Identities=19% Similarity=0.267 Sum_probs=485.6
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEecCCCCee-ecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCC
Q 001343 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1096)
Q Consensus 350 v~fsp~g~~llasg~~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg 428 (1096)
++|+++|+ +|++.. ...|.+-|+.+++.. .. .-..-...+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 688763 456888899998873 21 1233566899999999999999999999
Q ss_pred eEEEEEccCCCccccceeecc-cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecC
Q 001343 429 LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE 506 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~ 506 (1096)
.+++|++.+++.++ .++. |.++|.-++|+|.+. .+++|+.|+.+++|| ..+.+...|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998887 4665 999999999999997 999999999999999 8999999999999999999999988
Q ss_pred CCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc
Q 001343 507 NIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585 (1096)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 585 (1096)
+...|++|..|+++++||++.... ...+..|.+.|++++|++|+..+++++. |..+.+||+.+.+..+++....
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 878899999999999999995544 6678889999999999999999999997 9999999998887777776654
Q ss_pred cceEEEEEeCC-----CCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 586 KSNGVVQFDTT-----QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 586 ~~i~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.+.++.+-++ +.+++++|++|.+++||..+++.+........ ..+..+...+....++..+.|..+.++|..+
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 4566666666 67999999999999999999988776655432 2467777777667777888899999999888
Q ss_pred CccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccc
Q 001343 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKP 740 (1096)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~i 740 (1096)
. +..+.+.++.+++. .+.| +-|+...+|.++..+.+|+
T Consensus 313 l-~i~k~ivG~ndEI~-----Dm~~------------------------------------lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEIL-----DMKF------------------------------------LGPEESHLAVATNSPELRL 350 (775)
T ss_pred c-EEehhhcCCchhhe-----eeee------------------------------------cCCccceEEEEeCCCceEE
Confidence 7 77888888877644 3333 1344556677777789999
Q ss_pred eeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcccc
Q 001343 741 WQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (1096)
Q Consensus 741 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~ 820 (1096)
|+.. +..|. .++| |...|.++....+|-.|++++.|.++++|.++.+. ....+
T Consensus 351 y~~~----~~~c~--ii~G---H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~------------------~~~~~ 403 (775)
T KOG0319|consen 351 YTLP----TSYCQ--IIPG---HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC------------------SKSLC 403 (775)
T ss_pred EecC----CCceE--EEeC---chhheeeeeecccCcEEEEecCCceEEEEEecCCc------------------chhhh
Confidence 9876 56666 4667 99999999977788788999999999999983211 11112
Q ss_pred ccccccCCCcCCCeeeeeecCCC-cEEEEec-CCeEEEEEcccceE---------EEeecCCCCCeeEEEEecCCCcEEE
Q 001343 821 MANDVAGVNLEEAVPCIALSKND-SYVMSAT-GGKISLFNMMTFKV---------MTTFMSPPPASTFLAFHPQDNNIIA 889 (1096)
Q Consensus 821 ~~~~~~g~~~~~~v~~l~~s~dg-~~la~~~-dg~v~iwd~~~~~~---------~~~~~~h~~~i~~l~~s~~d~~~l~ 889 (1096)
+. ...| |...|.+++++..+ .+|++++ |.++++|++...+. ..+...|...|++++++| +.++++
T Consensus 404 ~a-~~~g--H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiA 479 (775)
T KOG0319|consen 404 VA-QANG--HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIA 479 (775)
T ss_pred hh-hhcc--cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEE
Confidence 22 3444 99999999998877 7889998 89999999965211 113458999999999999 899999
Q ss_pred EeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceecccc
Q 001343 890 IGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQW 968 (1096)
Q Consensus 890 s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~ 968 (1096)
||+.|++.+||+++... .+.++.||.. .+.+|.|+|..+.+++ +.|.+|+||.+++..|++++
T Consensus 480 T~SqDktaKiW~le~~~---------------l~~vLsGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~ 543 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLR---------------LLGVLSGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF 543 (775)
T ss_pred ecccccceeeecccCce---------------EEEEeeCCcc-ceEEEEeccccceeEeccCCceEEEEEeccceeeeee
Confidence 99999999999999766 6779999998 9999999999999999 89999999999999999999
Q ss_pred ccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEE
Q 001343 969 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1048 (1096)
Q Consensus 969 ~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~ 1048 (1096)
.+| ...|..+.|-.+|+.|++++.||-|++|++.++++.+.+. + |.+.|| +++-+| ...+++||
T Consensus 544 eGH---~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~---H~DrvW--aL~~~~-~~~~~~tg 607 (775)
T KOG0319|consen 544 EGH---TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------A---HNDRVW--ALSVSP-LLDMFVTG 607 (775)
T ss_pred cCc---cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------h---ccceeE--EEeecC-ccceeEec
Confidence 987 9999999999999999999999999999999999877655 3 999999 589998 88899999
Q ss_pred eeCCcEEEEccCCCC
Q 001343 1049 LTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1049 ~~dg~i~vW~v~~~~ 1063 (1096)
+.||.|.+|.=.+.+
T Consensus 608 g~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 608 GGDGRIIFWKDVTEE 622 (775)
T ss_pred CCCeEEEEeecCcHH
Confidence 999999999866644
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=473.81 Aligned_cols=564 Identities=13% Similarity=0.212 Sum_probs=460.4
Q ss_pred eeecCCCCcce-EEeec--CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 327 TWSLDDLPRTV-AVSLH--QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 327 ~~~~~~~~~~~-~~~l~--h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
+...+..++.. +.... ..+.+++++.+||+. +|++++....+++|++.+|+.++. .+
T Consensus 42 Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs-------------------wK 101 (775)
T KOG0319|consen 42 VIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS-------------------WK 101 (775)
T ss_pred EEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh-------------------Hh
Confidence 44455555555 33322 567899999999998 699999999999999999987753 34
Q ss_pred c-CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-
Q 001343 404 D-VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 404 ~-h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
. |+++|.-++|+|.|..|++|+.|+.|+|||+..+.+.. .|.||.+.|..+.|.|+-.+..|++|+.|+++++||
T Consensus 102 a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl 178 (775)
T KOG0319|consen 102 AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNL 178 (775)
T ss_pred hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEc
Confidence 4 99999999999999999999999999999999988877 689999999999999988765799999999999999
Q ss_pred cCC-ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC-----CCEEEE
Q 001343 482 LSG-RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFS 555 (1096)
Q Consensus 482 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-----~~~l~~ 555 (1096)
.+. .++..+..|.+.|+++++.+ |+..+++++.|..|.+||+...+......... .+-++.+-++ |.++++
T Consensus 179 ~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye-~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 179 NDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE-SLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred ccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechhh-heeeEEEechhcCCcceEEEE
Confidence 534 35888899999999999976 67899999999999999997666555544332 4666666666 668888
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
.+. ++.+++||.++++++..........+..+...+....++..+.|..+.+||.++.++...+.+... .|.++
T Consensus 256 aG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd--EI~Dm 329 (775)
T KOG0319|consen 256 AGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND--EILDM 329 (775)
T ss_pred ecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch--hheee
Confidence 886 999999999999887665544333455566666666777888889999999999999988887765 88888
Q ss_pred EE-eCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCc
Q 001343 636 RF-SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1096)
Q Consensus 636 ~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~ 714 (1096)
.| .|+.++||+++..+.+++|+..+.. ...+.+|... |.++..
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~--c~ii~GH~e~-----vlSL~~----------------------------- 373 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSY--CQIIPGHTEA-----VLSLDV----------------------------- 373 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCc--eEEEeCchhh-----eeeeee-----------------------------
Confidence 87 4577999999999999999887762 2366777554 223332
Q ss_pred ccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCc-eEEEeecCCeEEEeec
Q 001343 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKW 793 (1096)
Q Consensus 715 ~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~v~vw~~ 793 (1096)
..+|-++++++.|.++++|.+++ +.+....+....+|.+.|.+++++..+. .|++++.|.++++|++
T Consensus 374 --------~~~g~llat~sKD~svilWr~~~----~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 374 --------WSSGDLLATGSKDKSVILWRLNN----NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred --------cccCcEEEEecCCceEEEEEecC----CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 12345779999999999999953 2222222222244999999999987664 5677778999999999
Q ss_pred cCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCC
Q 001343 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPP 872 (1096)
Q Consensus 794 ~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~ 872 (1096)
+....... ...+...+....|...|+|++++|+++++|||+ |.+.+||++..+....++.+|.
T Consensus 442 ~~s~~~~~----------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~ 505 (775)
T KOG0319|consen 442 PKSKETAF----------------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT 505 (775)
T ss_pred CCcccccc----------------cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc
Confidence 76211000 000100111124999999999999999999999 7889999999999999999999
Q ss_pred CCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eec
Q 001343 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE 951 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d 951 (1096)
..|+++.|+| ..+.++|++.|++|+||.+++.+ |+++++||.. .|..+.|-.+|+.|++ +.|
T Consensus 506 RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fS---------------ClkT~eGH~~-aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 506 RGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFS---------------CLKTFEGHTS-AVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred cceEEEEecc-ccceeEeccCCceEEEEEeccce---------------eeeeecCccc-eeEeeeeeeCCcEEEeccCC
Confidence 9999999999 89999999999999999999998 8899999998 9999999999999999 899
Q ss_pred ceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCC
Q 001343 952 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 952 ~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~ 1006 (1096)
|.+++|++++++|+.++..| ++.|++++.++++.++++|+.||.|.+|.=.+
T Consensus 569 GliKlWnikt~eC~~tlD~H---~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTLDAH---NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEEeccchhhhhhhhhc---cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999999999999999886 99999999999999999999999999998544
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=414.30 Aligned_cols=561 Identities=16% Similarity=0.255 Sum_probs=440.2
Q ss_pred CCCceeecCCCce-eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccc
Q 001343 314 SAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAA 392 (1096)
Q Consensus 314 ~~~~v~~~~~~~~-~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 392 (1096)
..+.+.|+.+..- +..++.+.. +..-.+|...|+-..|||.|- ++|+|...|+|+|||....+.+...+
T Consensus 29 kgd~ilY~nGksv~ir~i~~~~~-~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne-------- 98 (603)
T KOG0318|consen 29 KGDNILYTNGKSVIIRNIDNPAS-VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE-------- 98 (603)
T ss_pred CCCeEEEeCCCEEEEEECCCccc-eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee--------
Confidence 3556777766544 444444433 333345899999999999998 79999999999999998755553322
Q ss_pred cCccccccccccCCCCEEEEEEcCCCCEEEEEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEE
Q 001343 393 CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468 (1096)
Q Consensus 393 ~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l 468 (1096)
+.--.++|..|+|++|++.|++.+.. |.+.+|| +|..+. ++.||...|+++.|-|.... .+
T Consensus 99 ---------f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri 163 (603)
T KOG0318|consen 99 ---------FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RI 163 (603)
T ss_pred ---------eeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EE
Confidence 33356799999999999999877653 3455565 554455 68899999999999998876 89
Q ss_pred EEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe---CCCCcEEEE
Q 001343 469 VTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTM 544 (1096)
Q Consensus 469 ~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l 544 (1096)
+||++|++|.+|+ ..-+...+++.|...|+++.|+| ||.++++++.||++.+||=.+++.+..+. .|.+.|.++
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfal 241 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFAL 241 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEE
Confidence 9999999999999 77788888999999999999977 67899999999999999999999998887 788899999
Q ss_pred EEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc---cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE
Q 001343 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1096)
+|+||++.+++++. |.+++|||+.+.++++++..... ..+. +-|. +..|++.+.+|.|.+++......+.
T Consensus 242 sWsPDs~~~~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG-~lWq--kd~lItVSl~G~in~ln~~d~~~~~ 314 (603)
T KOG0318|consen 242 SWSPDSTQFLTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVG-CLWQ--KDHLITVSLSGTINYLNPSDPSVLK 314 (603)
T ss_pred EECCCCceEEEecC----CceEEEEEeeccceEEEeecCCchhceEEE-EEEe--CCeEEEEEcCcEEEEecccCCChhh
Confidence 99999999999997 99999999999999999875433 2333 4453 6789999999999999999999999
Q ss_pred EeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCce
Q 001343 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANC 701 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~ 701 (1096)
.+.+|.. .|+++..+|++.+|++|+.||.|.-|+..++...
T Consensus 315 ~i~GHnK--~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~------------------------------------- 355 (603)
T KOG0318|consen 315 VISGHNK--SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD------------------------------------- 355 (603)
T ss_pred eeccccc--ceeEEEEcCCCCEEEeeccCceEEEEecCCcccc-------------------------------------
Confidence 9998876 8999999999999999999999999998776110
Q ss_pred eEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEE
Q 001343 702 KVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLA 781 (1096)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 781 (1096)
++.| ..|...|.+++.+..+. +++
T Consensus 356 ------------------------------------------------------~~~g-~~h~nqI~~~~~~~~~~-~~t 379 (603)
T KOG0318|consen 356 ------------------------------------------------------RLAG-KGHTNQIKGMAASESGE-LFT 379 (603)
T ss_pred ------------------------------------------------------cccc-ccccceEEEEeecCCCc-EEE
Confidence 0000 11788888888887665 889
Q ss_pred eecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEccc
Q 001343 782 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMT 861 (1096)
Q Consensus 782 ~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~ 861 (1096)
.+.|.++++.++......... .+ .+ ...-.+++..+||.+++.+.++.|.+..-.+
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~-----------------~~--~l-----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSE-----------------VV--KL-----GSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred EecCCeEEEEecccCcccccc-----------------ee--ec-----CCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 999999999877443221100 00 11 2223378999998777777766666555222
Q ss_pred ceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEec
Q 001343 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 941 (1096)
Q Consensus 862 ~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~ 941 (1096)
+ +.+.. -.-...+++++| ++..+++|+.||.|+||.+..+.++ .......|.. +++++++||
T Consensus 436 ~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~-------------ee~~~~~h~a-~iT~vaySp 497 (603)
T KOG0318|consen 436 K--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELK-------------EEAKLLEHRA-AITDVAYSP 497 (603)
T ss_pred c--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCccc-------------ceeeeecccC-CceEEEECC
Confidence 2 22221 234577899999 9999999999999999999987611 1223344554 999999999
Q ss_pred CCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccC
Q 001343 942 DQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLS 1020 (1096)
Q Consensus 942 dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1020 (1096)
|+.+||+ ...+.+.+||+.+.+.....-.-| .+.|.+++|+|+.+++|+|+.|-+|.||+++...-... ...+
T Consensus 498 d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH--takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~-iknA--- 571 (603)
T KOG0318|consen 498 DGAYLAAGDASRKVVLYDVASREVKTNRWAFH--TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII-IKNA--- 571 (603)
T ss_pred CCcEEEEeccCCcEEEEEcccCceecceeeee--eeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE-eccc---
Confidence 9999999 578999999999888633322323 99999999999999999999999999999998764422 2223
Q ss_pred CCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccC
Q 001343 1021 PSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 1021 ~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~ 1060 (1096)
|...|+. +.|- |...+++.++|.+|++|++.
T Consensus 572 -----H~~gVn~--v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 572 -----HLGGVNS--VAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -----cccCcee--EEEe--cCceEEeccCcceeEEeccc
Confidence 8888994 8997 68999999999999999974
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=408.52 Aligned_cols=582 Identities=16% Similarity=0.235 Sum_probs=444.3
Q ss_pred CCceeecCCCce-eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeeccccc
Q 001343 315 AEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAAC 393 (1096)
Q Consensus 315 ~~~v~~~~~~~~-~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 393 (1096)
...|.++.+++. ++++... ......+.+...|++++.||+|. +|++....|...+-++.....++.+.
T Consensus 26 G~sviSPvGNrvsv~dLknN-~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--------- 94 (893)
T KOG0291|consen 26 GNSVISPVGNRVSVFDLKNN-KSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--------- 94 (893)
T ss_pred CCEEEeccCCEEEEEEccCC-cceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe---------
Confidence 344555555543 4444321 11223355889999999999999 66666788888888887766654321
Q ss_pred CccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCc-----cccceeecccccCEEEEEEecCCCcEEE
Q 001343 394 SLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPNKLLCV 468 (1096)
Q Consensus 394 ~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~l~~h~~~v~~l~~s~d~~~~~l 468 (1096)
.+.+|.|+.|||||+++|+|.. +.+.||....... ....+++.+|-..|.++.|+.|.+ +|
T Consensus 95 -----------fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l 160 (893)
T KOG0291|consen 95 -----------FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LL 160 (893)
T ss_pred -----------ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eE
Confidence 3568999999999999998876 4899998754322 223346779999999999999999 99
Q ss_pred EEEeCCCcEEEEE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC------------------
Q 001343 469 VTCGDDKLIKVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------------------ 527 (1096)
Q Consensus 469 ~s~s~d~~i~iwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------ 527 (1096)
++||.|.++++|+ ...+ ..+.+.+|.++|.++.|.. +...+++.+.||.+.+|....
T Consensus 161 ~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~ 238 (893)
T KOG0291|consen 161 VTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDE 238 (893)
T ss_pred EeccccceEEEEEeccccccceEeccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccc
Confidence 9999999999999 3333 3677899999999988855 557899999999999997761
Q ss_pred -----CCe-----e------eEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEE
Q 001343 528 -----MGS-----R------VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (1096)
Q Consensus 528 -----~~~-----~------~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 591 (1096)
++. . .-+......+++.+|++..+.|+++-. .|...+|++....+++.+.-... .|..+
T Consensus 239 ~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~ 313 (893)
T KOG0291|consen 239 EMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTV 313 (893)
T ss_pred cccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEE
Confidence 111 0 011222357999999999999999887 88999999999999999887655 88899
Q ss_pred EEeCCCCEEEEEEc-CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccC
Q 001343 592 QFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 592 ~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
.|+..|.+++.|+. =|++.||+..+...+...++|.. .+++++++|||+++|+|++||.|++||...+ -+..++..
T Consensus 314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFte 390 (893)
T KOG0291|consen 314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTE 390 (893)
T ss_pred EecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEecc
Confidence 99999999999875 48999999999887777776655 9999999999999999999999999999988 67777777
Q ss_pred CCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCC
Q 001343 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (1096)
Q Consensus 671 ~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~ 750 (1096)
|+. .|+.+.|+..|+.+ ++.+-||+|+.||+.. ..
T Consensus 391 Hts-----~Vt~v~f~~~g~~l-------------------------------------lssSLDGtVRAwDlkR---Yr 425 (893)
T KOG0291|consen 391 HTS-----GVTAVQFTARGNVL-------------------------------------LSSSLDGTVRAWDLKR---YR 425 (893)
T ss_pred CCC-----ceEEEEEEecCCEE-------------------------------------EEeecCCeEEeeeecc---cc
Confidence 654 47788887766655 7778899999999974 45
Q ss_pred ceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCc
Q 001343 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830 (1096)
Q Consensus 751 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~ 830 (1096)
.++.++.| ..-...|++..|.|..+.+++.|.- .|.+|+.++|+.+. .+.| |
T Consensus 426 NfRTft~P----~p~QfscvavD~sGelV~AG~~d~F---------------------~IfvWS~qTGqllD-iLsG--H 477 (893)
T KOG0291|consen 426 NFRTFTSP----EPIQFSCVAVDPSGELVCAGAQDSF---------------------EIFVWSVQTGQLLD-ILSG--H 477 (893)
T ss_pred eeeeecCC----CceeeeEEEEcCCCCEEEeeccceE---------------------EEEEEEeecCeeee-hhcC--C
Confidence 55666554 4556789999999997777776621 34556678888888 6888 9
Q ss_pred CCCeeeeeecCCCcEEEEec-CCeEEEEEcccc-eEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 831 ~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
.++|.+++|+|+|..||+++ |.+|++||+-.. ..+.++ .+...+..++|+| ||+.|++++-||.|.+||+..+. .
T Consensus 478 EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~-q 554 (893)
T KOG0291|consen 478 EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAV-Q 554 (893)
T ss_pred CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhce-e
Confidence 99999999999999999999 999999998443 234444 4667899999999 99999999999999999998776 2
Q ss_pred eeecccccc------ccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCC--------
Q 001343 909 VWSIDTWEK------RKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDA-------- 973 (1096)
Q Consensus 909 ~w~~~~~~~------~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~-------- 973 (1096)
.-++++-.. ..-+....-.... ...+.+.+|+||..+++ |....|+||++.++-.++.+.-.+.
T Consensus 555 ~~~IdgrkD~~~gR~~~D~~ta~~sa~~-K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~e 633 (893)
T KOG0291|consen 555 VGSIDGRKDLSGGRKETDRITAENSAKG-KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLE 633 (893)
T ss_pred eccccchhhccccccccceeehhhcccC-CceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHH
Confidence 323333111 1111111111111 36799999999999999 8899999999987766544210000
Q ss_pred ---------------------------------------------CCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCc
Q 001343 974 ---------------------------------------------LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 974 ---------------------------------------------~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
-.-.|.++.|||.|+-+|.++..| +.||.+++.-
T Consensus 634 fln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~~~ 712 (893)
T KOG0291|consen 634 FLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDTTI 712 (893)
T ss_pred HhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccc-eEEEecCCce
Confidence 012367899999999999888887 7788887654
Q ss_pred e
Q 001343 1009 L 1009 (1096)
Q Consensus 1009 ~ 1009 (1096)
+
T Consensus 713 ~ 713 (893)
T KOG0291|consen 713 L 713 (893)
T ss_pred E
Confidence 3
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=414.22 Aligned_cols=570 Identities=15% Similarity=0.213 Sum_probs=442.2
Q ss_pred CCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 001343 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLY 433 (1096)
Q Consensus 354 p~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vw 433 (1096)
..|+ ++| ++.-..|.+||+.+|+.... + +.......|+|+.-+||.-.||+|..||.|+||
T Consensus 32 ~~Gr-~va-~~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGR-AVA-VSALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCc-EEE-EeccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 3577 344 34567899999999965432 0 012234689999999999999999999999999
Q ss_pred EccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEE
Q 001343 434 SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF 512 (1096)
Q Consensus 434 d~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 512 (1096)
+..++..+. ++.||+..|+++.|...|. .|+|||.|+.|.+|| ....-+..++||...|+..-|.. +..+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEE
Confidence 999875444 6889999999999999999 899999999999999 77778899999999999988854 457999
Q ss_pred EEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC------------eeeEEE
Q 001343 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------------TIKRTY 580 (1096)
Q Consensus 513 s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~------------~~~~~~ 580 (1096)
+.+.|+.|++||+++..+..+...|...+..+++.+ +.+++++. ++.+.+|++... +...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777776 899999998311 111122
Q ss_pred cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE--------------E------------------eecCCC
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--------------S------------------TDAEGG 628 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~------------------~~~~~~ 628 (1096)
........-.+...++++++++-+.|..+.+|.+.+.+.+. . +.....
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 21111123335667788889999999999999886532110 0 000011
Q ss_pred CCCccEEEEeCCCC---EEEEEECCCcEEEEEcCCCccc---cccccCCCcccccCcceeEEeecCCCeEEecCCCCcee
Q 001343 629 LPNLPRLRFSKEGN---LLAVTTADNGFKILANAIGLRS---LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1096)
Q Consensus 629 ~~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~ 702 (1096)
...+.++.|-|.+. .|+. -.++++..|.+...... ...........++.-|.+++++.+...+
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~---------- 388 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILL---------- 388 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceee----------
Confidence 23567888877543 3343 56778888887652111 1111112223345557777777665554
Q ss_pred EeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEe
Q 001343 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1096)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 782 (1096)
++++. +.+++|+.. +.+|.. ++ ....+.+..|.|.+++++.|
T Consensus 389 ---------------------------~Sga~-~SikiWn~~----t~kciR-Ti-----~~~y~l~~~Fvpgd~~Iv~G 430 (888)
T KOG0306|consen 389 ---------------------------ASGAG-ESIKIWNRD----TLKCIR-TI-----TCGYILASKFVPGDRYIVLG 430 (888)
T ss_pred ---------------------------eecCC-CcEEEEEcc----CcceeE-Ee-----ccccEEEEEecCCCceEEEe
Confidence 33332 889999987 566665 33 34589999999999999999
Q ss_pred ecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEccc
Q 001343 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 861 (1096)
Q Consensus 783 ~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~ 861 (1096)
..+|.+.+|++.... .+. +.+ +|.+.|++++.+||++.+++|+ |.+|++||..-
T Consensus 431 ~k~Gel~vfdlaS~~----------------------l~E-ti~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 431 TKNGELQVFDLASAS----------------------LVE-TIR--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred ccCCceEEEEeehhh----------------------hhh-hhh--ccccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 999999999974422 121 222 3999999999999999999999 89999999731
Q ss_pred -----ceEEEeec-------CCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCC
Q 001343 862 -----FKVMTTFM-------SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGK 929 (1096)
Q Consensus 862 -----~~~~~~~~-------~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 929 (1096)
|...+.+. .-...|.|+.+|| |+++|+++--|.+|+||-+++-+ +.-.+.||
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlK---------------FflsLYGH 549 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLK---------------FFLSLYGH 549 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEeccee---------------eeeeeccc
Confidence 22211122 2246789999999 99999999999999999999877 66789999
Q ss_pred CCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCc
Q 001343 930 TPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 930 ~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
.- +|.++..|||++.+++ +.|+.|+||-++-|.|-+.+..| .+.|.++.|-|+..++++++.|+.|+-||-+.-+
T Consensus 550 kL-PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH---dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 550 KL-PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH---DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred cc-ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc---cCceeEEEEcccceeEEEecCcceEEeechhhhh
Confidence 98 9999999999999999 89999999999999999999886 8999999999999999999999999999988877
Q ss_pred eeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCC
Q 001343 1009 LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1062 (1096)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~ 1062 (1096)
.+..+. + |...|+ |++.+| +|.+++++|.|.+|++|+-.+.
T Consensus 626 ~iq~L~-------~---H~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 626 EIQKLD-------G---HHSEVW--CLAVSP-NGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred hheeec-------c---chheee--eeEEcC-CCCeEEeccCCceeEeeeccCc
Confidence 665554 3 899999 899999 9999999999999999997663
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=400.88 Aligned_cols=536 Identities=16% Similarity=0.251 Sum_probs=424.9
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d 427 (1096)
-.+.|++||.. +++ ...+.|.++|+.+.+... .--.+...|.+++.||+|.+|++....
T Consensus 18 Gnl~ft~dG~s-viS-PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNS-VIS-PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCE-EEe-ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 34789999985 443 467899999998865432 122367789999999999999999999
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc---------eEEEeeCCCCCeE
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR---------KLFNFEGHEAPVY 498 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---------~~~~~~~~~~~v~ 498 (1096)
|...+-++.....+..+ .-+.+|.++.|||+|+ ++|.|. .+.+.||...+. ..+++.+|...|.
T Consensus 77 g~~~lvs~~~r~Vlh~f----~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLHRF----NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeEEE----eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 99988888775544422 2467899999999999 565554 678999983222 2356789999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC---
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--- 573 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~--- 573 (1096)
++.|+. |.++|++|+.|.++++|+++..+. ...+.+|...|.+..|..+...+++.+. +|.+.+|....
T Consensus 150 si~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvsk----dG~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 150 SIDWSD--DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSK----DGALFVWTCDLRPP 223 (893)
T ss_pred EEEecc--CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEec----CceEEEEEecCCCc
Confidence 999965 778999999999999999988777 5577889999999999999999999997 99999997661
Q ss_pred --------------------Cee---------e-EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 574 --------------------GTI---------K-RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 574 --------------------~~~---------~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
++. . +.+-......+.+.+|++.-+.|++|-..|...+|.+....+++.+
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L 303 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL 303 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe
Confidence 111 0 1111112246888999998899999999999999999999999999
Q ss_pred ecCCCCCCccEEEEeCCCCEEEEEECC-CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCcee
Q 001343 624 DAEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1096)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~ 702 (1096)
....+ .|..++|+..|..||.|+.. |.+.+|+..+. ..+-..++|.. .+++++++|||+++
T Consensus 304 Sis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQQgH~~-----~i~~l~YSpDgq~i---------- 365 (893)
T KOG0291|consen 304 SISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQQGHSD-----RITSLAYSPDGQLI---------- 365 (893)
T ss_pred ecccc--eeeEEEecccCCEEEEcCCccceEEEEEeecc-ceeeecccccc-----ceeeEEECCCCcEE----------
Confidence 88766 89999999999999999875 89999999776 33334455533 36678877666554
Q ss_pred EeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEe
Q 001343 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1096)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 782 (1096)
|+|+.||.|++||.. .+.|.. ++.. |.+.|+.+.|+..|+.++++
T Consensus 366 ---------------------------aTG~eDgKVKvWn~~----SgfC~v-TFte---Hts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 366 ---------------------------ATGAEDGKVKVWNTQ----SGFCFV-TFTE---HTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred ---------------------------EeccCCCcEEEEecc----CceEEE-Eecc---CCCceEEEEEEecCCEEEEe
Confidence 899999999999987 455655 7777 99999999999999999999
Q ss_pred ecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-C-CeEEEEEcc
Q 001343 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-G-GKISLFNMM 860 (1096)
Q Consensus 783 ~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-d-g~v~iwd~~ 860 (1096)
+-||+|+.||+.... +.. ++.. .......|++..|.|.+++.|+ | =.|+||+++
T Consensus 411 SLDGtVRAwDlkRYr----------------------NfR-Tft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYR----------------------NFR-TFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred ecCCeEEeeeecccc----------------------eee-eecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 999999999985421 111 2221 1344567899999999999998 4 349999999
Q ss_pred cceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEe
Q 001343 861 TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 940 (1096)
Q Consensus 861 ~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs 940 (1096)
+|+++..+.+|.++|.+++|+| ++..|++++.|++|++||+-... ..+.+++-.. .+..++|+
T Consensus 467 TGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~--------------~~vEtl~i~s--dvl~vsfr 529 (893)
T KOG0291|consen 467 TGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSS--------------GTVETLEIRS--DVLAVSFR 529 (893)
T ss_pred cCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccC--------------ceeeeEeecc--ceeEEEEc
Confidence 9999999999999999999999 89999999999999999997653 0122222222 78999999
Q ss_pred cCCcEEEE-EecceEEEEEcccceecccccc-----------------CCCCCCCceEEEEeeCCcEEEEEecCCcEEEE
Q 001343 941 ADQVRMLV-VHETQLAIYDASKMERIRQWTP-----------------QDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1002 (1096)
Q Consensus 941 ~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~-----------------~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vw 1002 (1096)
|||+.|++ .-||.|.+||+..+..+..+.+ ..+.....+.+++|+||++|++|+....|++|
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 99999999 7899999999987665433211 01124678899999999999999999999999
Q ss_pred ecCCCceeE
Q 001343 1003 DADTLRLRC 1011 (1096)
Q Consensus 1003 d~~~~~~~~ 1011 (1096)
++.++-++.
T Consensus 610 ~v~~~vllk 618 (893)
T KOG0291|consen 610 DVPEGVLLK 618 (893)
T ss_pred ECchhheee
Confidence 998876444
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=411.64 Aligned_cols=568 Identities=14% Similarity=0.237 Sum_probs=439.3
Q ss_pred eeecCCCce-eeecCCCCcceEE-eecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCc
Q 001343 318 VTYSSSRHQ-TWSLDDLPRTVAV-SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL 395 (1096)
Q Consensus 318 v~~~~~~~~-~~~~~~~~~~~~~-~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 395 (1096)
|+.+...+- +|++....-.... ....+.+|+|++-+|+.- +||+|..||.|+||+..++....+
T Consensus 37 va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t------------- 102 (888)
T KOG0306|consen 37 VAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT------------- 102 (888)
T ss_pred EEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------
Confidence 444444433 8888754322222 234557999999999987 799999999999999998876643
Q ss_pred cccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 396 PFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 396 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
+.||+.+|+++.|+..|..||+||.|+.|.+||+-...... .+.||+..|+.+-|..+.+ +++++|.|+
T Consensus 103 ------fngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs 171 (888)
T KOG0306|consen 103 ------FNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDS 171 (888)
T ss_pred ------ecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCc
Confidence 89999999999999999999999999999999997654444 5889999999999998777 899999999
Q ss_pred cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee-------------eEEeCCCCcE
Q 001343 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-------------VDYDAPGHWC 541 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~i 541 (1096)
.|++|| .+..|..+.-.|.+.++++++.+ +.+++++.|+.+++|++....-. .......+..
T Consensus 172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~ 247 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGRE 247 (888)
T ss_pred eEEEEecccceeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCce
Confidence 999999 88999999999999999999965 58999999999999998311100 0111222345
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE-----------------------------------EEcCcCcc
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR-----------------------------------TYAGFRKK 586 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-----------------------------------~~~~~~~~ 586 (1096)
..++..++++++++-+. |..+.++.+.+.+.+. ++.. ..
T Consensus 248 i~l~~d~s~r~~~c~g~----d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~--~~ 321 (888)
T KOG0306|consen 248 INLVTDFSDRFLVCQGA----DKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT--SA 321 (888)
T ss_pred eEEeecCcccEEEEecc----hhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec--hh
Confidence 56777788888888776 7778777776421100 0000 11
Q ss_pred ceEEEEEeCCCC---EEEEEEcCCeEEEEeCCC-Ce------EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 587 SNGVVQFDTTQN---HFLAVGEDSQIKFWDMDN-VN------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 587 ~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~-~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
.+.++.+.|.++ .++. -.++.+..|.+.. +. .+..+...+|...|.+++++.+...+++|+. +.|++|
T Consensus 322 kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiW 399 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIW 399 (888)
T ss_pred heeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEE
Confidence 355566666542 3333 5677888888765 21 2334555566669999999999877777654 589999
Q ss_pred EcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCC
Q 001343 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1096)
Q Consensus 657 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg 736 (1096)
+..+. ++++++... .+-+..|-|.++ ++++|...|
T Consensus 400 n~~t~-kciRTi~~~-------y~l~~~Fvpgd~-------------------------------------~Iv~G~k~G 434 (888)
T KOG0306|consen 400 NRDTL-KCIRTITCG-------YILASKFVPGDR-------------------------------------YIVLGTKNG 434 (888)
T ss_pred EccCc-ceeEEeccc-------cEEEEEecCCCc-------------------------------------eEEEeccCC
Confidence 99888 666666542 133445544444 457777779
Q ss_pred CccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccC
Q 001343 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (1096)
Q Consensus 737 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~ 816 (1096)
.+.+||+.. ..... +.+. |.+.|.+++.+||+..+++++.|.+|++|++....-.| |. +-++..+.
T Consensus 435 el~vfdlaS----~~l~E-ti~A---HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~-gt-----~~k~lsl~ 500 (888)
T KOG0306|consen 435 ELQVFDLAS----ASLVE-TIRA---HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP-GT-----QKKVLSLK 500 (888)
T ss_pred ceEEEEeeh----hhhhh-hhhc---cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC-cc-----cceeeeec
Confidence 999999873 22221 3334 99999999999999999999999999999985422211 10 00111111
Q ss_pred ccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC
Q 001343 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1096)
Q Consensus 817 ~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg 895 (1096)
..+.+. -...|.|+.+||||++||++- |.+|+||-+.+.+..-++-||.-+|.|+.+|| |+++++||+.|+
T Consensus 501 ~~rtLe-------l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADK 572 (888)
T KOG0306|consen 501 HTRTLE-------LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADK 572 (888)
T ss_pred cceEEe-------ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCC
Confidence 112221 467899999999999999998 99999999999999999999999999999999 999999999999
Q ss_pred eEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCC
Q 001343 896 TIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDAL 974 (1096)
Q Consensus 896 ~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~ 974 (1096)
+|+||-++-|. |-+.+-+|.. .|.+|.|-|+...+.+ |.|+.++-||-...++++.+.+|
T Consensus 573 nVKiWGLdFGD---------------CHKS~fAHdD-Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H--- 633 (888)
T KOG0306|consen 573 NVKIWGLDFGD---------------CHKSFFAHDD-SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH--- 633 (888)
T ss_pred ceEEeccccch---------------hhhhhhcccC-ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc---
Confidence 99999999888 7788889988 9999999999888888 89999999999999999999987
Q ss_pred CCCceEEEEeeCCcEEEEEecCCcEEEEecCCCc
Q 001343 975 SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 975 ~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
...|++++.+|+|.++++++.|.+|++|.-....
T Consensus 634 ~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 634 HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred hheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 7899999999999999999999999999976543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=394.56 Aligned_cols=311 Identities=22% Similarity=0.344 Sum_probs=281.2
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+|.++|.|++|+|+|+ .||+|+.|.++++||+.+...+.+ .++|..+|.|++|||||+.|
T Consensus 113 GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDGKKI 172 (480)
T ss_pred CCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCcchh
Confidence 5999999999999999 599999999999999999887654 89999999999999999999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec-----CCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-----PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-----d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
|+|+.||+|++||.++|+++.. .|.+|+..|++++|.| ..+ +|++++.||+|+||| ..+.++..+.||+.
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgHT~ 248 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGHTA 248 (480)
T ss_pred hccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccCcc
Confidence 9999999999999999988765 6889999999999976 455 899999999999999 88999999999999
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEc-----------CCC--------------
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYS-----------ADG-------------- 550 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-----------~~~-------------- 550 (1096)
+|+|+.|- ++ .+|++|+.|++|++|+...+.....+.+|.+.|+.++.+ |.+
T Consensus 249 ~VTCvrwG--G~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 249 SVTCVRWG--GE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred ceEEEEEc--CC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 99999983 33 499999999999999999988899999999999999987 223
Q ss_pred -----------CEEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 551 -----------SRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 551 -----------~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
..+++++. |..+.+|+... .+++..+.+|.. .|+.+.|+||++++++++.|..|++|+.++|+
T Consensus 326 ~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk 400 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGK 400 (480)
T ss_pred HHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcc
Confidence 34889886 99999999754 458888999988 89999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
.+..+++|-. .|+.++|+.|.++|++|+.|.++++|++.+. +....+.+|.++ |.++.++|||..+
T Consensus 401 ~lasfRGHv~--~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DE-----Vf~vDwspDG~rV 466 (480)
T KOG0271|consen 401 FLASFRGHVA--AVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADE-----VFAVDWSPDGQRV 466 (480)
T ss_pred hhhhhhhccc--eeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCCCCce-----EEEEEecCCCcee
Confidence 9999998866 9999999999999999999999999999887 778888888776 5578887776665
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=373.68 Aligned_cols=530 Identities=14% Similarity=0.222 Sum_probs=415.3
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCe
Q 001343 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1096)
Q Consensus 350 v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~ 429 (1096)
+--.|.|..++.+ ....|.+-++++..... ++.+|...++-..|||.|.|+|+|...|.
T Consensus 24 ig~dpkgd~ilY~--nGksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYT--NGKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEe--CCCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCc
Confidence 3445677767765 45688888888766543 37889999999999999999999999999
Q ss_pred EEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC----CcEEEEEcCCceEEEeeCCCCCeEEEEeeec
Q 001343 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (1096)
Q Consensus 430 i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 505 (1096)
|+|||....+.+. ..+++.-.++|..++|+.|++ .|++.++. |.+.+|| +|..+-.+.||...|+++.|-|+
T Consensus 83 vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~--RI~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 83 VRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSK--RIAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred EEEEeccCcceee-eeeeeecccccccceeCCCCc--EEEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCC
Confidence 9999987633222 225777889999999999999 56655533 3455664 56667789999999999999886
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc---C
Q 001343 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA---G 582 (1096)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~---~ 582 (1096)
.. -.+++|+.|++|.+|+=...+....+..|..-|.++.|+|||.++++.+. |+.+++||-.+|+.+..+. +
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 43 67999999999999976666666777888889999999999999999997 9999999999999999998 7
Q ss_pred cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC-CCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 583 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|- ...|++.+.+|.|.+++...+
T Consensus 234 HkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 777 8999999999999999999999999999999999888755431 122345554 557888888898888877554
Q ss_pred ccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccce
Q 001343 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPW 741 (1096)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw 741 (1096)
. .++
T Consensus 311 ~-~~~--------------------------------------------------------------------------- 314 (603)
T KOG0318|consen 311 S-VLK--------------------------------------------------------------------------- 314 (603)
T ss_pred C-hhh---------------------------------------------------------------------------
Confidence 1 111
Q ss_pred eeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccc
Q 001343 742 QLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLM 821 (1096)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~ 821 (1096)
.+.| |...|+++..++++++|++++.||.|.-|+... |..-
T Consensus 315 --------------~i~G---HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~----------------------g~~~ 355 (603)
T KOG0318|consen 315 --------------VISG---HNKSITALTVSPDGKTIYSGSYDGHINSWDSGS----------------------GTSD 355 (603)
T ss_pred --------------eecc---cccceeEEEEcCCCCEEEeeccCceEEEEecCC----------------------cccc
Confidence 2334 889999999999999999999999999998643 2222
Q ss_pred cccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEe--ecCCCCCeeEEEEecCCCcEEEEeeCCCeEEE
Q 001343 822 ANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899 (1096)
Q Consensus 822 ~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~--~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~i 899 (1096)
. +.|..|...|.+++.+..+.++.++-|+++++.++.....-.. ++- .....+++..+ ++.+++.++.++.+.+
T Consensus 356 ~--~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~iv~l 431 (603)
T KOG0318|consen 356 R--LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISDIVLL 431 (603)
T ss_pred c--cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCcEEEE
Confidence 2 3333499999999999888888888899999999854433222 121 22334888888 7777777777765555
Q ss_pred EeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccc-cccCCCCCCC
Q 001343 900 YNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQ-WTPQDALSAP 977 (1096)
Q Consensus 900 w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~ 977 (1096)
=+...-. ...-+ -...+++++|++..+++ +.|+.|+||.+..++.... ....| .++
T Consensus 432 ~~~~~~~-----------------~~~~~---y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h--~a~ 489 (603)
T KOG0318|consen 432 QDQTKVS-----------------SIPIG---YESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH--RAA 489 (603)
T ss_pred ecCCcce-----------------eeccc---cccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecc--cCC
Confidence 4343321 11112 16789999999999999 8999999999988765433 22333 999
Q ss_pred ceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEE
Q 001343 978 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM 1057 (1096)
Q Consensus 978 i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW 1057 (1096)
|++++||||+.|||++...+.|.+||+.+.+... -.-.. |+..|. |++|+| +..++|||+-|-+|.||
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~F--------HtakI~--~~aWsP-~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT-NRWAF--------HTAKIN--CVAWSP-NNKLVATGSLDTNVIIY 557 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceec-ceeee--------eeeeEE--EEEeCC-CceEEEeccccceEEEE
Confidence 9999999999999999999999999999887521 11111 888999 799999 99999999999999999
Q ss_pred ccCCCCCc
Q 001343 1058 EPSESEGK 1065 (1096)
Q Consensus 1058 ~v~~~~~~ 1065 (1096)
++....+.
T Consensus 558 sv~kP~~~ 565 (603)
T KOG0318|consen 558 SVKKPAKH 565 (603)
T ss_pred EccChhhh
Confidence 99887643
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=383.67 Aligned_cols=364 Identities=18% Similarity=0.261 Sum_probs=299.5
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 478999999999999999999999999999999999977666 6889999999999999999 89999999999999
Q ss_pred E-cCCceE-EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 481 E-LSGRKL-FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 481 d-~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
| .+|+++ ..+.+|...|++++|.|-. ..|..+++++++.
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~sk 225 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSK 225 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccC
Confidence 9 777665 7799999999999997632 1255667777776
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
|+.++|||+..+.++..+.+|.. .|+|++|..+ .++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+
T Consensus 226 ----Dg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lals 297 (480)
T KOG0271|consen 226 ----DGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALS 297 (480)
T ss_pred ----CCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeecc
Confidence 88888899888999999999998 9999999765 5899999999999999999999999999988 89999987
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~ 718 (1096)
.+- .|-+|..| |.|+..
T Consensus 298 Tdy-~LRtgaf~------------------------------------~t~~~~-------------------------- 314 (480)
T KOG0271|consen 298 TDY-VLRTGAFD------------------------------------HTGRKP-------------------------- 314 (480)
T ss_pred chh-hhhccccc------------------------------------cccccC--------------------------
Confidence 652 12222211 111110
Q ss_pred CCccCCCCCCccccCCC--CCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCC
Q 001343 719 DPTSRSMDKPRTVDDVT--DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (1096)
Q Consensus 719 ~~~~s~d~~~l~s~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~ 796 (1096)
-+.++. ....-|+.. .-..+..+++++.|.++.+|+-.
T Consensus 315 -----------~~~se~~~~Al~rY~~~---------------------------~~~~~erlVSgsDd~tlflW~p~-- 354 (480)
T KOG0271|consen 315 -----------KSFSEEQKKALERYEAV---------------------------LKDSGERLVSGSDDFTLFLWNPF-- 354 (480)
T ss_pred -----------CChHHHHHHHHHHHHHh---------------------------hccCcceeEEecCCceEEEeccc--
Confidence 000000 000001100 00123568899999999999842
Q ss_pred ccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCe
Q 001343 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS 875 (1096)
Q Consensus 797 ~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i 875 (1096)
.+.+++. .+.| |...|..+.||||++++|+|+ |..|++|+.++|+.+.+|++|-+.|
T Consensus 355 -------------------~~kkpi~-rmtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V 412 (480)
T KOG0271|consen 355 -------------------KSKKPIT-RMTG--HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV 412 (480)
T ss_pred -------------------ccccchh-hhhc--hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcccee
Confidence 2222333 4556 999999999999999999999 8999999999999999999999999
Q ss_pred eEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceE
Q 001343 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQL 954 (1096)
Q Consensus 876 ~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i 954 (1096)
..++|+. |.++|++|+.|.++++|++.+.+ ..+.+.||.. +|.++.|+|||..+++ +.|+.+
T Consensus 413 Yqvawsa-DsRLlVS~SkDsTLKvw~V~tkK---------------l~~DLpGh~D-EVf~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 413 YQVAWSA-DSRLLVSGSKDSTLKVWDVRTKK---------------LKQDLPGHAD-EVFAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred EEEEecc-CccEEEEcCCCceEEEEEeeeee---------------ecccCCCCCc-eEEEEEecCCCceeecCCCceEE
Confidence 9999999 99999999999999999999987 6678999998 9999999999999999 899999
Q ss_pred EEEE
Q 001343 955 AIYD 958 (1096)
Q Consensus 955 ~iwd 958 (1096)
++|.
T Consensus 476 ~lw~ 479 (480)
T KOG0271|consen 476 RLWR 479 (480)
T ss_pred Eeec
Confidence 9994
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=353.55 Aligned_cols=570 Identities=12% Similarity=0.145 Sum_probs=383.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEe--CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
|..+++|++||++|+ |+|+|- ....++||++.....+.. |..|+-.|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 677999999999999 699984 456899999988776543 7889999999999999999
Q ss_pred EEEEEC--CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE---eeCCC
Q 001343 421 VGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN---FEGHE 494 (1096)
Q Consensus 421 l~s~~~--dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~---~~~~~ 494 (1096)
+++.+. |-.|.+||+....... -..-...|..++|+.||. +++|.+ ...|++|. ..++.... +.+..
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998765 4467888876543222 223456799999999999 888887 78999999 44432111 11111
Q ss_pred CCeEEEEeeecCCCcEEEEEE-------------CCCeEEEEEcCCCCeeeEE-eCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 495 APVYSICPHHKENIQFIFSTA-------------IDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~-------------~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.-.-.+.+ ..++++++ ..|.+.-|.-+ ..+-++ ........|++++ .+++++++.
T Consensus 210 ~~lg~lr~-----n~f~avaCg~gicAestfait~qGhLvEFSsR--RLLDKWVqcRTTnAnCIcVs--~r~I~cgCa-- 278 (1080)
T KOG1408|consen 210 YFLGNLRF-----NEFLAVACGVGICAESTFAITAQGHLVEFSSR--RLLDKWVQCRTTNANCICVS--SRLIACGCA-- 278 (1080)
T ss_pred hhcccccc-----chhhhhhhcCcccccceEEEecccceeeechh--hhhhhhhhhhccccceeeee--cceEEEeec--
Confidence 11111111 11222211 22333222111 110000 0112234455554 568888887
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcC--------------------c---cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFR--------------------K---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~--------------------~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
++.|++|+..+-....++...+ . ...-.+.|++....+.+...|..++|||++.-
T Consensus 279 --~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 279 --KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDV 356 (1080)
T ss_pred --cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccc
Confidence 9999999988755544433110 0 11234678888899999999999999999874
Q ss_pred eEEEEe-ecCCCCCCccEEEEeCC-----------CCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEe
Q 001343 618 NILTST-DAEGGLPNLPRLRFSKE-----------GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVAL 685 (1096)
Q Consensus 618 ~~~~~~-~~~~~~~~v~~~~~s~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (1096)
..+... ....|...|+++.--|. ...+.+++.|++|++|++..+. .-..+...... .....+.
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct-nn~vyrRNils---~~l~ki~- 431 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT-NNQVYRRNILS---ANLSKIP- 431 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc-ccceeecccch---hhhhcCc-
Confidence 433221 11122224555443331 1358899999999999997641 11111100000 0000000
Q ss_pred ecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcc
Q 001343 686 KVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765 (1096)
Q Consensus 686 s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1096)
..|+..-+. .|...-++|-. ....-+ ...
T Consensus 432 -------------------------------------y~d~~~q~~--~d~~~~~fdka---------~~s~~d---~r~ 460 (1080)
T KOG1408|consen 432 -------------------------------------YEDSTQQIM--HDASAGIFDKA---------LVSTCD---SRF 460 (1080)
T ss_pred -------------------------------------cccCchhhh--hhccCCccccc---------chhhcC---ccc
Confidence 001100000 00011112211 001112 566
Q ss_pred cEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCC---
Q 001343 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--- 842 (1096)
Q Consensus 766 ~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~d--- 842 (1096)
.+++++.+|+|++|++|..-|.+++|++..- +.+. .+. +|...|.|+.||..
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l----------------------~~~~-~~e--AHesEilcLeyS~p~~~ 515 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQEL----------------------EYTC-FME--AHESEILCLEYSFPVLT 515 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhh----------------------hhhh-hee--cccceeEEEeecCchhh
Confidence 8999999999999999999999999997431 1111 233 39999999999853
Q ss_pred CcEEEEec-CCeEEEEEc-ccceEEEeecCCCCCeeEEEEecCCC--cEEEEeeCCCeEEEEeeccceeeeeeccccccc
Q 001343 843 DSYVMSAT-GGKISLFNM-MTFKVMTTFMSPPPASTFLAFHPQDN--NIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKR 918 (1096)
Q Consensus 843 g~~la~~~-dg~v~iwd~-~~~~~~~~~~~h~~~i~~l~~s~~d~--~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~ 918 (1096)
.++||+++ |.-|.|||+ ++..++.++.+|...|+++.|.- .| ..+++++.|+.|.+=-.....
T Consensus 516 ~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~------------ 582 (1080)
T KOG1408|consen 516 NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKAS------------ 582 (1080)
T ss_pred hHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhcccc------------
Confidence 38999999 677999998 45677899999999999999987 45 789999999876543222111
Q ss_pred cceeeecCCCCCC---CCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEe
Q 001343 919 KSVTIHIPAGKTP---TGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 994 (1096)
Q Consensus 919 ~~~~~~~~~~~~~---~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 994 (1096)
.-...+.++.. +.+.++++.|..+++++ +.|+.|+|||+++|+..+.+.+.+.+.+....+...|.|.|||+.+
T Consensus 583 --~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 583 --SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC 660 (1080)
T ss_pred --CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee
Confidence 00111111111 46788999999999999 8999999999999999999998887788999999999999999999
Q ss_pred cCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 995 CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 995 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
.|.++.++|+.+|++...+. | |++.|+ .+.|.+ |-+.|++.+.||+|+||.+..
T Consensus 661 sdktl~~~Df~sgEcvA~m~-------G---HsE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 661 SDKTLCFVDFVSGECVAQMT-------G---HSEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCCceEEEEeccchhhhhhc-------C---cchhee--eeeecc-cchhheeecCCceEEEEECch
Confidence 99999999999999877655 5 999999 699999 999999999999999999865
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=365.43 Aligned_cols=275 Identities=19% Similarity=0.299 Sum_probs=241.9
Q ss_pred ecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeec---cccee---------ecccccCc
Q 001343 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS---KPFKI---------WDMAACSL 395 (1096)
Q Consensus 329 ~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~---~~~~~---------~~~~~~~~ 395 (1096)
+.+.+|..+..++. ....|+|+.|++|++ ++|.|..|..|++|.+...+...- ..+.- .++.....
T Consensus 362 ~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 362 GRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred CCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC
Confidence 34567888888887 567899999999999 899999999999999985432110 00000 12222223
Q ss_pred cccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 396 PFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 396 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
......+.||.++|..+.|+|+.++|++++.|++|++|.+.+..++- .+.||..+|+++.|+|-|- ++||+|.|+
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~ 515 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQ 515 (707)
T ss_pred CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCc
Confidence 33344589999999999999999999999999999999999977665 5779999999999999998 999999999
Q ss_pred cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
+.++|. ....+++.+.+|-+.|.|+.||| +..++++||.|.++|+||+.++..+..+.+|..+|.+++|||+|++|+
T Consensus 516 tArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred eeeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 999999 88999999999999999999998 668999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
+|+. ++.|.+||+.+++.+..+.+|.+ .+.++.|+.+|..|++|+.|++|++||+..
T Consensus 594 Sg~e----d~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 594 SGDE----DGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eccc----CCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9997 99999999999999999999966 999999999999999999999999999865
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=337.59 Aligned_cols=283 Identities=17% Similarity=0.269 Sum_probs=266.6
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC--C
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--~ 418 (1096)
++.+.+|..+.||+|++ +||||+-+|.++||+..+...+.. |.||.+.|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 34677999999999999 799999999999999998866643 9999999999999996 6
Q ss_pred CEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCe
Q 001343 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v 497 (1096)
..||+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+...+||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876666 6889999999999999999 999999999999999 8888888899999999
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
.+++|++ ||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..+++|+. |++++|||++....+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999987 7789999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred EEEcCcCccceEEEEEeC-CCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 578 RTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
.++.+|.+ .|+.++|+| .|.+|++++.|++++||...+.++++.+.+|.. .|.++.+++++..+++++.|.++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeec
Confidence 99999998 899999998 778999999999999999999999999999877 89999999999999999999999999
Q ss_pred E
Q 001343 657 A 657 (1096)
Q Consensus 657 d 657 (1096)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=327.33 Aligned_cols=645 Identities=14% Similarity=0.171 Sum_probs=408.6
Q ss_pred CceeecCCCce-eeecCCCCcceEEeec-CCCceEEEEEcCCCC--cEEEEEeCCCeEEEEecCCCCeeecccceeeccc
Q 001343 316 EEVTYSSSRHQ-TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQ--TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMA 391 (1096)
Q Consensus 316 ~~v~~~~~~~~-~~~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~--~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 391 (1096)
.-++|..+..- +|+.... ....++. |..+|+|+.|-|+.+ -++++|+.|+.|++|.+........
T Consensus 26 ~~vafGa~~~Iav~dp~k~--~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i--------- 94 (764)
T KOG1063|consen 26 GLVAFGAGPAIAVADPEKI--LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI--------- 94 (764)
T ss_pred ceEEecCCceEEEeCcccc--eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE---------
Confidence 34666665543 6665543 3444555 999999999999876 1488999999999999984333321
Q ss_pred ccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccc--cCEEEEEEecCCCcEEEE
Q 001343 392 ACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV--GAVNDLAFAYPNKLLCVV 469 (1096)
Q Consensus 392 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~--~~v~~l~~s~d~~~~~l~ 469 (1096)
..+.+|...+.|+. .......+...|+.+.+||.+..+.. ....+.--. .-..|+++.++.+..+++
T Consensus 95 --------~~~~g~~~~~~cv~--a~~~~~~~~~ad~~v~vw~~~~~e~~-~~~~~rf~~k~~ipLcL~~~~~~~~~lla 163 (764)
T KOG1063|consen 95 --------YTIQGHCKECVCVV--ARSSVMTCKAADGTVSVWDKQQDEVF-LLAVLRFEIKEAIPLCLAALKNNKTFLLA 163 (764)
T ss_pred --------EeecCcceeEEEEE--eeeeEEEeeccCceEEEeecCCCcee-eehheehhhhhHhhHHHhhhccCCcEEEE
Confidence 12556666555554 32223333368999999999554411 111122112 223567777755554778
Q ss_pred EEeCCCcEEEEE-cCC--ceEEEeeCCCCCeEEEEeeecCC-CcEEEEEECCCeEEEEEcCCCC----------------
Q 001343 470 TCGDDKLIKVWE-LSG--RKLFNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMG---------------- 529 (1096)
Q Consensus 470 s~s~d~~i~iwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~---------------- 529 (1096)
.|+.+..|.++. ..+ +.+..+.||.+.|.+++|...+. .-+|+++|.|..||+|.+.-..
T Consensus 164 ~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~ 243 (764)
T KOG1063|consen 164 CGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN 243 (764)
T ss_pred ecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccC
Confidence 888888888887 433 45677899999999999976544 5688999999999999765332
Q ss_pred -----eee----------EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC--eeeEEEc----CcCccce
Q 001343 530 -----SRV----------DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYA----GFRKKSN 588 (1096)
Q Consensus 530 -----~~~----------~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~----~~~~~~i 588 (1096)
... .+.+|...|+++.|+|.+..|++++. |.++.+|...+. --+.... ++.....
T Consensus 244 ~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF 319 (764)
T KOG1063|consen 244 LPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGF 319 (764)
T ss_pred CceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccce
Confidence 000 12378889999999999999999887 999999987643 2222221 2222256
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEeCC-CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccccc
Q 001343 589 GVVQFDTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (1096)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 667 (1096)
....|+|+++.+++-+..|..++|... ...........+|...|.+++|+|.|.+|.+.+.|.+-|+|-.-..++....
T Consensus 320 ~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHE 399 (764)
T KOG1063|consen 320 WGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHE 399 (764)
T ss_pred eeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceee
Confidence 778899999999999999999999933 2333444444555669999999999999999999999999865421111111
Q ss_pred ccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeee
Q 001343 668 VENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIV 747 (1096)
Q Consensus 668 ~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 747 (1096)
+..+. ++---+++++|-+ ....+++|..+..+|+|+...
T Consensus 400 iaRPQ--iHGyDl~c~~~vn-------------------------------------~~~~FVSgAdEKVlRvF~aPk-- 438 (764)
T KOG1063|consen 400 IARPQ--IHGYDLTCLSFVN-------------------------------------EDLQFVSGADEKVLRVFEAPK-- 438 (764)
T ss_pred ecccc--cccccceeeehcc-------------------------------------CCceeeecccceeeeeecCcH--
Confidence 11111 1111122333221 122344555556667766541
Q ss_pred cCCceEE-E-EcCCCCCCcccEEEEEEecCCceEEEeecC-CeEEEeeccCCccCCC--Cceeeec--------------
Q 001343 748 DSGQCRL-V-TMPESTDTSSKVVRLLYTNSAVGLLALGSN-GVQKLWKWHRNEQNPS--GKATASA-------------- 808 (1096)
Q Consensus 748 ~~~~~~~-~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g~v~vw~~~~~~~~~~--g~~~~~~-------------- 808 (1096)
.+.. + .+.|. .-....-.|+|..+-+-+.. .-+..=....+..... ....+..
T Consensus 439 ---~fv~~l~~i~g~-----~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 439 ---SFVKSLMAICGK-----CFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred ---HHHHHHHHHhCc-----cccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 1111 0 11110 00000111222111111110 0000000000000000 0000000
Q ss_pred CccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC------CeEEEEEcccceEEEeecCCCCCeeEEEEec
Q 001343 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG------GKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1096)
Q Consensus 809 ~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d------g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 882 (1096)
...+|. + +. .+.| |...|.+++.+|+|+++|++.. -.|++|+..+...+..+.+|.-.|+.++|||
T Consensus 511 ~~tLwP-E----v~-KLYG--HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 511 QNTLWP-E----VH-KLYG--HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred Hhccch-h----hH-Hhcc--CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 011221 0 11 3445 9999999999999999999972 2399999999888889999999999999999
Q ss_pred CCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEccc
Q 001343 883 QDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASK 961 (1096)
Q Consensus 883 ~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~ 961 (1096)
|+++|++.+.|.++.+|....+. .+. ........|+. -|.+..|+||++++++ +.|++|.+|....
T Consensus 583 -dg~~LLsvsRDRt~sl~~~~~~~-----~~e------~~fa~~k~HtR-IIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 583 -DGRYLLSVSRDRTVSLYEVQEDI-----KDE------FRFACLKAHTR-IIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred -CCcEEEEeecCceEEeeeeeccc-----chh------hhhccccccce-EEEEcccCcccceeEEecCCceEEEEeccC
Confidence 99999999999999999986544 000 11233666776 8899999999999999 8999999999988
Q ss_pred c--eeccccccCCCCCCCceEEEEee-----CCcEEEEEecCCcEEEEecCCCc-eeE--EEccccccCCCccCCCcccc
Q 001343 962 M--ERIRQWTPQDALSAPISCAVYSC-----NSQLVFATFCDGNIGVFDADTLR-LRC--YIAPSTYLSPSVLNGSQTVY 1031 (1096)
Q Consensus 962 ~--~~~~~~~~~~~~~~~i~~l~~s~-----dg~~la~~~~dg~i~vwd~~~~~-~~~--~~~~~~~~~~~~~~h~~~v~ 1031 (1096)
. +.+..+... .+...|+++++.| .+..+++|.+.|.|.+|....-. ... .......++ ...+|.+.|.
T Consensus 650 ~~d~~i~~~a~~-~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~aV~ 727 (764)
T KOG1063|consen 650 LRDKYISRFACL-KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLC-ATIGPDSAVN 727 (764)
T ss_pred chhhhhhhhchh-ccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccc-cccChHHhhh
Confidence 8 555553211 1388999999976 23378999999999999965111 000 000000011 1123777888
Q ss_pred ceEEEecCC---------CCceEEEEeeCCcEEEEccC
Q 001343 1032 PLVVAAHPL---------EPNQFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 1032 s~~l~~s~~---------d~~~l~s~~~dg~i~vW~v~ 1060 (1096)
.+.|+|. ....|++|++|.+++++++.
T Consensus 728 --rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 728 --RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred --eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 4899973 12246999999999999874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=322.27 Aligned_cols=303 Identities=19% Similarity=0.309 Sum_probs=260.9
Q ss_pred CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccc-ccc----CCC
Q 001343 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI-FKD----VPI 407 (1096)
Q Consensus 333 ~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----h~~ 407 (1096)
.|...++.+.|+.+|.+++|+|-..-++|+|+.|-+.++|++.......+.. ..+++.+ +.+ .+.
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q----------~~lrh~~~~~~~s~~~nk 236 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ----------LVLRHCIREGGKSVPSNK 236 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh----------hhhhhhhhhhcccCCccC
Confidence 4455567778999999999999877679999999999999987411111000 0001100 111 246
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
.|++++|+.+|..||+|+.||.+++|+...+ .+. ++..|+++|.++.|+.+|. +|++++.|+++.+|| .+|..
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LIS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCch-hhh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceE
Confidence 8999999999999999999999999998764 344 5888999999999999999 899999999999999 99999
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
...+.-|..+-..+.|.. + ..+++++.||.|+++.+....+..++.+|.++|.++.|.|.|..|++++. |+++
T Consensus 311 ~q~f~~~s~~~lDVdW~~--~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tl 383 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQS--N-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTL 383 (524)
T ss_pred EEeeeeccCCccceEEec--C-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCee
Confidence 999999999877788853 2 57999999999999999999999999999999999999999999999997 9999
Q ss_pred EEEeCCCCeeeEEEcCcCccceEEEEEeCCC---------CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE
Q 001343 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---------NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1096)
+||+.........+..|.+ .|..+.|+|.| ..+++++.|++|++||+..+.++..+..|.. +|++++|
T Consensus 384 kiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvaf 460 (524)
T KOG0273|consen 384 KIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAF 460 (524)
T ss_pred EeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEe
Confidence 9999999999999999988 78889999865 4689999999999999999999999987765 9999999
Q ss_pred eCCCCEEEEEECCCcEEEEEcCCC
Q 001343 638 SKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 638 s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+|+|+++|+|+.||.|.+|+..++
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccch
Confidence 999999999999999999999777
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=325.42 Aligned_cols=474 Identities=14% Similarity=0.214 Sum_probs=355.5
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
|.+.|.||.|+|... .+.++-..|.|.|||.++...+.+ +.-..-+|.+..|-+-.++++
T Consensus 12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 888999999999999 566777999999999999888765 333566899999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~~~ 500 (1096)
+|+.|..|+||+.++++.++ .+.+|.+-|.+++.+|... +++|+|+|-+|++|| ..-.+.++|.||+..|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 6889999999999999999 899999999999999 4456889999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC--CEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--SRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~--~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
+|+|. |.+.+++++-|++|++|.+....+.+++.+|...|+++.+-+-| .+|++++. |..+++||..+..+++
T Consensus 147 ~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 99997 45789999999999999999999999999999999999998755 58999886 9999999999999999
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
++.||.. .|+.++|+|.-..+++|++||+++||+..+.+...++..... +++|++-.+.++.+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 899999999999999999999999999999888887766544 8999999999999999999888765 22
Q ss_pred CCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCc
Q 001343 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1096)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i 738 (1096)
-.. ...+.+++.|+.+-+..+.- . ..+.+ +.+.++
T Consensus 298 gre------------------eP~vsMd~~gKIiwa~~~ei-~---------------------~~~~k---s~~~~~-- 332 (794)
T KOG0276|consen 298 GRE------------------EPAVSMDSNGKIIWAVHSEI-Q---------------------AVNLK---SVGAQK-- 332 (794)
T ss_pred cCC------------------CCceeecCCccEEEEcCcee-e---------------------eeece---eccCcc--
Confidence 211 11245555555442221110 0 00000 000000
Q ss_pred cceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcc
Q 001343 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1096)
Q Consensus 739 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~ 818 (1096)
++. .++...+....-..-.-....++-+|+|+ +++.+.||...||.--. |.
T Consensus 333 ---ev~----DgErL~LsvKeLgs~eiyPq~L~hsPNGr-fV~VcgdGEyiIyTala-----------------~R---- 383 (794)
T KOG0276|consen 333 ---EVT----DGERLPLSVKELGSVEIYPQTLAHSPNGR-FVVVCGDGEYIIYTALA-----------------LR---- 383 (794)
T ss_pred ---ccc----CCccccchhhhccccccchHHhccCCCCc-EEEEecCccEEEEEeee-----------------hh----
Confidence 000 01111111000000111234567789998 77788888888886210 10
Q ss_pred ccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeE
Q 001343 819 LLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (1096)
Q Consensus 819 ~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i 897 (1096)
+. ..+.-....|++|....|+-. ++.|+++ ++++..++++..-. +-.+ - +|.+|... .++.+
T Consensus 384 ----nK-----~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~---~e~i-~-gg~Llg~~-ss~~~ 446 (794)
T KOG0276|consen 384 ----NK-----AFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS---AEGI-F-GGPLLGVR-SSDFL 446 (794)
T ss_pred ----hc-----ccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc---eeee-c-CCceEEEE-eCCeE
Confidence 00 234456688999955556554 7889998 67877777743322 2222 2 45455544 45569
Q ss_pred EEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcc
Q 001343 898 HIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 960 (1096)
Q Consensus 898 ~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~ 960 (1096)
++||.+++. .++..+. ....+.|+.+|.+++.+.|....|+-+.
T Consensus 447 ~fydW~~~~---------------lVrrI~v----~~k~v~w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 447 CFYDWESGE---------------LVRRIEV----TSKHVYWSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred EEEEcccce---------------EEEEEee----ccceeEEecCCCEEEEEecCceeEEEec
Confidence 999999988 4444444 5578999999999988777776666553
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=327.31 Aligned_cols=254 Identities=22% Similarity=0.309 Sum_probs=231.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
|.+.+|..+.||+|++.||||+.+|.++||+..+...+. +|.||.+.|.++.|+|....+.++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456789999999999999999999999999999875554 789999999999999984222799999999999999 6
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
+..++..+.+|...|..++|+| +|++|++++.|.+-++||+++........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 6689999999999999999998 6689999999999999999999999999999999999999999999999998
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CC
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EG 641 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 641 (1096)
|..-++||+++|+++..+.+|.+ .|..+.|+|+|..+++|+.|++++|||++....+.++..|.. -|..+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 88899999999999999999988 899999999999999999999999999999999999988876 899999999 88
Q ss_pred CEEEEEECCCcEEEEEcCCCccccccccC
Q 001343 642 NLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 642 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
.+|++++.|++++||...+. .+++.+.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaG 428 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAG 428 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcC
Confidence 99999999999999987665 34443333
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=299.47 Aligned_cols=290 Identities=17% Similarity=0.253 Sum_probs=263.3
Q ss_pred EEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
.++|+ |.+.|.++.|++|.+ .+++++.||.+.|||.-+....+. +.-...+|..++|+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP 107 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP 107 (343)
T ss_pred EEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence 46666 999999999999999 599999999999999887765543 334678999999999
Q ss_pred CCCEEEEEECCCeEEEEEccCC--C-ccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGS--N-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~--~-~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 492 (1096)
.|+++|+|+.|+...||++.+. + ..+..+++.+|.+.+.|+.|.+|+. |+|+|.|.+..+|| .+|+.+..|.|
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence 9999999999999999999864 1 2233447899999999999999774 99999999999999 99999999999
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
|.+.|.++++.|. +++.+++|+.|+..++||++.+.....+.+|...|+++.|.|+|.-+++|+. |+..++||++
T Consensus 185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlR 259 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLR 259 (343)
T ss_pred CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeec
Confidence 9999999999886 6789999999999999999999999999999999999999999999999997 9999999999
Q ss_pred CCeeeEEEcCcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCC
Q 001343 573 EGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1096)
Q Consensus 573 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1096)
..+.+..|..... ..+++++|+..|++|++|..|.++.+||.-.++.+..+.+|.+ .|.++..+|||..+++|+.|.
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhH
Confidence 9999888875432 3788999999999999999999999999999999999998877 999999999999999999999
Q ss_pred cEEEEE
Q 001343 652 GFKILA 657 (1096)
Q Consensus 652 ~i~iwd 657 (1096)
.++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=299.02 Aligned_cols=295 Identities=23% Similarity=0.322 Sum_probs=255.7
Q ss_pred Eeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 339 VSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 339 ~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
-++. |++.|+.++..+.+..++.+++.|.+|.+|++.......-. ..+.+.||...|..++.++|
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~d 74 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSD 74 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccC
Confidence 3455 99999999999998889999999999999999765322211 11248999999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC--CC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH--EA 495 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--~~ 495 (1096)
|++.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ .|++|+.|++|++|+.-|.+..++..+ .+
T Consensus 75 g~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred CceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 9999999999999999999997666 5889999999999999999 899999999999999777777777654 78
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
.|.|+.|+|..+..+|++++.|+++++||+++.+....+.+|.+.++.+++||||...++|+. ++.+.+||++.++
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k 225 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGK 225 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCc
Confidence 899999999877789999999999999999999999999999999999999999999999987 9999999999999
Q ss_pred eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC-------CCCCccEEEEeCCCCEEEEEE
Q 001343 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-------GLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
.+..+.... .|.+++|+|+...|+.+. +..|+|||+.++..+..+.... ......+++|++||..|++|.
T Consensus 226 ~lysl~a~~--~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 226 NLYSLEAFD--IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred eeEeccCCC--eEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 988776543 799999999866655554 4569999999988877665332 122456789999999999999
Q ss_pred CCCcEEEEEcC
Q 001343 649 ADNGFKILANA 659 (1096)
Q Consensus 649 ~dg~i~iwd~~ 659 (1096)
.|+.|++|.+.
T Consensus 303 td~~irv~qv~ 313 (315)
T KOG0279|consen 303 TDNVIRVWQVA 313 (315)
T ss_pred cCCcEEEEEee
Confidence 99999999874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=322.21 Aligned_cols=572 Identities=14% Similarity=0.165 Sum_probs=420.1
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCe
Q 001343 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1096)
Q Consensus 350 v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~ 429 (1096)
..|..-|+.++++.+.+.+..+||..+-..+.. -..+...|+|++=..+ ++.+|+. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecC-cE
Confidence 555555666788888999999999987666542 2346788999986544 5555543 46
Q ss_pred EEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-ceE----EEeeCCCCCeEEEEee
Q 001343 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKL----FNFEGHEAPVYSICPH 503 (1096)
Q Consensus 430 i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~----~~~~~~~~~v~~~~~~ 503 (1096)
|.+|- .|+.++. .+.+|.+.|.-+.- -|. .++++..++.+.+|+ ..+ ..+ ..++.....|+++. |
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 76664 3444443 45577777877764 366 799999999999999 553 221 11222233377774 5
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
|..--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|.|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 5544467899999999999999999999999999999999999998889999987 999999999999999999877
Q ss_pred CccceEEEEEeCCCCEE-EEEEcCCeEEEEeCCCCeEEEEee-cCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 584 RKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTSTD-AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 584 ~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+ .|+.++|..||+.+ ++|+..|.+.+||++..+.+..+. .| .+.|....|.|....+++++.|+.+++|-.+++
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 55 89999999999755 556677999999999888877766 34 348999999999999999999999999876654
Q ss_pred c---cccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCc
Q 001343 662 L---RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1096)
Q Consensus 662 ~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i 738 (1096)
. +.++.-.+|. .|..++.|- -..|..+.+++.|++.
T Consensus 321 dg~pR~LR~R~GHs-----~Pp~~irfy------------------------------------~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHS-----APPSCIRFY------------------------------------GSQGHFILSAKQDRTL 359 (910)
T ss_pred CCcchheeeccCCC-----CCchheeee------------------------------------ccCcEEEEecccCcch
Confidence 2 3334434443 334455543 1234455777888888
Q ss_pred cceeeeeeecCCceEEEEcCCCCCC-----------------cccEEEEEEecCC----ceEEEee-cCCeEEEeeccCC
Q 001343 739 KPWQLAEIVDSGQCRLVTMPESTDT-----------------SSKVVRLLYTNSA----VGLLALG-SNGVQKLWKWHRN 796 (1096)
Q Consensus 739 ~iw~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~l~~s~~~----~~l~~~~-~dg~v~vw~~~~~ 796 (1096)
+.+++.. ..+...+.. .| -.+|..+++.... ..++++. .+...+.|++...
T Consensus 360 r~fs~~~-----e~~~~~l~~--~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~ 432 (910)
T KOG1539|consen 360 RSFSVIS-----ESQSQELGQ--LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK 432 (910)
T ss_pred hhhhhhH-----HHHhHhhcc--cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence 8887641 111112211 00 0123344433211 1123333 2445555655321
Q ss_pred ccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEee---cCCC
Q 001343 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF---MSPP 872 (1096)
Q Consensus 797 ~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~---~~h~ 872 (1096)
.. |+ |-+... .+.- ....+++++.++.|++.+.|. .|.|-+|++++|-...++ ..|.
T Consensus 433 ~~---G~---------~~L~~~-----~~~~--~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~ 493 (910)
T KOG1539|consen 433 TS---GR---------HVLDPK-----RFKK--DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK 493 (910)
T ss_pred cc---cc---------EEecCc-----cccc--cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcccc
Confidence 11 00 001100 1111 346789999999999999998 699999999999998888 5899
Q ss_pred CCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eec
Q 001343 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE 951 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d 951 (1096)
++|++++... -++.+++++.+|-+.+||..... .+..+.-. ..++.+..+.....++. ..|
T Consensus 494 ~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~---------------l~~~l~l~--~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 494 GEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKV---------------LKKSLRLG--SSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred CceeEEEecC-CCceEEEccCcceEEEEecCCcc---------------eeeeeccC--CCcceeeeeehhhhhhhhcCc
Confidence 9999999988 88999999999999999998765 22233222 26788888888888888 788
Q ss_pred ceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCcccc
Q 001343 952 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1031 (1096)
Q Consensus 952 ~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 1031 (1096)
-.|+++|+.+.+.++.+.+| .+.|++++|||||++|++++.|++|++||+.++.++..+.-. .+..
T Consensus 556 f~I~vvD~~t~kvvR~f~gh---~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~~~ 621 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGH---GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SPCT 621 (910)
T ss_pred eeEEEEEchhhhhhHHhhcc---ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------Ccce
Confidence 99999999999999999886 999999999999999999999999999999999977665522 2445
Q ss_pred ceEEEecCCCCceEEEEeeC-CcEEEEccCC
Q 001343 1032 PLVVAAHPLEPNQFAIGLTD-GSVKVMEPSE 1061 (1096)
Q Consensus 1032 s~~l~~s~~d~~~l~s~~~d-g~i~vW~v~~ 1061 (1096)
.+.|+| +|++|||...| .-|++|.=.+
T Consensus 622 --sls~SP-ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 622 --SLSFSP-NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred --eeEECC-CCCEEEEEEecCceEEEEEchh
Confidence 499999 99999999999 6799997443
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=288.32 Aligned_cols=248 Identities=17% Similarity=0.222 Sum_probs=228.4
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ ++++|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 489999999999999999999999999999999998876555 3566788999999999999 89999999999999
Q ss_pred E-cCC------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC-CCCE
Q 001343 481 E-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSR 552 (1096)
Q Consensus 481 d-~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~ 552 (1096)
+ ... +..+.+.+|.+.+.++.|.. | ..|++++.|.+..+||+++++....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 9 322 34567899999999999965 3 5799999999999999999999999999999999999999 9999
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCc
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1096)
+++|+. |...++||++.+.++++|.+|.. .|++++|.|+|.-|++|++|++.++||++..+.+..+........|
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999998 99999999999999999999998 8999999999999999999999999999999999999887777799
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++++|+..|++|++|..|.++.+||.-.+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc
Confidence 99999999999999999999999997544
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=314.14 Aligned_cols=563 Identities=12% Similarity=0.153 Sum_probs=407.1
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.+.+.|+|++-+.+-- |+| ....|.+|.. |+.+. +++.+|.+.|.-+. +=|.++
T Consensus 74 ~lp~~I~alas~~~~v-y~A---~g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~l 127 (910)
T KOG1539|consen 74 PLPDKITALASDKDYV-YVA---SGNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHL 127 (910)
T ss_pred CCCCceEEEEecCceE-EEe---cCcEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceE
Confidence 3888999999877643 233 3456777764 43332 23666777777664 458899
Q ss_pred EEEECCCeEEEEEccCC-Ccccccee-ecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE
Q 001343 422 GVAFTKHLIQLYSYAGS-NDLRQHSQ-IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~-~~~~~~~~-l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~ 498 (1096)
+++..++.+.||+..++ ........ ++...+.|+++. +|.---..++.|+.+|.+.+|+ .+++.+++++++...|+
T Consensus 128 ia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT 206 (910)
T KOG1539|consen 128 IAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRIT 206 (910)
T ss_pred EEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEeccccccee
Confidence 99999999999999885 22111111 222233377765 4432211688999999999999 99999999999999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
++.-+|.- ..++.|..+|+|.+++++..+.+..+....++|++++|.-||..+++.+. ..|.+.+||++..+.+.
T Consensus 207 ~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~ 281 (910)
T KOG1539|consen 207 AIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLIN 281 (910)
T ss_pred EeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeee
Confidence 99876644 58999999999999999999999999888889999999999998776654 26899999999999888
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC----eEEEEeecCCCCCCccEEEEe-CCCCEEEEEECCCcE
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFS-KEGNLLAVTTADNGF 653 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i 653 (1096)
.....+...+....|-|....+++++.|+.+++|-.+++ ..++.-.+|. .+..++.|. .+|..+.+++.|+++
T Consensus 282 v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs--~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 282 VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS--APPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred eeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCC--CCchheeeeccCcEEEEecccCcch
Confidence 877444447788889999999999999999888866643 3344444554 488999998 689999999999999
Q ss_pred EEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccC
Q 001343 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1096)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 733 (1096)
+.+++.........-..+..... .+++ .+++.. ..+.+...+...........+.++..-
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~-kk~~--~~~~~~-----------------~k~p~i~~fa~~~~RE~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRA-KKVN--VFSTEK-----------------LKLPPIVEFAFENAREKEWDNVITAHK 419 (910)
T ss_pred hhhhhhHHHHhHhhccccccccc-cccc--ccchhh-----------------hcCCcceeeecccchhhhhcceeEEec
Confidence 99887543111110011100000 0000 000000 000001111111111122233344444
Q ss_pred CCCCccceeeeeeecCCceEE-EEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccc
Q 001343 734 VTDKPKPWQLAEIVDSGQCRL-VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (1096)
Q Consensus 734 ~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~ 812 (1096)
.+...+.|+..+...+..... -++.. ....+++++.++-|...+.|.+.|.|.+|++..
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~---~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS----------------- 479 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKK---DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS----------------- 479 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccc---cCcceEEEEEeccCceEEEeccCCeEEEEEccc-----------------
Confidence 456778899874222111111 00111 346789999999999888999999999999754
Q ss_pred cccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEe
Q 001343 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (1096)
Q Consensus 813 w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~ 891 (1096)
|...........|..+|+.++...-++.+++++ +|-+++||.++..++..++- ...++++..+. ....++.+
T Consensus 480 -----Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr-~s~l~a~~ 552 (910)
T KOG1539|consen 480 -----GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHR-VSDLLAIA 552 (910)
T ss_pred -----CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeee-hhhhhhhh
Confidence 222221111123999999999988888888888 89999999988887777753 34678888888 78899999
Q ss_pred eCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceecccccc
Q 001343 892 TEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTP 970 (1096)
Q Consensus 892 ~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~ 970 (1096)
..|-.|+++|+.+.+ .++.+.||.. .|+++.|||||++|++ +.|++|++||+.++.++..+.-
T Consensus 553 ~ddf~I~vvD~~t~k---------------vvR~f~gh~n-ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRK---------------VVREFWGHGN-RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred cCceeEEEEEchhhh---------------hhHHhhcccc-ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec
Confidence 999999999999877 6789999998 9999999999999999 8999999999999999888864
Q ss_pred CCCCCCCceEEEEeeCCcEEEEEecC-CcEEEEecC
Q 001343 971 QDALSAPISCAVYSCNSQLVFATFCD-GNIGVFDAD 1005 (1096)
Q Consensus 971 ~~~~~~~i~~l~~s~dg~~la~~~~d-g~i~vwd~~ 1005 (1096)
..+..++.|||+|.+|||+..| .-|++|.-.
T Consensus 617 ----d~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 617 ----DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ----CCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 7889999999999999999998 669999743
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=312.29 Aligned_cols=541 Identities=15% Similarity=0.184 Sum_probs=381.6
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC---EEEEEEC
Q 001343 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN---YVGVAFT 426 (1096)
Q Consensus 350 v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~---~l~s~~~ 426 (1096)
..|.|.+ ++|.| ....|.+||..+..... .+.||.++|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 4455665 46655 67899999987653332 3899999999999999887 8999999
Q ss_pred CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc-CCc--eEEEeeCCCCCe--EEEE
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGR--KLFNFEGHEAPV--YSIC 501 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~-~~~--~~~~~~~~~~~v--~~~~ 501 (1096)
|+.|++|.+.. +.+.....+.+|...+.|+.-.+ . ...+.+.|+++.+||. ..+ +...++-..+.+ .|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~a~~--~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVVARS--S--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEEEeee--e--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999984 33444456777776666654322 2 2222378999999994 444 222232222222 3555
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCC--CeeeEEeCCCCcEEEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCe-
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGT- 575 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~- 575 (1096)
+.+.++.-.++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++. |..|+||.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecCC
Confidence 555333345566777788888865533 34557889999999999987655 4555554 9999999764221
Q ss_pred --------------------ee----------EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC--eEEEEe
Q 001343 576 --------------------IK----------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTST 623 (1096)
Q Consensus 576 --------------------~~----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~ 623 (1096)
.. ..+.||.+ -|.++.|+|.+..|++++.|.++.+|..... --+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 11 11237877 8999999999999999999999999987654 332222
Q ss_pred ec---CCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCc
Q 001343 624 DA---EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1096)
Q Consensus 624 ~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~ 700 (1096)
.. .+.........|+|+++.+++-+..|..++|...+.
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~--------------------------------------- 348 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK--------------------------------------- 348 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc---------------------------------------
Confidence 21 122235788999999999999999999999972211
Q ss_pred eeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEE
Q 001343 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1096)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 780 (1096)
..|... ..+.| |...|++++|.|.|.+++
T Consensus 349 --------------------------------------~~w~~~----------~~iSG---H~~~V~dv~W~psGeflL 377 (764)
T KOG1063|consen 349 --------------------------------------TFWTQE----------PVISG---HVDGVKDVDWDPSGEFLL 377 (764)
T ss_pred --------------------------------------cceeec----------ccccc---ccccceeeeecCCCCEEE
Confidence 122221 12334 999999999999999999
Q ss_pred EeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC-CeEEEEEc
Q 001343 781 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-GKISLFNM 859 (1096)
Q Consensus 781 ~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d-g~v~iwd~ 859 (1096)
+.+.|.+-|+|---. +.. -|. +-+++ +-|...++|++|-+....+++|.| ..+++|+.
T Consensus 378 svs~DQTTRlFa~wg-------~q~------~wH-EiaRP-------QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWG-------RQQ------EWH-EIARP-------QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA 436 (764)
T ss_pred Eeccccceeeecccc-------ccc------cee-eeccc-------ccccccceeeehccCCceeeecccceeeeeecC
Confidence 999999988876421 110 122 11111 128888999999885555666665 55888865
Q ss_pred cc-------------------------------------------ceE--------------------------------
Q 001343 860 MT-------------------------------------------FKV-------------------------------- 864 (1096)
Q Consensus 860 ~~-------------------------------------------~~~-------------------------------- 864 (1096)
.. |..
T Consensus 437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP 516 (764)
T KOG1063|consen 437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP 516 (764)
T ss_pred cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence 31 000
Q ss_pred -EEeecCCCCCeeEEEEecCCCcEEEEeeCCC-----eEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEE
Q 001343 865 -MTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 938 (1096)
Q Consensus 865 -~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg-----~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 938 (1096)
+..+-+|...|.+++.+| +++++|+++... .|++|+..+-. ..+.+.+|.. .|+.++
T Consensus 517 Ev~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~---------------~~~~L~~HsL-TVT~l~ 579 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWL---------------QVQELEGHSL-TVTRLA 579 (764)
T ss_pred hhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchh---------------hhheecccce-EEEEEE
Confidence 022347888999999999 999999998654 58899887655 4568899998 999999
Q ss_pred EecCCcEEEE-EecceEEEEEcccceec-cccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCC--ceeEEEc
Q 001343 939 FNADQVRMLV-VHETQLAIYDASKMERI-RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL--RLRCYIA 1014 (1096)
Q Consensus 939 fs~dg~~l~~-~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~--~~~~~~~ 1014 (1096)
|||||++|++ +.|+++.+|........ ..+.....|..-|.++.|+||++++||++.|.+|+||....+ +.+..+.
T Consensus 580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a 659 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA 659 (764)
T ss_pred ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc
Confidence 9999999999 99999999998644321 122222234899999999999999999999999999999988 4433322
Q ss_pred cccccCCCccCCCccccceEEEecCCCCc----eEEEEeeCCcEEEEccC
Q 001343 1015 PSTYLSPSVLNGSQTVYPLVVAAHPLEPN----QFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 1015 ~~~~~~~~~~~h~~~v~s~~l~~s~~d~~----~l~s~~~dg~i~vW~v~ 1060 (1096)
-.. ++..|+ +++|.|.+.+ .+++|-+.|.|.+|...
T Consensus 660 ~~~--------~~~aVT--Av~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 660 CLK--------FSLAVT--AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhc--------cCCcee--eEEeeccccccccceEEEEecccEEEEEecc
Confidence 111 677888 4788775433 78999999999999965
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=304.16 Aligned_cols=468 Identities=16% Similarity=0.212 Sum_probs=343.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-...+ .+++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 45589999999999999999999999999999999988877 4666788999999998888 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcC-CCCEEEEEee
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGT 558 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~ 558 (1096)
.+++.+..|..|...|.+++.||.. .++++++.|-+|++||.+.. .+...+.+|.+.|..++|+| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999964 79999999999999999864 45678999999999999998 5678889987
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC--CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
|++|++|.+.+..+..++.+|.. .|+++.+-+-| .++++|++|.+|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999988 89999987744 7999999999999999999999999999987 899999
Q ss_pred EeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCccc
Q 001343 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1096)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~ 716 (1096)
|+|.-.++++|+.||+++||+..+- +....+.-. -..+.+++-.+.+..+
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~g-----leRvW~I~~~k~~~~i------------------------ 284 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNYG-----LERVWCIAAHKGDGKI------------------------ 284 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhcC-----CceEEEEeecCCCCeE------------------------
Confidence 9999999999999999999998765 332222211 2235566555544444
Q ss_pred CCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecC-CeEEEeeccC
Q 001343 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN-GVQKLWKWHR 795 (1096)
Q Consensus 717 ~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g~v~vw~~~~ 795 (1096)
+.|..+|.|.+ .+. . ....+..++.|+.+-+..+. ..+.+-.+..
T Consensus 285 -------------~vG~Deg~i~v-~lg------------------r--eeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~ 330 (794)
T KOG0276|consen 285 -------------AVGFDEGSVTV-KLG------------------R--EEPAVSMDSNGKIIWAVHSEIQAVNLKSVGA 330 (794)
T ss_pred -------------EEeccCCcEEE-Ecc------------------C--CCCceeecCCccEEEEcCceeeeeeceeccC
Confidence 33333333322 111 1 11122233334322222111 1111111110
Q ss_pred CccCCCCceeeecCccccccCccccccccccCCC-cCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCC
Q 001343 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN-LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA 874 (1096)
Q Consensus 796 ~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~-~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~ 874 (1096)
.. ++..|..+.......+ -.--...++-||+|+++++++||.-.||..-.. -..+.+.
T Consensus 331 ~~----------------ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~-----RnK~fG~ 389 (794)
T KOG0276|consen 331 QK----------------EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALAL-----RNKAFGS 389 (794)
T ss_pred cc----------------cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeeh-----hhccccc
Confidence 00 2334443332222100 111223578899999999999999888873111 1123456
Q ss_pred eeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceE
Q 001343 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 954 (1096)
Q Consensus 875 i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i 954 (1096)
-....|++ |.+..++-..++.|+++ +..+ ..+.+.. -....+--.|.+|.+..++.+
T Consensus 390 ~~eFvw~~-dsne~avRes~~~vki~--knfk---------------e~ksi~~-----~~~~e~i~gg~Llg~~ss~~~ 446 (794)
T KOG0276|consen 390 GLEFVWAA-DSNEFAVRESNGNVKIF--KNFK---------------EHKSIRP-----DMSAEGIFGGPLLGVRSSDFL 446 (794)
T ss_pred ceeEEEcC-CCCeEEEEecCCceEEE--ecce---------------ecccccc-----ccceeeecCCceEEEEeCCeE
Confidence 67789999 87788888888889998 3333 1111111 011222233556666788999
Q ss_pred EEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCC
Q 001343 955 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 997 (1096)
Q Consensus 955 ~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg 997 (1096)
++||.++++.++.+.-. ...+.|+.+|.+++.++.|.
T Consensus 447 ~fydW~~~~lVrrI~v~------~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 447 CFYDWESGELVRRIEVT------SKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred EEEEcccceEEEEEeec------cceeEEecCCCEEEEEecCc
Confidence 99999999999988532 56799999999999888774
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=311.98 Aligned_cols=557 Identities=15% Similarity=0.177 Sum_probs=354.3
Q ss_pred CCCceeecCCCce-------------eeecCCCCcceEEee-cCCCceEEEEEcCCCCcEEEEEeC-CCeEEEEecCCCC
Q 001343 314 SAEEVTYSSSRHQ-------------TWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSS-NGEITLWELAMRD 378 (1096)
Q Consensus 314 ~~~~v~~~~~~~~-------------~~~~~~~~~~~~~~l-~h~~~V~~v~fsp~g~~llasg~~-dg~I~iwd~~~~~ 378 (1096)
....|+|+..+.- +|++.... ++..+ .|+..|+|++|+|.++|++-+|+. |-.|.+||+....
T Consensus 80 ~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~--vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~ 157 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG--VVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNS 157 (1080)
T ss_pred ceeEEEEcCCCcEEEecccCCCccceeeeecccc--chhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcc
Confidence 3556666665443 88887533 34444 599999999999999964445554 5578899987655
Q ss_pred eeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEE
Q 001343 379 RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA 458 (1096)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~ 458 (1096)
.....+ -...|..++|+.||.|+++.+. ..|++|.++.++..+....+.+...-.-.+.
T Consensus 158 ~~asnk--------------------iss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr 216 (1080)
T KOG1408|consen 158 SGASNK--------------------ISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLR 216 (1080)
T ss_pred cccccc--------------------cceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccc
Confidence 443211 2457999999999999999875 6999999998875443333444333223333
Q ss_pred EecC-----CCc----EEEEEEeCCCcEEEEEcCCceEEEe-eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC
Q 001343 459 FAYP-----NKL----LCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1096)
Q Consensus 459 ~s~d-----~~~----~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (1096)
|+.- |.. -.++ -+..|.+.-+. +.+.+..+ +..+....|++++ ..+|++|+.+|.|++|+..+.
T Consensus 217 ~n~f~avaCg~gicAestfa-it~qGhLvEFS-sRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~g~vrlFnp~tL 290 (1080)
T KOG1408|consen 217 FNEFLAVACGVGICAESTFA-ITAQGHLVEFS-SRRLLDKWVQCRTTNANCICVS----SRLIACGCAKGMVRLFNPETL 290 (1080)
T ss_pred cchhhhhhhcCcccccceEE-Eecccceeeec-hhhhhhhhhhhhccccceeeee----cceEEEeeccceeeecCcchh
Confidence 3210 000 0111 11123322222 11111111 1223445677763 369999999999999987654
Q ss_pred CeeeEEeC--------------------C----CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE---EEc
Q 001343 529 GSRVDYDA--------------------P----GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR---TYA 581 (1096)
Q Consensus 529 ~~~~~~~~--------------------~----~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~---~~~ 581 (1096)
....++.. . -....++.|++....+.+... |..+++||+++-+.+. .+-
T Consensus 291 ~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~~kvgk~~s~l 366 (1080)
T KOG1408|consen 291 DYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDVNKVGKCSSML 366 (1080)
T ss_pred hhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEeccccccccceeeee
Confidence 33222110 0 013457889988888888876 9999999998754332 223
Q ss_pred CcCccceEEEEEeC-----------CCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 582 GFRKKSNGVVQFDT-----------TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~-----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.|.. .|+.+..-| ....|++++.|++|++|++..+..-..+.-.--......+-+..+...+. .|
T Consensus 367 yHS~-ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~---~d 442 (1080)
T KOG1408|consen 367 YHSA-CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM---HD 442 (1080)
T ss_pred eccc-eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh---hh
Confidence 3333 344333222 12458999999999999998643222221100000111111111110000 01
Q ss_pred CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCcc
Q 001343 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1096)
Q Consensus 651 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 730 (1096)
...-++|-.. ...+ ..+..+++++++|+|++ ||
T Consensus 443 ~~~~~fdka~----~s~~------d~r~G~R~~~vSp~gqh-------------------------------------LA 475 (1080)
T KOG1408|consen 443 ASAGIFDKAL----VSTC------DSRFGFRALAVSPDGQH-------------------------------------LA 475 (1080)
T ss_pred ccCCcccccc----hhhc------CcccceEEEEECCCcce-------------------------------------ec
Confidence 1111121110 0111 11334666776665555 57
Q ss_pred ccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecC---CceEEEeecCCeEEEeeccCCccCCCCceeee
Q 001343 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS---AVGLLALGSNGVQKLWKWHRNEQNPSGKATAS 807 (1096)
Q Consensus 731 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~---~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~ 807 (1096)
+|+.-|++++|++.+ ......+.. |..+|.|+.|+.. .+.|++++.|..|.+||+..
T Consensus 476 sGDr~GnlrVy~Lq~-----l~~~~~~eA---HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r------------ 535 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDLQE-----LEYTCFMEA---HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR------------ 535 (1080)
T ss_pred ccCccCceEEEEehh-----hhhhhheec---ccceeEEEeecCchhhhHhhhhccCCceEEEEeccc------------
Confidence 888889999999973 222223444 9999999999863 45577778899999999743
Q ss_pred cCccccccCccccccccccCCCcCCCeeeeeecCCC--cEEEEec-CCeEEEEEccc-ceEEEeecCC-----CCCeeEE
Q 001343 808 AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND--SYVMSAT-GGKISLFNMMT-FKVMTTFMSP-----PPASTFL 878 (1096)
Q Consensus 808 ~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg--~~la~~~-dg~v~iwd~~~-~~~~~~~~~h-----~~~i~~l 878 (1096)
...+..++.+ |...|+++.|.-+| ..+++++ |..|. |+... ......+..| ...+..+
T Consensus 536 ----------ny~l~qtld~--HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 536 ----------NYDLVQTLDG--HSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred ----------ccchhhhhcc--cccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEe
Confidence 1122225666 99999999998877 5556655 54443 44322 1112223222 2467899
Q ss_pred EEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCC--CCCceEEEecCCcEEEE-EecceEE
Q 001343 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTP--TGDTRVQFNADQVRMLV-VHETQLA 955 (1096)
Q Consensus 879 ~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~v~~v~fs~dg~~l~~-~~d~~i~ 955 (1096)
+..| ..+++++++.|..|+||++++++ ..+.+.|... +....+...|.|.++|+ +.|++|.
T Consensus 603 ~Vdp-~~k~v~t~cQDrnirif~i~sgK---------------q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 603 AVDP-TSKLVVTVCQDRNIRIFDIESGK---------------QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred eeCC-CcceEEEEecccceEEEeccccc---------------eeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 9999 89999999999999999999998 4455555443 46777888999999999 8999999
Q ss_pred EEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCC
Q 001343 956 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 956 iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~ 1006 (1096)
++|..+|+|+.++.+| ...|+.+.|++|.++|++++.||.|.||.+..
T Consensus 667 ~~Df~sgEcvA~m~GH---sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMTGH---SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEeccchhhhhhcCc---chheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999999987 89999999999999999999999999999864
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=278.84 Aligned_cols=281 Identities=16% Similarity=0.262 Sum_probs=240.4
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
+||+++.|.+|++|...+|.+.++ +....+.|+.+...||+++||+|+. ..|++||+.++
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~ 71 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSN 71 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCC
Confidence 899999999999999999999875 4446789999999999999999876 58999999998
Q ss_pred CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC
Q 001343 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 517 (1096)
+.. ...++.+|.+.|+.+.|..+|+ .+++||+||+++||| ..-.+.+.++ |..+|+++..+| +...|++|..+
T Consensus 72 np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp--nQteLis~dqs 145 (311)
T KOG0315|consen 72 NPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP--NQTELISGDQS 145 (311)
T ss_pred CCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC--CcceEEeecCC
Confidence 764 4447899999999999999999 899999999999999 6644444444 779999999988 44689999999
Q ss_pred CeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC------eeeEEEcCcCccceEE
Q 001343 518 GKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TIKRTYAGFRKKSNGV 590 (1096)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~------~~~~~~~~~~~~~i~~ 590 (1096)
|.|++||+....+...+.... ..|.++.+.|||.+++++.. .|..++|++-+. +++..++.|.. .+..
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il~ 220 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-HILR 220 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-eEEE
Confidence 999999999887776655443 48999999999999999886 999999998654 35666788877 7778
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEeCCCC-eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccccccc
Q 001343 591 VQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (1096)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 669 (1096)
+.++|++++|++++.|.+++||+.++. +....+.++ ...+..++||.||.+|++++.|+.+++|++..+ +..+...
T Consensus 221 C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy~ 297 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQYQ 297 (311)
T ss_pred EEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccC-ceeeecC
Confidence 999999999999999999999999988 333444444 458999999999999999999999999999998 6666677
Q ss_pred CCCc
Q 001343 670 NPPF 673 (1096)
Q Consensus 670 ~~~~ 673 (1096)
+|..
T Consensus 298 gh~K 301 (311)
T KOG0315|consen 298 GHHK 301 (311)
T ss_pred Cccc
Confidence 6644
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=308.73 Aligned_cols=559 Identities=16% Similarity=0.255 Sum_probs=392.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+...+..|..++|+|..-+++++-..|.|++||..-+.++. .+..|.++|..++|+|.+. +++||++|..|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 45567889999999999999999999999999999998887 5788999999999999999 999999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.+.+++.++.||-..|..+.||+. -.+|+++|.|.+|+||++.+..++..+.+|++.|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 999999999999999999999984 479999999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEeCCCC-----------------------------eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEE
Q 001343 561 DGDSFLVEWNESEG-----------------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~-----------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 611 (1096)
|.+|++||+..- -....+.||.. .|+-++|+|.-..|++|++|..|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 999999998621 12244567766 7888999999999999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCe
Q 001343 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1096)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 691 (1096)
|.+...+....-...+|.+.|.++-|+|...++++.+.|++|++||+... ..+++++...+ ..+.++.+|..++
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrend-----RFW~laahP~lNL 306 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRREND-----RFWILAAHPELNL 306 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCC-----eEEEEEecCCcce
Confidence 99987665554444455669999999999999999999999999999766 55666654433 4667899999999
Q ss_pred EEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEE
Q 001343 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1096)
Q Consensus 692 lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1096)
++++-..+...+....... ... -.++.++..- |..|+-+|+.+ ........+......-.++.++.
T Consensus 307 fAAgHDsGm~VFkleRErp-a~~--------v~~n~LfYvk--d~~i~~~d~~t---~~d~~v~~lr~~g~~~~~~~sms 372 (1202)
T KOG0292|consen 307 FAAGHDSGMIVFKLERERP-AYA--------VNGNGLFYVK--DRFIRSYDLRT---QKDTAVASLRRPGTLWQPPRSLS 372 (1202)
T ss_pred eeeecCCceEEEEEcccCc-eEE--------EcCCEEEEEc--cceEEeeeccc---cccceeEeccCCCcccCCcceee
Confidence 9998887776663322111 001 1122222232 57888888875 22222223332111346889999
Q ss_pred EecCCceEEEeec--CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEe
Q 001343 772 YTNSAVGLLALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (1096)
Q Consensus 772 ~s~~~~~l~~~~~--dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~ 849 (1096)
|+|....++.++. +|...++.+....- +. ..+ +... ......++-.+.++-.+..-
T Consensus 373 YNpae~~vlics~~~n~~y~L~~ipk~~~---~~------------~~~---~~~~----k~tG~~a~fvarNrfavl~k 430 (1202)
T KOG0292|consen 373 YNPAENAVLICSNLDNGEYELVQIPKDSD---GV------------SDG---KDVK----KGTGEGALFVARNRFAVLDK 430 (1202)
T ss_pred eccccCeEEEEeccCCCeEEEEEecCccc---cc------------CCc---hhhh----cCCCCceEEEEecceEEEEe
Confidence 9997765555432 56777777644211 00 000 0001 11223333333333222222
Q ss_pred cCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCC
Q 001343 850 TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGK 929 (1096)
Q Consensus 850 ~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 929 (1096)
++..+.+-++.+ +..+.+... .....|-+.. .|.+|+.. ...|.++|+.... .+..+..
T Consensus 431 ~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~~--~~~v~lfdvQq~~---------------~~~si~~- 489 (1202)
T KOG0292|consen 431 SNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLRS--PDSVTLFDVQQKK---------------KVGSIKV- 489 (1202)
T ss_pred cCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEEc--CCeEEEEEeecce---------------EEEEEec-
Confidence 245566666533 333333222 2344555555 66655543 3459999998776 2222222
Q ss_pred CCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCc-
Q 001343 930 TPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR- 1008 (1096)
Q Consensus 930 ~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~- 1008 (1096)
+.+..+.||+|..+++.-.-++|.|.+.+ .+.+..+.. .-.|.+-+|..+|-+|.+... .|+ |-+.+|.
T Consensus 490 --s~vkyvvws~dm~~vAll~Kh~i~i~~kk-L~l~~sihE----tiriksgawde~gVfiYtT~n--Hik-Yal~~GD~ 559 (1202)
T KOG0292|consen 490 --SKVKYVVWSNDMSRVALLSKHTITIADKK-LELLCSIHE----TIRIKSGAWDEDGVFIYTTLN--HIK-YALENGDS 559 (1202)
T ss_pred --CceeEEEEcCccchhhhcccceEEEEecc-hhheecchh----eeEeeeceeccCceEEEEehh--hhh-hhhccCCc
Confidence 37889999999999888566888888765 222233321 556788889888888776543 233 3444433
Q ss_pred -eeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCC
Q 001343 1009 -LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1009 -~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
++..+. .+++. .+. .|+.+..-..|+.+.+..|.--|
T Consensus 560 GIikTLd-------------~~iyi--tkv---~gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 560 GIIKTLD-------------KPIYI--TKV---KGNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred ceEEecc-------------cceEE--EEe---eCCEEEEEecCCCeEEEeechHH
Confidence 222211 13442 222 47788888888888888876655
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=293.86 Aligned_cols=288 Identities=20% Similarity=0.334 Sum_probs=264.2
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
....+|..+|+.+-|+|+-. ++|+++.|++|++||+.+|+.... ++||.++|..|+|+..
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~~a~ 161 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISFDAS 161 (406)
T ss_pred hhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEEecC
Confidence 34456999999999999988 899999999999999999998654 8999999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~ 496 (1096)
|++||+++.|-.+++||.++. ....+.+.+|...|.+++|-|.|. +|++++.|.+|+.|+ .+|.+++++.+|...
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~ew 237 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSEW 237 (406)
T ss_pred ccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchHh
Confidence 999999999988999999863 333336889999999999999998 999999999999999 999999999999999
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC---------------CCEEEEEeeccC
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD---------------GSRLFSCGTSKD 561 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---------------~~~l~~~~~~~~ 561 (1096)
|..+.. ..||.++++++.|.++++|-+.++++...+..|..+|-+++|-|. +.++.+++.
T Consensus 238 vr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr--- 312 (406)
T KOG0295|consen 238 VRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR--- 312 (406)
T ss_pred EEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc---
Confidence 999887 458899999999999999999999999999999999999999764 246777765
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
|+.|++||+.++.++.++.+|.+ .|..++|+|.|++|+++.+|+++++||++++++...+..|.+ -|+++.|+.+.
T Consensus 313 -DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh~~~ 388 (406)
T KOG0295|consen 313 -DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFHKTA 388 (406)
T ss_pred -cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecCCCC
Confidence 99999999999999999999988 899999999999999999999999999999999999998877 89999999999
Q ss_pred CEEEEEECCCcEEEEEc
Q 001343 642 NLLAVTTADNGFKILAN 658 (1096)
Q Consensus 642 ~~l~~~~~dg~i~iwd~ 658 (1096)
.++++|+-|.++++|.-
T Consensus 389 p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceEEeccccceeeeeec
Confidence 99999999999999963
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=303.88 Aligned_cols=336 Identities=21% Similarity=0.301 Sum_probs=272.2
Q ss_pred CCCCceeecCCccHHHHHhhcCCCCCCCceeecCCCce-------eeecCCCC----cceEEee--cCCCceEEEEEcCC
Q 001343 289 PPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQ-------TWSLDDLP----RTVAVSL--HQGSTVISMDFHPS 355 (1096)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~----~~~~~~l--~h~~~V~~v~fsp~ 355 (1096)
+-..+.+||++........+.........+.++...-. .|. +++. .+.+++- +-+..|..|.|.|+
T Consensus 29 ~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~-~dp~~~~~tKf~h~s~NKvkc~V~~v~WtPe 107 (464)
T KOG0284|consen 29 PVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYL-DDPSSAFTTKFVHTSSNKVKCPVNVVRWTPE 107 (464)
T ss_pred hhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhcc-CCcccccccceEeccccccccceeeEEEcCC
Confidence 33467888888877766665544321122222211111 333 2222 2222221 24568999999999
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEc
Q 001343 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSY 435 (1096)
Q Consensus 356 g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~ 435 (1096)
|++ |++|+..|.+.+|+..+-. ++ .++..|.+.|.++.||++|.++++|+.+|.|++|+.
T Consensus 108 GRR-Lltgs~SGEFtLWNg~~fn------FE-------------tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 108 GRR-LLTGSQSGEFTLWNGTSFN------FE-------------TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred Cce-eEeecccccEEEecCceee------HH-------------HHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 996 8899999999999974311 11 237789999999999999999999999999999997
Q ss_pred cCCCccccceeeccc-ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEE
Q 001343 436 AGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFS 513 (1096)
Q Consensus 436 ~~~~~~~~~~~l~~h-~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 513 (1096)
.-.. ++ .+.+| ...|++++|+|.+. .+++|+.||+|+||| ...+....+.||.-.|.+++|+|.. .+|++
T Consensus 168 nmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k--gLias 239 (464)
T KOG0284|consen 168 NMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK--GLIAS 239 (464)
T ss_pred chhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc--ceeEE
Confidence 7543 22 24444 49999999999888 899999999999999 8888888999999999999999965 59999
Q ss_pred EECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEE
Q 001343 514 TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593 (1096)
Q Consensus 514 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 593 (1096)
|+.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.++++++|.. .+.++.|
T Consensus 240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~W 314 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYRGHKK-DVTSLTW 314 (464)
T ss_pred ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhhcchh-hheeecc
Confidence 999999999999999999999999999999999999999999998 99999999999999999999998 8899999
Q ss_pred eCC-CCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 594 DTT-QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 594 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+|- ...|.+|+.||.|..|.+...+++..+. ..+...|++++|+|=|.+|++|+.|.++++|.-.
T Consensus 315 hP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 315 HPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 995 4677889999999999998666665554 3345599999999999999999999999999753
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=278.24 Aligned_cols=525 Identities=17% Similarity=0.211 Sum_probs=379.9
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--------cEEEEE-
Q 001343 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--------LIKVWE- 481 (1096)
Q Consensus 411 ~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--------~i~iwd- 481 (1096)
.+-+-|.|..+.-.. +.+.+++++..... -+.+|...|.|++.+||.- .+++|-.-| .+++||
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 356677777665432 35667777552211 3679999999999999876 677665544 599999
Q ss_pred cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE--ECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE-EEee
Q 001343 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST--AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF-SCGT 558 (1096)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~-~~~~ 558 (1096)
.+-..+..+......|.+++|++...|.++... +.+..+.+||...+.........+..+....|+|.+..++ +++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 888888888878888999999998888777765 4456789999998877777777777899999999766554 554
Q ss_pred ccCCCCeEEEEeCCCCeeeEE---EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 559 SKDGDSFLVEWNESEGTIKRT---YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
.+.++.|+.+.+...++ |..+....+.+++|.++|. +++|..+|.|.||+..+.+..+....|. +.|.++
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L 293 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSL 293 (626)
T ss_pred ----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC--CceEEE
Confidence 89999999998876554 5566666899999999875 7899999999999998877777666554 489999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcc
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~ 715 (1096)
+.-.+|.+|- |+.|..|..|| ...+.++..+ .+...++++.++-...+ .+
T Consensus 294 ~~lr~GtllS-GgKDRki~~Wd--~~y~k~r~~e---lPe~~G~iRtv~e~~~d-i~----------------------- 343 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKDRKIILWD--DNYRKLRETE---LPEQFGPIRTVAEGKGD-IL----------------------- 343 (626)
T ss_pred EEecCccEee-cCccceEEecc--cccccccccc---CchhcCCeeEEecCCCc-EE-----------------------
Confidence 9999997766 99999999999 2213333322 22234455544432222 11
Q ss_pred cCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccC
Q 001343 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 795 (1096)
Q Consensus 716 ~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~ 795 (1096)
.|...+.|-.=.++ .+ ..+...| |......++.+|+...+++++.|+.+++|+-.
T Consensus 344 ---------------vGTtrN~iL~Gt~~----~~--f~~~v~g---h~delwgla~hps~~q~~T~gqdk~v~lW~~~- 398 (626)
T KOG2106|consen 344 ---------------VGTTRNFILQGTLE----NG--FTLTVQG---HGDELWGLATHPSKNQLLTCGQDKHVRLWNDH- 398 (626)
T ss_pred ---------------EeeccceEEEeeec----CC--ceEEEEe---cccceeeEEcCCChhheeeccCcceEEEccCC-
Confidence 22211222221221 11 1123344 88899999999999999999999999999821
Q ss_pred CccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCC
Q 001343 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA 874 (1096)
Q Consensus 796 ~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~ 874 (1096)
--+|+.. -..++.|+.|.|.| .+|.|. .|...+.|..+...+..-.. ..+
T Consensus 399 --------------k~~wt~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ 449 (626)
T KOG2106|consen 399 --------------KLEWTKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQ 449 (626)
T ss_pred --------------ceeEEEE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCc
Confidence 1123321 35678899999999 889998 79999999988555544434 889
Q ss_pred eeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eecce
Q 001343 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQ 953 (1096)
Q Consensus 875 i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~ 953 (1096)
+++++|+| +|.+||+|+.|+.|.||.++.+. . .-..+....+ +.|+.+.||+|++++.+ +.|-.
T Consensus 450 ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g-~----------~y~r~~k~~g---s~ithLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 450 LSVVRYSP-DGAFLAVGSHDNHIYIYRVSANG-R----------KYSRVGKCSG---SPITHLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred eEEEEEcC-CCCEEEEecCCCeEEEEEECCCC-c----------EEEEeeeecC---ceeEEeeecCCCceEEeccCceE
Confidence 99999999 99999999999999999998765 0 0011223333 38999999999999999 89999
Q ss_pred EEEEEcccceeccc--------------c-ccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccc
Q 001343 954 LAIYDASKMERIRQ--------------W-TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTY 1018 (1096)
Q Consensus 954 i~iwd~~~~~~~~~--------------~-~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~ 1018 (1096)
|..|....-+.+.. + ..+.++...|..++-+.+.+++|+|...|.|++|...=-+.+.- ..
T Consensus 515 iLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~----~h 590 (626)
T KOG2106|consen 515 ILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP----SH 590 (626)
T ss_pred EEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccc----ce
Confidence 99994322111111 0 01111366777888888999999999999999998764433221 11
Q ss_pred cCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccC
Q 001343 1019 LSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 1019 ~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~ 1060 (1096)
...+ |++.|. +++|.. +...|++.+.|.+|..|++.
T Consensus 591 e~~g---hs~~vt--~V~Fl~-~d~~li~tg~D~Si~qW~lv 626 (626)
T KOG2106|consen 591 EYGG---HSSHVT--NVAFLC-KDSHLISTGKDTSIMQWRLV 626 (626)
T ss_pred eecc---ccceeE--EEEEee-CCceEEecCCCceEEEEEeC
Confidence 2234 999999 699998 67778877799999999873
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=280.46 Aligned_cols=289 Identities=15% Similarity=0.219 Sum_probs=248.8
Q ss_pred EEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
+.+|. |+++|.+++.+|+.+ ++|||+.|..-.||++.+|+.... +.+|+..|+|+.||.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSFSH 116 (399)
T ss_pred eeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEEcc
Confidence 44554 999999999999777 899999999999999999997654 889999999999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
||.+||||+.+|.|+||+..++.... .+...-..|.-+.|+|.+. .|+.|+.||.+.+|. .++...+.+.||..
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNS 191 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence 99999999999999999999987665 3545677899999999888 999999999999999 66688889999999
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
++++=.|.| +|+.++++..||+|++|+..++++....... .....++.++..+..++.|.. ++.+++-+..+|
T Consensus 192 ~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~~sg 265 (399)
T KOG0296|consen 192 PCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNNGSG 265 (399)
T ss_pred CcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEccccc
Confidence 999999977 6899999999999999999999988877643 336788999999999999987 899999999999
Q ss_pred eeeEEEcC--------cCc--cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEE
Q 001343 575 TIKRTYAG--------FRK--KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1096)
Q Consensus 575 ~~~~~~~~--------~~~--~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1096)
+.+....+ +.. ..+..+.++..-.+.++|+-||+|.|||+....+........ .|..+.|-+ ..+|
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~-t~~l 341 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLN-TDYL 341 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcC-cchh
Confidence 98887764 111 123334455555778999999999999998877777766543 699999998 7899
Q ss_pred EEEECCCcEEEEEcCCC
Q 001343 645 AVTTADNGFKILANAIG 661 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~~~ 661 (1096)
++++.+|.|+.||.++|
T Consensus 342 ~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 342 LTACANGKVRQWDARTG 358 (399)
T ss_pred eeeccCceEEeeecccc
Confidence 99999999999999888
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=305.37 Aligned_cols=472 Identities=17% Similarity=0.224 Sum_probs=330.8
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
....|..++|+|... .+.++-..|.|++||..-+.++.. |.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 456899999999998 688888999999999998887754 889999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~ 501 (1096)
+|+.|-.|+||+.++.+++. ++.||-+.|..+.|++.-. .|+|+|+|.+|+||+ .+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999988776 6889999999999999999 899999999999999 99999999999999999999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCC---------------------------e--eeEEeCCCCcEEEEEEcCCCCE
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG---------------------------S--RVDYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------------------~--~~~~~~~~~~i~~l~~s~~~~~ 552 (1096)
|+|.. ..++++|-|.+||+||+.... . ...+.+|...|+-++|+|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99976 589999999999999975210 1 1245678889999999999999
Q ss_pred EEEEeeccCCCCeEEEEeCCCCe--eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCC
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
+++|+. |..|++|.+...+ .+.+..+|.+ .|.++-|+|..+.+++.++|++|+|||+.....++++.....
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-- 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-- 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--
Confidence 999987 9999999986543 4567789988 899999999999999999999999999999999999976655
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCCCc---------------ccccccc-----------CCCcccccCcceeEE
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGL---------------RSLRAVE-----------NPPFEALRTPIESVA 684 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~-----------~~~~~~~~~~v~~~~ 684 (1096)
..+.++.+|..+++++|-+.| +.+|.+.... +.++.+. -........++.++.
T Consensus 294 RFW~laahP~lNLfAAgHDsG-m~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~sms 372 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAGHDSG-MIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLS 372 (1202)
T ss_pred eEEEEEecCCcceeeeecCCc-eEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceee
Confidence 889999999999888775544 4455443110 0011110 001111235677888
Q ss_pred eecCCCeEEecCCCCceeEeccC---------CCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEE
Q 001343 685 LKVSASSAVSSGTPANCKVERSS---------PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV 755 (1096)
Q Consensus 685 ~s~~g~~lv~~~s~~~~~~~~~~---------~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 755 (1096)
++|....+..+.+.+...++.-. .......-.|....|-...++.+-.-.+..+.+-++.. ...+.+
T Consensus 373 YNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N----~vtkkl 448 (1202)
T KOG0292|consen 373 YNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKN----KVTKKL 448 (1202)
T ss_pred eccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccc----hhhhcc
Confidence 88887666444333333331100 00011111122222222222221111122233323221 111111
Q ss_pred EcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCee
Q 001343 756 TMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP 835 (1096)
Q Consensus 756 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~ 835 (1096)
..+ .....+.+..+|. ++..+. ..|.+|++.. ++.+. .+ .-..|.
T Consensus 449 ~~~------~~~~~IF~ag~g~-lll~~~-~~v~lfdvQq----------------------~~~~~-si----~~s~vk 493 (1202)
T KOG0292|consen 449 LLP------ESTDDIFYAGTGN-LLLRSP-DSVTLFDVQQ----------------------KKKVG-SI----KVSKVK 493 (1202)
T ss_pred cCc------ccccceeeccCcc-EEEEcC-CeEEEEEeec----------------------ceEEE-EE----ecCcee
Confidence 111 1333444555554 222222 3556666532 22211 11 245678
Q ss_pred eeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEe
Q 001343 836 CIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (1096)
Q Consensus 836 ~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~ 891 (1096)
-++||+|..++|.-+..+|.|.+. ..+.+.++. ..-.|.+-+|.. +|-++.+.
T Consensus 494 yvvws~dm~~vAll~Kh~i~i~~k-kL~l~~sih-Etiriksgawde-~gVfiYtT 546 (1202)
T KOG0292|consen 494 YVVWSNDMSRVALLSKHTITIADK-KLELLCSIH-ETIRIKSGAWDE-DGVFIYTT 546 (1202)
T ss_pred EEEEcCccchhhhcccceEEEEec-chhheecch-heeEeeeceecc-CceEEEEe
Confidence 899999999999999899999985 445666552 223566778877 66555444
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=282.96 Aligned_cols=293 Identities=17% Similarity=0.270 Sum_probs=261.7
Q ss_pred cceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 335 ~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
-++.+.+. |.+.|.|+++.|... ++++|+.|++|+|||+.+|+...+ +.||...|..++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~va 200 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVA 200 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeee
Confidence 34455555 999999999999988 799999999999999999998765 899999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC
Q 001343 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1096)
Q Consensus 414 ~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 492 (1096)
+|+--.||++++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.++++|| .+...+..+.|
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecC
Confidence 99999999999999999999999988888 5789999999999999988 999999999999999 88899999999
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
|..+|.++.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++.+|....+++++ ...|+-|++.
T Consensus 276 H~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~p 348 (460)
T KOG0285|consen 276 HTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKLP 348 (460)
T ss_pred CCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccCC
Confidence 99999999997643 5799999999999999999999999999999999999999999999987 5689999999
Q ss_pred CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee---cC---CCCCCccEEEEeCCCCEEEE
Q 001343 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD---AE---GGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~---~~~~~v~~~~~s~~~~~l~~ 646 (1096)
.|..+..+.+|.. .+.+++.+.| ..+++|+++|.+.+||.++|...+... .. .....|.+.+|...|..|++
T Consensus 349 ~g~f~~nlsgh~~-iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit 426 (460)
T KOG0285|consen 349 EGEFLQNLSGHNA-IINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT 426 (460)
T ss_pred ccchhhccccccc-eeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence 9999999999988 8888888776 488999999999999999876554442 11 12236889999999999999
Q ss_pred EECCCcEEEEEcCCC
Q 001343 647 TTADNGFKILANAIG 661 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~ 661 (1096)
|..|.+|++|.-...
T Consensus 427 ~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 427 GEADKTIKMYKEDEH 441 (460)
T ss_pred ccCCcceEEEecccc
Confidence 999999999975443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=262.83 Aligned_cols=294 Identities=14% Similarity=0.206 Sum_probs=245.4
Q ss_pred CcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe--eeEEEcCcCc
Q 001343 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRK 585 (1096)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~ 585 (1096)
.-+|++++.|.+||+|...++.+..++......|+.+.+.|+++.|++++ ...|++||+++++ ++.+|.+|.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC
Confidence 35899999999999999999999999999999999999999999999987 7799999998765 6899999988
Q ss_pred cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccc
Q 001343 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1096)
Q Consensus 586 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 665 (1096)
.|.++.|..+|+++++|++||+++|||++.....+.+... .+|+++..+|+...|++|..+|.|++||+.+. .+.
T Consensus 85 -NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~ 159 (311)
T KOG0315|consen 85 -NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCT 159 (311)
T ss_pred -ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCC-ccc
Confidence 8999999999999999999999999999996666665543 48999999999999999999999999999665 111
Q ss_pred ccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeee
Q 001343 666 RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1096)
Q Consensus 666 ~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 745 (1096)
..
T Consensus 160 ~~------------------------------------------------------------------------------ 161 (311)
T KOG0315|consen 160 HE------------------------------------------------------------------------------ 161 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred eecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccc
Q 001343 746 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825 (1096)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~ 825 (1096)
.+|+ ....|.++...|||..++++...|...+|++-..... ..-..+. .+
T Consensus 162 ----------liPe---~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~----------------s~l~P~~-k~ 211 (311)
T KOG0315|consen 162 ----------LIPE---DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA----------------SELEPVH-KF 211 (311)
T ss_pred ----------cCCC---CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc----------------ccceEhh-he
Confidence 1222 4457888999999999999988999999998542210 0001111 24
Q ss_pred cCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccc-eEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeec
Q 001343 826 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1096)
Q Consensus 826 ~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~ 903 (1096)
+. |..-+..+.+|||+++||+++ |.+++||+..+. +.-..+.+|...++.++||. |+.+|++|+.|+.+++|++.
T Consensus 212 ~a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 212 QA--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred ec--ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccc
Confidence 43 899999999999999999999 799999999887 66677889999999999999 99999999999999999999
Q ss_pred cceeeeeeccccccccceeeecCCCCCCCCCceEE
Q 001343 904 VDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 938 (1096)
Q Consensus 904 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 938 (1096)
.++ .++...||.. ...+++
T Consensus 289 ~~k---------------~v~qy~gh~K-~~vc~~ 307 (311)
T KOG0315|consen 289 AGK---------------EVRQYQGHHK-AAVCVA 307 (311)
T ss_pred cCc---------------eeeecCCccc-ccEEEE
Confidence 988 5667777765 444444
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=274.05 Aligned_cols=287 Identities=17% Similarity=0.237 Sum_probs=250.1
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
....+|++.|.++.|+|+|. +||+|+.|..|.+|++.....-. -.+++|+++|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence 34457999999999999999 79999999999999975432211 137899999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~ 496 (1096)
++.|++++.|.+|+.||+++|++.+ .+++|..-|+.+.-+.-|.. ++.|++.|+++++|| .+..+++++. ....
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999999888 47789999999996666665 788999999999999 7777777765 4567
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC---
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--- 573 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~--- 573 (1096)
++++.|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++++-+. +..+++||++.
T Consensus 177 ltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 89999855 5578999999999999999999999999999999999999999999999987 99999999874
Q ss_pred -CeeeEEEcCcCcc---ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC
Q 001343 574 -GTIKRTYAGFRKK---SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 574 -~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
.+++..+.++.-. ....++|+|+++.+-+|+.|..+++||......+..+.+|.+ .|++++|+|...+|.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEecc
Confidence 4557778776431 344589999999999999999999999999899999988876 8999999999999999999
Q ss_pred CCcEEEE
Q 001343 650 DNGFKIL 656 (1096)
Q Consensus 650 dg~i~iw 656 (1096)
|.+|.+=
T Consensus 329 dk~i~lg 335 (338)
T KOG0265|consen 329 DKTIYLG 335 (338)
T ss_pred CceeEee
Confidence 9998763
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=288.53 Aligned_cols=280 Identities=20% Similarity=0.284 Sum_probs=253.5
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
....|++++|+.+|. +||+|+.||.++||+.. |..+. .+..|+++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~-G~l~~-------------------tl~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKD-GNLIS-------------------TLGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecC-chhhh-------------------hhhccCCceEEEEEcCCCCEEE
Confidence 346799999999999 89999999999999976 44443 2778999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~ 501 (1096)
+++.|+++.+||..+|.... .+.-|..+-.++.|-.+.. +++++.|+.|+|+. ....++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987665 3556888878899987765 89999999999999 77789999999999999999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC---------CEEEEEeeccCCCCeEEEEeCC
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG---------SRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~---------~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
|+| .+.+|++++.|++++||++........+..|...|+.+.|+|+| ..+++++. ++.|++||+.
T Consensus 367 ~n~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNP--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECC--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 977 55899999999999999998888888999999999999999975 36778877 9999999999
Q ss_pred CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
.+.++.+|..|.. +|.+++|+|+|+++++|+.||.|.+|+.++++..+...... .|..++|+.+|.+|..+..|+.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999988 99999999999999999999999999999999999988654 5899999999999999999999
Q ss_pred EEEEEcC
Q 001343 653 FKILANA 659 (1096)
Q Consensus 653 i~iwd~~ 659 (1096)
+++.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998874
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=267.93 Aligned_cols=293 Identities=17% Similarity=0.230 Sum_probs=239.5
Q ss_pred cccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCcc--ccceeecccccCEEEEEEecCCCcEEEEEEeCCCc
Q 001343 400 SIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~ 476 (1096)
..+.+|++.|+.++..+. ...|++++.|.++.+|++...... ...+.+.||...|..+..++||+ +.++++.|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccce
Confidence 358999999999999986 568889999999999998753211 12336889999999999999999 8999999999
Q ss_pred EEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC--CCcEEEEEEcCC--CC
Q 001343 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSAD--GS 551 (1096)
Q Consensus 477 i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~--~~ 551 (1096)
+++|| .+|+..+.|.||...|.+++|++ |...+++|+.|.+|++|+.-.. +..+.... ...|.++.|+|+ ..
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecC--CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999 88899999999999999999977 5589999999999999997644 44444333 679999999998 67
Q ss_pred EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCC
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
.|++++. |+.+++||+++.+....+.+|.. .++.++++|||...++|+.||.+.+||++.++.+..+.... .
T Consensus 164 ~Ivs~s~----DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~---~ 235 (315)
T KOG0279|consen 164 IIVSASW----DKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD---I 235 (315)
T ss_pred EEEEccC----CceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC---e
Confidence 8888887 99999999999999999999988 89999999999999999999999999999999988876543 7
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCc----ccccCcceeEEeecCCCeEEecCCCCceeEeccC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPF----EALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~ 707 (1096)
|.+++|+|+...|+.+.. ..|+|||+.+. .++..+..... ........+++
T Consensus 236 v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~~l~~d~~g~s~~~~~~~clsla----------------------- 290 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVEELKLDGIGPSSKAGDPICLSLA----------------------- 290 (315)
T ss_pred EeeEEecCCceeEeeccC-CceEEEeccch-hhhhhccccccccccccCCcEEEEEE-----------------------
Confidence 999999999877766654 46999999887 44433322111 11111122334
Q ss_pred CCcCCCcccCCCCccCCCCCCccccCCCCCccceeee
Q 001343 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 708 ~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
+++||..|+.|..|+.|++|.+.
T Consensus 291 --------------ws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 291 --------------WSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred --------------EcCCCcEEEeeecCCcEEEEEee
Confidence 45566666888888999999875
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=262.06 Aligned_cols=289 Identities=19% Similarity=0.328 Sum_probs=236.0
Q ss_pred EEeec-CCCceEEEEEcCC-CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 338 AVSLH-QGSTVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~-g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
++++. |++.|+.++|+|- |. +||+|+.|..|+||+...+....- +..+-.+|+..|.+++|+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAws 70 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWS 70 (312)
T ss_pred EEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeec
Confidence 44444 9999999999999 87 899999999999999885433211 111235799999999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC---ceEEEee
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFE 491 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~~~~~~ 491 (1096)
|.|++||+|+.|.++.||.-..+ .+....++.||...|.+++|+++|. +||+|+.|++|-||. ..+ .++..++
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred CCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 99999999999999999986654 3444557999999999999999999 999999999999999 433 4678899
Q ss_pred CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC---CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
.|...|..+.|||+. .+|++++.|.+|++|+-.. -.+..++.+|...|.+++|++.|..|++++. ++.++|
T Consensus 148 ~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~I 221 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSI 221 (312)
T ss_pred cccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEe
Confidence 999999999999976 5999999999999997662 3456788889889999999999999999987 999999
Q ss_pred EeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe--E----EEEeecCCCCCCccEEEEeCC-C
Q 001343 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--I----LTSTDAEGGLPNLPRLRFSKE-G 641 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~----~~~~~~~~~~~~v~~~~~s~~-~ 641 (1096)
|-.. ..+.+.+...+..+.|. ...|++++.|+.|++|.....- + +.. ..+.|...|+++.|+|. .
T Consensus 222 w~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~ 293 (312)
T KOG0645|consen 222 WRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVS 293 (312)
T ss_pred eeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCC
Confidence 9754 23344444478888887 5689999999999999876421 1 111 12233448999999994 7
Q ss_pred CEEEEEECCCcEEEEEcC
Q 001343 642 NLLAVTTADNGFKILANA 659 (1096)
Q Consensus 642 ~~l~~~~~dg~i~iwd~~ 659 (1096)
++|+++++||.|++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=259.83 Aligned_cols=287 Identities=17% Similarity=0.238 Sum_probs=249.5
Q ss_pred CcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 334 PRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 334 ~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
|.+..+.+. |.++|.++.|+-||+ |..+++.|.+|++||...|.++++ +.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 444455666 999999999999999 577888999999999999999875 88999999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE---cCCceEEE
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRKLFN 489 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd---~~~~~~~~ 489 (1096)
+.+.|+..+++|+.|..|.+||+++|+..+ .+.+|.+.|+.+.|+.+.. .+++|+.|.++++|| .+.++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999999888 5889999999999999988 999999999999999 45678888
Q ss_pred eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
+......|.++.+. +..|++|+.||++|.||++.+..... .-+++|+++.|++|++..++++. ++.+++.
T Consensus 141 ldea~D~V~Si~v~----~heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVA----EHEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEec----ccEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 98888899999873 46899999999999999997765443 34568999999999999999987 9999999
Q ss_pred eCCCCeeeEEEcCcCccce-EEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 570 NESEGTIKRTYAGFRKKSN-GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 570 d~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
|-.+|++++.+.+|.+... ..++++....++++|++||.|++||+.....+..+..+... .|.+++++|....++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCccceeEec
Confidence 9999999999999987432 33677777889999999999999999999999988877652 488999999877777776
Q ss_pred CCCcEEEEE
Q 001343 649 ADNGFKILA 657 (1096)
Q Consensus 649 ~dg~i~iwd 657 (1096)
.. .+.+|.
T Consensus 290 ~~-~~~~~~ 297 (307)
T KOG0316|consen 290 GH-GDLFWY 297 (307)
T ss_pred CC-ceecee
Confidence 54 455554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=271.50 Aligned_cols=328 Identities=16% Similarity=0.198 Sum_probs=275.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
|..|+..|.+++.+|+.+++|||+.|..-.+|++.+|.... .+.+|+..|+++.|+.||. +||||+-+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 77899999999999999999999999999999999998555 6889999999999999999 999999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.++.....+...-..+.-+.||| .+.+|+.|+.||.+-+|.+.+......+.+|+.++++-.|.|+|+.++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 88888888876677788899999 4589999999999999999998888899999999999999999999999987
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC--------CC-CCC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE--------GG-LPN 631 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~-~~~ 631 (1096)
++.|++|+..++.++..+.........++.++..+..++.|..++.+++-+..+|+.+...... .+ ...
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 9999999999999999988666667778899999999999999999999999998887766531 11 112
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~ 711 (1096)
|-.+.++..-.+.|+|+-||+|.|||+...
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 333334444556666666666666665332
Q ss_pred CCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEe
Q 001343 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1096)
Q Consensus 712 ~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw 791 (1096)
..+. .+ .|...|..+.|-+ ..+|++++.+|.|+.|
T Consensus 319 ---------------------------------------~~R~-~c----~he~~V~~l~w~~-t~~l~t~c~~g~v~~w 353 (399)
T KOG0296|consen 319 ---------------------------------------TLRH-IC----EHEDGVTKLKWLN-TDYLLTACANGKVRQW 353 (399)
T ss_pred ---------------------------------------hhhe-ec----cCCCceEEEEEcC-cchheeeccCceEEee
Confidence 1111 11 1778899999999 6679999999999988
Q ss_pred eccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcc
Q 001343 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM 860 (1096)
Q Consensus 792 ~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~ 860 (1096)
| ..+|++.. ++.| |...|.+++++|+++++++++ |++.+||+..
T Consensus 354 D----------------------aRtG~l~~-~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 354 D----------------------ARTGQLKF-TYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred e----------------------ccccceEE-EEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 7 46676666 6887 999999999999999999999 6889999863
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=275.50 Aligned_cols=292 Identities=16% Similarity=0.246 Sum_probs=253.3
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.++.+|.++|.|+++.|.+.++++|+.|++|+|||+.+|+... ++.||...|..+++++-.. ++++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 3689999999999999999999999999999999999998666 6889999999999999998 8999999999999
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
|| ...+.++.+.||-..|.+++.+|.- ..|++|+.|.++|+||+++...+..+.+|..+|.++.+.|....+++++.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99 8899999999999999999999865 58999999999999999999999999999999999999999999999997
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
|++|++||+..|+...++..|.. .+.+++.+|....|++++.| .|+-|++..|..+..+.++.. .|++++.+
T Consensus 298 ----D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~n 369 (460)
T KOG0285|consen 298 ----DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVN 369 (460)
T ss_pred ----CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeeec
Confidence 99999999999999999998887 89999999999999998876 689999999999999887765 88999998
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccccccc---cCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcc
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLRSLRAV---ENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~ 715 (1096)
.|+ ++++|++.|.+.+||..++. ..+.. .....-.....|.+.+|..
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~-nyQ~~~t~vqpGSl~sEagI~as~fDk---------------------------- 419 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGH-NYQRGQTIVQPGSLESEAGIFASCFDK---------------------------- 419 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCc-ccccccccccCCccccccceeEEeecc----------------------------
Confidence 876 77899999999999999883 22222 2211111122334444443
Q ss_pred cCCCCccCCCCCCccccCCCCCccceeeee
Q 001343 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1096)
Q Consensus 716 ~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 745 (1096)
.|..|+++..|.+|++|.-++
T Consensus 420 ---------tg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 420 ---------TGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ---------cCceEEeccCCcceEEEeccc
Confidence 344568888899999998764
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=312.45 Aligned_cols=284 Identities=22% Similarity=0.375 Sum_probs=252.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCC--eeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
|...|.|+.|+|+|+ ++++++.|+.|++|+..+++ .+. .+.+|...|.+++|+||+++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 588999999999999 59999999999999997766 332 25789999999999999999
Q ss_pred EEEEECCCeEEEEEc-cCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE
Q 001343 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~-~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~ 498 (1096)
+++|+.|++|+|||+ ..+..++ ++.+|...|++++|+|+++ .+++|+.|++|+||| .+++++..+.+|.++|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 7889999999999999997 899999999999999 88999999999999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCC--eeeEEeCCCC--cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
+++|.+ ++.+|++++.||.|++||+.++. ....+..+.. .++++.|+|++.++++++. ++.+++||+..+
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 999966 77899999999999999999988 3455554444 5999999999999999987 889999999999
Q ss_pred eeeEEEcCcCcc--ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE--CC
Q 001343 575 TIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--AD 650 (1096)
Q Consensus 575 ~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d 650 (1096)
.....+.+|... .+.....++.+.++++|+.|+.|++|+..++..+..+.+|. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999875 33344557789999999999999999999999999998884 44889999999999999998 78
Q ss_pred CcEEEEEc
Q 001343 651 NGFKILAN 658 (1096)
Q Consensus 651 g~i~iwd~ 658 (1096)
+.+++|..
T Consensus 446 ~~~~~w~~ 453 (456)
T KOG0266|consen 446 GLIRLWKY 453 (456)
T ss_pred ceEEEecC
Confidence 99999975
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=274.07 Aligned_cols=271 Identities=21% Similarity=0.290 Sum_probs=246.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|..+|+.+-|+|+-..+++++.|++|++||..+|+..+ .++||...|.+++|+..|+ ++++|+.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 77899999999999999999999999999999999999866 6899999999999999999 999999999999999
Q ss_pred --cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 482 --LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 482 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
...++++.+.+|...|.+++|.|. |.+|++++.|.+|+.|++.++-++..+.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 346788999999999999999885 479999999999999999999999999999999999999999999999997
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC---------------CCEEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---------------QNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
+..+++|-..++++...++.|.- ++.+++|.|. +.++.+++.|++|++||+.++.++.++.
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred ---CceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 99999999999999999999887 8888888763 2488999999999999999999999999
Q ss_pred cCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
+|.. .|..++|+|.|++|+++.+|+++++||+.+. ++++.+..|.. .++++.|..+..++
T Consensus 332 ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~h-----fvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 332 GHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEH-----FVTSLDFHKTAPYV 391 (406)
T ss_pred cccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCCCcc-----eeEEEecCCCCceE
Confidence 9877 9999999999999999999999999999888 78888776644 46777776554443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=261.20 Aligned_cols=248 Identities=18% Similarity=0.307 Sum_probs=215.1
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .|++++.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 478999999999999999999999999999999976532 23336889999999999999999 99999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
| .+|++++.+++|..-|+++.... .+..++.+++.||++++||++.......+.. ..+++++.|..++..+.+++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc-
Confidence 9 99999999999999999998433 2346788999999999999998777665532 347999999999999999998
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC----CeEEEEeecCCCCC--Ccc
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLP--NLP 633 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v~ 633 (1096)
|+.|++||++......++.||.+ .|..+..+++|.++.+-+.|.++++||++. ..++..+.++.+.- ...
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred ---cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 99999999999999999999998 899999999999999999999999999975 33466776665432 345
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
.++|+|++..+.+|+.|..+.+||..
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~ 296 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTT 296 (338)
T ss_pred eeeccCCCCccccccccceEEEeecc
Confidence 67889999999999999999999863
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=277.72 Aligned_cols=274 Identities=19% Similarity=0.282 Sum_probs=235.5
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
....|.|+.+..+ .+++|..|++|+|||..+-+++. .+.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeecc--ceEEE
Confidence 3468999999643 48999999999999998877664 389999999999995 56999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc---eEEEeeCCCCCeE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPVY 498 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~---~~~~~~~~~~~v~ 498 (1096)
+|+.|.+|+|||+++|++++ ++.+|...|..+.|+.. ++++++.|.++.+|| .... +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999988 57789999999999854 899999999999999 4433 3356789999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
.+.| +.+++++++.|.+|++|++.+.+.+..+.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9998 4479999999999999999999999999999999998886 5788999987 9999999999999999
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE-------EEeecCCCCCCccEEEEeCCCCEEEEEECCC
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL-------TSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1096)
.+.||.. -+.++.|. .+.+++|+.||+|++||+..+... .......+.+.|..+.| |...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999988 89999994 578999999999999999875432 11122233448888888 667899999999
Q ss_pred cEEEEEcCCCc
Q 001343 652 GFKILANAIGL 662 (1096)
Q Consensus 652 ~i~iwd~~~~~ 662 (1096)
+|.|||..++.
T Consensus 470 tILiWdFl~~~ 480 (499)
T KOG0281|consen 470 TILIWDFLNGP 480 (499)
T ss_pred eEEEEEcCCCC
Confidence 99999998874
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-30 Score=261.50 Aligned_cols=500 Identities=14% Similarity=0.159 Sum_probs=355.4
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCC--------eEEEEecCCCCeeecccceeecccccCccccccccccCCCCE
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNG--------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg--------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
.+.++|+..|.|++.+||-- .+|+|-..| .|+|||..+-..+. ++..-...|
T Consensus 98 r~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~-------------------V~g~f~~GV 157 (626)
T KOG2106|consen 98 RHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLH-------------------VIGFFDRGV 157 (626)
T ss_pred ccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeee-------------------eeccccccc
Confidence 34567999999999999976 577775544 58999977655553 255567789
Q ss_pred EEEEEcC--CCCEEEEE--ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 410 SRVAWSP--DGNYVGVA--FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 410 ~~l~~sp--d~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
.|++||+ .|.+|+.. +.+..+.|||.+.+..... ....++.|....|.|.+.. ++++++ .+.+..|+ ..+
T Consensus 158 ~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~~~ 232 (626)
T KOG2106|consen 158 TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---VKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLRGG 232 (626)
T ss_pred eeeeecccCCCceEEEecCCCccccchhhchhhhccCc---ceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEccCC
Confidence 9999998 35666654 3456789999998766553 4456778999999999886 566666 78999999 555
Q ss_pred ceEEE---eeCC-CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 485 RKLFN---FEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 485 ~~~~~---~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
...++ ++++ ...|.|++|.+ +| -+++|..+|.|.||+..+.........|++.|.+++...+|..+- |+.
T Consensus 233 ~l~k~~~~fek~ekk~Vl~v~F~e--ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgK-- 306 (626)
T KOG2106|consen 233 SLVKRQGIFEKREKKFVLCVTFLE--NG-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGK-- 306 (626)
T ss_pred ceEEEeeccccccceEEEEEEEcC--CC-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCc--
Confidence 44333 3333 35688999966 43 378999999999999987777666669999999999999998766 776
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcC-ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
|..|..|| ..-+.++...-.. ...+..++- .+.-|++|...+.|..=.+.++-.+.. .+|.. ....++.+|
T Consensus 307 --DRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e--~~~di~vGTtrN~iL~Gt~~~~f~~~v-~gh~d--elwgla~hp 378 (626)
T KOG2106|consen 307 --DRKIILWD-DNYRKLRETELPEQFGPIRTVAE--GKGDILVGTTRNFILQGTLENGFTLTV-QGHGD--ELWGLATHP 378 (626)
T ss_pred --cceEEecc-ccccccccccCchhcCCeeEEec--CCCcEEEeeccceEEEeeecCCceEEE-Eeccc--ceeeEEcCC
Confidence 99999999 4444444333222 225555543 333388888777777777766544433 34443 789999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCC
Q 001343 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719 (1096)
Q Consensus 640 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~ 719 (1096)
+.+++++++.|+.+++|+ .. + +
T Consensus 379 s~~q~~T~gqdk~v~lW~--~~-k-------------------~------------------------------------ 400 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN--DH-K-------------------L------------------------------------ 400 (626)
T ss_pred ChhheeeccCcceEEEcc--CC-c-------------------e------------------------------------
Confidence 999999999999999998 11 1 0
Q ss_pred CccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccC
Q 001343 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN 799 (1096)
Q Consensus 720 ~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~ 799 (1096)
+|... ...+..++.|+|.| .++++...|...+.|.+.
T Consensus 401 --------------------~wt~~------------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~---- 437 (626)
T KOG2106|consen 401 --------------------EWTKI------------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTET---- 437 (626)
T ss_pred --------------------eEEEE------------------ecCceeEeeccCcc-eEEEeeccceEEEEeccc----
Confidence 12211 33467788999999 688888888888777532
Q ss_pred CCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEccc-ceEEEee-cCCCCCee
Q 001343 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT-FKVMTTF-MSPPPAST 876 (1096)
Q Consensus 800 ~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~-~~~~~~~-~~h~~~i~ 876 (1096)
...+.. .- ...+++++.|+|+|.+||.|+ |+.|+||.+.. |...... +.+..+|+
T Consensus 438 ------------------~~lv~~--~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it 495 (626)
T KOG2106|consen 438 ------------------QDLVTI--HT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT 495 (626)
T ss_pred ------------------ceeEEE--Ee--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence 222221 11 367899999999999999999 89999998843 4333332 23448999
Q ss_pred EEEEecCCCcEEEEeeCCCeEEEEeeccce------eeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-E
Q 001343 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDE------LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V 949 (1096)
Q Consensus 877 ~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~ 949 (1096)
.+.||+ |+++|.+.+-|-.|..|.-...+ -..|...... --...+.+.....+..++-+...+.+|+ .
T Consensus 496 hLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~----lGF~v~g~s~~t~i~a~~rs~~~~~lA~gd 570 (626)
T KOG2106|consen 496 HLDWSS-DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCT----LGFEVFGGSDGTDINAVARSHCEKLLASGD 570 (626)
T ss_pred EeeecC-CCceEEeccCceEEEEEccccCcccceecceeeeeeEEE----EEEEEecccCCchHHHhhhhhhhhhhhccc
Confidence 999999 99999999999999999433322 0112111000 0011222222246788888999999999 5
Q ss_pred ecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEec
Q 001343 950 HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1004 (1096)
Q Consensus 950 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 1004 (1096)
..|.|++|....-..........+|.+-|.+++|+.+...+++.+.|..|..|++
T Consensus 571 d~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 571 DFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 7799999988644433332211123899999999999988888889999999986
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-29 Score=266.48 Aligned_cols=505 Identities=12% Similarity=0.143 Sum_probs=352.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeeccc-ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h-~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
....|.++|||.+.+.||.+-.+|.|.+|++..+=.... ++.++ ...|.+++|++.+ .|++.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc
Confidence 456899999999999999999999999999998644433 45554 5689999999655 489999999999999 9
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee--EEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
+++.+..+....+.|++++.+|.. ..++.|+.||.+..++...+.... .+....+.+.++.|+|++..+++|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999998854 689999999977777776665544 33444568999999999999999997
Q ss_pred CCCCeEEEEeCCCCeeeEEEc----Cc---CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 561 DGDSFLVEWNESEGTIKRTYA----GF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~----~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
|+.|++||..++..+.... +- ....+.++.|-. ...|++|...|+|.+||...+.+++....+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 9999999999988776221 11 122456666654 46899999999999999999999999988866 899
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~ 713 (1096)
+++..+++.++++++.|+.|..|...++........ ....+...+++++..++
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~--~r~~h~hdvrs~av~~~------------------------- 302 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS--RRDLHAHDVRSMAVIEN------------------------- 302 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeec--cccCCcccceeeeeecc-------------------------
Confidence 999999999999999999999988766633111111 11111222445554333
Q ss_pred cccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcc----cEEEEEEecCCceEEEeecCCeEE
Q 001343 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS----KVVRLLYTNSAVGLLALGSNGVQK 789 (1096)
Q Consensus 714 ~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~----~i~~l~~s~~~~~l~~~~~dg~v~ 789 (1096)
.+++|+.|.++.+-...+ +.... |.. +-.+.......++++..-....+.
T Consensus 303 --------------~l~sgG~d~~l~i~~s~~---------~~~~~---h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~ 356 (691)
T KOG2048|consen 303 --------------ALISGGRDFTLAICSSRE---------FKNMD---HRQKNLFPASDRVSVAPENRLLVLWKAHGVD 356 (691)
T ss_pred --------------eEEecceeeEEEEccccc---------cCchh---hhccccccccceeecCccceEEEEecccccc
Confidence 345666666665544331 01111 110 011111111222344444455666
Q ss_pred EeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEe--
Q 001343 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT-- 867 (1096)
Q Consensus 790 vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~-- 867 (1096)
+|.+..... .| ......+++..++ ....|.|.++||||+++|.+.-..++||.++.-..+..
T Consensus 357 lwrlGS~~~--~g-----------~~~~~~Llkl~~k---~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~ 420 (691)
T KOG2048|consen 357 LWRLGSVIL--QG-----------EYNYIHLLKLFTK---EKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVIN 420 (691)
T ss_pred ceeccCccc--cc-----------ccChhhheeeecC---CccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEE
Confidence 666643211 00 0111223333344 46779999999999999999878888998854222221
Q ss_pred ---ecCCCCCeeEEEEecCCCcEEEEee-CCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCC
Q 001343 868 ---FMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 943 (1096)
Q Consensus 868 ---~~~h~~~i~~l~~s~~d~~~l~s~~-~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg 943 (1096)
.....-....+.|+- |++.++.++ .+..+.+.++++.. .+ ....++.- +.. ..|..+..|+||
T Consensus 421 v~~~~~~~~~a~~i~fti-d~~k~~~~s~~~~~le~~el~~ps---------~k-el~~~~~~-~~~-~~I~~l~~SsdG 487 (691)
T KOG2048|consen 421 VDDVPLALLDASAISFTI-DKNKLFLVSKNIFSLEEFELETPS---------FK-ELKSIQSQ-AKC-PSISRLVVSSDG 487 (691)
T ss_pred eccchhhhccceeeEEEe-cCceEEEEecccceeEEEEecCcc---------hh-hhhccccc-cCC-CcceeEEEcCCC
Confidence 112234567888998 677777776 67778888777654 00 00011111 222 389999999999
Q ss_pred cEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEee-CCcEEEEEecCCcEEEEecCCCc
Q 001343 944 VRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC-NSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 944 ~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
.+||+ +..+.|.+|++.+++.-..... +...+++++|+| +...|+++..|+.|.-||++..+
T Consensus 488 ~yiaa~~t~g~I~v~nl~~~~~~~l~~r---ln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 488 NYIAAISTRGQIFVYNLETLESHLLKVR---LNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred CEEEEEeccceEEEEEcccceeecchhc---cCcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 99999 8999999999998875333322 267899999995 56678889999999999995443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-29 Score=265.70 Aligned_cols=543 Identities=13% Similarity=0.151 Sum_probs=368.1
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC-CCCEEEEEEcCCCCEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYV 421 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~l 421 (1096)
...+|.|+|||.+.+. ||.+-.||.|.||++..+-... .++.++ ...|.+++|+ ++..|
T Consensus 24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeE
Confidence 3568999999999984 9999999999999998754332 234554 6789999999 56677
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE--EeeCCCCCeE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF--NFEGHEAPVY 498 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~--~~~~~~~~v~ 498 (1096)
.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+...+ ..++... .|...+++|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 788889999999999987766 5677889999999999998 899999999777777 4444432 3445578999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC--------CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
++.|++ ++..|++|+.||.|++||...+........ ...-|+++.|-.++ .+++|.. .|.|.+||
T Consensus 159 slsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS----~G~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS----AGTVTFWD 231 (691)
T ss_pred EEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecC----CceEEEEc
Confidence 999977 567899999999999999998887762211 22257888888665 5666654 89999999
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE--EE--EeecCCCCCCccEEEEeCCCCEEEE
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LT--STDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
...+.+++.+..|.. .+.+++..+++++++++|.|+.|.-|...++.. +. ....|.+ .|.+++..++ .+++
T Consensus 232 ~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h--dvrs~av~~~--~l~s 306 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH--DVRSMAVIEN--ALIS 306 (691)
T ss_pred ccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcc--cceeeeeecc--eEEe
Confidence 999999999999988 899999999999999999999999998876533 22 2234444 8999999887 8999
Q ss_pred EECCCcEEEEEcCCCccccccccCCCcccccCccee-EEeecCCCeEEecCCCCceeEeccC--------CCcCCCccc-
Q 001343 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIES-VALKVSASSAVSSGTPANCKVERSS--------PVRPSPIIN- 716 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~lv~~~s~~~~~~~~~~--------~~~~~~~~~- 716 (1096)
|+.|..+.+-...... ...|... ...+-.+ +...|..+++ .-+......+.+.+ +......+.
T Consensus 307 gG~d~~l~i~~s~~~~-----~~~h~~~-~~~p~~~~v~~a~~~~L~-~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~ 379 (691)
T KOG2048|consen 307 GGRDFTLAICSSREFK-----NMDHRQK-NLFPASDRVSVAPENRLL-VLWKAHGVDLWRLGSVILQGEYNYIHLLKLFT 379 (691)
T ss_pred cceeeEEEEccccccC-----chhhhcc-ccccccceeecCccceEE-EEeccccccceeccCcccccccChhhheeeec
Confidence 9999988886543310 0011100 0000111 1222222222 22222211111111 111111111
Q ss_pred -C----CCCccCCCCCCccccCCCCCccceeeeeeecCCceEEE-EcCCCCCCcccEEEEEEecCCceEEEee-cCCeEE
Q 001343 717 -G----VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV-TMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQK 789 (1096)
Q Consensus 717 -~----~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~v~ 789 (1096)
+ ...+++|+|++++.+.- ...++|.+.. ...... .........-....+.|+-|+..++..+ ....+.
T Consensus 380 k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~----~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le 454 (691)
T KOG2048|consen 380 KEKENISCAAISPDGNLIAISTV-SRTKIYRLQP----DPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLE 454 (691)
T ss_pred CCccceeeeccCCCCCEEEEeec-cceEEEEecc----CcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeE
Confidence 1 23478999999998775 6778888763 112221 1111111334567788888887776666 456666
Q ss_pred EeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEee
Q 001343 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF 868 (1096)
Q Consensus 790 vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~ 868 (1096)
.+++....+ +. .....-+ +....|+.++.||+|++||+.+ .|.|.+|++.+++.....
T Consensus 455 ~~el~~ps~----ke---------------l~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 455 EFELETPSF----KE---------------LKSIQSQ--AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK 513 (691)
T ss_pred EEEecCcch----hh---------------hhccccc--cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch
Confidence 666543211 11 1111111 2467899999999999999998 799999999887765544
Q ss_pred cCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE
Q 001343 869 MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 948 (1096)
Q Consensus 869 ~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~ 948 (1096)
......+++++|+|.+.+.|+.+..|+.+.-||++...+--|+..... .-.+..+.+. ..+..+.|+|.....+.
T Consensus 514 ~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~-nlpk~~~~l~----~~~~gisfd~~n~s~~~ 588 (691)
T KOG2048|consen 514 VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTR-NLPKEPKTLI----PGIPGISFDPKNSSRFI 588 (691)
T ss_pred hccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhcccc-ccccChhhcC----CCCceEEeCCCCccEEE
Confidence 345588999999975788999999999999999966553334332210 0011111222 27888888876664444
Q ss_pred -EecceEEEEEcc
Q 001343 949 -VHETQLAIYDAS 960 (1096)
Q Consensus 949 -~~d~~i~iwd~~ 960 (1096)
-..+.+.+.|..
T Consensus 589 ~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 589 VYDAHWSCLIDFS 601 (691)
T ss_pred EEcCcEEEEEecC
Confidence 444556666654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=298.90 Aligned_cols=245 Identities=20% Similarity=0.356 Sum_probs=227.0
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCC--------cc--------------------ccceeecccccCEEEE
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--------DL--------------------RQHSQIDAHVGAVNDL 457 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~--------~~--------------------~~~~~l~~h~~~v~~l 457 (1096)
...++|..||+|++.||.|..|..|++|.+...+ .+ ....++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4579999999999999999999999999987421 00 0113578999999999
Q ss_pred EEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC
Q 001343 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (1096)
Q Consensus 458 ~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 536 (1096)
.|+|+.+ +|++||.|++||+|. .+..++..++||..||+.+.|+| .|.+++|++.|++-++|..+.......+.+
T Consensus 458 sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhcc
Confidence 9999999 999999999999999 89999999999999999999987 679999999999999999999999999999
Q ss_pred CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 537 ~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
|...|.|+.|+|+..++++|+. |.++++||..+|..++.|.||.. +|.+++|+|+|++|++|++||.|.+||+.+
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred cccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 9999999999999999999987 99999999999999999999988 999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.++..+..|.+ .|.++.|+.+|..||+|+.|++|++||+...
T Consensus 609 ~~~v~~l~~Ht~--ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GSLVKQLKGHTG--TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CcchhhhhcccC--ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999998844 9999999999999999999999999998654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=285.65 Aligned_cols=292 Identities=18% Similarity=0.292 Sum_probs=250.9
Q ss_pred CCcceEEeec-CCCceEEEEEcC-CCCcEEEEEeCCCeEEEEecCC-CCeeecccceeecccccCccccccccccCCCCE
Q 001343 333 LPRTVAVSLH-QGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 333 ~~~~~~~~l~-h~~~V~~v~fsp-~g~~llasg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
+|...++++. |+..|+++.|.| .+. ||++|+.|+.|+||++.. ++++++ +.||..+|
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V 261 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV 261 (503)
T ss_pred ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence 3666778876 999999999999 565 999999999999999987 666654 89999999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE
Q 001343 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1096)
Q Consensus 410 ~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 488 (1096)
..++|+++|..+++++.|+.|++||+++|+++..+. ....++|+.|.||+.. .+++|+.|+.|+.|| .+++.++
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence 999999999999999999999999999999876432 3456899999999955 889999999999999 9999999
Q ss_pred EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEE
Q 001343 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~ 567 (1096)
.+..|-+.|..+.|.+ +|..+++.+.|++++||+.+....+... ..+.....++..+|+++++++-+. ++.|.
T Consensus 337 eYd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ 410 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA 410 (503)
T ss_pred HHHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence 9999999999999976 6789999999999999999877665433 334447789999999999999887 89999
Q ss_pred EEeCCC---CeeeEEEcCcCccc-eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CCC
Q 001343 568 EWNESE---GTIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGN 642 (1096)
Q Consensus 568 iwd~~~---~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 642 (1096)
++.+.. ....+.|.||.... -..+.|+|||++|++|..||.+++||.++-+++..+..|.. .+..+.|+| ...
T Consensus 411 ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPS 488 (503)
T ss_pred EEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcc
Confidence 998653 23345677776432 34489999999999999999999999999999999998855 899999999 457
Q ss_pred EEEEEECCCcEEEEE
Q 001343 643 LLAVTTADNGFKILA 657 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd 657 (1096)
.+|+++.||.|++|+
T Consensus 489 kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 489 KVATCGWDGLIKIWD 503 (503)
T ss_pred eeEecccCceeEecC
Confidence 899999999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=275.34 Aligned_cols=241 Identities=16% Similarity=0.275 Sum_probs=218.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 484 (1096)
-+..|..|.|.|+|+.|++|+..|.+.+|+..+-. .+ ..++.|..+|+++.|++++. .++||+.+|.|++|+.+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-FE--tilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-FE--TILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceee-HH--HHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 35589999999999999999999999999974422 11 14678999999999999999 899999999999999777
Q ss_pred ceEEEeeCCC-CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 485 RKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 485 ~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
+.++.+.+|. ..|.+++|+| +...+++++.||+|+|||....+....+.+|+-.|.++.|+|....+++++. |
T Consensus 170 nnVk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----D 243 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----D 243 (464)
T ss_pred hhhHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----C
Confidence 7777777665 8999999988 4468999999999999999999988899999999999999999999999997 8
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CCC
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGN 642 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 642 (1096)
..|++||.+++.++.++.+|.. .|..+.|++++++|++++.|..++++|+++.+.+..+++|.. .|+++.|+| ...
T Consensus 244 nlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNES 320 (464)
T ss_pred ceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeecccccccc
Confidence 8999999999999999999988 899999999999999999999999999998888888888766 899999999 668
Q ss_pred EEEEEECCCcEEEEEcC
Q 001343 643 LLAVTTADNGFKILANA 659 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~ 659 (1096)
+|.+|+.||.|..|.+.
T Consensus 321 lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ceeeccCCCceEEEecc
Confidence 99999999999999885
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=282.14 Aligned_cols=282 Identities=26% Similarity=0.425 Sum_probs=251.7
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+|.++|++++|+|+++ ++++|+.||.|.+|++.+++.... +..|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEE
Confidence 4899999999999998 699999999999999988765432 56788899999999999999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++++.||.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.|++|| .+++....+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876555 5678999999999999987 788888899999999 7788888999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
+|++. +.++++++.||.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||+.+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99874 578888888999999999988888888888889999999999999998886 899999999999999888
Q ss_pred cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
..+.. .+..+.|++++.++++++.+|.|++|++.+++....+..+.. .+.+++|+|++..+++++.|+.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN--SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC--cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77766 888999999988888888899999999999888888875544 899999999999999999999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-30 Score=243.19 Aligned_cols=291 Identities=14% Similarity=0.234 Sum_probs=235.8
Q ss_pred ccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCccccceee-cccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l-~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
.+.+|.+.|..++|+|- |..||+|+.|+.|++|+...+........+ .+|+..|..++|+|.|+ +|+++|.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEE
Confidence 47889999999999998 899999999999999999864433322223 37999999999999999 999999999999
Q ss_pred EEE-c--CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC---CeeeEEeCCCCcEEEEEEcCCCCE
Q 001343 479 VWE-L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 479 iwd-~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~~~~ 552 (1096)
||. . +-+++.++.||...|.+++|+. +|.+|++++.|+.|-||.+... ++...+..|.+.|..+.|+|....
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 998 4 3468899999999999999976 6789999999999999998743 344578899999999999999999
Q ss_pred EEEEeeccCCCCeEEEEeCC---CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC
Q 001343 553 LFSCGTSKDGDSFLVEWNES---EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
|++++. |++|++|.-. ...+++++.+|.. .+.++.|++.|..+++++.|++++||...+. +. ..+.
T Consensus 165 L~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~s 233 (312)
T KOG0645|consen 165 LFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHS 233 (312)
T ss_pred eEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcc
Confidence 999998 9999999866 4578999999988 8999999999999999999999999996522 21 1223
Q ss_pred CCccEEEEeCCCCEEEEEECCCcEEEEEcCCCc-cccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCC
Q 001343 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIGL-RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~ 708 (1096)
..++.+.|. ...|++++.|+.|++|.-.... ...-.+.......+...|+++.+.|.++
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~------------------ 293 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS------------------ 293 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC------------------
Confidence 478889998 5589999999999999866431 1111111222223344688888887432
Q ss_pred CcCCCcccCCCCccCCCCCCccccCCCCCccceeee
Q 001343 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 709 ~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
.+|++++.||.+++|.+.
T Consensus 294 ------------------~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 ------------------NRLASGGDDGIVNFWELE 311 (312)
T ss_pred ------------------CceeecCCCceEEEEEec
Confidence 346888999999999874
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=265.96 Aligned_cols=291 Identities=13% Similarity=0.178 Sum_probs=247.0
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
++..|.+.|.-+.||++|+|||+++.|.+..+|++.....++..+++.+|..+|..+.||||++ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 5888999999999999999999999999999999887666766778999999999999999999 89999999999999
Q ss_pred E-cCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-CCcEEEEEEcCCCCEEEEEe
Q 001343 481 E-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 481 d-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~ 557 (1096)
| .+|.+...+. ++...+.+++|.| ||..+++|+.|+++..||++... .....+. ...|.++++++||+++++.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe
Confidence 9 8888877664 3467899999987 67889999999999999987543 2222222 24699999999999999988
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1096)
. +..|++++.++...+..+..+. ++++.+++.+++++++.-.+..+++||+.....+..+.++.....+..-+|
T Consensus 374 ~----d~~i~l~~~e~~~dr~lise~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 374 V----DKKIRLYNREARVDRGLISEEQ--PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred c----ccceeeechhhhhhhccccccC--ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 7 9999999988776665555543 799999999999999999999999999998888888887765545555566
Q ss_pred eC-CCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCccc
Q 001343 638 SK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1096)
Q Consensus 638 s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~ 716 (1096)
-- +..++++|+.|+.|+||+..++ ..+..+.+|.. .|++++++|....
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~-----~vNcVswNP~~p~------------------------- 496 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSK-----TVNCVSWNPADPE------------------------- 496 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCC-ceeEeecCCcc-----eeeEEecCCCCHH-------------------------
Confidence 54 5589999999999999999999 78888999864 4888999887554
Q ss_pred CCCCccCCCCCCccccCCCCCccceeee
Q 001343 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 717 ~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
++|+++.||+||||...
T Consensus 497 -----------m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 497 -----------MFASASDDGTIRIWGPS 513 (519)
T ss_pred -----------HhhccCCCCeEEEecCC
Confidence 47899999999999876
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=307.54 Aligned_cols=291 Identities=14% Similarity=0.181 Sum_probs=237.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 420 (1096)
.|.+.|++++|+|+|+ ++|+|+.|+.|+|||+.+...... . .......+. +...|.+++|+| ++.+
T Consensus 481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIKSQ 547 (793)
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCCCE
Confidence 3899999999999999 799999999999999764211000 0 000000122 356899999988 4789
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec-CCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~ 498 (1096)
||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..|.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 9999999999999999887665 5789999999999997 667 899999999999999 888888888755 6789
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCC-eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC----
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---- 573 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~---- 573 (1096)
++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 622 ~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 622 CVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISG 695 (793)
T ss_pred EEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCccc
Confidence 999854 357899999999999999998765 455677888899999997 7788999887 99999999974
Q ss_pred --CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee-----------cCCCCCCccEEEEeCC
Q 001343 574 --GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-----------AEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 574 --~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~ 640 (1096)
...+..+.+|.. .+..++|++++.+|++|+.|+.|++|+......+..+. ...+...|.+++|+|+
T Consensus 696 ~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 357788989877 78889999999999999999999999987665443221 1122336899999999
Q ss_pred CCEEEEEECCCcEEEEEc
Q 001343 641 GNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd~ 658 (1096)
+..|++|+.||.|++|++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-30 Score=288.56 Aligned_cols=274 Identities=21% Similarity=0.359 Sum_probs=237.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--c
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~ 482 (1096)
|...|.++.|+++|+++++++.|+.+++|+..+++. .....+.+|...|.+++|+|+++ ++++++.|++|+||| .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 478999999999999999999999999999977762 22235689999999999999999 999999999999999 4
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+..++++++|...|++++|+| +++++++|+.|++|++||+++++....+..|...|++++|+++++++++++.
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC----
Confidence 4588999999999999999988 4589999999999999999999999999999999999999999999999976
Q ss_pred CCeEEEEeCCCCe--eeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC-CCccEEEEe
Q 001343 563 DSFLVEWNESEGT--IKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFS 638 (1096)
Q Consensus 563 ~~~i~iwd~~~~~--~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s 638 (1096)
|+.|++||+.++. +...+.++... .+..++|+|++.++++++.|+.+++||+..+.....+..+... ..+.+...+
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 9999999999999 67888888775 6899999999999999999999999999999999988887653 234445557
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
+.+.++++|+.|+.|.+|++.++ ..+..+.++. ...+..+.++|...++
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~----~~~~~~~~~~~~~~~~ 437 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHS----KAAVSDLSSHPTENLI 437 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCC----CCceeccccCCCcCee
Confidence 79999999999999999999886 6666677763 2234445555555444
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=271.24 Aligned_cols=290 Identities=16% Similarity=0.218 Sum_probs=252.0
Q ss_pred cccccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEccC-CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
..+.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|+|.|+.+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~l 282 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFL 282 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceee
Confidence 35889999999999999 899999999999999999977 66666 6889999999999999999 89999999999
Q ss_pred EEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
++|| .+|+++..+. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999 9999999987 45568999999975 4799999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC---eEEEEeecCCCCCCcc
Q 001343 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV---NILTSTDAEGGLPNLP 633 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~ 633 (1096)
+. ++.+++|+.+.+..++.+..+......++..+|+++++++-+.|+.|.+|.+... .....+.+|...+.-.
T Consensus 361 SD----dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 361 SD----DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred cc----CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 87 8999999999988887776665557778999999999999999999999997643 2334556666555677
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~ 713 (1096)
.+.|||||.+|++|..||.+.+||..+. +.+..+..+ ..++..+.|+|....
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lkah-----~~~ci~v~wHP~e~S---------------------- 488 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLKAH-----DQPCIGVDWHPVEPS---------------------- 488 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhh-hhhhccccC-----CcceEEEEecCCCcc----------------------
Confidence 8999999999999999999999999887 667777766 345777888876433
Q ss_pred cccCCCCccCCCCCCccccCCCCCcccee
Q 001343 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1096)
Q Consensus 714 ~~~~~~~~~s~d~~~l~s~~~dg~i~iw~ 742 (1096)
.+|+++.||.|++|+
T Consensus 489 --------------kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 489 --------------KVATCGWDGLIKIWD 503 (503)
T ss_pred --------------eeEecccCceeEecC
Confidence 367888899999996
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=257.54 Aligned_cols=651 Identities=15% Similarity=0.172 Sum_probs=357.1
Q ss_pred Eeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 339 VSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 339 ~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
-.++ |++.|+.+.|+|-...|||+|+.|..|+||.+..|-... +.-....+.+..-.|.|+.|+|.
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHpT 139 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHPT 139 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecccC
Confidence 3445 999999999999888799999999999999998543221 00011234555678999999997
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEA 495 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~ 495 (1096)
..-|...+..|+++|||+.+++.+. ++.+|...|.++.|+.||+ +|++++.|+.|+||| ..++.++...+|.+
T Consensus 140 aDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 140 ADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred cCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccccc
Confidence 6656656677999999999987766 6889999999999999999 999999999999999 78889999999976
Q ss_pred Ce-EEEEeeecCCCcEEEEEECC----CeEEEEEcCCCCeee-EEeCC-CCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 496 PV-YSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRV-DYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 496 ~v-~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~-~~~~~-~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
.- ..+.| .++-..|++.+.+ ..|++||.+...... .+... ...|.--.|.||.++++.++. ++..++.
T Consensus 215 ~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l~~ 289 (1012)
T KOG1445|consen 215 MRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKLFM 289 (1012)
T ss_pred chhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceEEE
Confidence 42 23445 3344567776655 568999988654332 22222 124666678899999988875 5888888
Q ss_pred EeCCCCeee--EEEcCcCccceEEEEEeCCCCEEEEEEc-C--------------------------------------C
Q 001343 569 WNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGE-D--------------------------------------S 607 (1096)
Q Consensus 569 wd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--------------------------------------g 607 (1096)
+.+...+.. ..+...-.......+.-|....-+..++ + +
T Consensus 290 lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~ 369 (1012)
T KOG1445|consen 290 LEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPG 369 (1012)
T ss_pred EEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccC
Confidence 887654321 1111000000011111111100000000 0 0
Q ss_pred -eEEEEeCCCCeEEEEeec------CCC----------------CCCccEEEEeCCCC-EEEEEECCC------------
Q 001343 608 -QIKFWDMDNVNILTSTDA------EGG----------------LPNLPRLRFSKEGN-LLAVTTADN------------ 651 (1096)
Q Consensus 608 -~i~iwd~~~~~~~~~~~~------~~~----------------~~~v~~~~~s~~~~-~l~~~~~dg------------ 651 (1096)
.---|--.+.+.+..... |+. ...|......|... -.-..+ |+
T Consensus 370 ~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~-~~~Pd~~~qpaV~~ 448 (1012)
T KOG1445|consen 370 CTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSS-NNVPDVQEQPAVPK 448 (1012)
T ss_pred cCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccc-cCCCccccCCCcCc
Confidence 000011011111111100 000 00000000000000 000000 00
Q ss_pred --cEEEEEcCCCccccccccCCCccc----ccCcceeEEeecCCCeEEecCCCCcee-EeccCCCcC--CCccc-----C
Q 001343 652 --GFKILANAIGLRSLRAVENPPFEA----LRTPIESVALKVSASSAVSSGTPANCK-VERSSPVRP--SPIIN-----G 717 (1096)
Q Consensus 652 --~i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~g~~lv~~~s~~~~~-~~~~~~~~~--~~~~~-----~ 717 (1096)
.++-.+............+..+.. ...++. ..+|....++-..+..... ...-..+.+ .+... +
T Consensus 449 ~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s--~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~ 526 (1012)
T KOG1445|consen 449 KEEVRELDYRPYEKENGVHTPNADADSTQGNSSPIS--TISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVN 526 (1012)
T ss_pred chhhhhhcccccccccCccCCCcccccccCCCCCcc--ccCCCcccccCCCCcccccccccccccCccccccCCCCCCcc
Confidence 000000000000000000000000 000000 0000000000000000000 000000000 00000 0
Q ss_pred CCCccCCCCCCccccCC------CCCccceeeeeee--------cCCceEEEEcCCCCCCcccEEEEEEecCCceEE--E
Q 001343 718 VDPTSRSMDKPRTVDDV------TDKPKPWQLAEIV--------DSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL--A 781 (1096)
Q Consensus 718 ~~~~~s~d~~~l~s~~~------dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~--~ 781 (1096)
....++.......+.+. -|.+.-|..-... ..-.....+++| .. . -|..+...++ .
T Consensus 527 ~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg---Es---n--Gfcan~~rvAVPL 598 (1012)
T KOG1445|consen 527 FGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG---ES---N--GFCANNKRVAVPL 598 (1012)
T ss_pred cCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCC---cc---C--ceeeccceEEEEe
Confidence 00000111111111110 0111111100000 000001112222 11 1 1233333333 3
Q ss_pred eecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecC-CCcEEEEec-CCeEEEEEc
Q 001343 782 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKISLFNM 859 (1096)
Q Consensus 782 ~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~-dg~~la~~~-dg~v~iwd~ 859 (1096)
.+..|.|-||++.....-|+|.+ ++.-....|+.+.|.| |.+.||++. ||.|++|.+
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~---------------------p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVM---------------------PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccc---------------------cccccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 45578999999977666555422 2222467899999998 557888888 699999999
Q ss_pred ccce-------EEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCC
Q 001343 860 MTFK-------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPT 932 (1096)
Q Consensus 860 ~~~~-------~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 932 (1096)
..+. .-..+..|...|+++.|+|--...|++++.|.+|++||+.+++ ....+.||+.
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~---------------~~~~l~gHtd- 721 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK---------------LYSRLVGHTD- 721 (1012)
T ss_pred ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh---------------hhheeccCcC-
Confidence 6543 2356778999999999999666789999999999999999887 4567889998
Q ss_pred CCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCC----cEEEEecCCC
Q 001343 933 GDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG----NIGVFDADTL 1007 (1096)
Q Consensus 933 ~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg----~i~vwd~~~~ 1007 (1096)
.|..++|||||+.+|+ +.|++|++|+..+++....--.+ .....--.+.|..||+++++.+.|. .|.+||..+.
T Consensus 722 qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g-pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 722 QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG-PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC-CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 9999999999999999 99999999999877643222111 1234445678889999988887664 5889998765
Q ss_pred c--eeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCCCccccCCCC
Q 001343 1008 R--LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPV 1072 (1096)
Q Consensus 1008 ~--~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~~~~~~~~~~ 1072 (1096)
. .+....... -.+... -.|.++.+-+|++|-.|..|.+|++.....++-.-.|+
T Consensus 801 ~~~pl~t~~lDv--------aps~Lv---P~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f 856 (1012)
T KOG1445|consen 801 DLRPLYTQVLDV--------APSPLV---PHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPF 856 (1012)
T ss_pred cCCcceeeeecc--------cCcccc---ccccCCCceEEEecCCCceEEEEEecCCCceeeecccc
Confidence 4 222221111 111222 25566446678889899999999998877555444443
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=256.90 Aligned_cols=230 Identities=16% Similarity=0.291 Sum_probs=204.5
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
...|.|+.+ |...+++|..|++|+|||.++-.+.+ .+.||++.|.|+.|. .+ +|++|+.|.+|++|| .+|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 457999998 56789999999999999999877776 688999999999985 45 899999999999999 999
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee---eEEeCCCCcEEEEEEcCCCCEEEEEeeccC
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~ 561 (1096)
+++.++-+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|+.+.|+ .+++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence 99999999999999999842 59999999999999999876543 3567888899999986 459998886
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
|.+|++|++.+++.++++.+|.. .|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.| |.
T Consensus 339 -DRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~ 410 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DN 410 (499)
T ss_pred -CceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheee--cC
Confidence 99999999999999999999987 6766665 678999999999999999999999999998876 8999999 56
Q ss_pred CEEEEEECCCcEEEEEcCCC
Q 001343 642 NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 642 ~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.+++|+.||+|++||+..+
T Consensus 411 krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ceeeeccccceEEEEecccc
Confidence 79999999999999999776
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=241.15 Aligned_cols=286 Identities=19% Similarity=0.258 Sum_probs=253.4
Q ss_pred EEeecCCCceEEEEEcC---CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 338 AVSLHQGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp---~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
...-+|+.+|-.++||| +| ++|++++.||.-.+-+-++|.-+.+ |.||++.|+...+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 34457999999999987 56 4899999999999999999988865 8999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeC
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEG 492 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~ 492 (1096)
..+...-|+++.|-+-+|||.-+|..+.. + .|+.-|..++|+.|.+ +|++|+.++.++|+| ....+...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 99999999999999999999999988773 2 4888999999999999 899999999999999 44556788999
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
|.+.|..+-|... .+.|++.+.|++||+||.+++..+..+... ..|+++.++++|++|.++. .+.|..||..
T Consensus 142 htg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEeccc
Confidence 9999999999764 368889899999999999999988877654 4699999999999998875 6789999999
Q ss_pred CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe-ecCCCCCCccEEEEeCCCCEEEEEECCC
Q 001343 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1096)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1096)
+...++.+.... .|.+...+|+...+++|++|..++.||..+++.+..+ .+| .++|.|+.|+|+|...++|+.||
T Consensus 214 sf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 214 SFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred cccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCCCc
Confidence 999999888765 4778899999999999999999999999999999886 444 45999999999999999999999
Q ss_pred cEEEEEcCCC
Q 001343 652 GFKILANAIG 661 (1096)
Q Consensus 652 ~i~iwd~~~~ 661 (1096)
+|++|....+
T Consensus 290 TirlWQt~~~ 299 (334)
T KOG0278|consen 290 TIRLWQTTPG 299 (334)
T ss_pred eEEEEEecCC
Confidence 9999998665
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=222.35 Aligned_cols=312 Identities=17% Similarity=0.199 Sum_probs=243.9
Q ss_pred CCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeec-ccceeecccccCccccccccccCCCCEE
Q 001343 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVS 410 (1096)
Q Consensus 332 ~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1096)
....+++.++.....|.+|+|+|.|. +.|+|+...+.+|-....-..++. ++-.. ......-+.-+.|.+.|.
T Consensus 20 k~~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~-----~pp~v~~kr~khhkgsiy 93 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAK-----QPPSVLCKRNKHHKGSIY 93 (350)
T ss_pred ccceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccccccc-----CCCeEEeeeccccCccEE
Confidence 34456678888999999999999999 899999999999876543221110 00000 000001112567899999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEccCC--CccccceeecccccCEEEEEEecCCC--cEEEEEEe-CCCcEEEEE-cCC
Q 001343 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNK--LLCVVTCG-DDKLIKVWE-LSG 484 (1096)
Q Consensus 411 ~l~~spd~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~l~~h~~~v~~l~~s~d~~--~~~l~s~s-~d~~i~iwd-~~~ 484 (1096)
|.+|||+|.+||+|+.|.+|++.-.+.. +....-.++.-|.+.|..++|..+.. ..+|++++ .|..|++-| ..|
T Consensus 94 c~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred EEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 9999999999999999999999766543 32333335788999999999975421 11566654 577888888 999
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC-------CCCcEEEEEEcCCCCEEEEEe
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-------PGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
+....+.||.+.|.++- +-++.++++|+.|.+|++||++...++..+.. +...|.++++.|.|++|+++.
T Consensus 174 ~~~~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred CcceeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 99999999999998874 22668999999999999999998888765532 124799999999999999998
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC----eEEEEeecCCCCCCcc
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLP 633 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~ 633 (1096)
. +....+||++.++.++.|..|.. .|.++.|+|...++++++.|..|++-|+... -.+.....| ...+.
T Consensus 251 ~----dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i 323 (350)
T KOG0641|consen 251 A----DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAI 323 (350)
T ss_pred C----CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceE
Confidence 7 88999999999999999999988 8999999999999999999999999998642 122333333 44788
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
.+.|+|..--+++.+.|.++.+|-+.
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecCccceeeeccCcceEEEeccC
Confidence 99999999899999999999999763
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=231.83 Aligned_cols=247 Identities=19% Similarity=0.256 Sum_probs=221.9
Q ss_pred ccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 399 ~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
.+++..|+++|.++.|+-||+|.++|+.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|+.|.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34588899999999999999999999999999999999998888 6889999999999999998 899999999999
Q ss_pred EEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC--CeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
+|| .+|+.++.|++|.+.|+.+.|+. +...+++|+.|.++++||-+.. +++..+......|.++.++ +..+++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 999 99999999999999999999965 5679999999999999998754 4455666666788888875 457888
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
|+. ||+++.||++.|+...-+-++ +|++++|+++++..++++-|+++++.|-.+|++++.+.+|.....-..+
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 887 999999999999887776665 8999999999999999999999999999999999999998876556677
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++.....+++|+.||.|.+||+.+.
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccc
Confidence 88888889999999999999999776
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=299.54 Aligned_cols=270 Identities=15% Similarity=0.207 Sum_probs=218.2
Q ss_pred CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC----Ccc
Q 001343 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS----NDL 441 (1096)
Q Consensus 366 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~----~~~ 441 (1096)
+|.+++|+..+.+.... + ...-+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--~------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--L------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--e------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 67888888876544321 0 11124569999999999999999999999999999997642 111
Q ss_pred c-cceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCe
Q 001343 442 R-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (1096)
Q Consensus 442 ~-~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 519 (1096)
. ....+ .+...|.+++|++.... +|++++.||+|++|| .+++.+..+.+|...|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~-~~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVEL-ASRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEe-cccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 11122 34568999999986433 899999999999999 888899999999999999999864 4579999999999
Q ss_pred EEEEEcCCCCeeeEEeCCCCcEEEEEEc-CCCCEEEEEeeccCCCCeEEEEeCCCCe-eeEEEcCcCccceEEEEEeCCC
Q 001343 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQ 597 (1096)
Q Consensus 520 i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 597 (1096)
|++||++++.....+..+ ..+.++.|+ ++|.++++++. ++.|++||+++++ .+..+.+|.. .+..+.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988877777654 578899995 57899999987 9999999998765 5677788877 88899997 67
Q ss_pred CEEEEEEcCCeEEEEeCCCC------eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 598 NHFLAVGEDSQIKFWDMDNV------NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
..+++++.|+.|++||+..+ ..+..+.+|.. .+..++|+|++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 45667766654 7899999999999999999999999997544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=264.73 Aligned_cols=246 Identities=24% Similarity=0.402 Sum_probs=219.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|.+.|.+++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 67899999999999999999999999999999999876544 5678999999999999998 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
..++.+..+..|...+.++.|++. +.++++++.||.+++||+++.+....+..+...+.++.|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 777888889999999999999774 578888888999999999988888888888889999999999999888875
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
++.+++||+.+++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+..++.+..+..+.. .+.++.|+|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCC
Confidence 88999999999999988887766 788999999999999999999999999999888887765544 8999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCC
Q 001343 641 GNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.++++++.|+.|++|++.++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=257.19 Aligned_cols=293 Identities=17% Similarity=0.230 Sum_probs=254.7
Q ss_pred CCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCE
Q 001343 331 DDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 331 ~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
+.+|......+. |.++|..+.|-++.. .|++|+.|..|++|++..++.-. ..++.|..+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCc
Confidence 456777777788 999999999999977 59999999999999998766221 12478888999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE
Q 001343 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1096)
Q Consensus 410 ~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 488 (1096)
+.+.|.++++++++++.|+.+++|+++..+... +|.||.+.|+++.|..... .+++|+.|.+|++|| ....|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999977666 6889999999999998776 699999999999999 7788877
Q ss_pred EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
++. ....+..|+.. ...+++|-.|++||+||.+..........++ .|+++..+++|..+++++. |..+.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 23446666653 3578999999999999999999988887776 8999999999999999987 899999
Q ss_pred EeCCCCeeeEEEcCcCc---cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE
Q 001343 569 WNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1096)
.|+++.+....+..... ...+.+.|+|++.++++|+.||.|+||++.++++...+........|++++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 99999998888865432 246779999999999999999999999999999999998877655799999999999999
Q ss_pred EEECCCcEEEE
Q 001343 646 VTTADNGFKIL 656 (1096)
Q Consensus 646 ~~~~dg~i~iw 656 (1096)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-29 Score=244.57 Aligned_cols=289 Identities=19% Similarity=0.335 Sum_probs=243.3
Q ss_pred CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 333 ~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
.+.+....+.|.+.|.+|... ++ .+.+|+.||.++|||.. |+.... +.||.++|.++
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v 150 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSV 150 (423)
T ss_pred CCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeee
Confidence 455667778899999999998 45 68999999999999976 665543 88999999988
Q ss_pred EEcCCC---CEEEEEECCCeEEEEEccCCCcc-ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC---
Q 001343 413 AWSPDG---NYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG--- 484 (1096)
Q Consensus 413 ~~spd~---~~l~s~~~dg~i~vwd~~~~~~~-~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~--- 484 (1096)
+|--.. ..+++++.|.++++|.++.+... .....-.||...|-++...++|. .+++|+.|.+++||+ ...
T Consensus 151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~ 228 (423)
T KOG0313|consen 151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEED 228 (423)
T ss_pred EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccc
Confidence 885433 36999999999999999877543 22223459999999999999999 899999999999998 211
Q ss_pred ----------------------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEE
Q 001343 485 ----------------------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT 542 (1096)
Q Consensus 485 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 542 (1096)
.++.++.||..+|.++.|.+ ...+++++.|.+|+.||+.+++....+.. +..+.
T Consensus 229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~ 304 (423)
T KOG0313|consen 229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLN 304 (423)
T ss_pred cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-Cccee
Confidence 24567889999999999975 35899999999999999999888776654 45699
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe---eeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCe
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
++.++|..++|++++. +..+++||.+++. ..++|.+|.+ -|..+.|+|.. ..|++|+.|+++++||+++..
T Consensus 305 ~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 305 CISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred EeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 9999999999999998 9999999998753 5677899988 89999999966 467889999999999999877
Q ss_pred -EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 619 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
++..+..|.. .|.++.|+ ++..+++|+.|++|+|+.-
T Consensus 380 ~plydI~~h~D--Kvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 380 APLYDIAGHND--KVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CcceeeccCCc--eEEEEecc-CCceEEeccCcceEEEecc
Confidence 8888888865 89999997 5669999999999999864
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=235.76 Aligned_cols=309 Identities=14% Similarity=0.203 Sum_probs=240.9
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
.....|+.++.|.+|||||. ++|+|+.|.+|+|.|++..--.. ....+..-......-..+.+..|...|+++.|+|.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 34446999999999999999 89999999999999987311000 00000001111111112358899999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe---eCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---EGH 493 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~---~~~ 493 (1096)
...|++|+.|++|+++|+......+.++.+ ....+|.++.|+|.|. +|+.|..-.++++|| .+-++...- .+|
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccccc
Confidence 999999999999999999765444433333 3567899999999999 899999999999999 666665443 579
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-CCCC-cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~-~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.+.|+++.+++ .+.+.++++.||.|++||--+..++..+. .|++ .|.+..|+.+|+++++.+. |..+++|.+
T Consensus 261 t~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWEi 334 (430)
T KOG0640|consen 261 TGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWEI 334 (430)
T ss_pred ccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeeee
Confidence 99999999966 66899999999999999988887776553 3443 8999999999999999987 999999999
Q ss_pred CCCeeeEEEcCcCcc----ceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEE
Q 001343 572 SEGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
.+++++..+.|.... --+...|+....+++.-. ..+.++-||.++...+..+.. +|.+.+..+.-+|.+..+++
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCceee
Confidence 999999999875210 112245677777777654 457899999999877766653 34558999999999999999
Q ss_pred EECCCcEEEEEc
Q 001343 647 TTADNGFKILAN 658 (1096)
Q Consensus 647 ~~~dg~i~iwd~ 658 (1096)
++.|..+++|--
T Consensus 414 csdD~raRFWyr 425 (430)
T KOG0640|consen 414 CSDDFRARFWYR 425 (430)
T ss_pred ecccceeeeeee
Confidence 999999999964
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-29 Score=233.15 Aligned_cols=288 Identities=12% Similarity=0.145 Sum_probs=240.1
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
+...+|+.+++-+.|+.+|. ||.++++|.++.||--.+|+.+.+ +.||++.|+|++.+.+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 44556999999999999999 899999999999999999999875 8999999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-----CCcEEEEE-c-------CC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIKVWE-L-------SG 484 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-----d~~i~iwd-~-------~~ 484 (1096)
.++|++|+.|.++++||+++|+++... .-..+|..+.|+++|. +++.+.. .+.|.++| . ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 999999999999999999999988743 3567899999999999 5554433 36789998 4 34
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
++...+..+...++.+.|.|. +++|++|..||.|.+||++++.... .-..|...|+.+++++|..++++++. |
T Consensus 138 ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----D 211 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----D 211 (327)
T ss_pred CceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----C
Confidence 567788888899999999775 4799999999999999999976655 55778889999999999999999998 9
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCe--EE------------EEeCCCCeEEEEeecCCCC
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ--IK------------FWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~ 629 (1096)
.+-++||..+...++++.... ++++.+++|...+++.|+...- |. +|++-..+.+..+.+| .
T Consensus 212 ttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--F 287 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--F 287 (327)
T ss_pred ccceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--c
Confidence 999999999999999998754 7999999998888888763221 21 2222222334444444 5
Q ss_pred CCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++|++++|+|+|+..++|+.||.|++......
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 59999999999999999999999999866443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=248.80 Aligned_cols=282 Identities=20% Similarity=0.286 Sum_probs=240.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
..+.|.+++|||...+=+|+. ..-.+.||+..+...... +......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 456899999999877555554 356899999887665532 444667899999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~ 501 (1096)
+|...|.|+|||+.+...++ .+.+|..+|..+.|+|++.. .+++|++|+.+++|| .+......+.+|++.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977644455 57899999999999998886 899999999999999 55565568899999999999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC-eeeEEE
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTY 580 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~ 580 (1096)
++|. ++.++++|+.||+|++||.+.......--.|+.+|.++.+-|.|..+++++ ...+++||+.+| +.+..+
T Consensus 161 ~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 9986 457999999999999999998865555557888999999999999999987 779999999855 555555
Q ss_pred cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
..|.. .|+|+++..++..|++++-|+.+++||+.+.+.+..+...+ +|.+++.+|++..++.|..+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehh
Confidence 55776 99999999999999999999999999999989988887655 7999999999999999999998877543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=275.95 Aligned_cols=305 Identities=18% Similarity=0.267 Sum_probs=249.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEe--CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
++..|.+++.+|||. .+|||+ .||.++||+.+.--.. .+.++.. .+........|.+.|+|+.|+|||+|
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 456799999999999 599999 8999999997531100 0111111 22222346789999999999999999
Q ss_pred EEEEECCCeEEEEEccC----------C-----CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 421 VGVAFTKHLIQLYSYAG----------S-----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~----------~-----~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
||+|+.|+.|.||.... | +..+....+.+|...|..++|+|++. +|++++.|++|.+|| .+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 11234456889999999999999999 999999999999999 899
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC------CCcEEEEEEcCCCCEEEEEee
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
+.+..+++|.+.|..+.|.| -|++|++-+.|++|++|+....+.......+ ...+..+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999976 6699999999999999997765555544333 225788999999999999876
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC-----CC------------EEEEEEcCCeEEEEeCCCCeEEE
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QN------------HFLAVGEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~ 621 (1096)
-+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. .. .+++|+.|++|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666678899999999999999999998 9999999972 11 56789999999999998777766
Q ss_pred EeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+..-.. ..|.+++|+|||..|++++.||+|.++.+...
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 5543322 28999999999999999999999999998754
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=221.96 Aligned_cols=274 Identities=15% Similarity=0.218 Sum_probs=237.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 420 (1096)
+|...|.+|+|+-+|.+ ||+|+.|+++.||+++..+.... -...+|.+.|..++|+| ....
T Consensus 18 ~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcc
Confidence 48889999999999994 99999999999999998754432 23778999999999998 5678
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
+++++.|.+|++||+..+++.... . .++.=..+.|+|+|. +++.++.|..|...| .+.+.....+ ....+.-
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne 152 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNE 152 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeee
Confidence 999999999999999999887743 2 334445688999999 899999999999999 6666555444 4456778
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
++|+. ++++++.....|+|.|..+...+.+..+..|...+.++.|+|+|+++++|+. |..+.+||+...-+++.
T Consensus 153 ~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 153 ISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERC 226 (313)
T ss_pred eeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhee
Confidence 88874 4457777777899999999999999999999999999999999999999998 99999999999999999
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
+..+.- +|..+.|+.+|++|+++++|..|-|=++++|..+..+...+ +...++|+|...+||.+++|
T Consensus 227 isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 988876 89999999999999999999999999999999999988655 67899999999999998876
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=266.52 Aligned_cols=281 Identities=18% Similarity=0.303 Sum_probs=248.6
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.|...|.|..|+ ++ ++++|+.|.+|++||..++..+.. .+.||.+.|.++++..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 477889999999 44 589999999999999999887752 288999999999999888999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++|+.|.+++|||+.+|++.. ++.+|.+.|.++...+. .+++|+.|.+|++|+ .++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999888 68899999999998654 789999999999999 8899999999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC-eeeEE
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRT 579 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 579 (1096)
..+ +.++++|+.||+|++||+.+.+++..+.+|...|.++.+.+. ..+++|+. |+.|++||+.+. +++.+
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 874 479999999999999999999999999999999999988766 88999998 899999999999 99999
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+.+|.. .+..+. ..++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.||.+++||+.
T Consensus 409 l~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 409 LQGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred hcCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 999987 554443 35789999999999999999999999999885 33367777765 4689999999999999999
Q ss_pred CCccccc
Q 001343 660 IGLRSLR 666 (1096)
Q Consensus 660 ~~~~~~~ 666 (1096)
++ ...+
T Consensus 483 ~~-~~~~ 488 (537)
T KOG0274|consen 483 SG-TLIR 488 (537)
T ss_pred cC-chhh
Confidence 88 3433
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=229.27 Aligned_cols=284 Identities=15% Similarity=0.214 Sum_probs=245.2
Q ss_pred ccccCCCCEEEEEEcC---CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 401 IFKDVPISVSRVAWSP---DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~sp---d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.||++.|+....+.+.. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 4788999999999997 89999999999988888888887776 7899999999999998877 78999999999
Q ss_pred EEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
++|| .+|..+.+|. |..-|.+++|+. |.++|++|+.+..+|+||++..+. ...+.+|.+.|..+.|....+.+++
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence 9999 9999999987 888899999955 678999999999999999987654 4578899999999999998899998
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
... ++.|++||.+++..++++.... .+.++.++++|+++.++ ..+.|.+||.++..+++.+.... .|.+.
T Consensus 161 Sad----d~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~---nV~SA 230 (334)
T KOG0278|consen 161 SAD----DKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPC---NVESA 230 (334)
T ss_pred ecc----CCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCcc---ccccc
Confidence 765 9999999999999999988654 68889999998766554 55789999999999998887664 68999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcc
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~ 715 (1096)
..+|+...+++|+.|..++.||..++.+...-..+ +.++|.++.|+|+|..
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg-----h~gpVhcVrFSPdGE~------------------------ 281 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG-----HFGPVHCVRFSPDGEL------------------------ 281 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCceeeecccC-----CCCceEEEEECCCCce------------------------
Confidence 99999999999999999999999999543332233 3567888888776654
Q ss_pred cCCCCccCCCCCCccccCCCCCccceeee
Q 001343 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 716 ~~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
.++|+.||+|++|...
T Consensus 282 -------------yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 282 -------------YASGSEDGTIRLWQTT 297 (334)
T ss_pred -------------eeccCCCceEEEEEec
Confidence 4899999999999976
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=226.03 Aligned_cols=273 Identities=17% Similarity=0.261 Sum_probs=224.1
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCC-CeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
-.+.|.+++|||....+++.||-||+|++|+++.. ...- +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 35689999999966668889999999999999874 3321 2356799999999999999999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+-.|+|||.|++|+.|| ....++.++. -.++++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998644 377899999999998876655899999999999999 8888888876 45678887
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC--ee
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TI 576 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~--~~ 576 (1096)
..- -.+++++..++.|.+|++++........ .-.-.+.+++..+|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 653 2588999999999999997665544222 12337899999998888888887 899998888776 55
Q ss_pred eEEEcCcCc--------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 577 KRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 577 ~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
-.+|+.|+. ..|+.++|+|....|+++|.||++.+||-+....+...+.+.. +|++++|+.+|.++|.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 566777763 2466799999999999999999999999988888877776655 999999999999888664
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=235.28 Aligned_cols=288 Identities=15% Similarity=0.227 Sum_probs=240.2
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccce-----eecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS-----QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
-+.++-+.|..|||||+||++|+.||.|.|||..+|+.-+.++ .+--+..+|.|+.|+.|.. .+++|+.||.|
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkI 287 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKI 287 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcE
Confidence 3556779999999999999999999999999999987654321 2345788999999999999 89999999999
Q ss_pred EEEE-cCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 478 KVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
++|. .+|.|++.|. .|+..|+++.|+. |+..+++++.|.++|+.-+.+++.+..+.+|...|+...|++||..+++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 9999 9999999996 8999999999965 6678999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcC-ccceEEEEEeC-CCCEEEEEEcCCeEEEEeCCCCeEEEEeec-CCCCCCc
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNL 632 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v 632 (1096)
++. |++|++|+.++.+++.+|+... +..+..+..-| +...++++...++|+|.++ .|+.+..+.. ....+..
T Consensus 366 aSs----DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 366 ASS----DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDF 440 (508)
T ss_pred ecC----CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCce
Confidence 998 9999999999999999987543 33566665555 5578999999999999998 4667766653 3333456
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCC
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~ 712 (1096)
.++..+|.|.++++.+.|+.++.|...+| ...+.+..+...+. .++-
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvI-----Gl~H--------------------------- 487 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVI-----GLTH--------------------------- 487 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeeccccccc-----cccc---------------------------
Confidence 77889999999999999999999999888 55555555543311 1222
Q ss_pred CcccCCCCccCCCCCCccccCCCCCcccee
Q 001343 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1096)
Q Consensus 713 ~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~ 742 (1096)
.|..+++|+-+.||.+++|.
T Consensus 488 ----------HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 488 ----------HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ----------CcccchhhhhcccchhhhcC
Confidence 34556778899999999995
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=257.86 Aligned_cols=287 Identities=13% Similarity=0.100 Sum_probs=224.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l 421 (1096)
|-..|....+++++.. +++++.+..+..|+...+..+. +.......+.....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4456788888889774 6677788888899876554321 11111111111234789999999999999 89999
Q ss_pred EEEECCCeEEEEEccCCCc----cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCC
Q 001343 422 GVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~----~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~ 496 (1096)
++|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+||| .+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1223468899999999999998643 899999999999999 888899999999999
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCc-EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
|.+++|++ ++.+|++++.||+|++||+++++....+..|.+. +..+.|.+++..+++++.+...++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999987 6689999999999999999999888888877663 45778899988888877655558999999998754
Q ss_pred -eeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 576 -IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 576 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
.......+....+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 44444444443566678899999999887 59999999999998877655432 336788888885
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=231.29 Aligned_cols=283 Identities=18% Similarity=0.310 Sum_probs=234.9
Q ss_pred ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCC-CcEEEEEECCCeEEEEEcCC
Q 001343 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 449 ~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 527 (1096)
.|.+.|.++... ++ .|++|+.||.+++||..|+.+..+.||.++|.+++|..... ...+++++.|.++++|-++.
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 488999999887 45 89999999999999999999999999999999888764432 24699999999999999887
Q ss_pred CCeee----EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC-------------------------CCeeeE
Q 001343 528 MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-------------------------EGTIKR 578 (1096)
Q Consensus 528 ~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~-------------------------~~~~~~ 578 (1096)
+.... ...+|...|.++...++|..+++++. |..|.+|+.. ++.++.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 65543 33488889999999999999999998 9999999932 234567
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
++.||.+ +|..+.|++ ...+++++.|.+|+.||+.++.....+.... .++++..+|..++|++|+.|..|++||.
T Consensus 255 tl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred Eeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCC
Confidence 7889988 899999988 6789999999999999999999988887654 6899999999999999999999999998
Q ss_pred CCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCc
Q 001343 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1096)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i 738 (1096)
+++.
T Consensus 330 R~~~---------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 330 RTGD---------------------------------------------------------------------------- 333 (423)
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 6650
Q ss_pred cceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcc
Q 001343 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1096)
Q Consensus 739 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~ 818 (1096)
+.....
T Consensus 334 -----------gs~v~~--------------------------------------------------------------- 339 (423)
T KOG0313|consen 334 -----------GSVVSQ--------------------------------------------------------------- 339 (423)
T ss_pred -----------CceeEE---------------------------------------------------------------
Confidence 000111
Q ss_pred ccccccccCCCcCCCeeeeeecCCC-cEEEEec-CCeEEEEEcccce-EEEeecCCCCCeeEEEEecCCCcEEEEeeCCC
Q 001343 819 LLMANDVAGVNLEEAVPCIALSKND-SYVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1096)
Q Consensus 819 ~~~~~~~~g~~~~~~v~~l~~s~dg-~~la~~~-dg~v~iwd~~~~~-~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg 895 (1096)
.+.| |...|.++.++|.. ..|++|+ |+++++||+++.+ .+..+.+|...|.++.|.. +..+++|+.|+
T Consensus 340 -----s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~ 410 (423)
T KOG0313|consen 340 -----SLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADN 410 (423)
T ss_pred -----eeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcc
Confidence 1223 77777777887766 4566777 8999999998776 7888999999999999986 66999999999
Q ss_pred eEEEEeec
Q 001343 896 TIHIYNVR 903 (1096)
Q Consensus 896 ~i~iw~~~ 903 (1096)
+|+|+.-.
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99998643
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-27 Score=219.52 Aligned_cols=233 Identities=14% Similarity=0.233 Sum_probs=204.0
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.++||..+++.+.++.+|.+|.+|+.|.++.||-..+|+.+. ++.||.+.|+|+....+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999988888777 6899999999999999999 89999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE-----CCCeEEEEEcC-------CCCeeeEEeCCCCcEEEEEEc
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-----IDGKIKAWLYD-------TMGSRVDYDAPGHWCTTMLYS 547 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s 547 (1096)
| .+|+++..++ ...+|..+.|++ +|++++... ..+.|.++|++ ..++...+..+...++.+.|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999999988 567899999977 445666554 34679999988 445566777788899999999
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCee-eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
|-+++|++|.. +|.|.+||.++|+. +.....|.. .|+.++++++..++++++.|.+-++||..+-+.++++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999987 99999999999854 455566665 8999999999999999999999999999999999998765
Q ss_pred CCCCCccEEEEeCCCCEEEEEEC
Q 001343 627 GGLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
. +|++.+++|-...++.|+.
T Consensus 232 ~---PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 232 R---PVNTAAISPLLDHVILGGG 251 (327)
T ss_pred c---cccceecccccceEEecCC
Confidence 4 7999999997777777654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=243.09 Aligned_cols=301 Identities=18% Similarity=0.263 Sum_probs=233.7
Q ss_pred CCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEE
Q 001343 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1096)
Q Consensus 333 ~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1096)
.|......+. |+..|.++++.|.|.+ |++|+.|.+|++||+........ .++ .+.......|.+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~i~s 219 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQINS 219 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCcccccccce
Confidence 3444455555 7889999999999996 99999999999999976443221 111 112234558999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEccCCCc---------cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-
Q 001343 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSND---------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 412 l~~spd~~~l~s~~~dg~i~vwd~~~~~~---------~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
+.||+.|..|++.+.....+|+|-+..+. ++....-+||...++|.+|+|+.+. .++|++.||+++|||
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv 298 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDV 298 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEec
Confidence 99999999999888888999999765432 2333345799999999999999887 899999999999999
Q ss_pred cCC-ceEEEee-----CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee---eEEeCCCC--cEEEEEEcCCC
Q 001343 482 LSG-RKLFNFE-----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGH--WCTTMLYSADG 550 (1096)
Q Consensus 482 ~~~-~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~--~i~~l~~s~~~ 550 (1096)
.+. +.+..++ +..-+++.++|++ ++.+|++|+.||.|.+|+....... ..-..|.. .|+++.||+||
T Consensus 299 ~~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 299 NNTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred CCchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 333 3333332 3455788899976 7789999999999999997544332 23345554 89999999999
Q ss_pred CEEEEEeeccCCCCeEEEEeCCCCe-eeEEEcCcCc-cceEEEEEeCCCCEEEEEE------cCCeEEEEeCCCCeEEEE
Q 001343 551 SRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRK-KSNGVVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTS 622 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~ 622 (1096)
++|++-+. |..+++||++..+ ++....+... ..-+.++|+|+.+.|++|+ ..|.+++||..+.+.++.
T Consensus 377 ~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 377 NYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred chhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 99999887 9999999998754 4444443322 2445589999999999986 457899999999999999
Q ss_pred eecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 623 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
+..... .|..+.|+|.-+.|++|+.||.+++|-
T Consensus 453 i~i~~a--Svv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 453 IDISTA--SVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ecCCCc--eEEEEeecchhhheeeecCCCceEEEE
Confidence 887754 889999999999999999999999874
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=261.18 Aligned_cols=299 Identities=15% Similarity=0.222 Sum_probs=218.7
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC---CC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DG 418 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---d~ 418 (1096)
.|+++|+|+.||+||+ |||+|+.|+.|+||.+...+........ ....+.. +. -.+.+..+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~------~~~~~~~--~~-~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGD------SSCMYFE--YN-ANSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccc------cchhhhh--hh-hccccCccccccccccc
Confidence 4999999999999999 6999999999999999764432110000 0000000 00 000111111111 01
Q ss_pred C--EEEEEECCCeEEEEEccCC-CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC
Q 001343 419 N--YVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 419 ~--~l~s~~~dg~i~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~ 494 (1096)
+ ..-.+.....+ +.+.... -.-+.+..+.||.+.|.++.|+.++ +|+++|.|++|++|+ ....|+..|. |.
T Consensus 335 ~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn 409 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HN 409 (712)
T ss_pred cccccccccCCccc-cCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cC
Confidence 1 11122222222 2221111 1112334688999999999999876 799999999999999 8888999987 99
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
..|+|++|+|..| +++++|+-||.||||++...+...-...+ .-|++++|.|||++.++|+. +|.+++|+....
T Consensus 410 dfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~l 483 (712)
T KOG0283|consen 410 DFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGL 483 (712)
T ss_pred CeeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEEEEEccCC
Confidence 9999999999854 89999999999999999866655544444 67999999999999999998 999999999988
Q ss_pred eeeEEEcCc-------CccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEE
Q 001343 575 TIKRTYAGF-------RKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 575 ~~~~~~~~~-------~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
+....+.-+ ....|+.+.|.|.. ..+++.+.|..|+|||.++..++..+.+......-....|+.||++|++
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 776654321 11268889988744 4688899999999999999999998887766556677899999999999
Q ss_pred EECCCcEEEEEcCCC
Q 001343 647 TTADNGFKILANAIG 661 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~ 661 (1096)
++.|..|++|+....
T Consensus 564 ~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 564 ASEDSWVYIWKNDSF 578 (712)
T ss_pred eecCceEEEEeCCCC
Confidence 999999999998554
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=221.92 Aligned_cols=283 Identities=18% Similarity=0.248 Sum_probs=228.2
Q ss_pred EEEEEcCCCCcEEEEEe-------CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-CC
Q 001343 348 ISMDFHPSHQTLLLVGS-------SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GN 419 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~-------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~ 419 (1096)
.++.|||--...||++. ..|.+.|-++..++.+.. +. -..-.+.+..++|+++ .+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 57888985332344432 368999999875544432 11 1124568999999996 56
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~ 498 (1096)
.+++++.||++++||... .-..+..++.|...|.++.|++-.++ .++++|.|++|++|+ ..++.+.++.||..-|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 788899999999999543 23344468899999999999997776 678889999999999 88999999999999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEeCCCC-ee
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEG-TI 576 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd~~~~-~~ 576 (1096)
...|+|. ..+.+++++.||++++||++.......+..|..+|.++.|+.-. +.+++++. |+.|+.||+++. .+
T Consensus 152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 9999987 45799999999999999999888888899999999999999855 45666665 999999999875 46
Q ss_pred eEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCC-eEEEEeecCCCCCCccEEEEeC-CCCEEEEEECCCcE
Q 001343 577 KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGF 653 (1096)
Q Consensus 577 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 653 (1096)
+..+.+|.- .|..+.|+|.. ..|++++.|-+++|||...+ ..+.+...|.. -|..+.|++ ++.++|+++.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccce
Confidence 777888876 89999999965 67888999999999999854 45555555544 788999998 77899999999999
Q ss_pred EEEEc
Q 001343 654 KILAN 658 (1096)
Q Consensus 654 ~iwd~ 658 (1096)
.||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-26 Score=219.43 Aligned_cols=281 Identities=15% Similarity=0.235 Sum_probs=232.7
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
..+.|+++.|+++|. ++++++.|.+++|||..+|+.+.+ +..++-.|..+.|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 467899999999999 577888999999999999998864 555677899999988888777
Q ss_pred EEEC--CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 423 VAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 423 s~~~--dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
.++. |.+|+..++.+.+.++ -+.||...|+.++.+|-+. .+++++.|++|++|| ...++...+.....+|
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7776 7899999999998888 6899999999999999998 899999999999999 7677776665444444
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCC--eeeEEeC---CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~---~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
++|.| .|-+++++...+.|++||++... +-..+.. ...+.+.+.|||||++++.+.. .+.+++.|.-+|
T Consensus 146 ~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 45644 66788888877799999998652 2223333 3458899999999999999886 889999999999
Q ss_pred eeeEEEcCcCccc--eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 575 TIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 575 ~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
..+.++.++.... ....+|.|+++++++|+.||+|.+|+++++..+..+.+. +...+.++.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999998876532 245789999999999999999999999999999999885 234889999999877777665 47
Q ss_pred EEEEEcC
Q 001343 653 FKILANA 659 (1096)
Q Consensus 653 i~iwd~~ 659 (1096)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 8888654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=223.85 Aligned_cols=253 Identities=19% Similarity=0.258 Sum_probs=199.2
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccC------------CCc---cccceeecccccCEEEEEEecCCCc
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG------------SND---LRQHSQIDAHVGAVNDLAFAYPNKL 465 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~------------~~~---~~~~~~l~~h~~~v~~l~~s~d~~~ 465 (1096)
.+..|++++.+.+|||||.++|+|+.|..|+|.|++. |.. --.++++..|...|+++.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 3677999999999999999999999999999999871 111 012346778999999999999999
Q ss_pred EEEEEEeCCCcEEEEE-cCCceEEEe--eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE---eCCCC
Q 001343 466 LCVVTCGDDKLIKVWE-LSGRKLFNF--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGH 539 (1096)
Q Consensus 466 ~~l~s~s~d~~i~iwd-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~ 539 (1096)
.|++|+.|++|+++| ......+.+ -....+|.++.|+|+ |.+|++|....++++||+++.++-..- ..|..
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC--CceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 999999999999999 333222222 224568999999995 579999999999999999998887644 34566
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc-CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
.|+++.+++.|+..++++. ||.|++||--+++++.++. .|.+..|++..|..+++++++.+.|..+++|.+.++.
T Consensus 263 ai~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 8999999999999999998 9999999999999999885 4566688999999999999999999999999999999
Q ss_pred EEEEeecCCCCCC---ccEEEEeCCCCEEEEEE-CCCcEEEEEcCCC
Q 001343 619 ILTSTDAEGGLPN---LPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1096)
Q Consensus 619 ~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 661 (1096)
.+..+.+-+..+. -+...|+....+++.-. ..+.+.-||..+.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 9998876533211 12334444444443322 2345555665444
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=246.71 Aligned_cols=292 Identities=21% Similarity=0.283 Sum_probs=239.7
Q ss_pred CCCceE---EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 343 QGSTVI---SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 343 h~~~V~---~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
|...|. .+..++.+.++|.||+.||.|++|++.......+ .++. ..+..|.++|+.++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~~~-asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TPYI-ASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cchh-hhhhhhHhHHhhHHhhcCCC
Confidence 444555 5566665555899999999999999876443211 1111 23777999999999999999
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEE-ecCCCcEEEEEEeCCCcEEEEE-cCC--ceEE-------
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-AYPNKLLCVVTCGDDKLIKVWE-LSG--RKLF------- 488 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~-s~d~~~~~l~s~s~d~~i~iwd-~~~--~~~~------- 488 (1096)
.|++++.|-+|++|+...+. .....++..|.+.|.|+++ .++.. ++|+||-|+.|.+|| ..| +.+.
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998774 2222367789999999999 66776 899999999999999 655 2222
Q ss_pred -Eee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 489 -NFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 489 -~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
.+. |+..+|++++.++ +|..|++|+.++.+++||.++.+.+..+.+|...|..+..+.||+.+++++. |++|
T Consensus 164 ~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI 237 (735)
T ss_pred ccCCCCCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence 233 8889999999866 5679999999999999999999999999999999999999999999999997 9999
Q ss_pred EEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEE
Q 001343 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
++||+...+++.++..|.. .+.++..+|+-..+++|+.||.|+.=|+++......+-...+ +|..+..+...+-+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWV 314 (735)
T ss_pred EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCcee
Confidence 9999999999999999998 699999999999999999999999999998544333333333 6788888765555577
Q ss_pred EECCCcEEEEEcC
Q 001343 647 TTADNGFKILANA 659 (1096)
Q Consensus 647 ~~~dg~i~iwd~~ 659 (1096)
++.|+.|+-|...
T Consensus 315 tTtds~I~rW~~~ 327 (735)
T KOG0308|consen 315 TTTDSSIKRWKLE 327 (735)
T ss_pred eeccccceecCCc
Confidence 8889999999764
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=245.12 Aligned_cols=269 Identities=17% Similarity=0.291 Sum_probs=230.0
Q ss_pred ceeecCCCce-eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCc
Q 001343 317 EVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL 395 (1096)
Q Consensus 317 ~v~~~~~~~~-~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 395 (1096)
.++...+... +|+..+..-..+..++ .+.|+++.|+++|+ +||+|..+|.|.|||..+.+.+..
T Consensus 190 ~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~------------- 254 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT------------- 254 (484)
T ss_pred eEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------
Confidence 3444433333 8888776644444455 89999999999999 699999999999999988776653
Q ss_pred ccccccccc-CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC
Q 001343 396 PFQASIFKD-VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1096)
Q Consensus 396 ~~~~~~~~~-h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d 474 (1096)
+.+ |...|-+++|. +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++++|+.|
T Consensus 255 ------~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnD 322 (484)
T KOG0305|consen 255 ------LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGND 322 (484)
T ss_pred ------ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCc
Confidence 555 99999999998 77899999999999999998776554 3889999999999999999 89999999
Q ss_pred CcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE--ECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCC
Q 001343 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST--AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1096)
Q Consensus 475 ~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 551 (1096)
+.+.||| ....++..+..|.+.|.+++|+|-.. .+|++| +.|++|++||..++..+... ..+..|.++.|++..+
T Consensus 323 N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 323 NVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSV-DTGSQVCSLIWSKKYK 400 (484)
T ss_pred cceEeccCCCccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEeccc-ccCCceeeEEEcCCCC
Confidence 9999999 78889999999999999999999765 588887 46999999999977666554 3456899999999998
Q ss_pred EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
.++++.. ..++.|.||+..+.+.+..+.+|.. .|..++++|+|..+++|+.|.++++|++-..
T Consensus 401 Ei~sthG--~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ELLSTHG--YSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEecC--CCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 8887643 3477999999999999999999998 7889999999999999999999999998764
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=212.85 Aligned_cols=249 Identities=16% Similarity=0.192 Sum_probs=211.7
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
+-+.+|...|.+++|+.+|..|++|+.|+++++|+++..+.... ....+|.+.|-.++|.|.... .+++++.|++|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEE
Confidence 34778999999999999999999999999999999998744433 256799999999999998776 8999999999999
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
|| ..++++.......+.+. +.|+| +|.++++++.|..|.+.|.++.+....... ...+..++|+.++.+++....
T Consensus 92 wd~r~~k~~~~i~~~~eni~-i~wsp--~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENIN-ITWSP--DGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred EEeccCcEEEEeeccCcceE-EEEcC--CCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecC
Confidence 99 99999988876555554 45655 678999999999999999987766554332 235778888877776665543
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
.|.|.|.....-+++..++.|.. ...|+.|+|+|++|++|+.|..+-+||++.--+++.+.-..- +|..+.|+
T Consensus 168 ----lG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS 240 (313)
T KOG1407|consen 168 ----LGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFS 240 (313)
T ss_pred ----CceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEec
Confidence 79999999999999999999987 677899999999999999999999999998888888877665 89999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
-+|++||+++.|..|-|=++.+|
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cCcceeeccCccceEEeEecccC
Confidence 99999999999998888777666
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=243.83 Aligned_cols=277 Identities=15% Similarity=0.224 Sum_probs=236.9
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d 427 (1096)
.-++|+..+ .||+| ....|.+|+..+++...- ..-+...|+++.|+++|.+||+|..+
T Consensus 181 nlldWss~n--~laVa-lg~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVA-LGQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEE-ecceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 446788554 58876 567999999999885432 22247899999999999999999999
Q ss_pred CeEEEEEccCCCccccceeecc-cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE-EeeCCCCCeEEEEeee
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-NFEGHEAPVYSICPHH 504 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~-~~~~~~~~v~~~~~~~ 504 (1096)
|.|.|||..+.+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+| ...+... .+.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999887776 4666 99999999998 34 799999999999999 5555444 4899999999999977
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
++.++++|+.|+.+.|||.........+..|...|.+++|+|-. ..||+|+. ..|+.|++||..+++.+..+...
T Consensus 312 --d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 312 --DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred --CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC
Confidence 67899999999999999998889999999999999999999954 56666654 34899999999999999888764
Q ss_pred CccceEEEEEeCCCCEEEEE--EcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 584 RKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 584 ~~~~i~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
. .|+.+.|++..+.|+++ ..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 69999999998777774 4677999999999999999988876 8999999999999999999999999998664
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=229.21 Aligned_cols=293 Identities=16% Similarity=0.225 Sum_probs=233.9
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecc----cccCccccccccccCCCCEEEEEEcCC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM----AACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
.|.-+|+||+++|+++ +..+++.+|+|.=|++.+|+.... +|.- .....+.+..- ++|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 4889999999999999 589999999999999999985421 1111 11122222222 489999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~ 496 (1096)
|+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... .+++++.|++|++|+ .....+.++.||++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999988777 5889999999999987666 799999999999999 777888899999999
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1096)
|.++.... -...+-+|+.|+++++|++ ..+....+.++.+.+-|++|-.+ ..+++|+. +|.|.+|++.+.++
T Consensus 289 v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccCc
Confidence 99998754 3356666779999999999 45556677788888999999654 56778876 99999999999988
Q ss_pred eEEEcCcCc-----------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC----eEEEEeecCCCCCCccEEEEeCCC
Q 001343 577 KRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 577 ~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
+.+....++ .-|++++..|..+++++|+.+|.|++|-+..+ .++..+.. .+.|++++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCC
Confidence 877653221 15678899999999999999999999999877 34444443 3479999999999
Q ss_pred CEEEEE-ECCCcEEEE
Q 001343 642 NLLAVT-TADNGFKIL 656 (1096)
Q Consensus 642 ~~l~~~-~~dg~i~iw 656 (1096)
+.+++| +....+--|
T Consensus 438 k~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRW 453 (479)
T ss_pred CEEEEeccccccccee
Confidence 955555 444444444
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=225.22 Aligned_cols=283 Identities=17% Similarity=0.203 Sum_probs=247.1
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
..|+++...|... .+.+|+.|..+.++|...++.+.. +.||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4688888888855 689999999999999998887753 99999999999999999999999
Q ss_pred ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC--CCCCeEEEE
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYSIC 501 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~--~~~~v~~~~ 501 (1096)
+.|..|+||......... ....|.++|+.+..+|.|. +|++++.|++..+.| .+|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766544 4668999999999999999 899999999999999 88888766553 234588999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
||| ||.++.+|..||.++|||+........+.+|.++|.+++|+.+|-+|++++. |+.|++||++..+..+++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 988 7789999999999999999999999999999999999999999999999987 8889999999999888888
Q ss_pred CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
......+..+.|.+.|.+++.++.|=+|++++-.+.+.......+.+.+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 77766799999999999999998887888887666554444444444457899999999999999999999888754
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=240.91 Aligned_cols=283 Identities=16% Similarity=0.304 Sum_probs=240.2
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEE-EE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VA 413 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~ 413 (1096)
++.+.++ |...|..+++.+.. .+++||.||++++|+-..++.+.. +.+.+|.+.|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccce
Confidence 3455665 99999999999887 488999999999999766655432 347778888888 88
Q ss_pred EcC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeC
Q 001343 414 WSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492 (1096)
Q Consensus 414 ~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 492 (1096)
+-+ ++-.|++|+.|++|.+|...+...+. .+.+|...|.++....++. ++|||.|.++++| ..+++...+.+
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW-~~~~l~~~l~g 138 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVW-RIGELVYSLQG 138 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEe-cchhhhcccCC
Confidence 886 55569999999999999999988777 6899999999999887774 8999999999999 45667777999
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
|+..|+++...|.. .++||+.|.+|++|. .+.....+.+|...|..+++-+++. +++|+. ||.|+.|++
T Consensus 139 H~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~- 207 (745)
T KOG0301|consen 139 HTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL- 207 (745)
T ss_pred cchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec-
Confidence 99999999987642 899999999999994 4677888999999999999988765 556665 999999999
Q ss_pred CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
+|+.+.++.+|.. .+.++....++..++++++|++++||+.. ++.+.+..+.. .|+++.+-++|. +++|++||.
T Consensus 208 ~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~ 281 (745)
T KOG0301|consen 208 DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGR 281 (745)
T ss_pred cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCce
Confidence 8999999999998 88889988888999999999999999987 77888877765 789999888876 568889999
Q ss_pred EEEEEcCCC
Q 001343 653 FKILANAIG 661 (1096)
Q Consensus 653 i~iwd~~~~ 661 (1096)
|+||.....
T Consensus 282 VrVfT~~k~ 290 (745)
T KOG0301|consen 282 VRVFTVDKD 290 (745)
T ss_pred EEEEEeccc
Confidence 999987643
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=231.00 Aligned_cols=301 Identities=16% Similarity=0.241 Sum_probs=231.3
Q ss_pred eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC----eeeEEEcCcCccceEEEEEeCCCCEEEEEEcC
Q 001343 531 RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1096)
Q Consensus 531 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1096)
...+..+...|.++++.|.|..+++|+. |..|++||+... +..+.+.......+.++.|++.|..|++.+..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 3455667778999999999999999998 999999998753 23344444445589999999999999999999
Q ss_pred CeEEEEeCCCCeEEEEeec----------CCCCCCccEEEEeCC-CCEEEEEECCCcEEEEEcCCCccccccccCCCccc
Q 001343 607 SQIKFWDMDNVNILTSTDA----------EGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEA 675 (1096)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~----------~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 675 (1096)
...+++|.+..+......+ .+|...+++.+|+|. ...+++++.||+++||++.+....++.+.......
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 9999999887766655443 245568899999995 47889999999999999988766566665555555
Q ss_pred ccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEE
Q 001343 676 LRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV 755 (1096)
Q Consensus 676 ~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 755 (1096)
.+.+++.++|++| ++++|+|..||.|.+|+..........
T Consensus 316 ~Rv~~tsC~~nrd-------------------------------------g~~iAagc~DGSIQ~W~~~~~~v~p~~--- 355 (641)
T KOG0772|consen 316 KRVPVTSCAWNRD-------------------------------------GKLIAAGCLDGSIQIWDKGSRTVRPVM--- 355 (641)
T ss_pred cccCceeeecCCC-------------------------------------cchhhhcccCCceeeeecCCcccccce---
Confidence 5666777776655 455688889999999997421111111
Q ss_pred EcCCCCCCcc--cEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCC
Q 001343 756 TMPESTDTSS--KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEA 833 (1096)
Q Consensus 756 ~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~ 833 (1096)
.... .|.. .|+|+.||+||++|++-+.|+++++|++..-. +++. ...|......
T Consensus 356 ~vk~--AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k---------------------kpL~-~~tgL~t~~~ 411 (641)
T KOG0772|consen 356 KVKD--AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK---------------------KPLN-VRTGLPTPFP 411 (641)
T ss_pred Eeee--ccCCCCceeEEEeccccchhhhccCCCceeeeeccccc---------------------cchh-hhcCCCccCC
Confidence 1111 1555 89999999999999999999999999985422 1111 1111113456
Q ss_pred eeeeeecCCCcEEEEecC-------CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEE
Q 001343 834 VPCIALSKNDSYVMSATG-------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (1096)
Q Consensus 834 v~~l~~s~dg~~la~~~d-------g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw 900 (1096)
-+.++|||+.++|++|.. |++.+||..+...+..+.-....|..+.|+| .-+.|+.|+.||++++|
T Consensus 412 ~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 412 GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP-KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc-hhhheeeecCCCceEEE
Confidence 678999999999999861 5699999999999999888888999999999 88899999999999987
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=243.74 Aligned_cols=255 Identities=11% Similarity=0.129 Sum_probs=194.7
Q ss_pred EeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCc-
Q 001343 363 GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSND- 440 (1096)
Q Consensus 363 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~- 440 (1096)
|+.++.|++|+..+...+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556777888766543332 37899999999999996 78999999999999999986432
Q ss_pred c----ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE
Q 001343 441 L----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1096)
Q Consensus 441 ~----~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (1096)
. .....+.+|...|.+++|+|++.. +|++++.|++|++|| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357789999999999999874 568999999999999 7788777776 667899999977 678999999
Q ss_pred CCCeEEEEEcCCCCeeeEEeCCCCcEEE-----EEEcCCCCEEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCcc-ce
Q 001343 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTT-----MLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKK-SN 588 (1096)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~-----l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~-~i 588 (1096)
.|+.|++||++++.....+..|.+.+.+ ..|++++.++++++.++..++.|++||+++ ++++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999999888888888765432 345689999999887544456899999985 5666655443322 22
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC
Q 001343 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
......+++.++++|+.|+.|++|++..+. +..+....+..++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 223334457888999999999999998764 3334433344578899999964
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-25 Score=245.43 Aligned_cols=248 Identities=16% Similarity=0.223 Sum_probs=199.5
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcc----------ccceeecccccCEEEEEEec-CCCcEEEEEEeCC
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL----------RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDD 474 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~----------~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d 474 (1096)
-..|.....++|+..+++++.+.....|+...+..+ .....+.+|.+.|++++|+| ++. +|++|+.|
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~D 97 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASED 97 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeCC
Confidence 345666667778777777777777777775544221 11224779999999999999 777 89999999
Q ss_pred CcEEEEE-cCC-------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEE
Q 001343 475 KLIKVWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLY 546 (1096)
Q Consensus 475 ~~i~iwd-~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 546 (1096)
++|++|| .++ .++..+.+|...|.+++|+|.. +.+|++++.|++|++||++++.....+..|...|.+++|
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence 9999999 443 3567889999999999998853 368999999999999999999888888889999999999
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE----cCCeEEEEeCCCCe-EEE
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVN-ILT 621 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~ 621 (1096)
+|+|.+|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. .+.
T Consensus 177 spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 177 NLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred ECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 999999999987 999999999999999999988765556678888888887765 47899999998754 333
Q ss_pred EeecCCCCCCccEEEEeCCCCEEEEEE-CCCcEEEEEcCCC
Q 001343 622 STDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 661 (1096)
....+. ...+....|++++++|++++ .|+.|++||+.++
T Consensus 253 ~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 253 TVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 333322 22456678899999999888 4999999999887
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=208.09 Aligned_cols=274 Identities=14% Similarity=0.203 Sum_probs=222.2
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC--CCcEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~--d~~i~ 478 (1096)
.+..-.+.|+++.|+++|.+|++++.|.++++||..+++..+ ++..++-.|..++|..... .++.++. |.+|+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIR 83 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceE
Confidence 466678899999999999999999999999999999998887 5667888899999988887 5666665 89999
Q ss_pred EEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
.-+ .+.+.++.|.||...|++++.+|.+ +.+++++.|++|++||++...+...+.....+ .++|.|.|-.+|++.
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALAN 159 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEec
Confidence 999 8999999999999999999998865 68999999999999999988777766555544 478999999999887
Q ss_pred eccCCCCeEEEEeCCCC--eeeEEEcCc--CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCc-
Q 001343 558 TSKDGDSFLVEWNESEG--TIKRTYAGF--RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL- 632 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~--~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v- 632 (1096)
. ...|++||++.. .+-.++.-. .......+.|+|+|++++.++..+.+++.|.-+|..+.++..+.....+
T Consensus 160 ~----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 160 G----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred C----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 5 559999999853 333343322 2236788999999999999999999999999999999998877654322
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
....|.||++++++|+.||+|.+|+++++. ....+.+. ..+++.++.|+|.-...
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~-~v~~~~~~----~~~~~~~~~fnP~~~mf 290 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGK-KVAVLRGP----NGGPVSCVRFNPRYAMF 290 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCc-EeeEecCC----CCCCccccccCCceeee
Confidence 467899999999999999999999999984 44444443 22345556666654443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=226.86 Aligned_cols=281 Identities=20% Similarity=0.232 Sum_probs=235.3
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccce-------------ee--cccccCEEEEEEecCCCcE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS-------------QI--DAHVGAVNDLAFAYPNKLL 466 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------~l--~~h~~~v~~l~~s~d~~~~ 466 (1096)
+..|.-+|.|++++||++++++++.+++|.=|++.+|+..+.+. .. .+|...|.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 56689999999999999999999999999999999887431110 01 37889999999999999
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEE
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 545 (1096)
+|++|+.|..|.||+ .+.+.++.+.+|.+.|.+++|-.. ...+++++.|++|++|+++....+.++-+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecC--ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 999999999999999 999999999999999999999653 36799999999999999999888889999999999999
Q ss_pred EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec
Q 001343 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
...-++.+.+++. |.++++|++. ....-.|.++.+ .+.|++|-. ..++++|+.+|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEecc-ccceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 9888888888877 9999999994 334445666655 788888865 47899999999999999999888876543
Q ss_pred CCC----------CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 626 EGG----------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 626 ~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
..+ ...|++++..|...++++|+.+|.|++|.+.++.+.+..+...+ ..+.|++++|+++|+.++++
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccCCCEEEEe
Confidence 211 12688999999999999999999999999999865555444433 45679999999999977555
Q ss_pred C
Q 001343 696 G 696 (1096)
Q Consensus 696 ~ 696 (1096)
.
T Consensus 444 i 444 (479)
T KOG0299|consen 444 I 444 (479)
T ss_pred c
Confidence 3
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-26 Score=239.86 Aligned_cols=241 Identities=17% Similarity=0.239 Sum_probs=207.3
Q ss_pred EEEEc-CCCCEEEEEECCCeEEEEEccCCCcc---ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-
Q 001343 411 RVAWS-PDGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG- 484 (1096)
Q Consensus 411 ~l~~s-pd~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~- 484 (1096)
.+..+ |.++||.+||.||.|++|++..-... .....+..|...|+.+....+++ .|+++|.|-+|++|+ ..+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 36788999999999999998643321 12335788999999999999999 799999999999999 555
Q ss_pred -ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe--ee--------EEe-CCCCcEEEEEEcCCCCE
Q 001343 485 -RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RV--------DYD-APGHWCTTMLYSADGSR 552 (1096)
Q Consensus 485 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~l~~s~~~~~ 552 (1096)
-++.++..|...|.|+++. ..+...+++||.|+.|.+||++++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6788899999999999983 23557999999999999999997633 11 122 55568999999999999
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCc
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1096)
+++|+. ++.|++||.++++.+..+.||.. .|.++..+++|..+++++.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 999987 99999999999999999999998 899999999999999999999999999999999999988876 79
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999998887664
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=209.92 Aligned_cols=250 Identities=14% Similarity=0.266 Sum_probs=207.8
Q ss_pred ceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 336 ~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
.....+.-.+.+..|+|+++....+++++.||+++|||+..... +.+.++.|...|.++.|+
T Consensus 52 ~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 52 QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWN 113 (311)
T ss_pred EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccc
Confidence 34455667889999999999887899999999999999543221 223488999999999999
Q ss_pred C-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeC
Q 001343 416 P-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEG 492 (1096)
Q Consensus 416 p-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~ 492 (1096)
+ +++.+++++-|++|++|+...++.+. ++.||...|....|+|.... +++++|.|+++++|| ..|+.+. +..
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~-i~a 188 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS-IEA 188 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE-EEe
Confidence 9 56677888999999999998877666 68999999999999998776 899999999999999 5566665 889
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCC-EEEEEeeccCCCCeEEEEe
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~-~l~~~~~~~~~~~~i~iwd 570 (1096)
|...|.++.|+.. +...+++|+.|+.|++||++.... +..+.+|+-.|..+.|||... .|++++. |-++++||
T Consensus 189 h~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~ 263 (311)
T KOG0277|consen 189 HNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWD 263 (311)
T ss_pred ccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEecc
Confidence 9999999999876 457999999999999999987554 557888888999999999764 5667776 99999999
Q ss_pred CCCCe-eeEEEcCcCccceEEEEEeC-CCCEEEEEEcCCeEEEEeC
Q 001343 571 ESEGT-IKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 571 ~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~ 614 (1096)
...+. .+.+...|.. .+..+.|++ ++.++++++-|+.++||+.
T Consensus 264 ~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 264 PERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 98554 4555555555 788888887 5678999999999999984
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=228.66 Aligned_cols=246 Identities=20% Similarity=0.277 Sum_probs=210.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.+.|+.+.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 67799999999999999999999999999999998876 233346888999999999999999 889999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.+.+...++.||++.|+++.|.-.. ..+++|+.|.+|+.||+....+..+.- ....+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 8889999999999999999986543 349999999999999999866655442 33345566655 445666665
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC--CCCccEEEEe
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFS 638 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s 638 (1096)
|+.|++||.++.........+. .++++..++++..+++++.|.++.+.|+++.+....+...+. ....+.+.||
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 8899999999999999988765 799999999999999999999999999999998888765431 2257889999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|++.|+++|+.||.|+||++.++
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc
Confidence 99999999999999999999877
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=226.28 Aligned_cols=282 Identities=14% Similarity=0.202 Sum_probs=230.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+|.+.|.|++=+|..-..+|+|+.||.|+|||+.+..+..+ +..|.+.|..|+++. ..+
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~~ 122 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TSF 122 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cce
Confidence 59999999999999844799999999999999998877654 788999999999987 778
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++++.|.+|+.|.++.. ..+ ++. -...+..+.-+..+. .++|||. .|.||| ....++..+.--...|.++
T Consensus 123 ~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 123 FTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred EEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeEE
Confidence 89999999999998863 333 232 244566777666666 7888885 488999 8888999988778889999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC-eeeEE
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRT 579 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 579 (1096)
.|+|... ..|++++.|+.|.+||++....+...... ..-+.++|+|.+-.++++.. |..++.+|++.. .++..
T Consensus 194 kfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 194 KFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMRNLSRPLNV 267 (433)
T ss_pred ecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhhhhcccchh
Confidence 9998754 58888889999999999998887655432 24678999996666666665 999999999864 46677
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+.+|.. .+..+.|+|.|.-|++|+.|.+|+||..+.+.....+.... ...|.++.|+-|.+++++|++|+.|++|...
T Consensus 268 ~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 268 HKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-hheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 778877 88899999999999999999999999998775544332221 2378999999999999999999999999875
Q ss_pred CC
Q 001343 660 IG 661 (1096)
Q Consensus 660 ~~ 661 (1096)
..
T Consensus 346 As 347 (433)
T KOG0268|consen 346 AS 347 (433)
T ss_pred hh
Confidence 54
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=214.90 Aligned_cols=295 Identities=13% Similarity=0.189 Sum_probs=241.7
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
++++.+. |++.|+.|+...... ++.+++.|.+.+||.+++|.++.+ +.||.+.|++|.|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF 198 (481)
T ss_pred eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence 4455555 999999999988777 899999999999999999999875 8899999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEc------cC--------CC----------------------cc-ccceeecccccCEEEE
Q 001343 415 SPDGNYVGVAFTKHLIQLYSY------AG--------SN----------------------DL-RQHSQIDAHVGAVNDL 457 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~------~~--------~~----------------------~~-~~~~~l~~h~~~v~~l 457 (1096)
++.+.++++++.|++..||.. .. ++ .+ -.+..+.+|.+.|.++
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 999999999999999999972 11 00 01 1223578999999999
Q ss_pred EEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEe
Q 001343 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYD 535 (1096)
Q Consensus 458 ~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~ 535 (1096)
.|...|+ .+++++.|.+..+|| .+|..+..+.||....+.++-+|. ..++++.+.|.+.++||++.. ..+..+.
T Consensus 279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeec
Confidence 9999999 899999999999999 999999999999999999998884 478999999999999999843 3355889
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe-eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 536 ~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
+|...|++..|..+. .+++++. |.+|++||+++.+ ++.++.... +++.++.+..+..|+.--++..|++||+
T Consensus 355 GHtdtVTS~vF~~dd-~vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDD-RVVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ccccceeEEEEecCC-ceeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEec
Confidence 999999999998765 5677775 9999999998764 556665533 6777888887778888888899999999
Q ss_pred CCCeEEEEe--ecCCCCCCccEEEEeCCC--CEEEEEECCCcEEEEEcCCC
Q 001343 615 DNVNILTST--DAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 615 ~~~~~~~~~--~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~ 661 (1096)
....+.... .-.+|..-|.|++|..+- .-|++++.|..+.-|++...
T Consensus 428 nG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 428 NGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 765443322 223344478999998644 56789999999999998654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=248.46 Aligned_cols=255 Identities=19% Similarity=0.357 Sum_probs=220.0
Q ss_pred eeecCCCCcceEEe--ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDLPRTVAVS--LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~--l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|+... +..+.+ .+|.+.|++++|..-+. +|++|+.|.+++|||..+|++... +.+
T Consensus 232 ~~~~~~--~~~i~~~l~GH~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~C~~~-------------------l~g 289 (537)
T KOG0274|consen 232 LWDLNN--GYLILTRLVGHFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGECTHS-------------------LQG 289 (537)
T ss_pred Eeeccc--ceEEEeeccCCCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCcEEEE-------------------ecC
Confidence 566554 444444 55999999999998555 799999999999999999999864 889
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
|.+.|.++... +.++++|+.|.+|++|+++++.++. .+.+|.++|.++... +. ++++|+.|++|++|| .+
T Consensus 290 h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 290 HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred CCceEEEEEcc--CceEeeccCCceEEEEeccCcceEE---EeccccccEEEEEec--CC--EEEEEecCceEEEEEhhh
Confidence 99999999875 4578889999999999999998887 567799999999998 55 899999999999999 99
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
+++++++.+|...|+++.+.. . ..+++|+.|++|++||+++. ++...+..|..-+..+. ..+++|++++.
T Consensus 361 ~~cl~sl~gH~~~V~sl~~~~--~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~a---- 431 (537)
T KOG0274|consen 361 GKCLKSLSGHTGRVYSLIVDS--E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSA---- 431 (537)
T ss_pred ceeeeeecCCcceEEEEEecC--c-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccc----
Confidence 999999999999999997733 2 68999999999999999999 88889999988775555 45778999987
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
|+.|++||..++++++++.+.+...+..+++. ...+++++.||.+++||+++++....+
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 99999999999999999999532367777665 578999999999999999999888766
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=223.88 Aligned_cols=241 Identities=17% Similarity=0.257 Sum_probs=201.0
Q ss_pred cccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
+.||...|.|++=+|.. ..+|+|+.||.|++||+....+++ ++.+|.+.|..+++.. . .+++++.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 68899999999999986 889999999999999999987777 6889999999999987 3 68999999999999
Q ss_pred EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 481 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
...+.++.++.+. +.+..+.-+. .+..++++|. .|.|||.+...++..+.-....|.++.|+|....++.++.
T Consensus 135 k~~~~p~~tilg~-s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 135 KIDGPPLHTILGK-SVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eccCCcceeeecc-cccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--
Confidence 9777788887653 3466666544 3356777775 5889999988888888888889999999998876665443
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC-eEEEEeecCCCCCCccEEEEeC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
.|+.|.+||++++.+++.+.-.. ..+.++|+|.+-.|++|++|..++.||++.- .++.....|.. .|.+++|+|
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs--AV~dVdfsp 282 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS--AVMDVDFSP 282 (433)
T ss_pred -cCCceEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhcccce--eEEEeccCC
Confidence 29999999999999887765432 3456999998778889999999999999863 45666666654 899999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001343 640 EGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 640 ~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.|+-+++|+.|.+|+||....+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CcchhccccccceEEEeecCCC
Confidence 9999999999999999998665
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=225.55 Aligned_cols=248 Identities=16% Similarity=0.241 Sum_probs=207.0
Q ss_pred cceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 335 ~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
....+++. .++.|.++.|-.||+ |||+|...|.|+|+|+.+...++ .+.+|+.+|..+.
T Consensus 58 ~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~iLR-------------------~~~ah~apv~~~~ 117 (487)
T KOG0310|consen 58 RSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVILR-------------------QLYAHQAPVHVTK 117 (487)
T ss_pred hhhhhhHHhhccceeEEEeecCCe-EEEccCCcCcEEEeccccHHHHH-------------------HHhhccCceeEEE
Confidence 33444444 788999999999999 89999999999999966533332 3888999999999
Q ss_pred EcCC-CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC-CceEEEe
Q 001343 414 WSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS-GRKLFNF 490 (1096)
Q Consensus 414 ~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~-~~~~~~~ 490 (1096)
|+|+ +..+++|+.|+.+++||+.++.. ...+.+|++.|.|.+|+|-... .++|||.||.|++|| .. +..+..+
T Consensus 118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~h-ivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDH-IVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred ecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCe-EEEecCCCceEEEEEeccCCceeEEe
Confidence 9995 55677888899999999999764 3368899999999999997765 899999999999999 43 3667777
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE-EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
. |..||-.+.+.| .|..|++++ ...+++||+-++..... ...|...|+|+.+..++..|++++- |+.+++|
T Consensus 194 n-hg~pVe~vl~lp--sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL----D~~VKVf 265 (487)
T KOG0310|consen 194 N-HGCPVESVLALP--SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL----DRHVKVF 265 (487)
T ss_pred c-CCCceeeEEEcC--CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc----ccceEEE
Confidence 6 999999999977 446777776 46899999997766654 4449999999999999999999998 9999999
Q ss_pred eCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 570 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
|+.+.+.+..+.-.. +|.+++.+|++..++.|..+|.+.+-+...
T Consensus 266 d~t~~Kvv~s~~~~~--pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 266 DTTNYKVVHSWKYPG--PVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EccceEEEEeeeccc--ceeeEEecCCCceEEEecccceeeeehhhc
Confidence 999999988877643 788899999999999999999887774433
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=223.94 Aligned_cols=214 Identities=12% Similarity=0.147 Sum_probs=160.5
Q ss_pred ccccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEccCCCccc---cceeecccccCEEEEEEecCCCcEEEEEEeCCCc
Q 001343 401 IFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~ 476 (1096)
++.+|...|+.+.|+| +..+||+|+.|..|+||.+..|-..+ .-..+.+..-.|.++.|+|.... |+..+.-|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILASGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEeccCce
Confidence 4889999999999999 67789999999999999998442211 11123344557889999998774 444555899
Q ss_pred EEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCC-cEEEEEEcCCCCEE
Q 001343 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGH-WCTTMLYSADGSRL 553 (1096)
Q Consensus 477 i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-~i~~l~~s~~~~~l 553 (1096)
++||| .+++.+..+.+|...|.+..|+ .||.++++.+.|..|+|||.+.... +.....|.+ .-..+.|.-+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Ws--eDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWS--EDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccc--cCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999 8999999999999999999995 4889999999999999999986544 344455554 34567777666677
Q ss_pred EEEeeccCCCCeEEEEeCCCC-eeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCe
Q 001343 554 FSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN 618 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 618 (1096)
++.+.+......+++||.+.. ..++++.......+..--|.||.++++.++ .+.+++.+.+...+
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ 296 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence 777765555678999998763 445555444333455567889888766555 67888888887654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=206.61 Aligned_cols=277 Identities=16% Similarity=0.179 Sum_probs=214.4
Q ss_pred ccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 403 KDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 403 ~~h~~~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
....+.|.+|+||| ...+++.++.||+||+|+++....... +....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678999999999 556666889999999999987422222 24667999999999999998 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.++ .+..+..|.++|..+.|-+..+-..|++|+.|.+|++||.+....+..+..+.. ++++..- ..+++++..
T Consensus 101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~--~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVL--YPMAVVATA-- 174 (347)
T ss_pred ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhcc--CceeEEEec--
Confidence 555 677888899999999998776667899999999999999998888877766543 5555443 235555554
Q ss_pred CCCCeEEEEeCCCCee-eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC--eEEEEeecCCC-------CC
Q 001343 561 DGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGG-------LP 630 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 630 (1096)
+..|.+|+++++.. .+.....-...+.+++...+....+.|+-+|.+.|..++.+ +.-.++..|.. .-
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 88999999976543 33333334447888888888888899999999999999876 33333433331 23
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecC
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
.|++++|+|.-..|++++.||++.+||-... ..++..+. ...+|++..|+.+|.++|-..
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~~-----~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSET-----HPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh-hhhhccCc-----CCCccceeEecCCCCEEEEEe
Confidence 5889999999999999999999999997655 33443333 355789999999999985543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=243.81 Aligned_cols=228 Identities=16% Similarity=0.213 Sum_probs=193.3
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEE--CCCeEEEEEccCCC---------ccccceeecccccCEEEEEEecCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAF--TKHLIQLYSYAGSN---------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT 470 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~--~dg~i~vwd~~~~~---------~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s 470 (1096)
+..++..|.+++.+|||..+|+|+ .||.++||+.+.-- ..+.+.....|.+.|+|+.|+|||+ +||+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEee
Confidence 344567899999999999999999 89999999875211 1233345678999999999999999 8999
Q ss_pred EeCCCcEEEEE-cC-------C-----------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee
Q 001343 471 CGDDKLIKVWE-LS-------G-----------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR 531 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 531 (1096)
||+|+.|.||+ .. | ++...+.+|...|..++|+| ++.++++++.|++|.+|+..+.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC--CccEEEEecccceEEEEccccceee
Confidence 99999999999 42 1 25677899999999999987 7789999999999999999999889
Q ss_pred eEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc-----cceEEEEEeCCCCEEEEEE--
Q 001343 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVG-- 604 (1096)
Q Consensus 532 ~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-- 604 (1096)
..+.+|...|..+.|.|-|+++++-+. |+.|++|++.+....+.+.++-+ ..+..+.|+|||.+|++..
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsd----Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSD----DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeeecccccccceEECCccCeeeeecC----CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 999999999999999999999999987 99999999888888888776544 2456689999999999853
Q ss_pred --cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 605 --EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 605 --~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
.-.++.|.+..+-+.-..+-+|.. ++.++.|+|
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFnP 275 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFNP 275 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCC--ceEEEEeCh
Confidence 345788998877777777777766 899999998
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=206.50 Aligned_cols=242 Identities=19% Similarity=0.247 Sum_probs=205.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+..|.++|++++.+ +.|+|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-....|++|+.||.|.+|+
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 67899999999985 8999999999999999999877666 566799999999999876433699999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
..-.++.++++|.+.|+.+++||++ ++-++.+.|+.+++||+-+++.-........ -..+.|+|.|.+++..+
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~--- 187 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG--- 187 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe---
Confidence 8889999999999999999999954 7899999999999999998887776655443 34499999999888876
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE--e
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF--S 638 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s 638 (1096)
...|-+|.+.+......+.... .+.++.|. ++..+++|++|+.|.+||.++..+...+..|.. +|.++.+ .
T Consensus 188 --~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 --RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYTN 260 (362)
T ss_pred --ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEec
Confidence 6789999998887766665542 35545553 568999999999999999999888888888766 8998884 4
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|++.+|+++++||.|++||+...
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCceEEEEeccCceEEEEEcccc
Confidence 67899999999999999999765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-24 Score=205.87 Aligned_cols=267 Identities=17% Similarity=0.265 Sum_probs=215.1
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
.+.|..|.|+|.+.. |++++-||++++||+...+... .-.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEEE
Confidence 568999999999885 5556799999999998765432 234899999999987 567889
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEe
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~ 502 (1096)
|+.||.|+.+|++++.... +..|.++|.|+.+++... .+++||.|++|++|| ........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 9999999999999987654 778999999999998777 899999999999999 5544444444 3347888876
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC--CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC----ee
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG----TI 576 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~----~~ 576 (1096)
.++.|++|+.|..+.+||+++.......... .-.+.++++-|++.-.++++. +|.+.+=.+... ..
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 4578999999999999999987766533222 237899999998887887776 888876555544 33
Q ss_pred eEEEcCcCc--------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 577 KRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 577 ~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
...|+.|.. .+|++++|+|-...|++|+.||.|.+||..+.+.+..+..... .|..++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~--SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYET--SISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCC--ceEEEEeccCCCeEEEEe
Confidence 445666543 2688899999999999999999999999999988888766533 799999999999999997
Q ss_pred C
Q 001343 649 A 649 (1096)
Q Consensus 649 ~ 649 (1096)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=215.74 Aligned_cols=238 Identities=16% Similarity=0.256 Sum_probs=213.5
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 485 (1096)
..+.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+++.. .+++++.|..|+||. ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 368888888888899999999999999999987776 6899999999999999998 899999999999999 6666
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC--CcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
.......|..+|+.+..+| .|.||++++.||+..+.|++++.......... -.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 7777889999999999988 55799999999999999999998887766542 36899999999999999987 9
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCE
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 643 (1096)
+.+++||+.++..+..|.+|.+ +|..+.|+.+|-+++++++|+.|++||++..+...++...... .+.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 9999999999999999999988 9999999999999999999999999999998888888877654 7999999999999
Q ss_pred EEEEECCCcEEEEE
Q 001343 644 LAVTTADNGFKILA 657 (1096)
Q Consensus 644 l~~~~~dg~i~iwd 657 (1096)
|+.++.|=.|++++
T Consensus 447 L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 447 LGIAGSDLQVYICK 460 (506)
T ss_pred EEeecceeEEEEEe
Confidence 99998776666554
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-23 Score=189.49 Aligned_cols=251 Identities=15% Similarity=0.175 Sum_probs=196.9
Q ss_pred CcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecC-
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK- 841 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~- 841 (1096)
|.+.|.|.+|+|+|+.+++++.|.+|++..++...-+. +|..+. +.- |.+.|+.++|-.
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~----------------~g~dle--~nm--hdgtirdl~fld~ 147 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA----------------TGHDLE--FNM--HDGTIRDLAFLDD 147 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccc----------------cCccee--eee--cCCceeeeEEecC
Confidence 88999999999999989999999999998775433222 222222 222 889999999954
Q ss_pred ---CCcEEEEec--CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccc
Q 001343 842 ---NDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWE 916 (1096)
Q Consensus 842 ---dg~~la~~~--dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~ 916 (1096)
.|.+|++++ |-.|++-|..+|+.+..+.+|.+.|.++- +- ++-.+++|+.|.+|++||+.-.. |+..++...
T Consensus 148 ~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw-n~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~ 224 (350)
T KOG0641|consen 148 PESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW-NGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDF 224 (350)
T ss_pred CCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee-cCcEEEccCCCceEEEEeeeccc-eeeeccCcc
Confidence 458899988 45688889999999999999999998873 23 56799999999999999999877 554333311
Q ss_pred cccceeeecCCCCCCCCCceEEEecCCcEEEEE-ecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEec
Q 001343 917 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 995 (1096)
Q Consensus 917 ~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~ 995 (1096)
.-.|-..+.|..+++.|.|++|+++ .|....+||+..++.++.+.+| ...|.++.|||...|+++++.
T Consensus 225 --------~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph---sadir~vrfsp~a~yllt~sy 293 (350)
T KOG0641|consen 225 --------HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH---SADIRCVRFSPGAHYLLTCSY 293 (350)
T ss_pred --------cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC---ccceeEEEeCCCceEEEEecc
Confidence 0111111589999999999999994 7889999999999999999887 999999999999999999999
Q ss_pred CCcEEEEecCCCc----eeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccC
Q 001343 996 DGNIGVFDADTLR----LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 996 dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~ 1060 (1096)
|..|++-|+...- ...... . |...+. .+.|+| ..--|++.+.|.++.+|-+.
T Consensus 294 d~~ikltdlqgdla~el~~~vv~-------e---hkdk~i--~~rwh~-~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 294 DMKIKLTDLQGDLAHELPIMVVA-------E---HKDKAI--QCRWHP-QDFSFISSSADKTATLWALN 349 (350)
T ss_pred cceEEEeecccchhhcCceEEEE-------e---ccCceE--EEEecC-ccceeeeccCcceEEEeccC
Confidence 9999999987432 111111 2 777776 589999 55668888999999999753
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=234.66 Aligned_cols=250 Identities=14% Similarity=0.208 Sum_probs=192.5
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEecC-CCcEEEEEEeCCCcEEEEE-cCCc--------eEEEeeCC
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR--------KLFNFEGH 493 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~~~~--------~~~~~~~~ 493 (1096)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +. +|++|+.|++|++|| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v~---~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI---KLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceEE---EEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 6678899999987654333 68899999999999997 56 899999999999999 5432 34567899
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
...|.+++|+|... .++++++.||+|++||+++++....+. +...|.+++|+++|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999988532 356799999999999999888776665 4568999999999999998886 89999999999
Q ss_pred CeeeEEEcCcCccc----eEEEEEeCCCCEEEEEEcCC----eEEEEeCCC-CeEEEEeecCCCCCCccEEEEeCCCCEE
Q 001343 574 GTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDS----QIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1096)
++.+.++.+|.+.. +....|++++.++++++.|+ .|++||++. ++++.....+.....+......+++.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987632 12233568889999988664 799999985 6667666655543333344445568899
Q ss_pred EEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCC
Q 001343 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 689 (1096)
++|+.|+.|++|++..+. +..+... ....+...++|.|..
T Consensus 279 lsGkGD~tIr~~e~~~~~--~~~l~~~---~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS--IRKVNEY---KSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEECCCeEEEEEccCCc--EEeeccc---ccCCCccceEEcccc
Confidence 999999999999997662 2222221 123456677887754
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=223.16 Aligned_cols=521 Identities=14% Similarity=0.153 Sum_probs=321.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCc-EEEEEEeCCCcEEEEE-cCCceE
Q 001343 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL-LCVVTCGDDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 410 ~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~-~~l~s~s~d~~i~iwd-~~~~~~ 487 (1096)
..-.||+|+++++.+.. ..|+||...+|.++. .+.+|..++..+.+.|.... .++++++.||.|++|| ..+..+
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 34578999999987765 599999999999888 68899999999999987663 3788999999999999 889888
Q ss_pred EEeeCCCCCeEEEEeeec--CCCcEEEEEECCC------------eEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCE
Q 001343 488 FNFEGHEAPVYSICPHHK--ENIQFIFSTAIDG------------KIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~dg------------~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~ 552 (1096)
+++..+. ++..+.+.+. .....+..+..|. +++-+.+.+..... .+......-.++.+++.|.+
T Consensus 96 kt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 8886433 3333333111 0001111111111 11111111110000 00001112467788888888
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeee---EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC--CeEEEEeecCC
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIK---RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTDAEG 627 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 627 (1096)
...+. +..+.+|+..+.... +....++...+.+.+++|+++++++|..||+|.+|.--. +........|-
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 77766 678899988775411 112223333578899999999999999999999997433 22222222333
Q ss_pred CCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccC
Q 001343 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1096)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~ 707 (1096)
|...|++++|+++|.+|.+|+..|.+.+|.+.++. .+-++. ...+|..+.++||+.+.+..
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPR-----Lgs~I~~i~vS~ds~~~sl~------------ 310 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPR-----LGSPILHIVVSPDSDLYSLV------------ 310 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCC--cccccc-----cCCeeEEEEEcCCCCeEEEE------------
Confidence 44489999999999999999999999999999884 222222 34567889998888776332
Q ss_pred CCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcC--C-CCCCcccEEEEEEecCCceEEEeec
Q 001343 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP--E-STDTSSKVVRLLYTNSAVGLLALGS 784 (1096)
Q Consensus 708 ~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~-~~~~~~~i~~l~~s~~~~~l~~~~~ 784 (1096)
..|+.|.+....+.........+..+ . .+...+-.+.++++|.-..++-.+.
T Consensus 311 -------------------------~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 311 -------------------------LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred -------------------------ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 22344433333210000000000000 0 0113445677888885555777888
Q ss_pred CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec---------CC--e
Q 001343 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---------GG--K 853 (1096)
Q Consensus 785 dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~---------dg--~ 853 (1096)
.|.|.+|++.....- ....+...+...+.. .+...+++++.+-+|.+++|+. || .
T Consensus 366 ~g~vQ~ydl~td~~i------~~~~v~~~n~~~~~~--------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 366 PGHVQFYDLYTDSTI------YKLQVCDENYSDGDV--------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred CceEEEEecccccee------eeEEEEeecccCCcc--------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 899999998654321 000111111111110 1445688899999999999974 22 3
Q ss_pred EEEEEccc----ceEEEe-ecCCCCCeeEEEEecCCCc-EEEEeeCCCeEEEEeeccce-----eeeeecccccccccee
Q 001343 854 ISLFNMMT----FKVMTT-FMSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVDE-----LCVWSIDTWEKRKSVT 922 (1096)
Q Consensus 854 v~iwd~~~----~~~~~~-~~~h~~~i~~l~~s~~d~~-~l~s~~~dg~i~iw~~~~~~-----~~~w~~~~~~~~~~~~ 922 (1096)
+++|-... ..+... ...|...+...+|.+.... .+++++.||.++||-+...+ .-.|....
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~-------- 503 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKA-------- 503 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEee--------
Confidence 88997633 233333 3478777776666542333 89999999999999986554 11222111
Q ss_pred eecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCC--cEEEEEecCCcEE
Q 001343 923 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS--QLVFATFCDGNIG 1000 (1096)
Q Consensus 923 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg--~~la~~~~dg~i~ 1000 (1096)
+..+ |.. .++.++||.||..|+++.|+.|.+||..+...+....+.. ..++..+.|.... ...++....+...
T Consensus 504 i~sy--~k~-~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 578 (792)
T KOG1963|consen 504 IGSY--HKT-PITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSR--NWPIAELLFTAQTQNDGALVHATQQRLS 578 (792)
T ss_pred eecc--ccC-cccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccc--ccchHhHhhhcccccccceeeccCceEe
Confidence 1222 343 8999999999999999999999999998843222222221 3444444443321 1233445667899
Q ss_pred EEecCCCceeE
Q 001343 1001 VFDADTLRLRC 1011 (1096)
Q Consensus 1001 vwd~~~~~~~~ 1011 (1096)
+|++-++.+..
T Consensus 579 ~WNll~~~l~w 589 (792)
T KOG1963|consen 579 VWNLLSMSLIW 589 (792)
T ss_pred hHhhhhhheec
Confidence 99988776544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-25 Score=241.08 Aligned_cols=289 Identities=13% Similarity=0.163 Sum_probs=210.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccc--------eeecccccCEEEEEEec---CCCcEEEEEEe
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH--------SQIDAHVGAVNDLAFAY---PNKLLCVVTCG 472 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~--------~~l~~h~~~v~~l~~s~---d~~~~~l~s~s 472 (1096)
.|.+.|+++.||+||+|||+||.|+.|+||.+...+....- ..+.+ .+.+..+.-++ .++....-.+.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~-~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNA-NSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhh-ccccCcccccccccccccccccccc
Confidence 79999999999999999999999999999998763321100 00000 00011111111 01100112222
Q ss_pred CCCcEEEEE----cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC
Q 001343 473 DDKLIKVWE----LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (1096)
Q Consensus 473 ~d~~i~iwd----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 548 (1096)
....+.+-+ ...++++.|.||.+.|..+.|+. + ++|++++.|.+||+|++....++..+ .|+..|+|++|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnP 419 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--N-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNP 419 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheeccccc--C-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecc
Confidence 222222222 35678889999999999999975 3 59999999999999999988888777 5778899999999
Q ss_pred -CCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC
Q 001343 549 -DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 549 -~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1096)
|.+++++|+- |+.++||++...+.+.-...+ ..|++++|.|+|+..++|+.+|.+++|+....+.......+.
T Consensus 420 vDDryFiSGSL----D~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 420 VDDRYFISGSL----DGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cCCCcEeeccc----ccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 7789999998 999999999988887766665 389999999999999999999999999999887766554322
Q ss_pred C------CCCccEEEEeC-CCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCc
Q 001343 628 G------LPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1096)
Q Consensus 628 ~------~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~ 700 (1096)
+ ...|+.+.|.| +...+++.+.|..|+|||..+. ..+..+.+....-. -
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~S---Q-------------------- 549 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSS---Q-------------------- 549 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCc---c--------------------
Confidence 1 12699999998 4456888889999999999665 45555555432211 0
Q ss_pred eeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeee
Q 001343 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
....++.||+++++++.|..|.+|+..
T Consensus 550 -----------------~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 550 -----------------ISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred -----------------eeeeEccCCCEEEEeecCceEEEEeCC
Confidence 112345577777899999999999986
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-21 Score=213.32 Aligned_cols=269 Identities=15% Similarity=0.203 Sum_probs=218.3
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.|+..-+.++|.|+|. ++.+++.||.|++|+.......- ..+.-++..|.+++. ++.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P------------------~ti~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP------------------ETIDISGELVSSIAC--YSNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC------------------chhhccCceeEEEee--cccce
Confidence 4888899999999999 78999999999999987652110 112337777887776 45599
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++|+.+++|.+|.+.+++.-. .+....-++++++|+-+|+ +++.||.|-.|++-+ .++.....+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999998876543 2444667899999999999 899999999999999 8888899999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC--------CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
.++| ++.+|++.+.||.|++||++++.....+..- ...+..++|+|+|..+++.+. ++.|++|+..
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 9987 6689999999999999999987766544321 335778999999777776666 9999999999
Q ss_pred CCeeeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 573 EGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 573 ~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
++.....+...... .+..+.|+|+|.+|++++.||.|.|||.++.+. |.....|.+++|.|+.+.+-.-.
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence 99988888754332 488899999999999999999999999997222 33334788899988876554433
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=203.02 Aligned_cols=252 Identities=20% Similarity=0.299 Sum_probs=207.9
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec--CCCcEEEEEEeCCCcEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~--d~~~~~l~s~s~d~~i~ 478 (1096)
+-..|...|..+...--|+.||||+.|++|+|+.+..+.....+.+|.||.++|+.++|.. .|. +|++|+.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 3567999999999888999999999999999999998776566668999999999999987 677 999999999999
Q ss_pred EEE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe---eeEEeCCCCcEEEEEEcCC---
Q 001343 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD--- 549 (1096)
Q Consensus 479 iwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~--- 549 (1096)
||. ..|+ ....+..|...|++++|.|..-|-.|++++.||.|.+.+++.... ......|.-.|++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999 6653 345567899999999999998899999999999999999887622 2345667778999999986
Q ss_pred C-----------CEEEEEeeccCCCCeEEEEeCCCC--eeeEEEcCcCccceEEEEEeCCC----CEEEEEEcCCeEEEE
Q 001343 550 G-----------SRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQIKFW 612 (1096)
Q Consensus 550 ~-----------~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iw 612 (1096)
| +.|++++. |..|+||+..++ +..+++.+|.+ -+..++|.|.- ..|++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 4 56899887 999999998875 34466889988 88999999964 579999999999999
Q ss_pred eCCCC-eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 613 DMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 613 d~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
..+.. +.......+.-...+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 87632 111111112223378999999999999999999999999754
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=203.07 Aligned_cols=314 Identities=14% Similarity=0.127 Sum_probs=208.2
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcc--ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
..+++|.+.|++++||.||++||+++.|++|++|+++.-... +.+ ...-.-+..+.+.|+||-+. +++++-...++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~-R~nve~dhpT~V~FapDc~s-~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCI-RQNVEYDHPTRVVFAPDCKS-VVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHh-hccccCCCceEEEECCCcce-EEEEEccCCEE
Confidence 358999999999999999999999999999999999763211 111 11122235788999999886 66666667788
Q ss_pred EEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
++|....+.-..+. ...+- ||--. ....|.-.+..+-...++++|++++
T Consensus 158 ~vyk~~K~~dG~~~-----~~~v~---------------------~D~~~-----f~~kh~v~~i~iGiA~~~k~imsas 206 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGS-----HHFVH---------------------IDNLE-----FERKHQVDIINIGIAGNAKYIMSAS 206 (420)
T ss_pred EEEEeeecccCCCC-----ccccc---------------------ccccc-----cchhcccceEEEeecCCceEEEEec
Confidence 88862211111111 11111 11000 0011222444566667788888888
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC---CC---eEEEEeecCCCCCC
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD---NV---NILTSTDAEGGLPN 631 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~---~~~~~~~~~~~~~~ 631 (1096)
. +..|.+|+++ |+.+..+..... .....+.+|+|+++++++..-.|++|.+- .| +....++..+|...
T Consensus 207 ~----dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa 280 (420)
T KOG2096|consen 207 L----DTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA 280 (420)
T ss_pred C----CCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh
Confidence 7 8889999988 888888776655 55568899999999999998999999863 22 22344445555669
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~ 711 (1096)
|..++|+++...+++.+.||++++||.+-..+. ..+
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~------~qD-------------------------------------- 316 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA------GQD-------------------------------------- 316 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccceEec------CCC--------------------------------------
Confidence 999999999999999999999999997533110 000
Q ss_pred CCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEe
Q 001343 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1096)
Q Consensus 712 ~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw 791 (1096)
. ..++.... .+.. ..+....++.+|.|+ +++.+....+++|
T Consensus 317 --------------p---------k~Lk~g~~------------pl~a---ag~~p~RL~lsP~g~-~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 317 --------------P---------KILKEGSA------------PLHA---AGSEPVRLELSPSGD-SLAVSFGSDLKVF 357 (420)
T ss_pred --------------c---------hHhhcCCc------------chhh---cCCCceEEEeCCCCc-EEEeecCCceEEE
Confidence 0 00000000 0000 223344788999998 4455555577777
Q ss_pred eccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEc
Q 001343 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNM 859 (1096)
Q Consensus 792 ~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~ 859 (1096)
.-.. |+.... +. ..|...|.+++|+++|+++|+++|..+++..-
T Consensus 358 ~se~----------------------g~~~~~-~e-~~h~~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 358 ASED----------------------GKDYPE-LE-DIHSTTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred Eccc----------------------Cccchh-HH-HhhcCceeeEEecCCCcEEeeecceeeeeecC
Confidence 6432 332221 11 13889999999999999999999999998863
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=205.24 Aligned_cols=290 Identities=16% Similarity=0.229 Sum_probs=239.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.||+..|+.++-......+.+++.|.+.+||.+++|.|+. .+.||.+.|+++.|++.+. ++++++.|++..||.
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~---~Y~GH~GSVNsikfh~s~~--L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA---TYTGHTGSVNSIKFHNSGL--LLLTASGDETAHIWK 218 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecccccee---eecccccceeeEEeccccc--eEEEccCCcchHHHH
Confidence 88999999999998888899999999999999999999988 5889999999999999998 999999999999994
Q ss_pred --cC-------------C--------------------------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeE
Q 001343 482 --LS-------------G--------------------------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520 (1096)
Q Consensus 482 --~~-------------~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (1096)
.+ + .++..+.+|.+.|.+..|.. .|+.+++++.|.+.
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~--gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA--GGQQMVTASWDRTA 296 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc--Ccceeeeeeccccc
Confidence 10 0 13566789999999999865 56789999999999
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC-eeeEEEcCcCccceEEEEEeCCCCE
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNH 599 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 599 (1096)
.+||+++++.+..+.+|....+.++-+|..+++++.+. |.+.++||++.. ..+..|+||.+ .++++.|..+ ..
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr----DtTFRLWDFReaI~sV~VFQGHtd-tVTS~vF~~d-d~ 370 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR----DTTFRLWDFREAIQSVAVFQGHTD-TVTSVVFNTD-DR 370 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEecc----CceeEeccchhhcceeeeeccccc-ceeEEEEecC-Cc
Confidence 99999999999999999999999999999999999887 999999999843 45678999998 8898999865 57
Q ss_pred EEEEEcCCeEEEEeCCCC-eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccC
Q 001343 600 FLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 678 (1096)
+++|++|.+|++||+++. .++.++.... +++.++.+..+..|+.--++..|++||+... + +..+.......++.
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-R-laRlPrtsRqgHrR 445 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-R-LARLPRTSRQGHRR 445 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceEEeccCCceEEEEecCCC-c-cccCCcccccccce
Confidence 899999999999999874 5677776544 7899999999999999999999999999544 3 33333223333344
Q ss_pred cceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeee
Q 001343 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 679 ~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
-|.+++|..+-. ---|++++.|..+.-|++.
T Consensus 446 MV~c~AW~eehp-----------------------------------~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 446 MVTCCAWLEEHP-----------------------------------ACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred eeeeeeccccCc-----------------------------------ccccccccccceeeeeEec
Confidence 466666653211 1235688888999889876
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=221.59 Aligned_cols=485 Identities=14% Similarity=0.167 Sum_probs=314.0
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCC---CEEEEE
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG---NYVGVA 424 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~---~~l~s~ 424 (1096)
..-.||+|+++++.+ .+..|.||...+|+++.. +.+|..++..+.+.|.. .++.++
T Consensus 20 ~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~~-------------------l~~~~a~l~s~~~~~~~~~~~~~~~~ 78 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC--TGNFVKVYSTATGECITS-------------------LEDHTAPLTSVIVLPSSENANYLIVC 78 (792)
T ss_pred cccccccCCcEEEEe--eCCEEEEEecchHhhhhh-------------------cccccCccceeeecCCCccceEEEEE
Confidence 345699999964443 578999999999998853 88999999999998854 478899
Q ss_pred ECCCeEEEEEccCCCccccceeeccc--c-------cC------------------------------------------
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAH--V-------GA------------------------------------------ 453 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h--~-------~~------------------------------------------ 453 (1096)
+.||.|++||...+..++.+. ...+ . ..
T Consensus 79 sl~G~I~vwd~~~~~Llkt~~-~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~ 157 (792)
T KOG1963|consen 79 SLDGTIRVWDWSDGELLKTFD-NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFL 157 (792)
T ss_pred ecCccEEEecCCCcEEEEEEe-cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhh
Confidence 999999999998877655321 0000 0 00
Q ss_pred -----EEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce-EEE---eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEE
Q 001343 454 -----VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK-LFN---FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1096)
Q Consensus 454 -----v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~-~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 523 (1096)
-.++.+++.|. +...-.+..+.+|+ ..+.. ... -..|...+++.+++| ++.++++|..||.|.+|
T Consensus 158 ~~~~~~~~I~~~~~ge---~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 158 KEHQEPKSIVDNNSGE---FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVW 232 (792)
T ss_pred hhhcCCccEEEcCCce---EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEE
Confidence 01122222222 22223345566676 33321 111 134677789999987 56899999999999999
Q ss_pred EcCC----CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCE
Q 001343 524 LYDT----MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (1096)
Q Consensus 524 d~~~----~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 599 (1096)
.--. ......+.-|...|.+++|+++|.+|++||. ++.+.+|.+.+++ ++|-..-+.++..+.++||+..
T Consensus 233 ~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~----E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 233 RDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR----EGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDL 306 (792)
T ss_pred eccccccccccceEEEecccccceeEEecCCceEeeccc----ceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCe
Confidence 5322 1223356667779999999999999999998 9999999999998 4444333448999999999999
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEeecCCC---------CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccccccc-
Q 001343 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGG---------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE- 669 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 669 (1096)
.....+|+.|.+....+.....++.+... .+-.+.++++|..+.++..+..|.|.+||+.+.... ..+.
T Consensus 307 ~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v 385 (792)
T KOG1963|consen 307 YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQV 385 (792)
T ss_pred EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee-eeEEE
Confidence 99999999999999877655544443221 224567889998888899999999999999887433 2221
Q ss_pred ---CC-Ccc-cccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeee
Q 001343 670 ---NP-PFE-ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 670 ---~~-~~~-~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
.+ ... .....+++++.+..|.++++..... ...-..+..-.+++|...
T Consensus 386 ~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~---------------------------d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 386 CDENYSDGDVNIQVGITAVARSRFGSWMATLEARI---------------------------DKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred EeecccCCcceeEEeeeeehhhccceEEEEeeeee---------------------------hhhhccCceEEEEEEEEc
Confidence 11 111 2233455666666677765443210 000011112457889887
Q ss_pred eeecCCceEE-EEcCCCCCCcccEEEEEEec-CCc-eEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccc
Q 001343 745 EIVDSGQCRL-VTMPESTDTSSKVVRLLYTN-SAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLM 821 (1096)
Q Consensus 745 ~~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~-~~~-~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~ 821 (1096)
....+-.... +..| |...+...++.+ ... .+++++.||.+++|-+......-. .-..|. |.
T Consensus 439 ~~~kt~~L~T~I~~P----H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k-------~~s~W~-----c~ 502 (792)
T KOG1963|consen 439 PNSKTFILNTKINNP----HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK-------KSSNWT-----CK 502 (792)
T ss_pred CCcceeEEEEEEecC----CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc-------CccceE-----Ee
Confidence 5333222222 2222 666666666554 222 688999999999999854321000 001121 22
Q ss_pred cccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccc-eEEEeecCCCCCeeEEEEecC-CCcEEEEeeCCCeEEE
Q 001343 822 ANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQ-DNNIIAIGTEDSTIHI 899 (1096)
Q Consensus 822 ~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~-d~~~l~s~~~dg~i~i 899 (1096)
.+ |..|..++++++||.||.+||.+.+++|.+||..+. .+..+...-..++..+.|..+ -....++....+.+.+
T Consensus 503 ~i---~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 579 (792)
T KOG1963|consen 503 AI---GSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSV 579 (792)
T ss_pred ee---eccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEeh
Confidence 11 112788999999999999999999999999999873 333333222333433333221 1123445556778999
Q ss_pred Eeeccceeeeeecc
Q 001343 900 YNVRVDELCVWSID 913 (1096)
Q Consensus 900 w~~~~~~~~~w~~~ 913 (1096)
|++.+.. ..|...
T Consensus 580 WNll~~~-l~w~~s 592 (792)
T KOG1963|consen 580 WNLLSMS-LIWNLS 592 (792)
T ss_pred Hhhhhhh-eecchh
Confidence 9999887 666443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=201.02 Aligned_cols=293 Identities=13% Similarity=0.160 Sum_probs=223.8
Q ss_pred CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 333 ~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
.|.++..++.|.. -.|+.||+.|. +||+|..||.|.|||+.|...- .++.+|..+|.++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeEE
Confidence 4566677788776 89999999999 7999999999999999886633 3588999999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEe-e
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-E 491 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~ 491 (1096)
+||+||+.|++++.|..|++||+..|.+++.+. ...+|+.+.|+|-..+ ..+.+-.+..-.+-+... ..+++ .
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir----f~spv~~~q~hp~k~n-~~va~~~~~sp~vi~~s~-~~h~~Lp 145 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR----FDSPVWGAQWHPRKRN-KCVATIMEESPVVIDFSD-PKHSVLP 145 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEEE----ccCccceeeeccccCC-eEEEEEecCCcEEEEecC-Cceeecc
Confidence 999999999999999999999999999877542 5789999999998776 334343344444445221 22222 1
Q ss_pred C-CCCCe----EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 492 G-HEAPV----YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 492 ~-~~~~v----~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
. ..+.. .+..| +..|+++++|...|.+.++|..+.+++..++... ..|..+.++..|++++..+. |..
T Consensus 146 ~d~d~dln~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVF--DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred CCCccccccccccccc--cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 1 11111 11234 4467899999999999999999999988877766 68999999999999999887 999
Q ss_pred EEEEeCCCC-------ee--eEEEcC-cCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 566 LVEWNESEG-------TI--KRTYAG-FRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 566 i~iwd~~~~-------~~--~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
|+.|+++.- ++ .+.++. -+...-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+. ....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~D 298 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLD 298 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heee
Confidence 999997621 11 111111 0112345689999999998877 4567999999999999999877643 6778
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 635 LRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
+.|+|-...+++. ..|.+++|....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeec
Confidence 9999988888877 678999998644
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=198.92 Aligned_cols=304 Identities=13% Similarity=0.185 Sum_probs=218.0
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee----EEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
..+++|...|++++|+. ||++|++++.|++|++|+++...... ....+-+..+.+.|+||-+-+++... ..
T Consensus 80 ~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~---~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK---RG 154 (420)
T ss_pred hhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc---cC
Confidence 45789999999999965 88999999999999999988643321 12223335788999999987776554 26
Q ss_pred CeEEEEeCCC---CeeeEE--------EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCc
Q 001343 564 SFLVEWNESE---GTIKRT--------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1096)
Q Consensus 564 ~~i~iwd~~~---~~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1096)
..+++|-+.. |..... |...+.-.+-.+-....+.+|++++.|..|.+|+++ |+.+..+..... .-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cc
Confidence 7888887642 221111 111111123334555677899999999999999998 888888876544 55
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCC
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~ 712 (1096)
+..+.+|+|+++++++..-.|++|.+ .|..+|.+-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~-------------------------~f~kdG~fq-------------------- 266 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEP-------------------------IFTKDGTFQ-------------------- 266 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEE-------------------------EeccCcchh--------------------
Confidence 78899999999999999999999975 222222211
Q ss_pred CcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEee
Q 001343 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1096)
Q Consensus 713 ~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~ 792 (1096)
...++ +.+.| |...|..++|+++..++++.+.||+.++||
T Consensus 267 -----------------------ev~rv--------------f~LkG---H~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 267 -----------------------EVKRV--------------FSLKG---HQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred -----------------------hhhhh--------------heecc---chhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 11222 34556 999999999999999999999999999999
Q ss_pred ccCCc-cCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeec-C
Q 001343 793 WHRNE-QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-S 870 (1096)
Q Consensus 793 ~~~~~-~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~-~ 870 (1096)
.+..- ...+.+. +.+|. ..+. +....-..+++||+|+.||.+....+++|..++|+....++ .
T Consensus 307 tdVrY~~~qDpk~----------Lk~g~---~pl~--aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 307 TDVRYEAGQDPKI----------LKEGS---APLH--AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred ccceEecCCCchH----------hhcCC---cchh--hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh
Confidence 86421 1111111 11221 0111 12233347999999999999998889999999998877765 6
Q ss_pred CCCCeeEEEEecCCCcEEEEeeCCCeEEEEe
Q 001343 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1096)
Q Consensus 871 h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~ 901 (1096)
|...|.+++|++ +|++++++++ ..+++..
T Consensus 372 h~~~Is~is~~~-~g~~~atcGd-r~vrv~~ 400 (420)
T KOG2096|consen 372 HSTTISSISYSS-DGKYIATCGD-RYVRVIR 400 (420)
T ss_pred hcCceeeEEecC-CCcEEeeecc-eeeeeec
Confidence 889999999999 9999998875 4566654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=217.35 Aligned_cols=292 Identities=14% Similarity=0.215 Sum_probs=235.3
Q ss_pred ceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 336 ~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
+.+.+|.|..-|.++.+|...+ .+.||+ .|.|+|||+....... ++. +.. .....+-|.++.+.
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k~--Pvs-----------qLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNKS--PVS-----------QLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCCC--ccc-----------ccc-ccCcccceeeeEec
Confidence 4466788999999999999998 588884 6899999997543210 110 111 22246689999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~ 494 (1096)
|||+.|++|+.-.++.|||+.....- ...++..-.-..++++.+||.+ +.++|..||.|.||| .+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 99999999999999999999875432 1113444445678899999999 899999999999999 8888899999999
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
..+.|+.+++ +|..|.+|+-|.+||.||++.+..+..... ...|.++.++|++.++++|-. ++.+.+.... +
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 9999999965 778999999999999999998877665443 347999999999999999986 7777776644 3
Q ss_pred eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
.....+..|.. .|.++.|.+.|+++++.+.|+.+..|...-|..+...... ..|.++.++.|.++|++|+.|..-.
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 33344555555 8889999999999999999999999999888777665433 3799999999999999999998888
Q ss_pred EEEc
Q 001343 655 ILAN 658 (1096)
Q Consensus 655 iwd~ 658 (1096)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=211.27 Aligned_cols=223 Identities=15% Similarity=0.192 Sum_probs=194.0
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c--
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-- 482 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-- 482 (1096)
.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|. .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4589999999999999999899999999999999887 5789999999999999999 999999999999997 2
Q ss_pred -------CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 483 -------SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 483 -------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
+-++++.|..|.-+|+++...+.+-..++++++.|.++++||+..+..+..+..+ ..+.+++++|.++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 2357888999999999999887766679999999999999999988777766544 46999999999999999
Q ss_pred EeeccCCCCeEEEEeCCC----------------CeeeEEEcCcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 556 CGTSKDGDSFLVEWNESE----------------GTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
|+. +|.|.+.++.. +..+..+.||.+ ..|+|++++-||..|++|+.||.++|||+.+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 987 99998877643 234556777776 589999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCccEEEEeCC
Q 001343 619 ILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
+++++....+ +|+.+.+.|-
T Consensus 311 ~iRtl~~~kg--pVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTSKG--PVTNLQINPL 330 (476)
T ss_pred HHHHHhhhcc--ccceeEeecc
Confidence 9988875433 8899988764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=222.36 Aligned_cols=264 Identities=16% Similarity=0.268 Sum_probs=215.5
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEE-EEEecCCCcEEEEEEeCCCcEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-LAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~-l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.+.+|+..|..+++.+. ..+++++.||++++|+-..++.+.. ..+.+|.+.|.. +++.+..+. .+++|+.|++|.+
T Consensus 9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKG-RLVVGGMDTTIIV 85 (745)
T ss_pred EeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccc-eecccCcceeeccceeccccCc-ceEeecccceEEE
Confidence 48899999999887654 4888999999999999876554442 257788888887 888863333 6999999999999
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
|. ....++..+++|+..|.+++... ++ .+++||.|.++++| ..++....+.+|...|.+++.-|++ .+++|+.
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~~~--~~-~~iSgSWD~TakvW--~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa 159 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSIGE--DG-TLISGSWDSTAKVW--RIGELVYSLQGHTASVWAVASLPEN-TYVTGSA 159 (745)
T ss_pred EecCCCCchhhhhccccceeeeecCC--cC-ceEecccccceEEe--cchhhhcccCCcchheeeeeecCCC-cEEeccC
Confidence 99 88899999999999999998633 33 49999999999999 4556667789999999999999988 6777776
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
|..|++|.- ++.+++|.+|.+ .|..+++-++ ..|++++.||.|+.|++ +|+.+....+|.. .|++++..
T Consensus 160 ----DKtIklWk~--~~~l~tf~gHtD-~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn--~vYsis~~ 228 (745)
T KOG0301|consen 160 ----DKTIKLWKG--GTLLKTFSGHTD-CVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN--FVYSISMA 228 (745)
T ss_pred ----cceeeeccC--Cchhhhhccchh-heeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccce--EEEEEEec
Confidence 999999975 889999999998 8999998876 46899999999999999 7788877777655 89999988
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
.++..+++++.|++++||+.. .+.+.+.-+.. .++++.+-++|..+
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPtt-----siWsa~~L~NgDIv 274 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTT-----SIWSAKVLLNGDIV 274 (745)
T ss_pred CCCCeEEEecCCceEEEeecC---ceEEEEecCcc-----ceEEEEEeeCCCEE
Confidence 888999999999999999976 34444443322 35566666666543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=196.20 Aligned_cols=252 Identities=18% Similarity=0.260 Sum_probs=203.0
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CCC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~ 419 (1096)
.|.+-|..+...--|++ |||++.|++|+|+.+.++.... ....|.||.++|..++|.. -|.
T Consensus 9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 48889999999999994 9999999999999998765311 1124899999999999977 799
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCc--eEEEeeCCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR--KLFNFEGHEA 495 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~--~~~~~~~~~~ 495 (1096)
+||+++.||.|.||.-++| ...+..+...|...|++++|.|.+-.+.|++++.||.|.|.+ .+|. ..+....|.-
T Consensus 72 iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 9999999999999999888 444444677899999999999998888999999999999998 3322 2244578999
Q ss_pred CeEEEEeeecCC-C-----------cEEEEEECCCeEEEEEcCCCCee--eEEeCCCCcEEEEEEcCCC----CEEEEEe
Q 001343 496 PVYSICPHHKEN-I-----------QFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSADG----SRLFSCG 557 (1096)
Q Consensus 496 ~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~----~~l~~~~ 557 (1096)
.|++++|.|..- | ..|++|+.|..|+||+.+...-. ..+..|...|..++|.|.- .+|++++
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999999987521 1 56999999999999998875332 2478899999999999965 4688888
Q ss_pred eccCCCCeEEEEeCCCC--eeeEE-EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 558 TSKDGDSFLVEWNESEG--TIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~--~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
. |+.+.||..... .-..+ +.... ..+..+.|+..|+.|++++.|+.|.+|.-..
T Consensus 231 q----Dg~viIwt~~~e~e~wk~tll~~f~-~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 231 Q----DGTVIIWTKDEEYEPWKKTLLEEFP-DVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred C----CCcEEEEEecCccCcccccccccCC-cceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 6 999999976522 11122 22222 3788999999999999999999999998654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=193.70 Aligned_cols=271 Identities=16% Similarity=0.112 Sum_probs=211.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 484 (1096)
....|..|.|+|.+..|++++.||++++||+....... .-.|..++.+++|.++. .+++|+.||.|+.+|.+.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~---~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADES---TIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCc---eEEEeccCceEEEEEecC
Confidence 46789999999999999999999999999998864333 23599999999999865 489999999999999666
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCC
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~ 564 (1096)
.....+..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++..+ |+.|++++. +.
T Consensus 85 ~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~--g~~LvVg~~----~r 155 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVS--GNRLVVGTS----DR 155 (323)
T ss_pred CcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEecc--CCEEEEeec----Cc
Confidence 6666777899999999998643 579999999999999999755444444333 67777764 567888776 89
Q ss_pred eEEEEeCCCCeeeEEEc-CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC----eEEEEeecCCC-------CCCc
Q 001343 565 FLVEWNESEGTIKRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGG-------LPNL 632 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v 632 (1096)
.+.+||+++........ ..-+-.+.++++-|++.-+++++-||.|.+=.++.. +....+..|.. .-+|
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 99999999865443222 112236888999999999999999999988766654 23333333321 1368
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
++++|+|--..+|+|+.||.|.+||+.+. +.+..+... ...|.+++|+.+|..||.+.+
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~~-----~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAKY-----ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcch-hhhhhccCC-----CCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999999999877 555555544 334788999999999977655
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=210.75 Aligned_cols=263 Identities=14% Similarity=0.240 Sum_probs=211.9
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 337 ~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
....+.|.++|+.+.+-|....++|+++..+.|.|||+.+..-.... .+.-.+.-.+.||+..=..++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccccc
Confidence 34556799999999999999989999999999999998764433210 000011224889998888899999
Q ss_pred C-CCEEEEEECCCeEEEEEccCCCc----cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c--CCceEE
Q 001343 417 D-GNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLF 488 (1096)
Q Consensus 417 d-~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~--~~~~~~ 488 (1096)
. .-+|++|+.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.||| . +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 5 45889999999999999986543 4444568899999999999998776 899999999999999 6 566777
Q ss_pred EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCCEE-EEEeeccCCCCeE
Q 001343 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFL 566 (1096)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l-~~~~~~~~~~~~i 566 (1096)
...+|.++|+|++|+|.. +..|++|+.|++|.+||+++... +..+..|...|..+.|+|....+ ++++. |+.+
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl 341 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRL 341 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcE
Confidence 889999999999999875 57999999999999999997554 56888999999999999987654 45554 9999
Q ss_pred EEEeCCCC--------------eeeEEEcCcCccceEEEEEeCCCCE-EEEEEcCCeEEEEeCC
Q 001343 567 VEWNESEG--------------TIKRTYAGFRKKSNGVVQFDTTQNH-FLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 567 ~iwd~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~ 615 (1096)
.+||+..- +++..-.||.. .|..+.|+|+..+ |++.++|+.+.||.+.
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99998742 22344557776 7888999998876 4567899999999986
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=194.92 Aligned_cols=241 Identities=16% Similarity=0.278 Sum_probs=193.6
Q ss_pred Eeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 339 VSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 339 ~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
..+. |.++|+|+|.+ |+ ++|+|+.|.+|+|||+.+...+.. +-.|.+.|+++.|.++
T Consensus 37 F~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~-------------------ll~HagsitaL~F~~~ 94 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGI-------------------LLSHAGSITALKFYPP 94 (362)
T ss_pred ccccccccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhcc-------------------eeccccceEEEEecCC
Confidence 3444 99999999996 55 799999999999999988776643 6779999999999998
Q ss_pred CC--EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC
Q 001343 418 GN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 418 ~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~ 494 (1096)
-. .|++|+.||.|.+|+...-.++. .+++|.+.|+.++.+|.++ +.++.+.|+.+++|| .+|+.-..+.-.
T Consensus 95 ~S~shLlS~sdDG~i~iw~~~~W~~~~---slK~H~~~Vt~lsiHPS~K--LALsVg~D~~lr~WNLV~Gr~a~v~~L~- 168 (362)
T KOG0294|consen 95 LSKSHLLSGSDDGHIIIWRVGSWELLK---SLKAHKGQVTDLSIHPSGK--LALSVGGDQVLRTWNLVRGRVAFVLNLK- 168 (362)
T ss_pred cchhheeeecCCCcEEEEEcCCeEEee---eecccccccceeEecCCCc--eEEEEcCCceeeeehhhcCccceeeccC-
Confidence 65 99999999999999998876666 6889999999999999999 888999999999999 888876665422
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
..-+.+.|.| .|.+++.++. ..|-+|.+++.......... ..+.++.|. ++..+++|+. ++.|.+||..+.
T Consensus 169 ~~at~v~w~~--~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d----~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 169 NKATLVSWSP--QGDHFVVSGR-NKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGD----NEWISLKDTDSD 239 (362)
T ss_pred CcceeeEEcC--CCCEEEEEec-cEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecC----CceEEEeccCCC
Confidence 2234488876 4567766665 45778987765544333322 456666664 5667777776 899999999999
Q ss_pred eeeEEEcCcCccceEEEEE--eCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 575 TIKRTYAGFRKKSNGVVQF--DTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
.+...+.+|.. .|..+.+ .|++.+|++++.||.|++||++..
T Consensus 240 ~~~~~~~AH~~-RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 240 TPLTEFLAHEN-RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ccceeeecchh-heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999988 6766653 456789999999999999999865
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=190.62 Aligned_cols=300 Identities=15% Similarity=0.227 Sum_probs=227.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 420 (1096)
.|.+.|+++.+.+...+|+.+|+.||.|.|||+++........+ +-+ ..|... ..--.+|+-.|..+.|-| |...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~v~--~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCIVA--KQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeeecc--ccCCccceeeeeeeEEeeecCce
Confidence 48899999999997655899999999999999987542211000 000 011111 112467899999999999 6678
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCC-cEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~-~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~ 498 (1096)
+.+++.|.+++|||.++-+.... + .-.+.|+.-+++|-.. .-++++|..|-.|++-| .+|..-+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~---F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVD---F-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeEE---e-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 88999999999999998665442 2 2456788888888543 22678888889999999 99999999999999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEe--------------CCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYD--------------APGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~--------------~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
++.|+|..+ -.|++|+.||.|++||++.. .+...+. .|.+.+..++|+.++.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999999754 67899999999999999865 3333332 34557999999999999999998 9
Q ss_pred CeEEEEeCCCCeeeEEEcC---cCcc---ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE
Q 001343 564 SFLVEWNESEGTIKRTYAG---FRKK---SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~---~~~~---~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1096)
..+++|+..+|+....-.+ |+.. .+. +. +.+...++.--.++.+.++++-.+..+..+..|.. .+.|.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k--~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK--RINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccc--eeeEEee
Confidence 9999999988753221111 1110 111 22 33334455555678999999999999999998854 8999999
Q ss_pred eCCCCEEEEEECCCcEEEEEc
Q 001343 638 SKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 638 s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
-|+-+...++..|+.|..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999976
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=203.51 Aligned_cols=287 Identities=11% Similarity=0.212 Sum_probs=234.4
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC-EEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVG 422 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~ 422 (1096)
.+.|+||.|+|... +|.+|+.|++++||.+.......-+ .+.--..+|.+..|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lq-----------------S~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQ-----------------SIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhe-----------------eeeeccCccceeeecCCCceEEE
Confidence 46899999999998 8999999999999998743322110 1222466899999999999 889
Q ss_pred EEECCCeEEEEEccCCCccccceeecccc-cCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
+++.....+.||+.+++..+.. .+.++. ..+.....+++++ +|+..+..|.|.+-. .+++.+.+++ ..+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~-~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLK-PPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccccc-CCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 9999999999999998755422 344554 4667888999999 899999999999999 8899888887 56789999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC-cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC------
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE------ 573 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~------ 573 (1096)
+|+ .++..|++++.+|.|.+||++...+...+...+. .-++++.++++.++++|+. .|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 996 4778999999999999999999988888876665 5578999999999999997 99999999653
Q ss_pred CeeeEEEcCcCccceEEEEEeCCCCEEEEEE--cCCeEEEEeCCCCeEEEEeecC-CCCCCccEEEEeCCCCEEEEEECC
Q 001343 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.+++..+..-.. .|+.+.|+++...|+.++ .+..+++-++.+......+... ...+.|+|++|+|.+.++|.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 456666665555 788999999999988877 5678999999877666555433 234578999999999999999999
Q ss_pred CcEEEEEcC
Q 001343 651 NGFKILANA 659 (1096)
Q Consensus 651 g~i~iwd~~ 659 (1096)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999873
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=212.61 Aligned_cols=273 Identities=11% Similarity=0.126 Sum_probs=213.9
Q ss_pred CCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCC
Q 001343 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG 802 (1096)
Q Consensus 723 s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g 802 (1096)
+...+.+.||+. |-|+|||+...........+.... ....|+++...|||+.|++++.-.++.|||+.....
T Consensus 428 S~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~---rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp---- 499 (705)
T KOG0639|consen 428 SNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLN---RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP---- 499 (705)
T ss_pred cCCcceeEecCC-CeEEEeeccCCCCCCccccccccC---cccceeeeEecCCCceEEeccccceeeeeeccCCCc----
Confidence 444455667776 899999998543333333333333 567899999999999999999999999999854221
Q ss_pred ceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEe
Q 001343 803 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH 881 (1096)
Q Consensus 803 ~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s 881 (1096)
.++..++. ..-...+++.|||.++.+++. ||.|.|||+.+..+++.|++|.+.+.||.++
T Consensus 500 -----------------rikaelts--sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 500 -----------------RIKAELTS--SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred -----------------chhhhcCC--cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 11112322 234567799999998877666 8999999999999999999999999999999
Q ss_pred cCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCC-CCCceEEEecCCcEEEEE-ecceEEEEEc
Q 001343 882 PQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTP-TGDTRVQFNADQVRMLVV-HETQLAIYDA 959 (1096)
Q Consensus 882 ~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~v~~v~fs~dg~~l~~~-~d~~i~iwd~ 959 (1096)
+ ||..|-+|+-|++|+-||+..+. .+..|.+ +.|.++-.+|.+.+|+++ ..+.+.|-..
T Consensus 561 ~-dGtklWTGGlDntvRcWDlregr------------------qlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 561 K-DGTKLWTGGLDNTVRCWDLREGR------------------QLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred C-CCceeecCCCccceeehhhhhhh------------------hhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence 9 99999999999999999999887 3444444 589999999999999995 6778888877
Q ss_pred ccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecC
Q 001343 960 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1039 (1096)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~ 1039 (1096)
...+. .++.- |.+-|.++.|++.|+++++.+.|..+..|...-|.-+.... .++.|.++ ..|.
T Consensus 622 skp~k-yqlhl---heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-----------E~SsVlsC--DIS~ 684 (705)
T KOG0639|consen 622 SKPEK-YQLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-----------ESSSVLSC--DISF 684 (705)
T ss_pred CCccc-eeecc---cccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-----------ccCcceee--eecc
Confidence 65542 23322 38999999999999999999999999999998887554433 35578864 4444
Q ss_pred CCCceEEEEeeCCcEEEEcc
Q 001343 1040 LEPNQFAIGLTDGSVKVMEP 1059 (1096)
Q Consensus 1040 ~d~~~l~s~~~dg~i~vW~v 1059 (1096)
|.++++||+.|....||+|
T Consensus 685 -ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 685 -DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -CceEEEecCCCcceEEEEE
Confidence 7899999999999888876
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=211.87 Aligned_cols=274 Identities=12% Similarity=0.157 Sum_probs=206.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.|..++|-|||..+++. .+..+.|||...|..+.+ +++|++.|.|++|+.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lA--Ag~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA--AGSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEe--cCCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 79999999999975543 467999999999988754 899999999999999999999999
Q ss_pred CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeec
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 505 (1096)
.|..|.+|+-+-...++ ..|.+.|.|+.|+|-.. .|+||+-. ..-+|....+.+...+ ...++.+++| .
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K~k-ss~R~~~CsW--t 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSKHK-SSSRIICCSW--T 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHhhh-hheeEEEeee--c
Confidence 99999999866433332 25999999999999988 78888743 4668884444333322 3445667777 5
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCCeeeEEe---CCCCcEEEEEEcCCCC-----EEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADGS-----RLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~~~-----~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
.||++++.|-.+|+|.+-+-. ++....+. +.+.+|.+++|+|... .+++... ..++..+.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 588999999999999988643 33333333 3556999999999643 3444433 4455555543 3333
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
..-+.-.- ...|+.+.++|.+++.|+.|+.+.+|.. .|-.+.++....+ .|+.++..|+++.++.|+.||+|-.|+
T Consensus 216 gk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehhh
Confidence 32222222 4556889999999999999999999985 5666776665555 899999999999999999999999998
Q ss_pred cCCC
Q 001343 658 NAIG 661 (1096)
Q Consensus 658 ~~~~ 661 (1096)
+...
T Consensus 292 l~fS 295 (1081)
T KOG1538|consen 292 LIFS 295 (1081)
T ss_pred hHHh
Confidence 7543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=202.90 Aligned_cols=294 Identities=15% Similarity=0.222 Sum_probs=225.1
Q ss_pred CCCceEEEEEcCCCC-cEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001343 343 QGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~-~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 420 (1096)
|...|+|++|+|... .++|+|...|.|-+||+.+.+.... .+ ..+..|..+|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d-~v--------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD-GV--------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC-ce--------------EEeccCCccccceEecCCChhh
Confidence 788999999999976 7899999999999999964443322 11 13788999999999999 5568
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~ 498 (1096)
+++.+.||+|++-|++++.. ..+..+......+..+.|+.+.. .++.+..=|.+.+|| ..+.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999987642 22223444556778899998888 677788778999999 45556778888999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCee----eEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC--
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-- 572 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~-- 572 (1096)
+++++|... .+|++++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. |..|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999999754 79999999999999999864433 344567779999999999888888876 9999999983
Q ss_pred --CCeeeEEEcCcCcc----ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC-EEE
Q 001343 573 --EGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-LLA 645 (1096)
Q Consensus 573 --~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 645 (1096)
.-.+..++...... ...-..|.|+.+++++|..-..|-|+|-..++.+..+.......-..-..|+|-+. +++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~a 481 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAA 481 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceec
Confidence 33344444322211 12236799999999999998999999999999887765554332233458999877 444
Q ss_pred EEECCCcEEEEEcC
Q 001343 646 VTTADNGFKILANA 659 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~ 659 (1096)
.++..|.|++|.-.
T Consensus 482 G~~s~Gki~vft~k 495 (498)
T KOG4328|consen 482 GGNSSGKIYVFTNK 495 (498)
T ss_pred cCCccceEEEEecC
Confidence 45567888888643
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-22 Score=191.36 Aligned_cols=268 Identities=13% Similarity=0.213 Sum_probs=202.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE
Q 001343 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 487 (1096)
-.|+.|++.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+|| ..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976544 5889999999999999999 899999999999999 999999
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC----cEEEEEEcCCCCEEEEEeeccCCC
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH----WCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
+.++ ..++|+.+.|+|......+++- .+..-.+-++........-....+ .-.+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 8887 6889999999998765544443 333344445544222221111111 2233468899999999987 9
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC-------eE--EEEeecCCCCCCccE
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-------NI--LTSTDAEGGLPNLPR 634 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~~~~~~~v~~ 634 (1096)
|.+.++|..+.+++..++-.....|..+.++..|++|+.-+.|..|+.|++..- ++ .+.+..--+...-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999999887766447888999999999999999999999998631 11 112211111224468
Q ss_pred EEEeCCCCEEEEEEC-CCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 635 LRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
++|+.+|.+++.++. ...++||....| ..++.+.+...+.+ -.+.++|-...+
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~kgE~l----~DV~whp~rp~i 308 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTKGEEL----LDVNWHPVRPII 308 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCchhhe----eecccccceeee
Confidence 899999999888774 567999999888 77888887764422 134455544443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=203.53 Aligned_cols=253 Identities=17% Similarity=0.232 Sum_probs=202.5
Q ss_pred cccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCcc-------ccceeecccccCEEEEEEecCCCcEEEEEEeC
Q 001343 402 FKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL-------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~-------~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~ 473 (1096)
...|.+.|+.+.+-|. ...+|+++..+.|.|||...-... +.-..|.+|.+.-++++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 3458999999999995 456677788899999998653221 222368899998899999998776 8999999
Q ss_pred CCcEEEEEc--CCc------eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC--CCCeeeEEeCCCCcEEE
Q 001343 474 DKLIKVWEL--SGR------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (1096)
Q Consensus 474 d~~i~iwd~--~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~ 543 (1096)
|++|++||. .+. +...+.+|...|..++|++... .++.+++.|+.+.|||++ +.+.......|...+.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 999999992 222 3466889999999999998754 689999999999999999 55556677889999999
Q ss_pred EEEcCCCCE-EEEEeeccCCCCeEEEEeCCCC-eeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeE-
Q 001343 544 MLYSADGSR-LFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI- 619 (1096)
Q Consensus 544 l~~s~~~~~-l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~- 619 (1096)
++|+|-+.+ ||+++. |++|.+||+++. +.+.++.+|.. .|..+.|+|.. ..|++++.|+.+.+||+..-..
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 999996654 556665 999999999875 46788999988 89999999975 5677888999999999875211
Q ss_pred -----------EEEeecCCCCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCC
Q 001343 620 -----------LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 620 -----------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 661 (1096)
--.+...+|...|..+.|+|+. ..|++++.|+.+.||.+...
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 1124444556689999999965 57788899999999998643
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=205.59 Aligned_cols=275 Identities=12% Similarity=0.099 Sum_probs=202.7
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE-EEEECCCeEEEEEccC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-~s~~~dg~i~vwd~~~ 437 (1096)
++++++.|+.|.+||+.+++.+.. +..+ ..+.+++|+|+++.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999998876542 3333 346789999999987 5667789999999998
Q ss_pred CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC
Q 001343 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI 516 (1096)
Q Consensus 438 ~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 516 (1096)
++... .+..+. .+..++|+|+++. ++++++.|+.+++|| .+++.+..+.. ...+.+++|+| ++.++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence 87654 243333 3578899999983 345556789999999 67777766653 33467888866 6678888887
Q ss_pred CC-eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc------cceE
Q 001343 517 DG-KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNG 589 (1096)
Q Consensus 517 dg-~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~------~~i~ 589 (1096)
++ .+.+||.++......... ...+..++|+++++.+++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789877665444332 334678999999998865542 278999999999988776653211 1223
Q ss_pred EEEEeCCCCEEEEE-EcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEE-ECCCcEEEEEcCCCcccccc
Q 001343 590 VVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIGLRSLRA 667 (1096)
Q Consensus 590 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~ 667 (1096)
.++|+|++++++++ +.++.+.+||..+++.+..+.. .+ .+.+++|+|+|.+|+++ +.++.|.+||+.++ +.+..
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 57899999986554 5567899999998887765542 22 68899999999999886 46899999999887 44444
Q ss_pred cc
Q 001343 668 VE 669 (1096)
Q Consensus 668 ~~ 669 (1096)
+.
T Consensus 287 ~~ 288 (300)
T TIGR03866 287 IK 288 (300)
T ss_pred EE
Confidence 43
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=197.15 Aligned_cols=288 Identities=15% Similarity=0.193 Sum_probs=223.2
Q ss_pred cccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc---eEEEeeCCCCCeEEEEeeecCCCc-EEEEEECCCeEEEEEc
Q 001343 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR---KLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLY 525 (1096)
Q Consensus 450 h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~ 525 (1096)
-.+.|+++.|+|... ++++|+.|++++||-.+|+ .+..+.-...||.+.+|.| +|. .+++++....++.||+
T Consensus 212 s~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred CcCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC--CCceEEEecccceEEEEeec
Confidence 346899999999999 9999999999999985544 5666666788999999988 555 8999999999999999
Q ss_pred CCCCeeeEEeCC---CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEE
Q 001343 526 DTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA 602 (1096)
Q Consensus 526 ~~~~~~~~~~~~---~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 602 (1096)
.+.+....-... ...+....+++++++|+..|. .|.|.+....+++.+.++.-.. .+..++|+.+++.|++
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~----~G~I~lLhakT~eli~s~KieG--~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN----NGHIHLLHAKTKELITSFKIEG--VVSDFTFSSDSKELLA 361 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEccc----CceEEeehhhhhhhhheeeecc--EEeeEEEecCCcEEEE
Confidence 877665432222 225778889999999999987 9999999999999998887543 7888999999999999
Q ss_pred EEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCc-----cccccccCCCccccc
Q 001343 603 VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL-----RSLRAVENPPFEALR 677 (1096)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~ 677 (1096)
.+.+|.|++||++...++..+...+.. .-++++.++++.++|+|+..|.|.|||..+.. +.+..+.. ..
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN-----Lt 435 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN-----LT 435 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh-----hh
Confidence 999999999999999999988776643 33677788999999999999999999976542 22222222 34
Q ss_pred CcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEc
Q 001343 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (1096)
Q Consensus 678 ~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 757 (1096)
..|+++.|++|++.++.+ +...+..+|+-.+.. ....-.+
T Consensus 436 t~Itsl~Fn~d~qiLAia-----------------------------------S~~~knalrLVHvPS-----~TVFsNf 475 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAIA-----------------------------------SRVKKNALRLVHVPS-----CTVFSNF 475 (514)
T ss_pred eeeeeeeeCcchhhhhhh-----------------------------------hhccccceEEEeccc-----eeeeccC
Confidence 557788888877766222 222345667666642 1122234
Q ss_pred CCCCCCcccEEEEEEecCCceEEEeecCCeEEEeec
Q 001343 758 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1096)
Q Consensus 758 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~ 793 (1096)
|.....-+.|+|++|||.+.+++.|...|.+.+|.+
T Consensus 476 P~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 476 PTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 433335568999999999999999999999999986
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-23 Score=223.87 Aligned_cols=253 Identities=17% Similarity=0.338 Sum_probs=224.2
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
+++.+..+..++|||... +..|...|.|+..-..++.+++|+.|..+-+|.+...
T Consensus 6 ~~m~~~~~t~Lr~~~~~~-------------------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp 60 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE-------------------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP 60 (825)
T ss_pred ccceeeeeeccccccchh-------------------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCC
Confidence 345555566777787642 4458889999998778899999999999999998765
Q ss_pred CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC
Q 001343 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 517 (1096)
..+. .+.+|..+|.++.|+++.. +|++|+.+|+|++|| ..++.++++.||...+.++.|+|. +.+.++|+.|
T Consensus 61 ~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~--~~~~a~gStd 133 (825)
T KOG0267|consen 61 NAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY--GEFFASGSTD 133 (825)
T ss_pred chhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc--eEEecccccc
Confidence 5554 4889999999999999998 899999999999999 999999999999999999999884 5789999999
Q ss_pred CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC
Q 001343 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (1096)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 597 (1096)
+.+.+||.+...+...+.+|...+..+.|+|+|++++.++. |..+++||...|+....|..|.. .+..+.|+|..
T Consensus 134 td~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e----d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e 208 (825)
T KOG0267|consen 134 TDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE----DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLE 208 (825)
T ss_pred ccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC----cceeeeecccccccccccccccc-cccccccCchh
Confidence 99999999999999999999999999999999999999986 89999999999999999999988 78889999998
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
-.++.|+.|+++++||+++.+.+....... ..|.+.+|+|++..+++|...
T Consensus 209 ~Lla~Gs~d~tv~f~dletfe~I~s~~~~~--~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 209 VLLAPGSSDRTVRFWDLETFEVISSGKPET--DGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred hhhccCCCCceeeeeccceeEEeeccCCcc--CCceeeeecCCceeeecCchh
Confidence 889999999999999999988887776653 389999999999999888765
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=200.17 Aligned_cols=300 Identities=17% Similarity=0.241 Sum_probs=214.0
Q ss_pred EEeCC-CcEEEEE-cCCceEEEeeCC-CCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcCCCCeeeEEeCCCCcEEEEE
Q 001343 470 TCGDD-KLIKVWE-LSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1096)
Q Consensus 470 s~s~d-~~i~iwd-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 545 (1096)
+++.| .++.+|| .+|....++++. ...-.++... ++.+++++. ....|.+|.+...........-.+++.+++
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhhhcccccceeeee
Confidence 34444 4599999 999999898875 2222222211 224565554 456789998877666655555667899999
Q ss_pred EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC---------
Q 001343 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--------- 616 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------- 616 (1096)
-+|+|.+++.++. .+.|++|.+.+|.++..+..|-. .|+++.|+.||.+|++|+.||.|.+|.+..
T Consensus 89 s~n~G~~l~ag~i----~g~lYlWelssG~LL~v~~aHYQ-~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 89 SSNLGYFLLAGTI----SGNLYLWELSSGILLNVLSAHYQ-SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred cCCCceEEEeecc----cCcEEEEEeccccHHHHHHhhcc-ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 9999999999876 89999999999999999999887 999999999999999999999999998642
Q ss_pred CeEEEEeecCCCCCCccEEEEeCC--CCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEe
Q 001343 617 VNILTSTDAEGGLPNLPRLRFSKE--GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1096)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~ 694 (1096)
-+++..+..|.- +|+++...+. ..++++++.|.++++||+..+ ..+
T Consensus 164 ~~p~~~f~~Htl--sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LL----------------------------- 211 (476)
T KOG0646|consen 164 VKPLHIFSDHTL--SITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLL----------------------------- 211 (476)
T ss_pred ccceeeeccCcc--eeEEEEecCCCccceEEEecCCceEEEEEeccc-eee-----------------------------
Confidence 234455554443 6777766654 357777777777777777655 111
Q ss_pred cCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEec
Q 001343 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1096)
Q Consensus 695 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1096)
..+. ....+.+++.+|
T Consensus 212 ----------------------------------------------------------lti~------fp~si~av~lDp 227 (476)
T KOG0646|consen 212 ----------------------------------------------------------LTIT------FPSSIKAVALDP 227 (476)
T ss_pred ----------------------------------------------------------EEEe------cCCcceeEEEcc
Confidence 1112 233666777777
Q ss_pred CCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCC--CeeeeeecCCCcEEEEec-C
Q 001343 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE--AVPCIALSKNDSYVMSAT-G 851 (1096)
Q Consensus 775 ~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~--~v~~l~~s~dg~~la~~~-d 851 (1096)
-+..+.+|+.+|.|.+.++........+- ..+..+. .+..+. .+.| |.+ .|+|++++-||.+|++|+ |
T Consensus 228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v-----~~k~~~~-~~t~~~-~~~G--h~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 228 AERVVYIGTEEGKIFQNLLFKLSGQSAGV-----NQKGRHE-ENTQIN-VLVG--HENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred cccEEEecCCcceEEeeehhcCCcccccc-----ccccccc-ccceee-eecc--ccCCcceeEEEEecCccEEEeeCCC
Confidence 77777777777777766654322111100 0111111 122222 3555 766 999999999999999999 8
Q ss_pred CeEEEEEcccceEEEeecCCCCCeeEEEEec
Q 001343 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1096)
Q Consensus 852 g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 882 (1096)
|+|+|||+.+.++++++..-.++|+-+.+.|
T Consensus 299 g~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 299 GKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred CCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 9999999999999999876778999999866
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-21 Score=210.28 Aligned_cols=267 Identities=13% Similarity=0.185 Sum_probs=225.5
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC-CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
..|...-+.|+|.|+|++|++++.||.|++|+.... +... .+.-+...|.+++-. +. .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 458899999999999999999999999999998765 3333 233377788888764 44 799999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.++..-..+....-++.+++++. +|.+++.|+.|-.|++-++........+.+|..+|.++.|+|++++|++.+.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEEec--CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 77766555666677899999954 7789999999999999999999999999999999999999999999999987
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcC-------ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFR-------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
+|.|++||+.++.+..++.+-. ...+..++|+|++..+++.+.|+.|.+|+..+.+....+........+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 9999999999998887765432 2355668999999999999999999999999999999888776665699
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
++.|+|+|.+||+++.||.|.|||..+... | .....|.+++|.|++..+
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------~---~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHER-------H---EFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccchh-------c---cccceeEEEecCCCCCee
Confidence 999999999999999999999999976311 1 123457888898888776
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=201.89 Aligned_cols=278 Identities=14% Similarity=0.218 Sum_probs=213.2
Q ss_pred CCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCE
Q 001343 331 DDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 331 ~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
...|..+...+. |++.|.|+...|.|. +||+|+.||+|+||.+.+|.++.... -.+.|
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~~I 444 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDSEI 444 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------eccee
Confidence 344556665555 999999999999999 79999999999999999999986411 24479
Q ss_pred EEEEEcCCCC--EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEE----eCCCcEEEEE-c
Q 001343 410 SRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC----GDDKLIKVWE-L 482 (1096)
Q Consensus 410 ~~l~~spd~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~----s~d~~i~iwd-~ 482 (1096)
.||+|+|.++ .||++-. ..+.|-+..-|..+.... ... .|+++ ..|+.+..|. .
T Consensus 445 ~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~----------------t~e--ll~~~~~~~~p~~~~~~W~~~ 505 (733)
T KOG0650|consen 445 RSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGP----------------TKE--LLASAPNESEPDAAVVTWSRA 505 (733)
T ss_pred EEEEecCCCCceeEEEEec-CceEEeCccccchhhhcc----------------hhh--hhhcCCCccCCcccceeechh
Confidence 9999999765 4555544 346666655443222100 001 12222 3466788897 3
Q ss_pred CC----ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC---CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 483 SG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 483 ~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
.. .-++..-.|...|..+.||. .|.||++...+ ..|.|.++.......-+....+.|.++.|+|...++++
T Consensus 506 ~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfV 583 (733)
T KOG0650|consen 506 SLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFV 583 (733)
T ss_pred hhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEE
Confidence 11 12344556889999999987 56799887654 56888988877666666666778999999999999998
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC-eEEEEeecCCCCCCccE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~ 634 (1096)
++ ...|++||+..+..++.+..... .+..++++|.|..|+.|+.|+.++.||++-. ++.+.+..|.. .+++
T Consensus 584 aT-----q~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~--avr~ 655 (733)
T KOG0650|consen 584 AT-----QRSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK--AVRS 655 (733)
T ss_pred Ee-----ccceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh--hhhh
Confidence 87 78999999999888877766555 7888999999999999999999999999864 56677777765 8999
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEc
Q 001343 635 LRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
++|++.-.++++|+.||++.+|.-
T Consensus 656 Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhccccceeeeecCCCcEEEEee
Confidence 999999999999999999999863
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=202.52 Aligned_cols=288 Identities=17% Similarity=0.206 Sum_probs=211.0
Q ss_pred EEEcC--CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC
Q 001343 350 MDFHP--SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1096)
Q Consensus 350 v~fsp--~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d 427 (1096)
+.|++ +-+.+||.+..||.|.++|......... ..+......|.+.|..+.|-|....|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e-------------e~~lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE-------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchh-------------hhhhcccccccceeEeeccCCCceeEEEccCC
Confidence 44443 3446899999999999999875432210 00111255699999999999977789999999
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCc--------------------
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR-------------------- 485 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~-------------------- 485 (1096)
.++++||++++++...- .+.||.+.|.+++|.|++.. .|++|+.||.|.||| .++.
T Consensus 122 sT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999999998776532 47799999999999999887 899999999999999 3331
Q ss_pred ------eEEEeeCCCCCeEE----EEeeecCCCcEEEEEEC-CCeEEEEEcCCCCeeeE--------EeCC---CCcEEE
Q 001343 486 ------KLFNFEGHEAPVYS----ICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVD--------YDAP---GHWCTT 543 (1096)
Q Consensus 486 ------~~~~~~~~~~~v~~----~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~--------~~~~---~~~i~~ 543 (1096)
.+...+.+...|.+ +.| . |...|++++. |+.|++||++....... +..+ ...+.+
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~f-k--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLF-K--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEE-e--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 01112334444444 443 2 4468888887 99999999987654432 2222 226788
Q ss_pred EEEcCCCCEEEEEeeccCCCCeEEEEeCCCC--eeeEEEcCcCccceE-EEEEeCCCCEEEEEEcCCeEEEEeCCCCeE-
Q 001343 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVNI- 619 (1096)
Q Consensus 544 l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~- 619 (1096)
+.....|.+|++.+. |+.|++|++.+. .++..+.++....+. .-..+|++.++++|+.|...++|.+.+.+.
T Consensus 277 L~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 277 LILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred EEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 888888999988877 999999999754 344555554432222 245689999999999999999999987543
Q ss_pred EEEeecCCCCCCccEEEEeC-CCCEEEEEECCCcEEEEEcCCC
Q 001343 620 LTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
...+.+|.- .|++++|.| .-.-++++++|..+++|++.++
T Consensus 353 ~~~l~Ght~--eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALLLGHTR--EVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhhCcce--EEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 334444443 899999988 3355677799999999999776
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=179.80 Aligned_cols=306 Identities=14% Similarity=0.185 Sum_probs=222.6
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee----------e-----EEeCCCCcEEEEEEcCCCC-EEE
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR----------V-----DYDAPGHWCTTMLYSADGS-RLF 554 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~-----~~~~~~~~i~~l~~s~~~~-~l~ 554 (1096)
+.|.+.|+++.+.+. .|+++++|+.||.|.+||+++.... . ....|.-.|.++.|-|-.. .+.
T Consensus 40 r~HgGsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred ccCCCccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 458889999998776 5799999999999999999865411 0 1123444789999988554 455
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC---CCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
+++. |.++++||..+.+....|.-.. .|..-+++|- .-++++|..+-.|++-|+.+|....++.+|.. .
T Consensus 119 ssSF----DhtlKVWDtnTlQ~a~~F~me~--~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~--~ 190 (397)
T KOG4283|consen 119 SSSF----DHTLKVWDTNTLQEAVDFKMEG--KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD--G 190 (397)
T ss_pred cccc----cceEEEeecccceeeEEeecCc--eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC--c
Confidence 5555 9999999999998888877543 5777777773 34677788899999999999999999999876 8
Q ss_pred ccEEEEeCCC-CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCc
Q 001343 632 LPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1096)
Q Consensus 632 v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~ 710 (1096)
|.++.|+|.. -.|++|+.||.|++||+....-+...+..+....
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~----------------------------------- 235 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR----------------------------------- 235 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc-----------------------------------
Confidence 9999999955 5678999999999999965433444333332100
Q ss_pred CCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEE
Q 001343 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 790 (1096)
Q Consensus 711 ~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~v 790 (1096)
+.... +-+. |.+.+..++|+.++.++++.+.|..+++
T Consensus 236 --------------------------------------~p~~~--~n~a---h~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 236 --------------------------------------PPILK--TNTA---HYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred --------------------------------------Ccccc--cccc---ccceeeeeeecccchhhhhccCccceEE
Confidence 00000 1122 8899999999999999999999999999
Q ss_pred eeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecC
Q 001343 791 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS 870 (1096)
Q Consensus 791 w~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~ 870 (1096)
|+...+..... +.|....+.-.+ ..-.|.+++ .+.++..-.++.+.++++-.|..++.+..
T Consensus 273 wn~~~G~ntl~--------------~~g~~~~n~~~~--~~~~~~~~~---s~vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 273 WNMESGRNTLR--------------EFGPIIHNQTTS--FAVHIQSMD---SDVFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred eecccCccccc--------------cccccccccccc--ceEEEeecc---cceEEEEecCCeEEEEEccCceEEEeeec
Confidence 99866433111 111111111111 011122111 22333444478999999999999999999
Q ss_pred CCCCeeEEEEecCCCcEEEEeeCCCeEEEEeec
Q 001343 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1096)
Q Consensus 871 h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~ 903 (1096)
|...|.|.++-| +-+.+.+|..|+.|..|-..
T Consensus 334 h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 334 HLKRINCAAYRP-DFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ccceeeEEeecC-chhhhhccccCCcccccccc
Confidence 999999999999 88899999999999999763
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=212.05 Aligned_cols=247 Identities=13% Similarity=0.221 Sum_probs=197.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVA 424 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~ 424 (1096)
.+..|+|+..-..+|||++..|.|.+||+.... +.+ +..+|..|+..|+++.|++ ...+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--rnk--------------~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI--RNK--------------LLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc--cch--------------hhhHhhhhccceeeeeeccCCccEEEec
Confidence 466788886656689999999999999997621 110 1124888999999999998 46788999
Q ss_pred ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeEEEEe
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICP 502 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~ 502 (1096)
+.||+|++||+...+-.. ++.+....|.++.|+|...+ .++++.+.|.+++|| ...++...+.+|.++|.++.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999866554 56678899999999997655 899999999999999 566788889999999999999
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-CCcEEEEEEcCCCCEEE-EEeeccCCCCeEEEEeCCCC-eeeEE
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLF-SCGTSKDGDSFLVEWNESEG-TIKRT 579 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~-~~~~~~~~~~~i~iwd~~~~-~~~~~ 579 (1096)
+| ++.+|++||.|+.|+|||+...........+ ..++..+.|-|...+.+ +++. -.+..|++||++.. -+..+
T Consensus 229 hP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 98 6789999999999999999866554444333 44899999999877644 4432 23889999999865 45677
Q ss_pred EcCcCccceEEEEEeC-CCCEEEEEEcCCeEEEEeCCCC
Q 001343 580 YAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
+..|.. .++.++|.. +...+.+++.||.|..-.+++.
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 888887 888899865 4467788889988876665554
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-21 Score=208.01 Aligned_cols=296 Identities=12% Similarity=0.143 Sum_probs=224.0
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~ 422 (1096)
+....++...++-.. +++++ .....||.+....... ++.+.. .. -..-...+..|.|.. +.++||
T Consensus 39 k~~~nAIs~nr~~~q-iv~AG-rs~lklyai~~~~~~~--~~~~~~-----k~-----kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQ-IVVAG-RSLLKLYAINPNDFSE--KCNHRF-----KT-----KQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcce-eEEec-ccceeeEeeCcccCCc--ceeeec-----cc-----ccceeeehhhcccccchhhhhe
Confidence 345677778888776 44442 3466777665432211 111100 00 001122456678875 578999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~ 501 (1096)
+++..|.|.+||+.....-+.+..+..|...++++.|++.... +|++||.||+|++|| ...+...++.+....|..|.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873333333368899999999999998877 899999999999999 88888888998999999999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCC-eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
|+|.. +.+++++...|.+++||++... ....+..|.++|.++.|+|++.+|++||. |+.|+|||+.+.+.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99875 6899999999999999998644 45688999999999999999999999997 999999999877655555
Q ss_pred cCcCccceEEEEEeCCCCE-EEEEE--cCCeEEEEeCCCC-eEEEEeecCCCCCCccEEEEeC-CCCEEEEEECCCcEEE
Q 001343 581 AGFRKKSNGVVQFDTTQNH-FLAVG--EDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 655 (1096)
.-+...++..+.|-|...+ |++++ .|-.|+|||++.. -+..++..|.. .++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc--cccceeccCCCceeeEeecCccHHHH
Confidence 5455568999999997754 55554 6889999999764 34556666654 889999976 5678889999998776
Q ss_pred EEcCCC
Q 001343 656 LANAIG 661 (1096)
Q Consensus 656 wd~~~~ 661 (1096)
-...++
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 555444
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-19 Score=193.19 Aligned_cols=274 Identities=12% Similarity=0.063 Sum_probs=200.1
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
+|+.+. ++.+..+.+...+.+++|+|+|+.++++++.++.|++||..+++.+.. +..+.
T Consensus 15 ~~d~~t--~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~ 73 (300)
T TIGR03866 15 VIDTAT--LEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT-------------------LPSGP 73 (300)
T ss_pred EEECCC--CceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-------------------ccCCC
Confidence 676654 445666665566889999999996557788899999999998876532 22222
Q ss_pred CCEEEEEEcCCCCEEEEE-ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC-cEEEEE-cC
Q 001343 407 ISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKVWE-LS 483 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~-~i~iwd-~~ 483 (1096)
.+..++|+|+++.++++ +.++.|++||+.+++.+. .+. +...+.+++|+|+++ .+++++.++ .+.+|| .+
T Consensus 74 -~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~---~~~-~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 74 -DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLA---EIP-VGVEPEGMAVSPDGK--IVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred -CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe---Eee-CCCCcceEEECCCCC--EEEEEecCCCeEEEEeCCC
Confidence 35678999999988655 568999999999876554 232 234578899999999 777777665 567789 66
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEE-EEECCCeEEEEEcCCCCeeeEEeCCC-------CcEEEEEEcCCCCEEEE
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIF-STAIDGKIKAWLYDTMGSRVDYDAPG-------HWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~i~~l~~s~~~~~l~~ 555 (1096)
++.+..... .....+++|++ ++++++ ++..++.|++||+++.+....+..+. .....++|+|+++++++
T Consensus 147 ~~~~~~~~~-~~~~~~~~~s~--dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 147 YEIVDNVLV-DQRPRFAEFTA--DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred CeEEEEEEc-CCCccEEEECC--CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 666555432 23456778866 566775 44569999999999887655443221 12456889999998765
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE-EcCCeEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
+.. .++.+.+||..+++.+..+... . .+.+++|+|++.+|+++ +.+|.|.+||+.+++.+..+.... ..+.
T Consensus 224 ~~~---~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~ 295 (300)
T TIGR03866 224 ALG---PANRVAVVDAKTYEVLDYLLVG-Q-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR---LPWG 295 (300)
T ss_pred EcC---CCCeEEEEECCCCcEEEEEEeC-C-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc---ccce
Confidence 432 1567999999998887665422 2 57789999999999886 468999999999999999887643 4588
Q ss_pred EEEeC
Q 001343 635 LRFSK 639 (1096)
Q Consensus 635 ~~~s~ 639 (1096)
++++|
T Consensus 296 ~~~~~ 300 (300)
T TIGR03866 296 VVVRP 300 (300)
T ss_pred eEeCC
Confidence 88765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-22 Score=213.04 Aligned_cols=232 Identities=11% Similarity=0.195 Sum_probs=211.1
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
|...|.|+..-..++ .+++|+.|..+-+|.+.....+.. |.+|..+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcchhhhc
Confidence 888999999977777 799999999999999876554432 789999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~ 501 (1096)
+|+.+|+|++||++.++.++ +|.+|...+..+.|+|-+. +.++|+.|+.+++|| ....|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988887 6889999999999999999 889999999999999 77889999999999999999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
|.| +|.++++|+.|.+++|||...++....+..|...+.++.|+|..-.++.|+. ++.+++||+++.+.+....
T Consensus 162 lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 977 7799999999999999999999999999999999999999999988999887 9999999999999888877
Q ss_pred CcCccceEEEEEeCCCCEEEEEEcC
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAVGED 606 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1096)
.... .+.+..|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7755 78899999999988887654
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.3e-20 Score=176.82 Aligned_cols=254 Identities=11% Similarity=0.150 Sum_probs=191.3
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC-CccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~ 478 (1096)
-.+|.+-|+|+.|.+.|+.+|+|+.|++|+|||.+.. .........+.|.+.|..+.|.+. |+ .+++|+.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 5679999999999999999999999999999996543 233444467899999999999764 55 999999999999
Q ss_pred EEE-cCC---------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE------Ee-------
Q 001343 479 VWE-LSG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD------YD------- 535 (1096)
Q Consensus 479 iwd-~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~------- 535 (1096)
||. ... ....++....+.|+.+.|.|..-|-.+++++.||++|||+.-....... +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 998 211 1234566778899999999998899999999999999997654333221 11
Q ss_pred CCCCcEEEEEEcCC---CCEEEEEeec-cCCCCeEEEEeCCCC----eeeEEEcCcCccceEEEEEeCCC----CEEEEE
Q 001343 536 APGHWCTTMLYSAD---GSRLFSCGTS-KDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAV 603 (1096)
Q Consensus 536 ~~~~~i~~l~~s~~---~~~l~~~~~~-~~~~~~i~iwd~~~~----~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~ 603 (1096)
.+.....|+.|+|. ..+|++++.+ ...-+.++||....+ ..+.++.+|.. +|..++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23336788999864 3467776642 112247778875432 34556777777 99999999963 468889
Q ss_pred EcCCeEEEEeCCCCe-----------------EEEEe-ecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 604 GEDSQIKFWDMDNVN-----------------ILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 604 ~~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+.|| |+||++.... .+..+ ....|.+.|..+.|+-.|..|++.++||.|++|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 12222 233455599999999999999999999999999753
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=191.08 Aligned_cols=277 Identities=16% Similarity=0.201 Sum_probs=207.4
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1096)
.|..++|-|||..++.+. +..+.+||...|..++++++|.+ .|.+++|+.+|..+++|+.|..|.+|+-.-...
T Consensus 14 ci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-----CCEEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 789999999999988876 77899999999999999999998 999999999999999999999999998754333
Q ss_pred EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCC
Q 001343 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~ 699 (1096)
++- +|...|.|+.|+|-...|++++-. ..-+|...... ...+ .....+.+++|..||++
T Consensus 88 LkY----SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-----V~K~---kss~R~~~CsWtnDGqy-------- 146 (1081)
T KOG1538|consen 88 LKY----SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-----VSKH---KSSSRIICCSWTNDGQY-------- 146 (1081)
T ss_pred eee----ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-----HHhh---hhheeEEEeeecCCCcE--------
Confidence 321 233489999999999999988764 56788764431 1111 11233556666655555
Q ss_pred ceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCC---
Q 001343 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA--- 776 (1096)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~--- 776 (1096)
++.|-.+|+|.+-+-. ...-..+.-|| +..++|.+++|+|..
T Consensus 147 -----------------------------lalG~~nGTIsiRNk~----gEek~~I~Rpg--g~Nspiwsi~~~p~sg~G 191 (1081)
T KOG1538|consen 147 -----------------------------LALGMFNGTISIRNKN----GEEKVKIERPG--GSNSPIWSICWNPSSGEG 191 (1081)
T ss_pred -----------------------------EEEeccCceEEeecCC----CCcceEEeCCC--CCCCCceEEEecCCCCCC
Confidence 4677777888887654 22222333333 378899999999964
Q ss_pred --ceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCe
Q 001343 777 --VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGK 853 (1096)
Q Consensus 777 --~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~ 853 (1096)
..+.+...+.++.+|.++. +.+ |+.. +-.....|+.+-++|.++..|+ |+.
T Consensus 192 ~~di~aV~DW~qTLSFy~LsG-------~~I------------gk~r-------~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 192 RNDILAVADWGQTLSFYQLSG-------KQI------------GKDR-------ALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred ccceEEEEeccceeEEEEecc-------eee------------cccc-------cCCCCchhheeccCCcEEEEccCCCc
Confidence 3355666677777776643 211 1100 1234567889999999998888 788
Q ss_pred EEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccce
Q 001343 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 854 v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~ 906 (1096)
+++|. +.|-.+.++-.....|+.++..| ++++++.|+.||+|.-|++..+.
T Consensus 246 L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 246 LSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred eEEEe-ecCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhhHHhH
Confidence 99998 47788888877778999999999 99999999999999999987655
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=175.43 Aligned_cols=253 Identities=13% Similarity=0.206 Sum_probs=192.2
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CCC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~ 419 (1096)
+|.+-|.|+.|.+.|++ +|+|+.|++|+|||.......- .. ....+.|.+.|..|.|.+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W-------~~--------Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTW-------SC--------TSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCce-------EE--------eeeEEecCCcEEEEEecCccccc
Confidence 48899999999999996 9999999999999975543221 11 112566999999999976 499
Q ss_pred EEEEEECCCeEEEEEccCC------CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE---
Q 001343 420 YVGVAFTKHLIQLYSYAGS------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN--- 489 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~------~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~--- 489 (1096)
.+|+++.|+++.||.-... .......++......|+++.|.|....+.+++++.||++|||+ .+--.+..
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 9999999999999976321 1122223566778899999999988888999999999999999 54332222
Q ss_pred ---ee-------CCCCCeEEEEeeecCC-CcEEEEEECC-----CeEEEEEcCCCCe----eeEEeCCCCcEEEEEEcCC
Q 001343 490 ---FE-------GHEAPVYSICPHHKEN-IQFIFSTAID-----GKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSAD 549 (1096)
Q Consensus 490 ---~~-------~~~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~ 549 (1096)
+. .+..+..|+.|+++.- ..+|++|+.+ +.+.||....... ..++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 22 4667788999987543 2466666655 4889997765542 2356788889999999996
Q ss_pred C----CEEEEEeeccCCCCeEEEEeCCCC--------------------eeeEEEcCcCccceEEEEEeCCCCEEEEEEc
Q 001343 550 G----SRLFSCGTSKDGDSFLVEWNESEG--------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 550 ~----~~l~~~~~~~~~~~~i~iwd~~~~--------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
- ..|++++. || |+||.++.. +.+..+.+|+. .+..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 3 35677765 77 999998731 23455677776 8899999999999999999
Q ss_pred CCeEEEEeCCC
Q 001343 606 DSQIKFWDMDN 616 (1096)
Q Consensus 606 dg~i~iwd~~~ 616 (1096)
||.|++|...-
T Consensus 309 DG~VRLWkany 319 (361)
T KOG2445|consen 309 DGCVRLWKANY 319 (361)
T ss_pred Cceeeehhhhh
Confidence 99999998653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-21 Score=217.13 Aligned_cols=295 Identities=15% Similarity=0.262 Sum_probs=226.2
Q ss_pred EEEEEcCCCCcEEEEEeC----------CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 348 ISMDFHPSHQTLLLVGSS----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
..++|||++..++|+|.. +.++.||.+.-...... ++...-..-....+.++|.+.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~d--------------lk~~~s~~s~~rF~kL~W~~~ 75 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSD--------------LKPVGSLQSSNRFNKLAWGSY 75 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccc--------------ccccccccccccceeeeeccc
Confidence 467899999767887743 34555555432221100 000001113457889999998
Q ss_pred CCE----EEEEECCCeEEEEEccC---CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE
Q 001343 418 GNY----VGVAFTKHLIQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 418 ~~~----l~s~~~dg~i~vwd~~~---~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 489 (1096)
|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++.+.. +|++|+.||.|.||| .+-+.-.+
T Consensus 76 g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~~ 154 (1049)
T KOG0307|consen 76 GSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPFT 154 (1049)
T ss_pred CCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCCC
Confidence 776 88889999999999875 4444444467789999999999998876 899999999999999 44333333
Q ss_pred e--eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC--cEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 490 F--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 490 ~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
+ ....+.|.+++|+.. ..+.|++++.+|++.|||++..+.+..+..+.. .+..++|+|+...-+....+.++.-.
T Consensus 155 ~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 155 PGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPV 233 (1049)
T ss_pred CCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCce
Confidence 3 224567999999754 457899999999999999999988887766655 58899999987644433335566889
Q ss_pred EEEEeCCCC-eeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC-C
Q 001343 566 LVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-N 642 (1096)
Q Consensus 566 i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~ 642 (1096)
|.+||++.. ..++++.+|.. .+.++.|++.+ .++++++.|++|.+|+.++++.+..+...+. .+..+.|+|.. .
T Consensus 234 iqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P~ 310 (1049)
T KOG0307|consen 234 IQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNPS 310 (1049)
T ss_pred eEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCcc
Confidence 999998754 56778888887 78889999976 7889999999999999999999999987655 89999999955 5
Q ss_pred EEEEEECCCcEEEEEcCCC
Q 001343 643 LLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+++++.||.|.||.+...
T Consensus 311 ~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 311 VMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred hhhhheeccceeeeeeecC
Confidence 8999999999999998766
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=188.50 Aligned_cols=252 Identities=13% Similarity=0.141 Sum_probs=193.2
Q ss_pred EEEEEEcC-------CCCEEEEEECCCeEEEEEccCCCccccc------------------eeecccccCEEEEEEecCC
Q 001343 409 VSRVAWSP-------DGNYVGVAFTKHLIQLYSYAGSNDLRQH------------------SQIDAHVGAVNDLAFAYPN 463 (1096)
Q Consensus 409 V~~l~~sp-------d~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------~~l~~h~~~v~~l~~s~d~ 463 (1096)
-.|++|-. -|+|+|+|+.|..|.|||+.--..+... ....+|+..|..++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 3789999999999999998632221111 1134799999999999887
Q ss_pred CcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEE
Q 001343 464 KLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT 542 (1096)
Q Consensus 464 ~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 542 (1096)
+. +|+|||.|.+|++|| .+|++..++..|...|.++.|++. ...+|++|+.|+++.+.|.+.....-..-.-.+.|-
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 76 899999999999999 999999999999999999999987 458999999999999999985333222222244688
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC-eeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEE
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
.++|.|.....+.++. .+|.++-+|++.. +++.+++.|.+ .|.++++++.- .++++++.|+.|++|++......
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 9999998876666554 2999999999875 89999999988 89999998754 57888999999999998764442
Q ss_pred EEeecCCCCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCCccccc
Q 001343 621 TSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLR 666 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~ 666 (1096)
......-..+...|.++.|+- ..++.|+..+.+++||+.+.....+
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 222211112245677788854 5778888888999999987744333
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-20 Score=193.48 Aligned_cols=287 Identities=20% Similarity=0.212 Sum_probs=208.0
Q ss_pred EEEcC---CCCEEEEEECCCeEEEEEccCCCcc---ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 412 VAWSP---DGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 412 l~~sp---d~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
..|++ ....||.+..||.|.++|......- +.+.....|...|.++.|.| |+. .|++++.|.++++|| ..+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeeccc
Confidence 56665 3557899999999999998764322 22345678999999999999 554 899999999999999 777
Q ss_pred ceEEE--eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee---------------------------eEEe
Q 001343 485 RKLFN--FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---------------------------VDYD 535 (1096)
Q Consensus 485 ~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------~~~~ 535 (1096)
+++.. +.||...|.++||.+. |...+++|+.||.|.|||++..... ....
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred eeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 77766 8999999999999987 4578999999999999998744310 0111
Q ss_pred CCCCcEEE---EEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE--------EcCcCc--cceEEEEEeCCCCEEEE
Q 001343 536 APGHWCTT---MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--------YAGFRK--KSNGVVQFDTTQNHFLA 602 (1096)
Q Consensus 536 ~~~~~i~~---l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--------~~~~~~--~~i~~~~~~~~~~~l~~ 602 (1096)
.+...|.+ +.+..|...|++++. .|+.|++||++....... +..+.. ..+.++..+..|.++++
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A 288 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA 288 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence 22334555 666689999998875 499999999986543322 222211 13455677777899998
Q ss_pred EEcCCeEEEEeCCCCe--EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcc
Q 001343 603 VGEDSQIKFWDMDNVN--ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (1096)
Q Consensus 603 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 680 (1096)
.+.|+.|++|++.+.. ++..+.++-....-..-..+|++.++++|+.|....+|.+.+.......+.+|..+ |
T Consensus 289 sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e-----V 363 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE-----V 363 (720)
T ss_pred EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE-----E
Confidence 8889999999997643 33333332221112233568999999999999999999998887777777777654 5
Q ss_pred eeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeee
Q 001343 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1096)
Q Consensus 681 ~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 745 (1096)
..+.|.|. +.. -++++++|.++++|++..
T Consensus 364 t~V~w~pS-----------------------------------~~t-~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 364 TTVRWLPS-----------------------------------ATT-PVATCSDDFRVKIWRLSN 392 (720)
T ss_pred EEEeeccc-----------------------------------cCC-CceeeccCcceEEEeccC
Confidence 56666543 222 245668999999999864
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=179.23 Aligned_cols=303 Identities=16% Similarity=0.221 Sum_probs=216.6
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+...+|..+.|.+++...+|||+.|..|+||.+..++.-... .++ . -...+..|...|+++.|+|+|..|
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~~V--------~-y~s~Ls~H~~aVN~vRf~p~gelL 80 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-MKV--------E-YLSSLSRHTRAVNVVRFSPDGELL 80 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-eeE--------E-EeecccCCcceeEEEEEcCCcCee
Confidence 445789999999998756999999999999999876543210 010 0 123588999999999999999999
Q ss_pred EEEECCCeEEEEEcc--------C-----CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE
Q 001343 422 GVAFTKHLIQLYSYA--------G-----SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~--------~-----~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 487 (1096)
|+|+.+|.|.+|... + .+.....+.+.+|...|..++|+|++. ++++++-|.++++|| ..|+.+
T Consensus 81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeE
Confidence 999999999999866 2 111223346789999999999999999 899999999999999 999999
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-------------------CCCC----cEEEE
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------------------APGH----WCTTM 544 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~----~i~~l 544 (1096)
..+..|...+..++|.| -++++++-+.|...+.+++...+...... .|.. -...+
T Consensus 159 ~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 99999999999999977 44899999988877776655433222110 1111 24568
Q ss_pred EEcCCCCEEEEEeeccCC-----CCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeC------------------CCCEE
Q 001343 545 LYSADGSRLFSCGTSKDG-----DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDT------------------TQNHF 600 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~-----~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l 600 (1096)
+|+|+|.++++...--.- -+..++++-.. .++...+.+... ....+.++| .+-.+
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEE
Confidence 899999999875321110 12234444322 123333333333 333333332 22234
Q ss_pred EEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.++ ...|++||.++..++.....- |...+++++|++||..++..+.||...+..++..
T Consensus 316 aiAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 316 AIAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EEee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 4444 458999999998888776543 2448999999999999999999998877766544
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-19 Score=187.99 Aligned_cols=319 Identities=10% Similarity=0.228 Sum_probs=236.0
Q ss_pred eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC--CEEEEEECCCcE
Q 001343 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG--NLLAVTTADNGF 653 (1096)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i 653 (1096)
+-..+.+|.+ .+.++...|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.+++|+|.+ ..||++.... +
T Consensus 392 ~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~~-~ 466 (733)
T KOG0650|consen 392 CALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGEC-V 466 (733)
T ss_pred eeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecCc-e
Confidence 3456788888 89999999999999999999999999999999999998765 69999999965 3455554443 6
Q ss_pred EEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccc--
Q 001343 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTV-- 731 (1096)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-- 731 (1096)
.|.+..-|.+... +...+ .|++
T Consensus 467 ~ivnp~~G~~~e~---~~t~e-----------------------------------------------------ll~~~~ 490 (733)
T KOG0650|consen 467 LIVNPIFGDRLEV---GPTKE-----------------------------------------------------LLASAP 490 (733)
T ss_pred EEeCccccchhhh---cchhh-----------------------------------------------------hhhcCC
Confidence 6655433311110 00000 0011
Q ss_pred --cCCCCCccceeeeeeec--CCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecC---CeEEEeeccCCccCCCCce
Q 001343 732 --DDVTDKPKPWQLAEIVD--SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN---GVQKLWKWHRNEQNPSGKA 804 (1096)
Q Consensus 732 --~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---g~v~vw~~~~~~~~~~g~~ 804 (1096)
...++.+..|.-..... .+-|..+. |...|+.+.|+..|.+|++...+ ..|.|+++.....
T Consensus 491 ~~~~p~~~~~~W~~~~~~e~~~~v~~~I~------~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s------ 558 (733)
T KOG0650|consen 491 NESEPDAAVVTWSRASLDELEKGVCIVIK------HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS------ 558 (733)
T ss_pred CccCCcccceeechhhhhhhccceEEEEe------cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc------
Confidence 12235666776542111 22244444 88899999999999999887663 5677777643211
Q ss_pred eeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCC
Q 001343 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (1096)
Q Consensus 805 ~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d 884 (1096)
. ..|.- ..+.|.++.|.|..-+|++++...|+|||+....+++.+......|.+++++| .
T Consensus 559 -------------Q----~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~ 618 (733)
T KOG0650|consen 559 -------------Q----SPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-N 618 (733)
T ss_pred -------------c----Cchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-C
Confidence 1 12221 46778999999999999999999999999988888888888888999999999 8
Q ss_pred CcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcc---
Q 001343 885 NNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDAS--- 960 (1096)
Q Consensus 885 ~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~--- 960 (1096)
|.-|+.|+.|+.+..+|+.-+. ++.+.+.-|.. .+++|+|++.-.++++ +.|+++.|+.-.
T Consensus 619 GDnli~gs~d~k~~WfDldlss--------------kPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSS--------------KPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCc--------------chhHHhhhhhh-hhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence 9999999999999999998654 36677777776 9999999999999999 567999988542
Q ss_pred ----cc--eeccccccCCC-CCCCceEEEEeeCCcEEEEEecCCcEEEE
Q 001343 961 ----KM--ERIRQWTPQDA-LSAPISCAVYSCNSQLVFATFCDGNIGVF 1002 (1096)
Q Consensus 961 ----~~--~~~~~~~~~~~-~~~~i~~l~~s~dg~~la~~~~dg~i~vw 1002 (1096)
+. -.++.+.+|.. -...|..+.|.|..-+|++++.||+|++|
T Consensus 684 Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 684 DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 11 12344444320 02458889999999999999999999998
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=193.11 Aligned_cols=337 Identities=17% Similarity=0.232 Sum_probs=256.4
Q ss_pred CCCCCCCccccccCCCCCCCCceeecCCccHHHHHhhcCCCCCCCceeecCCCceeeecCCCCcceEEeec-CCCceEEE
Q 001343 272 SIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLH-QGSTVISM 350 (1096)
Q Consensus 272 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~-h~~~V~~v 350 (1096)
+.+.+......-.+.|+.+++..+.+.-...+..+.+++. ...|. |.+.|..|
T Consensus 95 ~~~~~~w~~~~~l~~Re~gss~~f~~~~~~s~~~vqr~~l--------------------------~~kL~~H~GcVntV 148 (559)
T KOG1334|consen 95 ALPRSVWQSGTALHQRELGSSSRFVYEACGSRLFVQRLRL--------------------------QKKLNKHKGCVNTV 148 (559)
T ss_pred ccCccccchhhHHHhhhcCchhHHHHHhhhhHHHHHHhhh--------------------------hhcccCCCCcccee
Confidence 3333333333334455666667777777777777666665 33444 99999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CCCEEEEEECCC
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAFTKH 428 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~~~dg 428 (1096)
.|+..|. .|++|+.|..|.+||+.++..... ...||...|..-.|-| +.+.+++++.||
T Consensus 149 ~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 149 HFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred eecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCcCceeccccC
Confidence 9999999 799999999999999999887643 3578999999999988 467899999999
Q ss_pred eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe---eCCCC---CeEEEE
Q 001343 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---EGHEA---PVYSIC 501 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~---~~~~~---~v~~~~ 501 (1096)
.|++=.+...........+..|.++|.-++.-|+... .|.+++.|+.+.-.| ..+.+...+ +.+.. ....++
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 9999887655555444457789999999999999887 799999999999999 555443322 23333 467888
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCee------eEEe------CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR------VDYD------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~------~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
.+|.. ...+++|+.|..+++||.+..... ..+. ...-.|++++|+.++.-+++... +-.|+++
T Consensus 289 ~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn----De~IYLF 363 (559)
T KOG1334|consen 289 VDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN----DEDIYLF 363 (559)
T ss_pred cCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec----ccceEEe
Confidence 88764 458999999999999998753332 1111 12237999999988777776665 8889998
Q ss_pred eCCC--C----------eeeE-EEcCcCcc-ceEEE-EEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 570 NESE--G----------TIKR-TYAGFRKK-SNGVV-QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 570 d~~~--~----------~~~~-~~~~~~~~-~i~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
.-.. | ..+. .++||.+. .|..+ .|.|...++++|++-|.|.||+-.+++.+..+.+..+ -|+|
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVNC 441 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNC 441 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--eEec
Confidence 5432 2 2233 37888763 34444 4678889999999999999999999999999988877 8999
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.-+|--..||+.+-|..|+||...+.
T Consensus 442 LEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 442 LEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred cCCCCCCchhhccCCccceeeecCCcc
Confidence 999999999999999999999987443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-19 Score=173.02 Aligned_cols=289 Identities=16% Similarity=0.255 Sum_probs=211.0
Q ss_pred CCCceEEEEEcC----CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-
Q 001343 343 QGSTVISMDFHP----SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1096)
Q Consensus 343 h~~~V~~v~fsp----~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 417 (1096)
|+.+|..++|++ +....+|+.+ ...+.||+.....-+.. ++...-..|......++|+-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceee--------------eeeccCCCCCcceEEEEEEecC
Confidence 889999999995 2233666654 56888888764332110 011112247778888999875
Q ss_pred ---CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe---
Q 001343 418 ---GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--- 490 (1096)
Q Consensus 418 ---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~--- 490 (1096)
.-+||.|+.-|.|+|.|+.++++.+ .+.+|...|+.+.|.|+..+ +++++|.|.+|++|+ .++.++..|
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 3478999999999999999988877 57899999999999999877 899999999999999 889998876
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE----------------------------EeCCCCcEE
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----------------------------YDAPGHWCT 542 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------~~~~~~~i~ 542 (1096)
.||.+.|.++.|+. +|.+|++++.|.+|++|++...+.... ...|...|.
T Consensus 178 egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 67999999999977 567999999999999999884322110 011222233
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCC-CCe-------------eeEEEcCcCccceEE--EEEeCCCCEEEEEEcC
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGT-------------IKRTYAGFRKKSNGV--VQFDTTQNHFLAVGED 606 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~-~~~-------------~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d 606 (1096)
|+.|- |+++++-+. ++.|..|... -++ ....+..... .+.- .+|+|-++.|+.|...
T Consensus 256 Cvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred HHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccCC
Confidence 33332 567777665 8899999872 111 1222332222 3333 3456667899999999
Q ss_pred CeEEEEeCCCCeE--EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 607 SQIKFWDMDNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 607 g~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
|.|++||++..++ ..++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999998665 2334444445589999999999999999999999999853
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-16 Score=184.17 Aligned_cols=368 Identities=25% Similarity=0.419 Sum_probs=271.1
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCC-eeecccceeecccccCccccccccccCC-CCEEEEEE-cC
Q 001343 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAW-SP 416 (1096)
Q Consensus 340 ~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-sp 416 (1096)
...|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ ++
T Consensus 61 ~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 120 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSSP 120 (466)
T ss_pred eeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEECC
Confidence 345899999999999999 68888899999999998876 3321 33322 46777777 88
Q ss_pred CCC-EEEEEEC-CCeEEEEEccC-CCccccceeecccccCEEEEEEecCCCcEEEEEEeC-CCcEEEEE-cCCceEEEee
Q 001343 417 DGN-YVGVAFT-KHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNFE 491 (1096)
Q Consensus 417 d~~-~l~s~~~-dg~i~vwd~~~-~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~~i~iwd-~~~~~~~~~~ 491 (1096)
++. +++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|+ ..+..+..+.
T Consensus 121 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 121 DGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred CcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeec
Confidence 888 5555444 89999999987 43333 5778999999999999999 7888885 99999999 7788899999
Q ss_pred CCCCCeEEEEeeecCCCc-EEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 492 GHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
+|...|.+++|.+ ++. .+++++.|+.|++||...+.... .+..|.... ...|++++..+++++. ++.+++|
T Consensus 196 ~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~ 268 (466)
T COG2319 196 GHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLW 268 (466)
T ss_pred cCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEe
Confidence 9999999999985 445 55555999999999888666666 566666664 4489999988887776 9999999
Q ss_pred eCCCCee-eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee--cCCCCCCccEEEEeCCCCEEEE
Q 001343 570 NESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD--AEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 570 d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
+...... ...+.+|.. .+.++.|.|++..+++++.|+.+.+|+........... .+.. .+..+.|.+++..++.
T Consensus 269 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 345 (466)
T COG2319 269 DLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVS 345 (466)
T ss_pred eecCCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEE
Confidence 9987664 444455544 88889999988888888888899999998887766665 4433 6888888433355655
Q ss_pred E-ECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCC
Q 001343 647 T-TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1096)
Q Consensus 647 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d 725 (1096)
+ ..|+.+.+|+..... ......... .+..+.+.+ ....
T Consensus 346 ~~~~d~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~-~~~~--------------------------------- 384 (466)
T COG2319 346 GGSDDGTIRLWDLRTGK-PLKTLEGHS------NVLSVSFSP-DGRV--------------------------------- 384 (466)
T ss_pred eecCCCcEEeeecCCCc-eeEEecCCc------eEEEEEECC-CCCE---------------------------------
Confidence 5 678899999987763 111111110 033444443 2111
Q ss_pred CCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeecc
Q 001343 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 794 (1096)
Q Consensus 726 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~ 794 (1096)
...+..++.+.+|+... ..... .... +...+....+++++..++.++.++.+++|+..
T Consensus 385 ---~~~~~~~~~~~~~~~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 385 ---VSSGSTDGTVRLWDLST----GSLLR-NLDG---HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred ---EEEecCCCceEEEeccc----Ceeee-eccC---CCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 11246678999999872 33322 2211 11789999999999988888888999999863
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=178.20 Aligned_cols=286 Identities=12% Similarity=0.109 Sum_probs=214.1
Q ss_pred ceeeecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 325 HQTWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
..+|++.+........-. -...|..+.|+......+|+-+.|..|++|.-. |+ ..+ +.+ . ..+.
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~-~~~--Vp~----------~-~k~~ 78 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GK-TPE--VPR----------V-RKLT 78 (673)
T ss_pred eEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEeccc-CC-CCc--cce----------e-eccc
Confidence 348888776654443322 233499999998875234444567889999743 33 110 000 0 0122
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
+. .-.|++......|+++|+..++|+|||+....+.+ .+.+|...|+++.++..+. +|++++..|.|.|.. .
T Consensus 79 gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~De--yiAsvs~gGdiiih~~~ 151 (673)
T KOG4378|consen 79 GD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDE--YIASVSDGGDIIIHGTK 151 (673)
T ss_pred cc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcc--eeEEeccCCcEEEEecc
Confidence 22 33455555555899999999999999999644444 5889999999999999888 899999999999999 7
Q ss_pred CCceEEEeeCCCC-CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-eCCCCcEEEEEEcCCCC-EEEEEeec
Q 001343 483 SGRKLFNFEGHEA-PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGS-RLFSCGTS 559 (1096)
Q Consensus 483 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~-~l~~~~~~ 559 (1096)
++.....|....+ .|.-+.+++.. ..+|.+++.+|.|.+||+........+ ..|..+...++|+|... .+++.+.
T Consensus 152 t~~~tt~f~~~sgqsvRll~ys~sk-r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~- 229 (673)
T KOG4378|consen 152 TKQKTTTFTIDSGQSVRLLRYSPSK-RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY- 229 (673)
T ss_pred cCccccceecCCCCeEEEeeccccc-ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc-
Confidence 7777667764434 45578888764 357888999999999999987777654 46777899999999665 5566776
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecCCCCCCccEEEEe
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
|..|++||....+....+.... +...++|+++|.+|++|...|.|+.||++. ..++..+..|.. .|++++|-
T Consensus 230 ---Dkki~~yD~~s~~s~~~l~y~~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~--sVt~vafq 302 (673)
T KOG4378|consen 230 ---DKKINIYDIRSQASTDRLTYSH--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA--SVTRVAFQ 302 (673)
T ss_pred ---cceEEEeecccccccceeeecC--CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc--ceeEEEee
Confidence 9999999999887777766543 688899999999999999999999999986 567788877765 79999998
Q ss_pred CCC
Q 001343 639 KEG 641 (1096)
Q Consensus 639 ~~~ 641 (1096)
|..
T Consensus 303 ~s~ 305 (673)
T KOG4378|consen 303 PSP 305 (673)
T ss_pred ecc
Confidence 765
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=175.14 Aligned_cols=305 Identities=13% Similarity=0.108 Sum_probs=221.0
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCC----eeeEEeCCCCcEEEEEEcCCC-CEEEEEeeccC
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKD 561 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~~~~ 561 (1096)
....+-+..+|++++|+|..+..++++|+.-|.|-+||+.+.+ ....+..|..+|.++.|+|.. ..+++.+.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy--- 255 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY--- 255 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc---
Confidence 3445668889999999999887899999999999999996333 345778888999999999955 46666665
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE-EEEeecCCCCCCccEEEEeC
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~ 639 (1096)
||.|++-|++++.....+..... ..+..+.|+.+...++.+..=|.+.+||++++.. ...+..|.. .|..++++|
T Consensus 256 -DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP 332 (498)
T KOG4328|consen 256 -DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNP 332 (498)
T ss_pred -CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCC
Confidence 99999999987654444433222 2566678888888888888878999999997654 566666655 899999999
Q ss_pred -CCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCC
Q 001343 640 -EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (1096)
Q Consensus 640 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~ 718 (1096)
...+|++++.|++.+|||+..-. +...
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~-------~K~s--------------------------------------------- 360 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLR-------GKAS--------------------------------------------- 360 (498)
T ss_pred CCchheeecccCcceeeeehhhhc-------CCCC---------------------------------------------
Confidence 56789999999999999985431 1000
Q ss_pred CCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCcc
Q 001343 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (1096)
Q Consensus 719 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~ 798 (1096)
-.+..++ |...|.+..|||++..|++.+.|..|+||+..
T Consensus 361 -------------------p~lst~~------------------HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss---- 399 (498)
T KOG4328|consen 361 -------------------PFLSTLP------------------HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS---- 399 (498)
T ss_pred -------------------cceeccc------------------ccceeeeeEEcCCCCceEeeccCCceEEeecc----
Confidence 0011111 88899999999998889999999999999962
Q ss_pred CCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCC-Cee
Q 001343 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-AST 876 (1096)
Q Consensus 799 ~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~-~i~ 876 (1096)
.+.-|+...+....+...| .--.....+|.||..++++|. -..|-|+|-..++.+..+..... .|.
T Consensus 400 ----------~~sa~~~p~~~I~Hn~~t~--RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~ 467 (498)
T KOG4328|consen 400 ----------CISAKDEPLGTIPHNNRTG--RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP 467 (498)
T ss_pred ----------cccccCCccceeeccCccc--ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc
Confidence 1222333333322222211 111233468999999999998 47799999988888888754443 555
Q ss_pred EE-EEecCCCcEEEEe-eCCCeEEEEeec
Q 001343 877 FL-AFHPQDNNIIAIG-TEDSTIHIYNVR 903 (1096)
Q Consensus 877 ~l-~~s~~d~~~l~s~-~~dg~i~iw~~~ 903 (1096)
++ .|+| -+..+++| +..|.|.||.-+
T Consensus 468 ~vn~~HP-~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 468 SVNEFHP-MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cceeecc-cccceeccCCccceEEEEecC
Confidence 54 8999 67645554 567888888543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=172.38 Aligned_cols=266 Identities=16% Similarity=0.198 Sum_probs=188.4
Q ss_pred CcceEEeecCCCceEEEEEcCCCC-cEEEEEeCCCeEEEEecCCCCeee-cccceeecccccCccccccccccCCCCEEE
Q 001343 334 PRTVAVSLHQGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLV-SKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1096)
Q Consensus 334 ~~~~~~~l~h~~~V~~v~fsp~g~-~llasg~~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1096)
|..-.....|.+.|+-+.-++-|+ .++|+=+..|.|.||++...-... .-.+.+-+ +...+...+.+|...=..
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 344455567888899998888764 356666788999999986422111 00010000 111122357899999999
Q ss_pred EEEcCC-CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC---ce
Q 001343 412 VAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RK 486 (1096)
Q Consensus 412 l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~ 486 (1096)
++|||- -..|++|..-+.|++|...+|.-......+.+|+..|-.++|||..+. +|+|||.||+|+||| ..+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 335778877789999999887654434457789999999999998877 899999999999999 666 33
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC---CCeeeEEeCCCCcEEEEEEcCCCC-EEEEEeeccCC
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDG 562 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~~~~~ 562 (1096)
+. .+.|.+.|+.+.|+... .+|++|+.||+++|||++. ++.+..+..|..+|+++.|+|... .+++++.
T Consensus 296 ~~-~kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~---- 368 (440)
T KOG0302|consen 296 VS-TKAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE---- 368 (440)
T ss_pred eE-eeccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----
Confidence 33 38899999999997643 4999999999999999985 445678999999999999999655 4445554
Q ss_pred CCeEEEEeCCCCee----------------eEEEcCc-CccceEEEEEeCCC-CEEEEEEcCCeEEEE
Q 001343 563 DSFLVEWNESEGTI----------------KRTYAGF-RKKSNGVVQFDTTQ-NHFLAVGEDSQIKFW 612 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~----------------~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw 612 (1096)
|.+|.+||+.-..- .+.+-.| .+..+.-+.|+++- .++++.+.||. .||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 99999999863211 1111122 12245557788754 46666667763 444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=177.56 Aligned_cols=291 Identities=12% Similarity=0.139 Sum_probs=215.5
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCc-cc
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSND-LR 442 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~-~~ 442 (1096)
....++|||+...+.... +. -....-.+.++.|+.... .+++.+.|..|++|.-..... +.
T Consensus 10 ~gd~~kl~D~s~~~~~~~--------------~~---~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp 72 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSE--------------YV---HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVP 72 (673)
T ss_pred cCCceEEeecccccCccc--------------cc---cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccc
Confidence 445899999876543321 00 001123499999998764 233345677899997543211 11
Q ss_pred cceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEE
Q 001343 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIK 521 (1096)
Q Consensus 443 ~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (1096)
....+.+. .-.|++...... ++++|+..+.|+||| ....+.+.+++|...|+++.++. ...+|++++..|.|.
T Consensus 73 ~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 73 RVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDII 146 (673)
T ss_pred eeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEE
Confidence 11112222 233443333334 899999999999999 76667788899999999999866 447999999999999
Q ss_pred EEEcCCCCeeeEEeCCCC-cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC-CE
Q 001343 522 AWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NH 599 (1096)
Q Consensus 522 iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 599 (1096)
+..+.++.....+....+ .|.-+.|++..+.+++... .+|.|.+||+....++..+...+..+...++|+|.. ..
T Consensus 147 ih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred EEecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 999998888887776644 5668999999988775443 289999999998888877765555588889999966 56
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCc
Q 001343 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1096)
|++.+.|..|++||.........+.... +...++|.++|.+|+.|...|.|..||+......+..+..|.. .
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-----s 295 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-----S 295 (673)
T ss_pred EEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-----c
Confidence 7778999999999999877776665433 7899999999999999999999999999887677766666543 4
Q ss_pred ceeEEeecCC
Q 001343 680 IESVALKVSA 689 (1096)
Q Consensus 680 v~~~~~s~~g 689 (1096)
|++++|-+.-
T Consensus 296 Vt~vafq~s~ 305 (673)
T KOG4378|consen 296 VTRVAFQPSP 305 (673)
T ss_pred eeEEEeeecc
Confidence 8889998765
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=171.16 Aligned_cols=248 Identities=16% Similarity=0.213 Sum_probs=191.0
Q ss_pred CEEEEEEcC-----CCCEEEEE---ECCCeEEEEEc-cCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 408 SVSRVAWSP-----DGNYVGVA---FTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 408 ~V~~l~~sp-----d~~~l~s~---~~dg~i~vwd~-~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
.|+.++|.. +.++||+. +..|...|.-+ ++|+.-...-.+.||+++|..++|+|-+.. .|+|||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 466666654 46666653 22334444333 344444443457799999999999998776 899999999999
Q ss_pred EEE-cCC-------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC
Q 001343 479 VWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1096)
Q Consensus 479 iwd-~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 550 (1096)
||. ..+ +++..+.||...|..+.|||... +.|++++.|.+|.+|++.+++....+. |...|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 333 35678899999999999999865 689999999999999999999999887 89999999999999
Q ss_pred CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE---cCCeEEEEeCCCCeEEEEeecCC
Q 001343 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~ 627 (1096)
.++++.+. |..|++||.++++.+..-.+|.+.....+.|-.++..+-+|- .+.++-+||..+-+.-..+....
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 99999998 999999999999999998888876666677888888444442 67899999987643322222222
Q ss_pred CCCCccEEEEeCCCCEEEEEE-CCCcEEEEEcCCCc
Q 001343 628 GLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGL 662 (1096)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 662 (1096)
....|.---|.+|..+++.++ .|+.|+-|.+.+..
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 233566667888888887666 59999999997764
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=166.25 Aligned_cols=404 Identities=10% Similarity=0.110 Sum_probs=253.1
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE
Q 001343 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 411 ~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 489 (1096)
-..|||+|+|+|+++.- .+.|=|.++-+.... -.--..|..+.|..|... .|.....|+.|.+|+ ...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 36899999999999765 777888777554332 122456888999988875 566778899999999 77777778
Q ss_pred eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
+.....++.+++|+|++. ++|.+...|-.|.+|.+.+...... ......+..++|+|||++.+.++. .|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 888888999999988432 6777888899999999987766543 233345689999999999998874 1111122233
Q ss_pred eCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEc--CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEE
Q 001343 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1096)
Q Consensus 570 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1096)
.-.....++.+..... ....+.|+|||+.+++-.. +-.|+.|... -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2333445555555544 5667999999987765431 2233322221 157889999999999999
Q ss_pred ECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCC
Q 001343 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDK 727 (1096)
Q Consensus 648 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 727 (1096)
+.|+.+|+.+- +.+.+-|.++-..
T Consensus 229 syD~~lrvlnh------------------------~tWk~f~eflhl~-------------------------------- 252 (447)
T KOG4497|consen 229 SYDQMLRVLNH------------------------FTWKPFGEFLHLC-------------------------------- 252 (447)
T ss_pred ccchhhhhhce------------------------eeeeehhhhccch--------------------------------
Confidence 99999988653 3333333333000
Q ss_pred CccccCCCCC-ccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceee
Q 001343 728 PRTVDDVTDK-PKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 806 (1096)
Q Consensus 728 ~l~s~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~ 806 (1096)
+-.|.+ +.++.-. ... -.-...++.|.|..- ...+|.......+...
T Consensus 253 ----s~~dp~~~~~~ke~-------~~~--------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~---- 300 (447)
T KOG4497|consen 253 ----SYHDPTLHLLEKET-------FSI--------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQM---- 300 (447)
T ss_pred ----hccCchhhhhhhhh-------cch--------hhhcccccccCCCcc---------ccCccccchhhhhhhh----
Confidence 000011 0111000 000 000112344444321 0011111000000000
Q ss_pred ecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC---CeEEEEEcccceEEEeecCCCCCeeEEEEecC
Q 001343 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883 (1096)
Q Consensus 807 ~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d---g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~ 883 (1096)
..++ ...-+... .++. ....+.-++||+|..++|+-.| +.+.+||++..++...+. ...+|....|.|
T Consensus 301 -~pv~---~~~lkp~t-D~pn--Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP- 371 (447)
T KOG4497|consen 301 -TPVK---VHKLKPPT-DFPN--PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP- 371 (447)
T ss_pred -ccee---eecccCCC-CCCC--cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-
Confidence 0000 00011111 2332 4566888999999999999986 569999998877666553 345899999999
Q ss_pred CCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eecc
Q 001343 884 DNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHET 952 (1096)
Q Consensus 884 d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~ 952 (1096)
....|+.+.....+.+|...... ++..+.. .+ .|..++|..+|..++. +.|.
T Consensus 372 ~~prL~vctg~srLY~W~psg~~---------------~V~vP~~-GF-~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 372 GRPRLVVCTGKSRLYFWAPSGPR---------------VVGVPKK-GF-NIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred CCceEEEEcCCceEEEEcCCCce---------------EEecCCC-Cc-eeeeEEecCCCcEEEEEcCCc
Confidence 78888888877789999877644 3344332 34 8999999999999888 5443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-16 Score=172.16 Aligned_cols=461 Identities=11% Similarity=0.096 Sum_probs=275.8
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-----
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----- 417 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 417 (1096)
|...-.++.|+|.| ++|-| ....|.|-|..+-+.+.. +.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAyg-shslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYG-SHSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEe-cCceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 44457889999999 67776 456888889887776643 6669999999999873
Q ss_pred -C------CEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC---CCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 418 -G------NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 418 -~------~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d---~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
+ -.||++...|.|.+||...+..+. .+..|..++..++|-+. .+. +|+.-....++.+|+ .+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 256777778999999999887665 47789999999999763 333 677777788999999 99999
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC------CeeeEEe-CCCC--------------------
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM------GSRVDYD-APGH-------------------- 539 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~-~~~~-------------------- 539 (1096)
............|+.+.|-.. ..+..-+..|.+.+-+.-.. ...+.+. .|..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 888876667777788776533 44555555666665543211 1111111 1100
Q ss_pred -----cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC--CEEEEEEcCCeEEEE
Q 001343 540 -----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFW 612 (1096)
Q Consensus 540 -----~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~iw 612 (1096)
....++|+|.-+.++.... ...+.++|++-..++....-..+ .+..+.+-|++ ..+++.-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 1223567787665555554 78899999998888877766555 44456666655 578999999999999
Q ss_pred eCCCC----------------eEEEEeecCCCCCCccEEEEeCC-CCEEEEEECCCcEEEEEcCCCccccccccCCCcc-
Q 001343 613 DMDNV----------------NILTSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFE- 674 (1096)
Q Consensus 613 d~~~~----------------~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~- 674 (1096)
-.+.. +....+...... .+......|. ...++.--.+|.+.+|.+.++........+....
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 87652 222222211111 1222333443 4555666678889999998762111111100000
Q ss_pred ---------cccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCC--CCCCccccCCCCCccceee
Q 001343 675 ---------ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS--MDKPRTVDDVTDKPKPWQL 743 (1096)
Q Consensus 675 ---------~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~--d~~~l~s~~~dg~i~iw~~ 743 (1096)
..-+...-+.++.||..- .+... .+..++............-.+ --.++|.|...|+|.++|+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~-----sGs~~-~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv 454 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHS-----SGSTC-VRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV 454 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCC-----CCcee-eecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence 000000111222222110 01000 111111111111000001111 1246788999999999999
Q ss_pred eeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccc
Q 001343 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (1096)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~ 823 (1096)
.. +.... .+.- |...|.++.|..... +++.+.+.... ........+.+-|+.+|.....
T Consensus 455 st----~~v~~-~fsv---ht~~VkgleW~g~ss-lvSfsys~~n~------------~sg~vrN~l~vtdLrtGlsk~f 513 (1062)
T KOG1912|consen 455 ST----NAVAA-SFSV---HTSLVKGLEWLGNSS-LVSFSYSHVNS------------ASGGVRNDLVVTDLRTGLSKRF 513 (1062)
T ss_pred cc----hhhhh-hhcc---cccceeeeeecccee-EEEeeeccccc------------cccceeeeEEEEEccccccccc
Confidence 84 32222 2222 899999999988876 55554431100 0001111344556666664442
Q ss_pred c-ccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceE
Q 001343 824 D-VAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV 864 (1096)
Q Consensus 824 ~-~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~ 864 (1096)
. +++ ....+|+.+..|..|+||+... +.-+.+||+++..+
T Consensus 514 R~l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~ 555 (1062)
T KOG1912|consen 514 RGLQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRM 555 (1062)
T ss_pred ccCCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchH
Confidence 2 222 3577999999999999999999 57799999976543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=170.10 Aligned_cols=247 Identities=20% Similarity=0.244 Sum_probs=192.3
Q ss_pred cccCCCCEEEEEEcCCC--CEEEEEECCCeEEEEEccCC-------------CccccceeecccccCEEEEEEecCCCcE
Q 001343 402 FKDVPISVSRVAWSPDG--NYVGVAFTKHLIQLYSYAGS-------------NDLRQHSQIDAHVGAVNDLAFAYPNKLL 466 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~--~~l~s~~~dg~i~vwd~~~~-------------~~~~~~~~l~~h~~~v~~l~~s~d~~~~ 466 (1096)
...|.+.|+-+.-++-+ .+.|+-+..|.|.||++... ...+.+.++.+|.+.=+.++|||-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 45678888888888754 45556677899999997521 223455678899999999999994443
Q ss_pred EEEEEeCCCcEEEEE-cCCceE---EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe--eeEEeCCCCc
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHW 540 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~ 540 (1096)
.|+||.--+.|++|. .+|.-. ..|.+|+..|-.++|+|..+ ..|++|+.||+|+|||++.+.. ......|+..
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 589998889999999 666543 44678999999999999876 5899999999999999998733 2344788889
Q ss_pred EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC---CeeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCC
Q 001343 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 541 i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 616 (1096)
|+-+.|+....+|++|+. +|.+.|||++. ++++..|+.|.. +|+++.|+|.. ..|++++.|.+|.+||+..
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999888999886 99999999875 678889999988 99999999965 5677888999999999853
Q ss_pred Ce----------------EEEEeecCCCCCCccEEEEeCCC-CEEEEEECCCcEEEE
Q 001343 617 VN----------------ILTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKIL 656 (1096)
Q Consensus 617 ~~----------------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 656 (1096)
.. +.+.+-.|.+...+..+.|++.- .++++.+.|| +.||
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 21 11223334445578899999843 5777777776 4444
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=177.10 Aligned_cols=259 Identities=12% Similarity=0.160 Sum_probs=187.7
Q ss_pred ceEEEEEcCC-------CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCc------cccccccccCCCCEEEE
Q 001343 346 TVISMDFHPS-------HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL------PFQASIFKDVPISVSRV 412 (1096)
Q Consensus 346 ~V~~v~fsp~-------g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~V~~l 412 (1096)
.-.|++|... |+ |+|.|+.|..|.|||+.=...+. ....+..... ..+.....+|+..|.++
T Consensus 175 fPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~L 249 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLAL 249 (463)
T ss_pred cchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHH
Confidence 3466666543 45 79999999999999986322110 0000000000 00112345799999999
Q ss_pred EEcCC-CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE-EE
Q 001343 413 AWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-FN 489 (1096)
Q Consensus 413 ~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~-~~ 489 (1096)
+|+.+ .+.||+||.|.+|++||+.+|++.. ++..|.+.|.++.|+|.... +|++|+.|++|.+.| ...... ..
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred HhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCce
Confidence 99986 5588999999999999999999877 56789999999999998776 899999999999999 533222 23
Q ss_pred eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcCCCCE-EEEEeeccCCCCeEE
Q 001343 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGDSFLV 567 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~-l~~~~~~~~~~~~i~ 567 (1096)
++ ..+.|-.+.|.+... ..++++..||+++-+|++.. +++.++..|..+|.++++++.-.. +++++. ++.++
T Consensus 326 wk-~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~----d~~Vk 399 (463)
T KOG0270|consen 326 WK-FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST----DKVVK 399 (463)
T ss_pred EE-eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc----cceEE
Confidence 33 466788999987643 57888899999999999976 778899999999999999987655 455554 99999
Q ss_pred EEeCCCCeee--EEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCCeEE
Q 001343 568 EWNESEGTIK--RTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 568 iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
+|++..-... ..-.-.-+ ...|.++.|+-. .++.|+..+.++|||+.+...+
T Consensus 400 lw~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEeecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9998654332 11111111 355566667654 4666778888999999876544
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-17 Score=168.84 Aligned_cols=229 Identities=14% Similarity=0.108 Sum_probs=169.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEE-ec-----CCCcEEEEEEeCCCcE
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-AY-----PNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~-s~-----d~~~~~l~s~s~d~~i 477 (1096)
.|...|.|+.|+.+...+.+++.+..++-||+.+... .. +.-....|....+ -+ .+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 4777788999999888887776655555555544321 11 1111111111111 00 1111168889999999
Q ss_pred EEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
.+.+..++.......|.+.+.+-.|++ +|.-|+++++||.|++|. +++.....+......|.|++|.|+.+.++.|.
T Consensus 88 ~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 88 VILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred EEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 999999999999999999999999977 667799999999999997 33444444455566899999999999888775
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1096)
.+.+.|=.+.....+-..+.|.+ .|.++.|++..+.+++|++|-..++||-. |..+..-..+.. +|++++|
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~ 235 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVAF 235 (737)
T ss_pred -----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeeee
Confidence 66787777777777777888887 89999999999999999999999999974 555555555555 8999999
Q ss_pred eCCCCEEEEEEC
Q 001343 638 SKEGNLLAVTTA 649 (1096)
Q Consensus 638 s~~~~~l~~~~~ 649 (1096)
+|+ ..++.++.
T Consensus 236 npd-~~~~v~S~ 246 (737)
T KOG1524|consen 236 NPE-KDYLLWSY 246 (737)
T ss_pred ccc-cceeeeee
Confidence 999 55555543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=167.54 Aligned_cols=280 Identities=16% Similarity=0.217 Sum_probs=199.6
Q ss_pred cccccCCCCEEEEEEcC-----CCCEEEEEECCCeEEEEEccCCCccccceee--cccccCEEEEEEecCCC--cEEEEE
Q 001343 400 SIFKDVPISVSRVAWSP-----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI--DAHVGAVNDLAFAYPNK--LLCVVT 470 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~sp-----d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l--~~h~~~v~~l~~s~d~~--~~~l~s 470 (1096)
++..+|+.+|..++|.+ .-..+|+++. ..+.+|+......++.+... ..|......++|+-|.. ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45678999999999985 2346666665 48888987754433322222 24788889999986532 227889
Q ss_pred EeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE---eCCCCcEEEEEE
Q 001343 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLY 546 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~ 546 (1096)
++.-|.|+|.| .++++...+.+|...|+.+.++|.. .+++++++.|..||+|++++..++..+ .+|...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999 9999999999999999999999874 579999999999999999999998876 457779999999
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE----------------------------cCcCccceEEEEEeCCCC
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY----------------------------AGFRKKSNGVVQFDTTQN 598 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~----------------------------~~~~~~~i~~~~~~~~~~ 598 (1096)
+.+|.++++++. |..|++|++...+....+ .-|.. .|.|+.| -|+
T Consensus 190 ~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn-yVDCvrw--~gd 262 (385)
T KOG1034|consen 190 SLDGDRIASCGM----DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN-YVDCVRW--FGD 262 (385)
T ss_pred cCCCCeeeccCC----cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc-hHHHHHH--Hhh
Confidence 999999999998 999999999843211110 01111 2333333 257
Q ss_pred EEEEEEcCCeEEEEeC-CCCeE-------------EEEeecCCCCCCccEE--EEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001343 599 HFLAVGEDSQIKFWDM-DNVNI-------------LTSTDAEGGLPNLPRL--RFSKEGNLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 599 ~l~~~~~dg~i~iwd~-~~~~~-------------~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
++++-+-++.|..|.. +-++. +..+..... .++-+ +|.|-+++||.|...|.|.+||+.+..
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c--~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC--DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc--ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 8899888899999987 22222 222222222 34444 556778999999999999999998774
Q ss_pred cccccccCCCcccccCcceeEEeecCCCeE
Q 001343 663 RSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
.. ....+........|+..+|+.||..+
T Consensus 341 p~--~~ttl~~s~~~~tVRQ~sfS~dgs~l 368 (385)
T KOG1034|consen 341 PP--KCTTLTHSKSGSTVRQTSFSRDGSIL 368 (385)
T ss_pred Cc--cCceEEeccccceeeeeeecccCcEE
Confidence 32 11222222233446666776666655
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-18 Score=163.63 Aligned_cols=285 Identities=15% Similarity=0.208 Sum_probs=209.2
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccc--ccccccCCCCEEEEEEc-------CC
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQ--ASIFKDVPISVSRVAWS-------PD 417 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~l~~s-------pd 417 (1096)
...+.|||||.. +.+-+.|..+.+|++...-.-..... ...+. ..+-......|...+|= |+
T Consensus 52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~--------~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~ 122 (406)
T KOG2919|consen 52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADG--------PLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS 122 (406)
T ss_pred hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCC--------ccccccceeEEeccCCEEEEEEeeeccccCCCc
Confidence 456899999994 66778999999999853211100000 00000 00011124456766664 67
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccC---EEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceE--EEe
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGA---VNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKL--FNF 490 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~---v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~--~~~ 490 (1096)
..++|+.+.+.-|++||.-+|+...... ...|... ..+++|+|||. .|++ +....|+++| ..|+.. ..-
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred cceeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhh
Confidence 8899999999999999999998655432 2235443 46899999999 6665 5588999999 455432 111
Q ss_pred -----eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 491 -----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 491 -----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
.+..+-|.+++|+|. +...++.|+.-.++-|+.-........+-+|.+.|+.+.|.++|+.|++|.. .+..
T Consensus 199 ~~~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dk 274 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDK 274 (406)
T ss_pred hhcccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCe
Confidence 234667889999987 4468999999999999998888999999999999999999999999999876 3778
Q ss_pred EEEEeCCC-CeeeEEEcCcCccceEE--EEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecCCCCCCccEEEEeCCC
Q 001343 566 LVEWNESE-GTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 566 i~iwd~~~-~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
|..||++. +.++..+..|....-.. ....|.+++|++|+.||.|++||+++ +..+..+..+.. .++.++++|--
T Consensus 275 Il~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~m 352 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIM 352 (406)
T ss_pred EEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCccc
Confidence 99999985 44556666655422222 44568899999999999999999998 776766666655 89999999998
Q ss_pred CEEEEEECC
Q 001343 642 NLLAVTTAD 650 (1096)
Q Consensus 642 ~~l~~~~~d 650 (1096)
.++|+++..
T Consensus 353 pilatssGq 361 (406)
T KOG2919|consen 353 PILATSSGQ 361 (406)
T ss_pred ceeeeccCc
Confidence 888888754
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-15 Score=176.93 Aligned_cols=370 Identities=21% Similarity=0.379 Sum_probs=275.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCC-ccccceeecccc-cCEEEEEE-ecCCCcEEEEE-EeCCCcE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHV-GAVNDLAF-AYPNKLLCVVT-CGDDKLI 477 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~l~~h~-~~v~~l~~-s~d~~~~~l~s-~s~d~~i 477 (1096)
+..|...|.++.+.+.+..++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ .+++.. .++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 55689999999999999999999999999999998875 333 344433 37777777 777763 3444 3449999
Q ss_pred EEEE-cC-CceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCC-EE
Q 001343 478 KVWE-LS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RL 553 (1096)
Q Consensus 478 ~iwd-~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l 553 (1096)
.+|| .. ......+..|...|..++|++ ++..+++++. |+.+++|+.........+..|...+.+++|+|++. .+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999 44 688889999999999999977 4457888875 99999999998778888888899999999999998 44
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeE-EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE-EEEeecCCCCCC
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPN 631 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 631 (1096)
++++. ++.+++||...+.... .+.+|.. .. ...|++++..+++++.|+.+++|+...... ...+..+ ...
T Consensus 215 ~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 286 (466)
T COG2319 215 ASGSS----DGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSS 286 (466)
T ss_pred EEecC----CCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--Ccc
Confidence 44354 8999999998888888 6888776 33 338999998899999999999999987664 4444333 448
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~ 711 (1096)
+.++.|+|++..+++++.|+.+.+|+..+.... ....
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~------------------------------------------ 323 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL-SSLT------------------------------------------ 323 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE-EEee------------------------------------------
Confidence 999999998888888998988999977554110 0000
Q ss_pred CCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEe-ecCCeEEE
Q 001343 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL-GSNGVQKL 790 (1096)
Q Consensus 712 ~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~-~~dg~v~v 790 (1096)
... |...+..+.|.+++..++.+ ..++.+.+
T Consensus 324 ---------------------------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 355 (466)
T COG2319 324 ---------------------------------------------LKG---HEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355 (466)
T ss_pred ---------------------------------------------ecc---cCCceEEEEECCCCCEEEEeecCCCcEEe
Confidence 000 44456667773232445555 45778888
Q ss_pred eeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEE-ec-CCeEEEEEcccceEEEee
Q 001343 791 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS-AT-GGKISLFNMMTFKVMTTF 868 (1096)
Q Consensus 791 w~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~-~~-dg~v~iwd~~~~~~~~~~ 868 (1096)
|++.... ... ... ....+..+.+++ ...++. +. ++.+.+|+..........
T Consensus 356 ~~~~~~~----------------------~~~-~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 356 WDLRTGK----------------------PLK-TLE---GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred eecCCCc----------------------eeE-Eec---CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec
Confidence 8764311 000 011 112277888888 533333 34 689999999888887776
Q ss_pred cCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeecc
Q 001343 869 MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (1096)
Q Consensus 869 ~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~ 904 (1096)
..+...+....+++ ++..+++++.++.+++|++..
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 409 DGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCCCCcEEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 65547888999999 899999999999999999876
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-17 Score=169.67 Aligned_cols=269 Identities=16% Similarity=0.213 Sum_probs=191.7
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE--cCCCC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW--SPDGN 419 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--spd~~ 419 (1096)
.|..-|.|+.|+.+.. ++.++ .|..+.+|.-.+...... .+ +..... + -..| +....- -....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~--~~---~p~df~--p---t~~h---~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEV--AK---LPDDFV--P---TDMH---LGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhh--hh---CCcccC--C---cccc---ccccccCCCCCcc
Confidence 4777789999999988 45554 566666665443332211 00 000000 0 0001 000000 01245
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEE
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~ 499 (1096)
.++.++.||.+.+.+-.. +..+ .+.+|.+.|.+-.|+|||. -|+++++||.|++|..+|..-.++.....+|.|
T Consensus 77 ~~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRC 150 (737)
T ss_pred eEEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEeccchHHHHHhhcCceeEE
Confidence 788899999999887443 3333 4778999999999999999 799999999999999999887777778889999
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
++|.|..+ ..+++.+ +.+.|=-+.....+.....|.+-|.++.|++..+.+++++. |-..++||.. |..+..
T Consensus 151 ~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 151 ARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFT 222 (737)
T ss_pred EEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccccc
Confidence 99988653 3444443 55666666777788899999999999999999999999997 9999999965 555555
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEE
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1096)
-..|.- +|++++|.|+ ..++.++. ++++ +... ..+.|..++|++||..+++|+..|.+.+
T Consensus 223 S~~~ey-~ITSva~npd-~~~~v~S~-nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 223 SAAEEY-AITSVAFNPE-KDYLLWSY-NTAR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CChhcc-ceeeeeeccc-cceeeeee-eeee------------ecCC-CccceEEEEEcCCCceeeccccCceEEE
Confidence 555555 8999999999 66666654 3444 2111 2347899999999999999999888765
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=165.48 Aligned_cols=234 Identities=14% Similarity=0.220 Sum_probs=184.7
Q ss_pred cccccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEccCCCccc----cceeecccccCEEEEEEecCCCcEEEEEEeCC
Q 001343 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLR----QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d 474 (1096)
..+.||+++|..++|+| +...||+|+.|.+|.||++-.+...+ ....|.||...|--++|+|...+ +|++++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 35889999999999999 67889999999999999987654332 33468899999999999998877 89999999
Q ss_pred CcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC-cEEEEEEcCCCCE
Q 001343 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSR 552 (1096)
Q Consensus 475 ~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~ 552 (1096)
.+|.+|| .+|+.+.++. |...|++++|+. ||.+|++.+.|..|||||.++++.+..-..|.+ .-..+.|-.+|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 9999999 9999988888 999999999976 778999999999999999999998887766655 556677778888
Q ss_pred EEEEeeccCCCCeEEEEeCCCCee---eEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeE-EEEeecCC
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEG 627 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~ 627 (1096)
+++.+.++-.+.++-+||..+-+. ...+.... .|.--.|.++.+.++.+| .|+.|+-|.+....+ +..+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~ 307 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS 307 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc
Confidence 777777777799999999775432 33343333 455556788888776655 899999999987653 33333322
Q ss_pred CCCCccEEEEeCC
Q 001343 628 GLPNLPRLRFSKE 640 (1096)
Q Consensus 628 ~~~~v~~~~~s~~ 640 (1096)
...+-..+.|-|.
T Consensus 308 S~epQRG~g~mPK 320 (472)
T KOG0303|consen 308 SKEPQRGMGFMPK 320 (472)
T ss_pred cCCcccccccccc
Confidence 2334466677664
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-17 Score=164.92 Aligned_cols=307 Identities=12% Similarity=0.186 Sum_probs=206.9
Q ss_pred CccccCCCCCccceeeeeeecCCc---eE-EEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCc
Q 001343 728 PRTVDDVTDKPKPWQLAEIVDSGQ---CR-LVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (1096)
Q Consensus 728 ~l~s~~~dg~i~iw~~~~~~~~~~---~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~ 803 (1096)
.+++|+.|..|++|.+......+. .. .-.+.. |...|+.+.|+|+|..+++++.+|.+.+|........+...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~---H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~ 104 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSR---HTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT 104 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccC---CcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc
Confidence 678999999999999986544442 11 123444 99999999999999988888889999999875311100000
Q ss_pred eeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEec
Q 001343 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1096)
Q Consensus 804 ~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 882 (1096)
-+... ...-.+...+.| |...|..++|+||+.++++++ |..+++||+..|.+...+..|...+..++|.|
T Consensus 105 -e~~~~------ke~w~v~k~lr~--h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp 175 (434)
T KOG1009|consen 105 -EADLN------KEKWVVKKVLRG--HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP 175 (434)
T ss_pred -hhhhC------ccceEEEEEecc--cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch
Confidence 00000 001122234555 999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCcEEEEeeCCCeEEEEeecccee--e----eeeccccccccceeeecCCCCCC-CCCceEEEecCCcEEEE-E----e
Q 001343 883 QDNNIIAIGTEDSTIHIYNVRVDEL--C----VWSIDTWEKRKSVTIHIPAGKTP-TGDTRVQFNADQVRMLV-V----H 950 (1096)
Q Consensus 883 ~d~~~l~s~~~dg~i~iw~~~~~~~--~----~w~~~~~~~~~~~~~~~~~~~~~-~~v~~v~fs~dg~~l~~-~----~ 950 (1096)
-++++++-+.|...+.+.+....+ + +-.........++..+.+...+. +-...++|+|||.+|++ + .
T Consensus 176 -l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~ 254 (434)
T KOG1009|consen 176 -LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKV 254 (434)
T ss_pred -hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeee
Confidence 899999999998777777765541 0 00001111111122222222211 34567899999999998 2 1
Q ss_pred cceE-----EEEEccccee-ccccccCCCCCCCceEEEEee------------------CCcEEEEEecCCcEEEEecCC
Q 001343 951 ETQL-----AIYDASKMER-IRQWTPQDALSAPISCAVYSC------------------NSQLVFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 951 d~~i-----~iwd~~~~~~-~~~~~~~~~~~~~i~~l~~s~------------------dg~~la~~~~dg~i~vwd~~~ 1006 (1096)
.+.+ ++|+-...+. ...+... ..++..+.|+| -+-.+|+++.| .|+|||.++
T Consensus 255 g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~ 330 (434)
T KOG1009|consen 255 GGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQT 330 (434)
T ss_pred CCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEecccc
Confidence 3333 4444332221 1222221 45566666665 12235555554 899999998
Q ss_pred CceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCC
Q 001343 1007 LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
...++... ++ |-..++ +++|++ ||..|+..|.||..-+-.++..|
T Consensus 331 ~~P~~~v~-------ni--hy~~iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 331 LEPLAVVD-------NI--HYSAIT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ccceEEEe-------ee--eeeeec--ceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 88666544 23 677888 699999 99999999999987776665554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-17 Score=158.79 Aligned_cols=284 Identities=10% Similarity=0.121 Sum_probs=194.0
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe------------EEEEeecCCCCCCccEEEEe-------CCCCEEEEE
Q 001343 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------------ILTSTDAEGGLPNLPRLRFS-------KEGNLLAVT 647 (1096)
Q Consensus 587 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s-------~~~~~l~~~ 647 (1096)
....+.|+|||..|++-+.|..+.+|++...- ....+.... ...|...+|- |+..++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~e-g~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQE-GETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEecc-CCEEEEEEeeeccccCCCccceeeec
Confidence 34458899999999999999999999985311 111111111 1256777775 677899999
Q ss_pred ECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCC
Q 001343 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDK 727 (1096)
Q Consensus 648 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 727 (1096)
+.+.-|++||..+| +....+........-...-++.|+|||..+.++..
T Consensus 130 sr~~PIh~wdaftG-~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk------------------------------ 178 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTG-KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK------------------------------ 178 (406)
T ss_pred cccCceeeeecccc-ccccchhhhhhHHhhhhheeEEecCCCCeEeeccc------------------------------
Confidence 99999999999998 44444444433222334557888888888754444
Q ss_pred CccccCCCCCccceeeeeeecCCceEEEE--cCCCCCCcccEEEEEEecCCc-eEEEeecCCeEEEeeccCCccCCCCce
Q 001343 728 PRTVDDVTDKPKPWQLAEIVDSGQCRLVT--MPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKA 804 (1096)
Q Consensus 728 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~g~~ 804 (1096)
..|+++++.. .+..|.... ..+..+..+-|.+++|+|... .++.++....+-||.-.
T Consensus 179 --------rcirvFdt~R--pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~---------- 238 (406)
T KOG2919|consen 179 --------RCIRVFDTSR--PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD---------- 238 (406)
T ss_pred --------ceEEEeeccC--CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC----------
Confidence 7788888742 122222211 111122466789999999665 56666666677666532
Q ss_pred eeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEccc-ceEEEeecCCCC-CeeEEE-
Q 001343 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMTTFMSPPP-ASTFLA- 879 (1096)
Q Consensus 805 ~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~-~~~~~~~~~h~~-~i~~l~- 879 (1096)
.+..+. .+-| |.+.|+.++|.+||+.|.+|. +..|..||++. +..+-.+..|.+ .-..|.
T Consensus 239 ------------~~~pl~-llgg--h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~F 303 (406)
T KOG2919|consen 239 ------------GRRPLQ-LLGG--HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILF 303 (406)
T ss_pred ------------CCCcee-eecc--cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEE
Confidence 223333 3445 999999999999999999999 68899999965 445666777765 333444
Q ss_pred -EecCCCcEEEEeeCCCeEEEEeecc-ceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceE
Q 001343 880 -FHPQDNNIIAIGTEDSTIHIYNVRV-DELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 954 (1096)
Q Consensus 880 -~s~~d~~~l~s~~~dg~i~iw~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i 954 (1096)
..| ++++|++|+.||.|++||++. +. .+.....+.. .+..|+++|-=..+|+++...+
T Consensus 304 Dld~-~~~~LasG~tdG~V~vwdlk~~gn---------------~~sv~~~~sd-~vNgvslnP~mpilatssGqr~ 363 (406)
T KOG2919|consen 304 DLDP-KGEILASGDTDGSVRVWDLKDLGN---------------EVSVTGNYSD-TVNGVSLNPIMPILATSSGQRI 363 (406)
T ss_pred ecCC-CCceeeccCCCccEEEEecCCCCC---------------cccccccccc-cccceecCcccceeeeccCcee
Confidence 467 899999999999999999987 33 3344445554 8899999999777777543333
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-18 Score=180.38 Aligned_cols=266 Identities=15% Similarity=0.239 Sum_probs=194.0
Q ss_pred eec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCC
Q 001343 340 SLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1096)
Q Consensus 340 ~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 418 (1096)
++. |.+.|+.++|+|... .|++++.||+|.+|+++....-....+ .+.-.|.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEecCCc
Confidence 555 999999999999998 699999999999999944211111111 1223588999999999999999
Q ss_pred CEEEEEECCCeEEEEEccCCCc-------cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe
Q 001343 419 NYVGVAFTKHLIQLYSYAGSND-------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~ 490 (1096)
..+.+|+.||+|+.|++..... ......+.||.+.|+.+++++... .|++|+.||+++.|+ ....+ .++
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 9999999999999996642211 111125789999999999999888 799999999999999 44443 344
Q ss_pred eCC--CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-------CCcEEEEEEcCCCCEEEEEeeccC
Q 001343 491 EGH--EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSKD 561 (1096)
Q Consensus 491 ~~~--~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~~~~l~~~~~~~~ 561 (1096)
... .+.-.++.+.... -...++...-+.-.++++........+... ...+.-+..+|.+...+++..
T Consensus 434 ~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--- 509 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--- 509 (577)
T ss_pred CCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence 322 2233455543221 122333333333344444444444333221 125777888899988888886
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
++.|+++|..+++++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....+
T Consensus 510 -d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 -DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred -CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999999999999999998887 8999999999999999999999999999877666554433
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-17 Score=164.03 Aligned_cols=294 Identities=12% Similarity=0.141 Sum_probs=211.9
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeec-ccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
++|.+-|.++.||.+++ +||+|+.|..+++|++...-..+. +++.+ .-..|.+.|.|++|....+
T Consensus 53 ~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEFDLENR 118 (609)
T ss_pred hhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEEccCCe
Confidence 56999999999999998 799999999999999864322211 11111 1233568999999999999
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc-eE--EEeeCCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KL--FNFEGHEA 495 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~-~~--~~~~~~~~ 495 (1096)
+|.+|+.+++|..-|+++.+.+.... -....+.|+.+..+|-.+ .|++.+.+|.|.+|| .... .+ ..+.....
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred eEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 99999999999999999977665211 122345999999999988 899999999999999 4332 22 23333455
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-------EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-------DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
....+.|+|.. ..+|++.+..+-+-+||.+...... .+......-.++.|+|+|+.+++.-. ...-.+
T Consensus 196 ~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~~ 270 (609)
T KOG4227|consen 196 NFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPLY 270 (609)
T ss_pred cceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCEE
Confidence 67788898864 4788999999999999988654432 11122223467889999999988754 445566
Q ss_pred EeCCCCee-eEEEcCcCc-----cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC-----------------------eE
Q 001343 569 WNESEGTI-KRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-----------------------NI 619 (1096)
Q Consensus 569 wd~~~~~~-~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~ 619 (1096)
||+-+.++ +..+..... ..+.+++|..+ ..+++|+.+-.|++|.+... ..
T Consensus 271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred eeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 78776443 333331111 13455677655 44899999999999987531 12
Q ss_pred EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+..+.+|.. -++.+.|+|...+|++.+-.+.++||...
T Consensus 350 ~~VLrGHRS--v~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 350 LTVLRGHRS--VPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eEEEecccc--cccceeecCCcceEeccchhhheeccccc
Confidence 334455544 78999999999999999999999999753
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-16 Score=165.77 Aligned_cols=493 Identities=14% Similarity=0.170 Sum_probs=295.9
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC----------CCcEEEEEEeCCCc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP----------NKLLCVVTCGDDKL 476 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d----------~~~~~l~s~s~d~~ 476 (1096)
..-.++.|+|.| .||.|+. ..|.|-|..+-+.+. .+.-|...|+.+.|.|. ...+.|+++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346788999877 6676765 478888988766665 67789999999999863 13357888888999
Q ss_pred EEEEE-cCCceEEEeeCCCCCeEEEEeeecCCC--cEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC-CCE
Q 001343 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI--QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-GSR 552 (1096)
Q Consensus 477 i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-~~~ 552 (1096)
|.+|| ..+..+..+..|..++..++|.+..+. ..|++-....++.+|+..+++....+........++.+.|- .+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 99999 888888899999999999999876543 46777788899999999999999988887777788888883 344
Q ss_pred EEEEeeccCCCCeEEEEeCC-------CCeeeEEEcCcCc-----------cce-------------EEEEEeCCCCEEE
Q 001343 553 LFSCGTSKDGDSFLVEWNES-------EGTIKRTYAGFRK-----------KSN-------------GVVQFDTTQNHFL 601 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~-----------~~i-------------~~~~~~~~~~~l~ 601 (1096)
+...+. .|.+.+-+.- .++..+.-..|.+ ... ..++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 444333 5555554432 1222222222111 000 0146788777777
Q ss_pred EEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC--CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCc
Q 001343 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1096)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1096)
.......+.++|++-...+.......+ .+.-+.+-|++ ..|++.-.||.+.+|-........+.-..+-.......
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q 324 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQ 324 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccc
Confidence 777788999999999999988887766 55666777755 67999999999999976543111111000000000111
Q ss_pred ceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCC-CCCccccCCCCCccceeeeeeecCCceEEEEcC
Q 001343 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM-DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1096)
Q Consensus 680 v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 758 (1096)
+..+.. ..... .......|. ...++.--.+|...+|.+.. +........
T Consensus 325 ~~~vr~--m~~~r------------------------p~~~~~cPs~~sa~avl~s~g~~~~w~l~~----~ri~~~~~s 374 (1062)
T KOG1912|consen 325 VHVVRP--MEEFR------------------------PVIGASCPSTPSALAVLYSSGDSTFWQLSN----GRIHLDYRS 374 (1062)
T ss_pred eEEEee--chhcc------------------------cceeecCCCChhhhhhhhhcchhHHHhhhc----CCcCccccc
Confidence 111111 10000 000111222 22333334457788888863 111110000
Q ss_pred CCCCCcccEEEEEEecCC-----ceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCC
Q 001343 759 ESTDTSSKVVRLLYTNSA-----VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEA 833 (1096)
Q Consensus 759 ~~~~~~~~i~~l~~s~~~-----~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~ 833 (1096)
+ ...-+..+.|.... ..++.-+.|| ..+.|...... ++...-......+| +.
T Consensus 375 ~---~iel~~pf~f~~~~~~v~k~~l~~LS~dg-----------~h~sGs~~~~~-----~p~p~~t~~~~~p~----~n 431 (1062)
T KOG1912|consen 375 S---SIELVLPFDFNLSTKLVGKTSLISLSDDG-----------SHSSGSTCVRM-----RPMPELTKVENDPG----GN 431 (1062)
T ss_pred c---cccccccccccCceeehhhccccchhhcC-----------CCCCCceeeec-----ccCcccceeecCCC----CC
Confidence 0 00111111111110 1122222222 11111111000 00000000000000 00
Q ss_pred eeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEe---------eCCCeEEEEeec
Q 001343 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG---------TEDSTIHIYNVR 903 (1096)
Q Consensus 834 v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~---------~~dg~i~iw~~~ 903 (1096)
...+. --++|.|. .|+|.++|+.++...+.+..|.+.|.++.|.. ...++-.+ +.-+.+.+-|+.
T Consensus 432 ~~~~~----~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN~l~vtdLr 506 (1062)
T KOG1912|consen 432 TPAGT----VPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRNDLVVTDLR 506 (1062)
T ss_pred cccee----eeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccccceeeeEEEEEcc
Confidence 00011 03677887 59999999999999999999999999999976 44433222 223456777888
Q ss_pred cceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEE
Q 001343 904 VDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAV 982 (1096)
Q Consensus 904 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~ 982 (1096)
+|. .+..+.+.+...++|..+..|..|++|+. -.+.-+.+||+++..+++.+-.. ---|+.+.
T Consensus 507 tGl-------------sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a---~P~it~le 570 (1062)
T KOG1912|consen 507 TGL-------------SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLA---LPLITVLE 570 (1062)
T ss_pred ccc-------------ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhc---CCcEEEEe
Confidence 775 22333333333369999999999999999 78999999999988877766432 23388889
Q ss_pred Ee
Q 001343 983 YS 984 (1096)
Q Consensus 983 ~s 984 (1096)
|+
T Consensus 571 Ws 572 (1062)
T KOG1912|consen 571 WS 572 (1062)
T ss_pred ec
Confidence 98
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-17 Score=159.58 Aligned_cols=382 Identities=12% Similarity=0.126 Sum_probs=243.0
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE-EcCCeEEEEeCCCCeEEE
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 621 (1096)
-.+|||+|++++++. +-.+.|-|..+-+..+.|..-. .|.-+.|..+..+++++ ..++.|.+|++...+...
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 367999999999997 5588888888877766665543 35558888888777765 578899999999888887
Q ss_pred EeecCCCCCCccEEEEeCCCCE-EEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCc
Q 001343 622 STDAEGGLPNLPRLRFSKEGNL-LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~ 700 (1096)
.+..... .+..+.|||||+. |.+...|-.|.+|.+.+..-..-... ...+..++|+|||++.+.....+.
T Consensus 86 kIdeg~a--gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p-------K~~~kg~~f~~dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 86 KIDEGQA--GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP-------KTNVKGYAFHPDGQFCAILSRRDC 156 (447)
T ss_pred EeccCCC--cceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc-------ccCceeEEECCCCceeeeeecccH
Confidence 7765544 8999999999954 55566789999999987632222221 123457899999998744433221
Q ss_pred eeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEE
Q 001343 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1096)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 780 (1096)
.. + +.- -.-+-|.+- +.+.. ..-..+.+.|+|||..++
T Consensus 157 kd------------y--------------v~i---~~c~~W~ll-----~~f~~--------dT~DltgieWsPdg~~la 194 (447)
T KOG4497|consen 157 KD------------Y--------------VQI---SSCKAWILL-----KEFKL--------DTIDLTGIEWSPDGNWLA 194 (447)
T ss_pred HH------------H--------------HHH---HhhHHHHHH-----HhcCC--------CcccccCceECCCCcEEE
Confidence 11 0 000 001123322 11111 334567799999998655
Q ss_pred Eeec--CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEE
Q 001343 781 ALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (1096)
Q Consensus 781 ~~~~--dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iw 857 (1096)
+-.+ +-.|..|. -.-.+..++|+|.+++||+|+ |+.++|.
T Consensus 195 Vwd~~Leykv~aYe-------------------------------------~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 195 VWDNVLEYKVYAYE-------------------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred Eecchhhheeeeee-------------------------------------eccceeEEEeccccceEEeeccchhhhhh
Confidence 4332 11111111 234678899999999999999 8999987
Q ss_pred EcccceEEEeecCCCCCe--------------------eEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeecccccc
Q 001343 858 NMMTFKVMTTFMSPPPAS--------------------TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEK 917 (1096)
Q Consensus 858 d~~~~~~~~~~~~h~~~i--------------------~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~ 917 (1096)
+--+.+....+ .|...+ .++.|.| .|-...+|..+... +......
T Consensus 238 nh~tWk~f~ef-lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p----------~~~~a~~~~~se~~---YE~~~~p- 302 (447)
T KOG4497|consen 238 NHFTWKPFGEF-LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP----------TDLEAHIWEESETI---YEQQMTP- 302 (447)
T ss_pred ceeeeeehhhh-ccchhccCchhhhhhhhhcchhhhcccccccCC----------CccccCccccchhh---hhhhhcc-
Confidence 76565554443 222111 1344444 12223344333211 0000000
Q ss_pred ccceeee---cCCCCCCCCCceEEEecCCcEEEEEe---cceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEE
Q 001343 918 RKSVTIH---IPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 991 (1096)
Q Consensus 918 ~~~~~~~---~~~~~~~~~v~~v~fs~dg~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 991 (1096)
.....++ ...... ..+.-++||+|..++++-. -..+.+||++..+.-..+.. ..+|.+..|.|....|+
T Consensus 303 v~~~~lkp~tD~pnPk-~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ----k~piraf~WdP~~prL~ 377 (447)
T KOG4497|consen 303 VKVHKLKPPTDFPNPK-CGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ----KHPIRAFEWDPGRPRLV 377 (447)
T ss_pred eeeecccCCCCCCCcc-cccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh----ccceeEEEeCCCCceEE
Confidence 0001111 111111 3788899999999999943 45799999998887666654 56799999999998888
Q ss_pred EEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCc
Q 001343 992 ATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGS 1053 (1096)
Q Consensus 992 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~ 1053 (1096)
++.....+++|........+.-. -.-.|. .+.|.- +|..++..+.|..
T Consensus 378 vctg~srLY~W~psg~~~V~vP~-----------~GF~i~--~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 378 VCTGKSRLYFWAPSGPRVVGVPK-----------KGFNIQ--KLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred EEcCCceEEEEcCCCceEEecCC-----------CCceee--eEEecC-CCcEEEEEcCCce
Confidence 88888889999877644443322 123566 489987 8999999888864
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=194.71 Aligned_cols=261 Identities=12% Similarity=0.144 Sum_probs=202.7
Q ss_pred eEEeecCCCceEEEEEcCCCCc---EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 337 VAVSLHQGSTVISMDFHPSHQT---LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 337 ~~~~l~h~~~V~~v~fsp~g~~---llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
.+-.+.-...-+.++|.+.|.. ++|.|..||.|.+||...- +..... . ....+..|++.|..+.
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~----------~-~la~~~~h~G~V~gLD 123 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASE----------E-VLATKSKHTGPVLGLD 123 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcch----------H-HHhhhcccCCceeeee
Confidence 4455666778899999999886 6999999999999998652 100000 0 0112667999999999
Q ss_pred EcCCCC-EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee
Q 001343 414 WSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1096)
Q Consensus 414 ~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 491 (1096)
|++... .||+|+.||.|.|||++.-+...... -....+.|.+++|+..-.. +|++++.+|.+.||| ...+.+-.+.
T Consensus 124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls 201 (1049)
T KOG0307|consen 124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLS 201 (1049)
T ss_pred ccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccc
Confidence 999654 99999999999999998754333211 1235678999999987765 899999999999999 6667777776
Q ss_pred CCCC--CeEEEEeeecCCCcEEEEEECC---CeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCC-CEEEEEeeccCCCC
Q 001343 492 GHEA--PVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDS 564 (1096)
Q Consensus 492 ~~~~--~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~ 564 (1096)
.+.. .+..+.|||+... .|++++.| -.|.+||++.... ...+..|...|.++.|++.+ .++++++. |+
T Consensus 202 ~~~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~ 276 (1049)
T KOG0307|consen 202 DTPGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DN 276 (1049)
T ss_pred cCCCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CC
Confidence 5554 4778999998654 45555544 3699999986544 45678999999999999877 78888887 99
Q ss_pred eEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCCe
Q 001343 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 618 (1096)
.|.+|+.++++.+..+....+ .+..+.|+|... .+++++-||.|.||.+.+..
T Consensus 277 ~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 277 RIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999999999988544 788899999775 77788999999999987644
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-18 Score=187.75 Aligned_cols=278 Identities=17% Similarity=0.268 Sum_probs=215.4
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 340 ~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
.++|.++|.|+.|...|. ++++|+.|..|+||..+++.++.+ +.||.+.|+.++.+.+..
T Consensus 186 LlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNNT 245 (1113)
T ss_pred HHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhhh
Confidence 357999999999999999 599999999999999999998865 889999999999999999
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceE-EE---eeCC-C
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FN---FEGH-E 494 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-~~---~~~~-~ 494 (1096)
++|+++.|..|++|.+.++..+. .+.||++.|++++|+|- .+.+.||++++||..-..+ .. ++.. .
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccc
Confidence 99999999999999999988777 68899999999999985 3678899999999332221 11 1111 1
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCC-EEEEEeeccCCCCeEEEEeCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
.-+.++.| ..++..+++|+.|+.-+.|.+..... +...+.-+..+.+.. +.++.-. +..+.+|++.+
T Consensus 317 ~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~----~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 317 DLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARN----DHRLCVWNLYT 384 (1113)
T ss_pred cceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeee----eeEeeeeeccc
Confidence 23444444 33567789999999998886542211 111112222222222 3333333 77889999999
Q ss_pred CeeeEEEcCcCccceEEEEEeCCCCE-EEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 574 GTIKRTYAGFRKKSNGVVQFDTTQNH-FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
|...+.+.+|.. .+..+.++|-+.. ..+++.||...|||+-.|.+++..... ...+....|+++|..++...+-|.
T Consensus 385 g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 385 GQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred chhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCc
Confidence 999999999988 8888999996654 457889999999999999888877643 237788899999999999888899
Q ss_pred EEEEEcCCC
Q 001343 653 FKILANAIG 661 (1096)
Q Consensus 653 i~iwd~~~~ 661 (1096)
+.|.....+
T Consensus 462 l~i~g~gqs 470 (1113)
T KOG0644|consen 462 LYILGTGQS 470 (1113)
T ss_pred eEEeccCCC
Confidence 999876544
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-16 Score=145.09 Aligned_cols=280 Identities=17% Similarity=0.235 Sum_probs=193.8
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.|.+-+++|.++ +|+.|..+|.|.+..+..-..-... .....+.-...+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 577789999999 6999999999999998642111000 00000111247899999999998 45777775
Q ss_pred CCCeEEEEEccCCCc---ccccee--ecccc-----cCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC
Q 001343 426 TKHLIQLYSYAGSND---LRQHSQ--IDAHV-----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~---~~~~~~--l~~h~-----~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~ 494 (1096)
||.|+-|....... .+.+.+ ...|. -.|++|...|..+ -++.++.|+.++-|| .+|+..+.++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998764322 111111 12233 3688999998877 466666899999999 9999999999999
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC----------CCcEEEEEEcCCCCEEEEEeeccCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~l~~s~~~~~l~~~~~~~~~~~ 564 (1096)
+.|.++.-.. ....+++|++||++|+||.++.+.+..+... +.+|.+++.+ ...+++|+ ..
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-----CC
Confidence 9999998632 2347899999999999999999887654322 2256666654 55888876 67
Q ss_pred eEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC-CE
Q 001343 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NL 643 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 643 (1096)
.+.+|.++..++...|.-.. .+..+.|. ...+++++..+.|.-|.+ +|..........+ ..++..|+... +.
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCcc--ceeeecccCCceEE
Confidence 89999999988888776432 45556674 457888888889999987 4555554544433 45555665443 34
Q ss_pred EEEEECCCcEEEE
Q 001343 644 LAVTTADNGFKIL 656 (1096)
Q Consensus 644 l~~~~~dg~i~iw 656 (1096)
|-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4445555555554
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=157.20 Aligned_cols=283 Identities=17% Similarity=0.215 Sum_probs=197.1
Q ss_pred EEee-cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc-cCCCCEEEEEEc
Q 001343 338 AVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWS 415 (1096)
Q Consensus 338 ~~~l-~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s 415 (1096)
.+.+ .|.+.|+|+.|-.+++ |.+|...|.|++|++++.+.+.. +. .|...|+.+.--
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~ 65 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSI 65 (323)
T ss_pred eeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeec
Confidence 4444 4999999999999986 77899999999999998776532 33 367789999888
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC-cE-----------EEEE-c
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LI-----------KVWE-L 482 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~-~i-----------~iwd-~ 482 (1096)
|+ ..|.+-+.|+.+.+|++..+..+. -|.-.++++.|.+.. +...+... .. .+-| -
T Consensus 66 p~-d~l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfS----l~~~~k~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 66 PN-DSLDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFS----LVKKPKNSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred CC-cchhhcCCCceEEEEEccCcceEE------Eeeeeccccccccce----eccCCCcchhheecCCcccchhhhhccC
Confidence 87 567788899999999998754332 355556666665421 12111111 11 1111 0
Q ss_pred CCceEEEe----eCCCCCeEEEEeeecCCC-cEEEEEECCCeEEEEEcCCCCeeeE----------EeCCCCcEEEEEEc
Q 001343 483 SGRKLFNF----EGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYDTMGSRVD----------YDAPGHWCTTMLYS 547 (1096)
Q Consensus 483 ~~~~~~~~----~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~i~~l~~s 547 (1096)
....+... .+..+.+.+..+...... -++++|.++|.+.+||+.++..... ...|..+|.++.+.
T Consensus 135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya 214 (323)
T KOG0322|consen 135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA 214 (323)
T ss_pred ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec
Confidence 11111111 123445666554332222 3567788899999999998744432 34566688999988
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCC--Cee-eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESE--GTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~--~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
+.-..=++++. +..+..|++.. +.+ ++.........+..+.+-||++.+++++-|+.|+||+.++..++..+.
T Consensus 215 s~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk 290 (323)
T KOG0322|consen 215 SSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK 290 (323)
T ss_pred hhhcCCcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh
Confidence 76555555554 66777787653 221 122222222357778899999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.|.. .|++++|+|+..++|.++.|+.|.+|++
T Consensus 291 yHsa--gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSA--GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhc--ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8875 8999999999999999999999999986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.7e-17 Score=158.58 Aligned_cols=271 Identities=11% Similarity=0.135 Sum_probs=194.1
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CCCEEEEEECCCeEEEEEcc
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYA 436 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~~~dg~i~vwd~~ 436 (1096)
.+|++...|.|++||..+++.+.. +++|...++.+.|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 688899999999999999887754 788899999999987 46788999999999999999
Q ss_pred CCCccccceeecccc-cCEEEEEEecCCCcEEEEEEe----CCCcEEEEE-cCCce-EEEe-eCCCCCeEEEEeeecCCC
Q 001343 437 GSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG----DDKLIKVWE-LSGRK-LFNF-EGHEAPVYSICPHHKENI 508 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s----~d~~i~iwd-~~~~~-~~~~-~~~~~~v~~~~~~~~~~~ 508 (1096)
+......+ ...+|. .+..+++..-.++ .+++|. .|-.|.+|| ...+. +..+ ..|...|+++.|+|+. .
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence 87665543 345565 4667777765666 677664 467899999 54443 5554 5799999999999984 5
Q ss_pred cEEEEEECCCeEEEEEcCCCCe---eeEEeCCCCcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
++|++|+.||.|.+||+..... +.....+...|..+.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 7999999999999999875432 22334556679999999887 34555554 7889999999887655443321
Q ss_pred c------------cceEEEEEeC-CCCEEEEEEc-CCeEEEEeCC---CC---eEEEEeecCCCCCCccEEEEeCCCCEE
Q 001343 585 K------------KSNGVVQFDT-TQNHFLAVGE-DSQIKFWDMD---NV---NILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1096)
Q Consensus 585 ~------------~~i~~~~~~~-~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1096)
- ..|. +.+| ++..++.++. -+...++-+. ++ +.+..+.++ +...|+++.|...+.++
T Consensus 255 ~~~~d~r~~~~~dY~I~--~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVIN--EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVL 331 (376)
T ss_pred chhhhHHhhhhhhheee--cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhccccee
Confidence 0 0111 2223 3344444443 5555555443 23 233344432 34478899999899999
Q ss_pred EEEECCCcEEEEEcC
Q 001343 645 AVTTADNGFKILANA 659 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~ 659 (1096)
.+|+.||.+.+|...
T Consensus 332 ~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVE 346 (376)
T ss_pred eccCCCceEEEEecC
Confidence 999999999999863
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=175.10 Aligned_cols=250 Identities=14% Similarity=0.169 Sum_probs=189.5
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcc-----CCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-----GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
.+..|...|..++|.|-...|++|+.||.|++|+++ ....+..+.++.+|.++|.|++..+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 366799999999999999999999999999999993 2344667778999999999999999999 899999999
Q ss_pred cEEEEE-c------CC----ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC--CCCcEE
Q 001343 476 LIKVWE-L------SG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCT 542 (1096)
Q Consensus 476 ~i~iwd-~------~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~ 542 (1096)
+|+.|+ . +. .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+.. ..+...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999995 1 11 2345678999999999998765 5799999999999998765554 22222 222344
Q ss_pred EEEEcCCCCE-EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC------ccceEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 001343 543 TMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 543 ~l~~s~~~~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
++.+...... .++... .+.-.+.+...+..+..+.... ...+..+..+|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 5555333211 222111 2222334444444444433211 1245567888999999999999999999999
Q ss_pred CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++.++.....+.. .++++++.|+|.+|++++.|+.+++|.+...
T Consensus 520 ~~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 520 TGKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 9999988887755 8999999999999999999999999998655
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=157.20 Aligned_cols=288 Identities=14% Similarity=0.165 Sum_probs=195.0
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE--eCCC-CcEE
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPG-HWCT 542 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~-~~i~ 542 (1096)
.++++-..|+|++|| .+++.+..++++...++.+.|.....++.+.+++.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 688888899999999 88999999999999999999976545678999999999999999987665433 3333 3677
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee-eEEEc-CcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCe-
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYA-GFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN- 618 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~- 618 (1096)
+++....++.++++..-...+..+.+||++..+. ++.+. .|.+ .|++++|+|+. +.|++|+.||.|.+||++...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 8887778888888876555578999999998765 66654 4555 89999999954 789999999999999997642
Q ss_pred ---EEEEeecCCCCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecC-CCeEE
Q 001343 619 ---ILTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS-ASSAV 693 (1096)
Q Consensus 619 ---~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~lv 693 (1096)
++.++. +...|.++.|..++ +.|.+-+...++.+|+++.+.. ...+........ .....+ -.+++
T Consensus 201 eDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~------d~r~~~~~dY~I 270 (376)
T KOG1188|consen 201 EDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSAD------DLRKEDNCDYVI 270 (376)
T ss_pred hhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhh------hHHhhhhhhhee
Confidence 222222 22368999999877 5688889999999999988842 222221100000 000000 01111
Q ss_pred ecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCC-CCCccceeeeee--ecCCceEEEEcCCCCCCcccEEEE
Q 001343 694 SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV-TDKPKPWQLAEI--VDSGQCRLVTMPESTDTSSKVVRL 770 (1096)
Q Consensus 694 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l 770 (1096)
-... -.++...+.++. -+...++-+... ........ .+.| +|..-|+++
T Consensus 271 ~~~~-------------------------~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a-~l~g--~~~eiVR~i 322 (376)
T KOG1188|consen 271 NEHS-------------------------PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPA-ILQG--GHEEIVRDI 322 (376)
T ss_pred eccc-------------------------CCCcceEEEeccccCceeEEEeeecccccccCccc-cccC--CcHHHHHHH
Confidence 1111 011222222222 355555544321 11111111 2222 266778899
Q ss_pred EEecCCceEEEeecCCeEEEeec
Q 001343 771 LYTNSAVGLLALGSNGVQKLWKW 793 (1096)
Q Consensus 771 ~~s~~~~~l~~~~~dg~v~vw~~ 793 (1096)
.|...+..+.+++.||.+.+|..
T Consensus 323 ~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 323 LFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhhcccceeeccCCCceEEEEec
Confidence 99988888999999999999995
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-16 Score=148.50 Aligned_cols=259 Identities=20% Similarity=0.316 Sum_probs=183.4
Q ss_pred CCCceeecCCccHHHHHhhcCCCC-CCCceeecCCCce-------------------eeecCCCC-------cceEEeec
Q 001343 290 PTPGMVDYQNPDHEQLMKRLRPAP-SAEEVTYSSSRHQ-------------------TWSLDDLP-------RTVAVSLH 342 (1096)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-------------------~~~~~~~~-------~~~~~~l~ 342 (1096)
.++..+.++....+-..+.+..++ .++.++-++.... +|.+...- -+++..|.
T Consensus 40 NqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ld 119 (370)
T KOG1007|consen 40 NQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLD 119 (370)
T ss_pred ceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCC
Confidence 445566666666555555554433 2333333332221 77765322 23444444
Q ss_pred --CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CC
Q 001343 343 --QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1096)
Q Consensus 343 --h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~ 418 (1096)
+-+.|.|+.|.|++.. +|+- .|..|.+|++..+..+.. .+ ....-.+|....++-+||| ||
T Consensus 120 teavg~i~cvew~Pns~k-lasm-~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 120 TEAVGKINCVEWEPNSDK-LASM-DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred HHHhCceeeEEEcCCCCe-eEEe-ccCceEEEEcccCcchhe-ee------------cccccccccceecccccCCCCcc
Confidence 5569999999999996 5554 599999999998776321 11 1111223666788889999 78
Q ss_pred CEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCC
Q 001343 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAP 496 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~ 496 (1096)
+.+++. .|+++..||+.+.++...+ -.+|...|..+.|+|+.+. +|++|+.||.|++|| ....++..+.+|...
T Consensus 185 nqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 185 NQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred ceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence 888876 4789999999987766543 3478899999999999887 899999999999999 667789999999999
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCC-----------------------------eeeEEeCCCCcEEEEEEc
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------------SRVDYDAPGHWCTTMLYS 547 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~i~~l~~s 547 (1096)
|+++.|+|..+ ++|++|+.|..|.+|....-. .+..+..|...|++++||
T Consensus 261 vW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 261 VWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 99999999865 799999999999999653211 112455667789999998
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeC
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.-...+++.-. .||.+.|=.+
T Consensus 340 sadPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 340 SADPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred cCCCeeEEEec---cCceEEeecC
Confidence 87776654332 2777766443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=181.86 Aligned_cols=266 Identities=15% Similarity=0.197 Sum_probs=202.2
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|.+.|.|+.|...|.++++|+.|..++||..+++.++. ...||.+.|+.++.+.++. +++++|.|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEe
Confidence 78999999999999999999999999999999999988877 6889999999999998887 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE---Ee-CCCCcEEEEEEcCCCCEEEEE
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YD-APGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
..+.++..+.||++.|++++|+|-. +.+.||++++||.+-...... .. ....-+.++.|-..+..++++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9999999999999999999998843 778999999999882111111 11 122356777787888888888
Q ss_pred eeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
+. ++.-..|..... ..+.. .+.-+..+.+- .+.+++-.+..+++|++.+|.+.+.+.++.+ .+..+
T Consensus 335 s~----d~ea~n~e~~~l------~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvL 401 (1113)
T KOG0644|consen 335 SR----DGEARNHEFEQL------AWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVL 401 (1113)
T ss_pred cC----CcccccchhhHh------hhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceeee
Confidence 76 555555544311 11111 11111222122 4556666788999999999999999998877 88999
Q ss_pred EEeC-CCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 636 RFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 636 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
.++| +.....+++.||...|||+-.|........+ ...+-...||++|..++..-.
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g------h~kl~d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG------HGKLVDGKFSQDGTSIALSDD 458 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCCcceeeecc------cceeeccccCCCCceEecCCC
Confidence 9999 5667778999999999999888433322222 233445688888887755533
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=169.60 Aligned_cols=269 Identities=15% Similarity=0.197 Sum_probs=202.6
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
+|++.+. ......+.-...|+|++|+|....++|.|..+|.|.+||+..+.......+ ......|.
T Consensus 226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l-------------s~~~~sh~ 291 (555)
T KOG1587|consen 226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL-------------SALEVSHS 291 (555)
T ss_pred EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc-------------ccccccCC
Confidence 8999887 777888889999999999999988999999999999999988775311000 01245689
Q ss_pred CCEEEEEEcCCC--CEEEEEECCCeEEEEEccCCCccccceee--c-------ccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 407 ISVSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLRQHSQI--D-------AHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 407 ~~V~~l~~spd~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~l--~-------~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
.+|+.+.|-.+. .-+++++.||.|..|+++.-........+ . .-...+++++|.+.... .++.|+++|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 999999998754 44999999999999987653321111001 1 12347899999998776 789999999
Q ss_pred cEEEEE-c--CCce------EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC-CCCeeeEEeCCCCcEEEEE
Q 001343 476 LIKVWE-L--SGRK------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPGHWCTTML 545 (1096)
Q Consensus 476 ~i~iwd-~--~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~ 545 (1096)
.|.--+ . +... ...+..|.++|+++.++|-.. ..+++++ |.+++||... ....+..+..+...+++++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence 998844 2 2122 345667899999999987543 3444555 9999999887 6666677777777899999
Q ss_pred EcCCCCEEEEEeeccCCCCeEEEEeCCC--CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 546 YSADGSRLFSCGTSKDGDSFLVEWNESE--GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
|||....++++.. ++|.|.+||+.. ..++.+.... ......+.|+++|..+++|...|.+.+|++..
T Consensus 449 WSptrpavF~~~d---~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATVD---GDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEEc---CCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9998877666553 499999999864 3344444433 33667788999999999999999999999864
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=145.78 Aligned_cols=230 Identities=15% Similarity=0.192 Sum_probs=174.2
Q ss_pred EEEEEE----CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-------CcEEEEE-cCC---
Q 001343 420 YVGVAF----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-------KLIKVWE-LSG--- 484 (1096)
Q Consensus 420 ~l~s~~----~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-------~~i~iwd-~~~--- 484 (1096)
.+++|. .|+.|.+.+++.+........+..|.+.|+.++-+|-.+. +|+|+..+ ..+.||. ...
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~-ilaT~yn~~s~s~vl~~aaiw~ipe~~~~ 106 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR-ILATVYNDTSDSGVLTGAAIWQIPEPLGQ 106 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc-eEEEEEeccCCCcceeeEEEEecccccCc
Confidence 444554 3578888877765443333467789999999999998876 67777653 2467898 221
Q ss_pred ------ceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee-eEEe-----CCCCcEEEEEEcC--C
Q 001343 485 ------RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYD-----APGHWCTTMLYSA--D 549 (1096)
Q Consensus 485 ------~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~-----~~~~~i~~l~~s~--~ 549 (1096)
+++..+. .+-+.|.|+.|.| ++..+++.. |..|.+|+++....+ ..+. .+....++-+|+| +
T Consensus 107 S~~~tlE~v~~Ldteavg~i~cvew~P--ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 107 SNSSTLECVASLDTEAVGKINCVEWEP--NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred cccchhhHhhcCCHHHhCceeeEEEcC--CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCc
Confidence 1223333 4556899999988 556777766 889999999877663 2221 2344678889998 7
Q ss_pred CCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCC-CeEEEEeecCC
Q 001343 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDN-VNILTSTDAEG 627 (1096)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 627 (1096)
|+.+++.+ ++++..||+++.+....+...++..+..+.|+|+.. +|+++++||.|+|||.+. ..++..+..|.
T Consensus 184 gnqv~tt~-----d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs 258 (370)
T KOG1007|consen 184 GNQVATTS-----DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHS 258 (370)
T ss_pred cceEEEeC-----CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCc
Confidence 88888876 899999999999888888766666888999999875 567789999999999875 56788888888
Q ss_pred CCCCccEEEEeC-CCCEEEEEECCCcEEEEEcCC
Q 001343 628 GLPNLPRLRFSK-EGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 628 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
| .|.++.|+| ..+++.+++.|..|.+|....
T Consensus 259 H--WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 259 H--WVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred e--EEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 7 999999999 557889999999999997644
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-14 Score=141.59 Aligned_cols=239 Identities=10% Similarity=0.091 Sum_probs=184.5
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC--CcEEEEE-c
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-L 482 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d--~~i~iwd-~ 482 (1096)
...+..+.|..|...|..|+.||. ++|+.+...... ........|.-+-|+.. ++|..+.+ +.+++.+ .
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~---~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCF---SKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHHhh---cccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcc
Confidence 446778889999999999999874 677776543321 12223345666667654 45554444 4589999 7
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC---CCcEEEEEEcCCCCEEEEEeec
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
.+..+..+. ...+|.++.++. +.|+++-.+. |.|||+++.+.+.++... ...+.++.+++.+.+++.-+.
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s- 149 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS- 149 (391)
T ss_pred cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-
Confidence 777776665 456788998843 5677766554 999999998887765433 335777777777778886542
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCe-EEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
...|.|.+||..+-+.+..+..|.+ .+.+++|+++|.+|+++++.|+ |||+.+.+|+.+..++-......|.+++|+
T Consensus 150 -~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 150 -TTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 2378999999999999999999988 9999999999999999999886 799999999999998765555678999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|++.+|++.+..++|++|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-15 Score=147.06 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=174.7
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
-..+|+|.+|++|+. .+|++-....|.||.....+.-. ..+++..|...|++|.|+|..+.|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 456899999999999 69998889999999987765221 2345888999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceE-----EEeeCCCCCe
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-----FNFEGHEAPV 497 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-----~~~~~~~~~v 497 (1096)
+|+.|..-+||....+...+...++..|+..++++.|+|.++ .|++||.-+.|.||-.+++.- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999855555555556788999999999999999 899999999999998333322 1234567789
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcC-----CC-------------CeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYD-----TM-------------GSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-----~~-------------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
++++|+| ++-++++|+.|+..|++..- .. +...++...++.+..+.|+|+|..|+-.+.
T Consensus 150 ~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 9999998 55799999999999999642 11 111233455678999999999999998887
Q ss_pred cCCCCeEEEEeCCCCe-eeEEEcCcCccceEEEEEeC
Q 001343 560 KDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~ 595 (1096)
+..+.+-|..... .+.......- +..++.|-.
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~is 259 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWIS 259 (361)
T ss_pred ---CCceEEeecCCCchhccchhhccC-CceeeEeec
Confidence 8899998877654 2333322222 455555543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-16 Score=148.55 Aligned_cols=309 Identities=11% Similarity=0.118 Sum_probs=194.6
Q ss_pred eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeE
Q 001343 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1096)
Q Consensus 530 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 609 (1096)
+.+.++.+...++++.|-.+++ |+++.. .|.+.+|++.+.+..-.+.++....+..+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~----~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLS----VGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccc----cceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 3455667888899999988776 666665 8999999999999988888776668888887776 678889999999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCC-cEEEEEcCCCccccccccCCCcccccCcceeEEeecC
Q 001343 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1096)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 688 (1096)
.+|++..+..+..-.. .++++.|.+-. +...+... ..-.++-+.... ....... ....+.+-++
T Consensus 80 ~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~g-------~~tqv~i~dd 144 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDGG-------DTTQVQIADD 144 (323)
T ss_pred EEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhhccC-------ccceeEccCc
Confidence 9999987655543321 34455554321 11111110 111111100000 0000000 0001111111
Q ss_pred CCeEEecCCCCceeEeccCCCcCCCcccCCC-CccCCCCCCccccCCCCCccceeeeeeecCCc-----eEEEEcCCCCC
Q 001343 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVD-PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQ-----CRLVTMPESTD 762 (1096)
Q Consensus 689 g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~ 762 (1096)
...- +....+ ..+ .......-+++.|..+|.+.+||+......-+ -..... ..
T Consensus 145 ~~~~-----------------Klgsvm-c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~---as 203 (323)
T KOG0322|consen 145 SERS-----------------KLGSVM-CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPN---AS 203 (323)
T ss_pred hhcc-----------------ccCcee-eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccch---hh
Confidence 0000 000000 000 00011112466888899999999984211000 011111 23
Q ss_pred CcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCC
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~d 842 (1096)
|..+|.++.|.+.-..=++++.+..+..|+++....+. .-+..+.. ..-.|..+.+-||
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl---------------q~~~e~~l------knpGv~gvrIRpD 262 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL---------------QIRKEITL------KNPGVSGVRIRPD 262 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcc---------------cccceEEe------cCCCccceEEccC
Confidence 88899999998866556777777788888875432110 11111111 2334778999999
Q ss_pred CcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEee
Q 001343 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1096)
Q Consensus 843 g~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~ 902 (1096)
++.+|+++ |++|+||+.++...++.++.|.+.|.+++|+| +..++|.++.|++|.+|++
T Consensus 263 ~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 99999999 99999999999999999999999999999999 8899999999999999986
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=169.18 Aligned_cols=307 Identities=17% Similarity=0.301 Sum_probs=212.4
Q ss_pred ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC---CCCeEEEEeeecCCCcEEEEEECCCeEEEEE
Q 001343 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1096)
Q Consensus 449 ~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (1096)
+....-..+.|+|-.. .++++...-.|++|| ..++.+..|..+ ...|+.+.+-...|..++++|+.||.||||+
T Consensus 1062 ~n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred cCCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3444667788888888 788888888999999 899988877644 4568888887777788999999999999995
Q ss_pred cCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE
Q 001343 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1096)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 604 (1096)
--.... ....|+++.. .-++. ..+..+ .-..+.|.....+|+++|
T Consensus 1140 ~y~~~~------------------~~~eLVTaw~------------~Ls~~----~~~~r~-~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1140 DYADKW------------------KKPELVTAWS------------SLSDQ----LPGARG-TGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred cccccc------------------CCceeEEeec------------ccccc----CccCCC-CCeeeehhhhCCeEEecC
Confidence 321100 1123333321 11110 111111 113356777677888888
Q ss_pred cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeE
Q 001343 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1096)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1096)
+-..|+|||.........+..... ..|+++.-+. .|+++++|..||.|++||......
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-------------------- 1243 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-------------------- 1243 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCc--------------------
Confidence 889999999999888888776543 3566665544 579999999999999999755411
Q ss_pred EeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCC
Q 001343 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (1096)
Q Consensus 684 ~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 763 (1096)
|..|.+|.- |
T Consensus 1244 ---------------------------------------------------ds~v~~~R~-------------------h 1253 (1387)
T KOG1517|consen 1244 ---------------------------------------------------DSLVCVYRE-------------------H 1253 (1387)
T ss_pred ---------------------------------------------------cccceeecc-------------------c
Confidence 012222321 4
Q ss_pred ccc--EEEEEEecCCce-EEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeec
Q 001343 764 SSK--VVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1096)
Q Consensus 764 ~~~--i~~l~~s~~~~~-l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s 840 (1096)
... |..+.+.+.|-. +++++.+|.|++||+..... . ..+.....- ...+..+++..+
T Consensus 1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e------------------~~~~iv~~~-~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-E------------------TFLTIVAHW-EYGSALTALTVH 1313 (1387)
T ss_pred CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-c------------------ccceeeecc-ccCccceeeeec
Confidence 444 777778776544 99999999999999854210 0 000000000 013368999999
Q ss_pred CCCcEEEEecCCeEEEEEcccceEEEeecCC-------CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccc
Q 001343 841 KNDSYVMSATGGKISLFNMMTFKVMTTFMSP-------PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1096)
Q Consensus 841 ~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h-------~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~ 905 (1096)
++...+|+|+.+.|+||++ .|+.+..++.+ .+.+.|++|+| -.-++|+|+.|.+|.||.....
T Consensus 1314 ~hapiiAsGs~q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1314 EHAPIIASGSAQLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCCCeeeecCcceEEEEec-ChhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 9999999999999999998 66666655533 35678999999 8889999999999999987654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-15 Score=141.99 Aligned_cols=284 Identities=14% Similarity=0.265 Sum_probs=202.7
Q ss_pred EEeecCCCceEEEEEc--CCCCcEEEEEeC----CCeEEEEecC--CCCeeecccceeecccccCccccccccccCCCCE
Q 001343 338 AVSLHQGSTVISMDFH--PSHQTLLLVGSS----NGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fs--p~g~~llasg~~----dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
+.+..-.-.+.++.|| |+.+..||.|+. .+.|.|-.+. +++.+.. --..|.-++
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~YP~ 99 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHPYPV 99 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCCCCc
Confidence 3444445578889998 555567898874 3566665543 3443321 123588899
Q ss_pred EEEEEcCCCC-----EEEEEECCCeEEEEEccCCC-ccccce-----eecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 410 SRVAWSPDGN-----YVGVAFTKHLIQLYSYAGSN-DLRQHS-----QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 410 ~~l~~spd~~-----~l~s~~~dg~i~vwd~~~~~-~~~~~~-----~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
+.+-|.|+.. +||+++ ..+++|.+...+ .+.... .-..+..++++..|+.-..+ +|.++|-|.+..
T Consensus 100 tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCT 176 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCT 176 (364)
T ss_pred cceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEE
Confidence 9999999863 566654 389999987421 111111 12346779999999986665 899999999999
Q ss_pred EEE-cCC---ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCC--CCcEEEEEEcCCC-
Q 001343 479 VWE-LSG---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAP--GHWCTTMLYSADG- 550 (1096)
Q Consensus 479 iwd-~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~--~~~i~~l~~s~~~- 550 (1096)
||| .+| .....+-.|...|..++|... .-+.+++.+.||.+|+||++..+.-. .+... ..+...++|++..
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999 654 345678899999999999863 44789999999999999999765543 23322 3478888998754
Q ss_pred CEEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeCC-CCEEEEEEcCCeEEEEeCCCCeE------EEE
Q 001343 551 SRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVNI------LTS 622 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~------~~~ 622 (1096)
+++++... ....|.+.|++. ...+..+++|.. .|+.++|.|. ..+|.++|+|..+.+||+...-. +..
T Consensus 256 nymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 256 NYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred hHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 56666544 266899999986 467888999988 8999999995 47899999999999999975322 112
Q ss_pred eecCCCCCCccEEEEeC-CCCEEEEEECC
Q 001343 623 TDAEGGLPNLPRLRFSK-EGNLLAVTTAD 650 (1096)
Q Consensus 623 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 650 (1096)
+. ....|+.+.|++ .+..++.+...
T Consensus 332 y~---a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 332 YT---AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hh---ccceeeeeeecccCCCEEEEEecC
Confidence 22 233899999997 56677776543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=151.09 Aligned_cols=309 Identities=11% Similarity=0.113 Sum_probs=217.6
Q ss_pred EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC------CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC
Q 001343 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1096)
Q Consensus 533 ~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1096)
.+..|.+.|.++.|+.++++|++|+. +..+++|++. +.+++.....|+...|.+++|...+.++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 44578889999999999999999997 8899999975 4566776666665689999999999999999999
Q ss_pred CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEee
Q 001343 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1096)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 686 (1096)
++|...|+.+.+.+..+......+.|+.+..+|..+.+++.+.++.|.+||..........+-.... ......+.|+
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~---~~~F~t~~F~ 203 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS---GKNFYTAEFH 203 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC---Cccceeeeec
Confidence 9999999999999999887777778999999999999999999999999998766322211111000 1112234444
Q ss_pred cCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCce--EEEEcCCCCCCc
Q 001343 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQC--RLVTMPESTDTS 764 (1096)
Q Consensus 687 ~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~ 764 (1096)
|-... ++++.+..+.+.+||......+-.. ....++. ..
T Consensus 204 P~~P~------------------------------------Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~---~~ 244 (609)
T KOG4227|consen 204 PETPA------------------------------------LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ---EN 244 (609)
T ss_pred CCCce------------------------------------eEEeccccCCCCceeeccccchHHhhhccccCcc---cc
Confidence 43332 4566667788999998731111000 0111121 22
Q ss_pred ccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcccccccccc----CCCcCCCeeeeeec
Q 001343 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA----GVNLEEAVPCIALS 840 (1096)
Q Consensus 765 ~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~----g~~~~~~v~~l~~s 840 (1096)
..-.++.|+|.|.++++.-....-.+|++.. .+|....+. |......+.+++|.
T Consensus 245 ~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S----------------------~R~~V~k~D~N~~GY~N~~T~KS~~F~ 302 (609)
T KOG4227|consen 245 TEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS----------------------QRCFVLKSDHNPNGYCNIKTIKSMTFI 302 (609)
T ss_pred hhhhheeeCCCCCeehhhhccCCCEEeeeec----------------------ccceeEeccCCCCcceeeeeeeeeeee
Confidence 3346788999999998887765555666532 222211111 11134567788887
Q ss_pred CCCcEEEEecC-CeEEEEEccc-----c------------------eEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCe
Q 001343 841 KNDSYVMSATG-GKISLFNMMT-----F------------------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (1096)
Q Consensus 841 ~dg~~la~~~d-g~v~iwd~~~-----~------------------~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~ 896 (1096)
.|- .+++|+| =.|++|.+.. | +.+..+++|.+.+..+.|+| ...+|++.+-.+.
T Consensus 303 ~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~ 380 (609)
T KOG4227|consen 303 DDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENS 380 (609)
T ss_pred cce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccchhhh
Confidence 654 4899996 5699998742 1 12356889999999999999 8889999999999
Q ss_pred EEEEeeccceeeeeeccc
Q 001343 897 IHIYNVRVDELCVWSIDT 914 (1096)
Q Consensus 897 i~iw~~~~~~~~~w~~~~ 914 (1096)
++||.-..- .|+++.
T Consensus 381 ~KlWS~~r~---P~~~D~ 395 (609)
T KOG4227|consen 381 FKLWSDHRL---PWSYDL 395 (609)
T ss_pred eeccccccC---CcccCC
Confidence 999975432 255544
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-15 Score=154.96 Aligned_cols=165 Identities=16% Similarity=0.179 Sum_probs=129.5
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.||++-|+|+.|+.||.+|++|+.|-.+.|||.-..+.+..+ -.||...|.++.|-|....-.+++|..|+.|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 48999999999999999999999999999999999876666643 3499999999999997555489999999999999
Q ss_pred E-cC----------CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee----------EEeCCCC
Q 001343 481 E-LS----------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPGH 539 (1096)
Q Consensus 481 d-~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~ 539 (1096)
| .. ......+..|...|..++..|.+ .+.+.++++||+|+-+|++...... .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9 32 13445677899999999876642 2789999999999999998532111 1111122
Q ss_pred cEEEEEEcCCCC-EEEEEeeccCCCCeEEEEeCC
Q 001343 540 WCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 540 ~i~~l~~s~~~~-~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
...++.++|... +|++|+. +...++||.+
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~R 231 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRR 231 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhh
Confidence 567899999765 5666665 8889999953
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-14 Score=156.50 Aligned_cols=271 Identities=13% Similarity=0.194 Sum_probs=177.4
Q ss_pred EEEEEeCCCeEEEEecCC-CCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEcc
Q 001343 359 LLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYA 436 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~ 436 (1096)
++++...++.|.+|++.+ ++..... .+ .+.+....++++|++++|++++ .++.|.+|+++
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~-----------------~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQ-----------------VV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeee-----------------EE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 445556799999999964 3322110 02 1335677899999999987765 47899999997
Q ss_pred CCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEEE-c-CCc---eEEEeeCCCCCeEEEEeeecCCCcE
Q 001343 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-L-SGR---KLFNFEGHEAPVYSICPHHKENIQF 510 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~-~~~---~~~~~~~~~~~v~~~~~~~~~~~~~ 510 (1096)
....+...... ...+....++|+|+++ +|++++ .++.|.+|+ . .+. .+..+.+ .....+++++| ++++
T Consensus 66 ~~g~l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p--~g~~ 139 (330)
T PRK11028 66 DDGALTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP--DNRT 139 (330)
T ss_pred CCCceEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC--CCCE
Confidence 32222211111 2334578899999999 555554 589999999 4 332 2333332 23456677766 5566
Q ss_pred EEE-EECCCeEEEEEcCCCCeeeE-----Ee-CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC--C--eeeEE
Q 001343 511 IFS-TAIDGKIKAWLYDTMGSRVD-----YD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--G--TIKRT 579 (1096)
Q Consensus 511 l~s-~~~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~--~--~~~~~ 579 (1096)
+++ ...++.|.+||+++...... .. ..+.....++|+|+|++++++.. .++.|.+|++.. + +.+..
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEE
Confidence 654 45679999999986432211 11 22345678999999999988764 378999999873 3 33444
Q ss_pred EcCcCc-----cceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCe----EEEEeecCCCCCCccEEEEeCCCCEEEEEEC
Q 001343 580 YAGFRK-----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 580 ~~~~~~-----~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
+..... .....+.++|++++++++. .++.|.+|++.... .+...... .....+.++|+|++|+++..
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEc
Confidence 332111 1123488999999999885 47899999986532 22222221 14578999999999998775
Q ss_pred -CCcEEEEEcC
Q 001343 650 -DNGFKILANA 659 (1096)
Q Consensus 650 -dg~i~iwd~~ 659 (1096)
+++|.+|++.
T Consensus 294 ~~~~v~v~~~~ 304 (330)
T PRK11028 294 KSHHISVYEID 304 (330)
T ss_pred cCCcEEEEEEc
Confidence 8899999875
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-14 Score=155.65 Aligned_cols=261 Identities=14% Similarity=0.229 Sum_probs=171.8
Q ss_pred eeecCC-CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecC-CCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDD-LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~-~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|+++. ....++.++.+.+....++++|+++++++++..++.|.+|++. +++...... . .
T Consensus 16 ~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~-----------------~-~ 77 (330)
T PRK11028 16 VWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE-----------------S-P 77 (330)
T ss_pred EEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-----------------e-c
Confidence 777753 2234566677777889999999999544555568999999996 333221100 0 1
Q ss_pred CCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEccCCC-ccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-
Q 001343 405 VPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~-dg~i~vwd~~~~~-~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
..+....++|+|++++|++++. ++.|.+|++++.. .......+. +.....+++++|+++. .+++...++.|.+||
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEE
Confidence 2234678999999999988764 7899999997432 222211222 3345678899999984 446666789999999
Q ss_pred cCCceEE-------EeeCCCCCeEEEEeeecCCCcEEEEEEC-CCeEEEEEcCCC--Ce--eeEEeCC------CCcEEE
Q 001343 482 LSGRKLF-------NFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTM--GS--RVDYDAP------GHWCTT 543 (1096)
Q Consensus 482 ~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~--~~--~~~~~~~------~~~i~~ 543 (1096)
.+...+. ... .......+.|+| ++++++++.. +++|.+|+++.. .. ...+... ......
T Consensus 156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p--dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFHP--NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred CCCCcccccCCCceecC-CCCCCceEEECC--CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 4433221 111 123356788876 6788877776 899999999742 22 1222211 113346
Q ss_pred EEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe----eeEEEcCcCccceEEEEEeCCCCEEEEEEc-CCeEEEEeCC
Q 001343 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMD 615 (1096)
Q Consensus 544 l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 615 (1096)
+.++|++++++++.. .++.|.+|++.... .+..+... .....+.++|+|++++++.. +++|.+|+++
T Consensus 233 i~~~pdg~~lyv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 233 IHITPDGRHLYACDR---TASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEECCCCCEEEEecC---CCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 889999999998743 37799999985432 22332221 13345899999999998774 8899999875
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=136.12 Aligned_cols=252 Identities=12% Similarity=0.183 Sum_probs=176.6
Q ss_pred ccCCCCCCccccCCCCCccceeeeee-----ecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccC
Q 001343 721 TSRSMDKPRTVDDVTDKPKPWQLAEI-----VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 795 (1096)
Q Consensus 721 ~~s~d~~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~ 795 (1096)
+++|.+++++.|+.+|+|.+..+... ..+++...+...+ |..+|..++|.. . ++.++.||.|+-|.+..
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa---hdgpiy~~~f~d--~-~Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA---HDGPIYYLAFHD--D-FLLSGGDGLVYGWEWNE 90 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccc---cCCCeeeeeeeh--h-heeeccCceEEEeeehh
Confidence 35667777788888899988887642 3345555666666 999999999983 2 44455569999998854
Q ss_pred CccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCC-cEEEEecCCeEEEEEcccceEEEeecCCCCC
Q 001343 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND-SYVMSATGGKISLFNMMTFKVMTTFMSPPPA 874 (1096)
Q Consensus 796 ~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg-~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~ 874 (1096)
...+ ...-++|......... . ..--.|++|-+.|.. .+|..|+|+.++-||+.+|+..+++++|++.
T Consensus 91 ~~es-------~~~K~lwe~~~P~~~~--~---~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 91 EEES-------LATKRLWEVKIPMQVD--A---VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred hhhh-------ccchhhhhhcCccccC--c---ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence 3221 1134456544332221 0 023468899999766 4555555899999999999999999999999
Q ss_pred eeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceE
Q 001343 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 954 (1096)
Q Consensus 875 i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i 954 (1096)
|.+++--. ....+++|++||++++||.++++ |+-.+...+ ...+++.-.+ ..|.+++. +..+|+++....+
T Consensus 159 vH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk--~~~~lRp~~g---~wigala~--~edWlvCGgGp~l 229 (325)
T KOG0649|consen 159 VHSVVGRN-ANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYK--NPNLLRPDWG---KWIGALAV--NEDWLVCGGGPKL 229 (325)
T ss_pred eeeeeecc-cCcceeecCCCccEEEEeccccc-eeEEecccc--ChhhcCcccC---ceeEEEec--cCceEEecCCCce
Confidence 99999855 45579999999999999999998 442222211 1111111111 24455554 5668999888899
Q ss_pred EEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecC
Q 001343 955 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1005 (1096)
Q Consensus 955 ~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~ 1005 (1096)
.+|++...++...+.- .+.+..+.|-. +.+++++..+.|.-|.+.
T Consensus 230 slwhLrsse~t~vfpi----pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFPI----PARVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eEEeccCCCceEEEec----ccceeEeeeec--ceEEEeccccceeeeeec
Confidence 9999999988777753 66788888854 467778888889999865
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=162.45 Aligned_cols=268 Identities=17% Similarity=0.182 Sum_probs=193.9
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEccCCCc--ccc
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSND--LRQ 443 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~--~~~ 443 (1096)
+.+.||++....... ..-.-...|.|+.|+| +..+||.|+.+|.|.+||+..+.. ...
T Consensus 222 ~~~~vW~~~~p~~Pe-------------------~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ 282 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE-------------------LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG 282 (555)
T ss_pred ceEEEEecCCCCCce-------------------EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc
Confidence 478899987652110 1222467899999999 577888889999999999988765 221
Q ss_pred ce-eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC--ceE-----EEee------CCCCCeEEEEeeecCCCc
Q 001343 444 HS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG--RKL-----FNFE------GHEAPVYSICPHHKENIQ 509 (1096)
Q Consensus 444 ~~-~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~--~~~-----~~~~------~~~~~v~~~~~~~~~~~~ 509 (1096)
+. ....|..+++.+.|..+....-+++++.||.|..|+... .+. .... .-...++++.|.+. +..
T Consensus 283 ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~ 361 (555)
T KOG1587|consen 283 LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPN 361 (555)
T ss_pred cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC-CCc
Confidence 11 234799999999998765422599999999999998221 111 1111 12345788999776 446
Q ss_pred EEEEEECCCeEEEEE---cCCCC-----eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC-CCeeeEEE
Q 001343 510 FIFSTAIDGKIKAWL---YDTMG-----SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTY 580 (1096)
Q Consensus 510 ~l~s~~~dg~i~iwd---~~~~~-----~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~ 580 (1096)
.+++|+.+|.|.--+ .+... ....+..|.++|+++.++|-+..++..+. |..++||... ...++..+
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~ 437 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSL 437 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec----cceeEeccccCCCCcchhh
Confidence 899999999987632 22222 12255677889999999998877665554 9999999987 66777777
Q ss_pred cCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCCe--EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 581 AGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVN--ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
..+.. .+..++|+|... .|+++..||.|.+||+.... ++...... ....+.+.|+++|+.|++|...|.+.+|+
T Consensus 438 ~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 438 DSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred hhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 76665 689999999764 56667789999999997543 33333333 33677888999999999999999999999
Q ss_pred cCCC
Q 001343 658 NAIG 661 (1096)
Q Consensus 658 ~~~~ 661 (1096)
+...
T Consensus 515 l~~~ 518 (555)
T KOG1587|consen 515 LSES 518 (555)
T ss_pred cCch
Confidence 9654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=163.48 Aligned_cols=283 Identities=12% Similarity=0.099 Sum_probs=189.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
..+....-..+.|+|-...++++...-.|+|||.+.++.+..+..-......|+.+.+-.+...-++++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 33444466778899988899999877899999999998876543323345689999987654444899999999999998
Q ss_pred --cCC----ceEEEeeCCCC-----CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcC-
Q 001343 482 --LSG----RKLFNFEGHEA-----PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSA- 548 (1096)
Q Consensus 482 --~~~----~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~- 548 (1096)
..+ +.+..+.+-++ .-..+.+.......+|+++|.-..|+|||.........+.... ..++++.-+.
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 333 22222222111 0111222223333466677778999999999887777655443 3677776554
Q ss_pred CCCEEEEEeeccCCCCeEEEEeCCCCe---eeEEEcCcCcc-ceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 549 DGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKK-SNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~-~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
.|+.+++|.. ||.|++||.+... .+...+.|... .|..+.+.+.|- .+++|+.+|.|++||++.......+
T Consensus 1220 ~gn~i~AGfa----DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1220 HGNIIAAGFA----DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred CCceEEEeec----CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence 4688888887 9999999987643 46667777662 377788888664 5999999999999999874332222
Q ss_pred --ecCCCCC-CccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcc--cccCcceeEEeecCCCe
Q 001343 624 --DAEGGLP-NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFE--ALRTPIESVALKVSASS 691 (1096)
Q Consensus 624 --~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~ 691 (1096)
..+...+ .++++..+++...+|+|+. +.|+||++... .+..+..+... -..+.+.+++|+|.--.
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~--~l~~~k~n~~F~~q~~gs~scL~FHP~~~l 1365 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE--QLNIIKYNPGFMGQRIGSVSCLAFHPHRLL 1365 (1387)
T ss_pred eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh--hhcccccCcccccCcCCCcceeeecchhHh
Confidence 2222112 4899999999999999998 89999998543 23333222111 11234556666665443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=155.17 Aligned_cols=196 Identities=15% Similarity=0.208 Sum_probs=155.7
Q ss_pred eeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeecc
Q 001343 835 PCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSID 913 (1096)
Q Consensus 835 ~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~ 913 (1096)
.+++|+.+|..|++++ ||+++||+..+...+.....|.+.|.++.||| |+++|++.+.| ..+||+..++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~------- 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGA------- 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCc-------
Confidence 7899999999999998 89999999888888888889999999999999 99999999999 89999999986
Q ss_pred ccccccceeeecCC--CCCCCCCceEEEecCC-----cEEEE-EecceEEEEEccccee-----ccccccCCCCCCCceE
Q 001343 914 TWEKRKSVTIHIPA--GKTPTGDTRVQFNADQ-----VRMLV-VHETQLAIYDASKMER-----IRQWTPQDALSAPISC 980 (1096)
Q Consensus 914 ~~~~~~~~~~~~~~--~~~~~~v~~v~fs~dg-----~~l~~-~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~i~~ 980 (1096)
+++... .... ....+.|+.|+ ...+. ..-+.|+.|++..... .++.... ...|++
T Consensus 219 --------~~a~~t~~~k~~-~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~---~~siSs 286 (398)
T KOG0771|consen 219 --------ALARKTPFSKDE-MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR---FKSISS 286 (398)
T ss_pred --------hhhhcCCcccch-hhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc---cCccee
Confidence 222222 2222 56778898887 33333 3456677777753322 2222222 567999
Q ss_pred EEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccC
Q 001343 981 AVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 981 l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~ 1060 (1096)
++.|+||+++|.|+.||.|.|++..+.+...... .. |...|+ .|.|+| |.+.+++.+.|..+.+..+.
T Consensus 287 l~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk------~a---H~~~VT--~ltF~P-dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 287 LAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK------EA---HLGFVT--GLTFSP-DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh------hh---heeeee--eEEEcC-CcCcccccccCCceeEEEEe
Confidence 9999999999999999999999999888665433 23 899999 699999 99999999999999999886
Q ss_pred CCC
Q 001343 1061 ESE 1063 (1096)
Q Consensus 1061 ~~~ 1063 (1096)
-..
T Consensus 355 vd~ 357 (398)
T KOG0771|consen 355 VDK 357 (398)
T ss_pred ecc
Confidence 633
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-14 Score=163.51 Aligned_cols=254 Identities=11% Similarity=0.053 Sum_probs=180.2
Q ss_pred cccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEEccCC----CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc
Q 001343 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~-~~l~s~~~dg~i~vwd~~~~----~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~ 476 (1096)
+..|...|..++.++.. .++++|+.||+|++||...- ...+...++......+.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 77799999999998865 99999999999999997632 22233223444577899999999999 7899999999
Q ss_pred EEEEEc-C--Cce-----EEEeeCC-CCCeEEE-EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE--EeCCCCcEEEE
Q 001343 477 IKVWEL-S--GRK-----LFNFEGH-EAPVYSI-CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTM 544 (1096)
Q Consensus 477 i~iwd~-~--~~~-----~~~~~~~-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~l 544 (1096)
|++.+. . .+. .+....+ .+.+.++ ++........++.+..-+.|..||.+....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999982 2 221 1111222 2334443 333222223788888999999999987766553 34456689999
Q ss_pred EEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC---CCEEEEEE--cCCeEEEEeCCCCeE
Q 001343 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVG--EDSQIKFWDMDNVNI 619 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~--~dg~i~iwd~~~~~~ 619 (1096)
+.+|.+.+++.|+. .|.+.+||++=+.++..........+..+..+|- ....++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999987 8999999999888888876555456666666653 24455444 578899999999876
Q ss_pred EEEeecCCC-----------------CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 620 LTSTDAEGG-----------------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 620 ~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
...+-.... .-......+...+..+.+|+.|..|+.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 666543311 001122334445578899999999999998766
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-13 Score=142.41 Aligned_cols=543 Identities=10% Similarity=0.103 Sum_probs=329.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
......|++|+.... ++|+|+.||.++|-.+.+...-. +.-.+...+.......+.||++.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~----~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDL----NKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcc----cccccccccccchhhhhccCcceEEEEEecccccccc
Confidence 445689999999988 69999999999999987654321 1111223333334457999999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEe
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICP 502 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~ 502 (1096)
+...+|.|.||-+-.|.-.... .-...++.|.+++|+.||. .|+....||.|.+=..+|+.+.--.-...-...+.|
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 9999999999999887655432 1234667899999999999 788889999998877777665332211222345667
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCC-------eee----EEeCCCCcEEEEEEc--------CCCCEEEEEeeccCCC
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMG-------SRV----DYDAPGHWCTTMLYS--------ADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~----~~~~~~~~i~~l~~s--------~~~~~l~~~~~~~~~~ 563 (1096)
++ |...++.+-.+|.++++|.+..- +.. .+...+..|..+.|. ||...++++.. .
T Consensus 165 s~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----n 238 (1189)
T KOG2041|consen 165 SE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----N 238 (1189)
T ss_pred cc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----C
Confidence 55 55778888889999999865321 111 112222345555553 46677888876 7
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC---------CeEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
|.+.+..-.+......+... -.+....|+++|..++++|.+ +.|.+|.. -|+.+.++...+. .|++
T Consensus 239 Gr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~It~ 313 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CITG 313 (1189)
T ss_pred ceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--eeee
Confidence 77776654433222222221 256668999999999998743 35666654 5777888887766 8999
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCc
Q 001343 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~ 714 (1096)
++|-..|-.+|.+- |+.|.+=++...... ..+. ..+.+-..+..
T Consensus 314 lsWEg~gLriA~Av-dsfiyfanIRP~ykW-gy~e-----------~TvVy~y~~~e----------------------- 357 (1189)
T KOG2041|consen 314 LSWEGTGLRIAIAV-DSFIYFANIRPEYKW-GYIE-----------ETVVYVYQKEE----------------------- 357 (1189)
T ss_pred eEEcCCceEEEEEe-cceEEEEeecccceE-EEee-----------eEEEEEEccCC-----------------------
Confidence 99988887777664 667877666443110 0000 01111111100
Q ss_pred ccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeecc
Q 001343 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 794 (1096)
Q Consensus 715 ~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~ 794 (1096)
.....|.+||... .+-.. . .-....++++..+--.|+.-..+|.+.-++.
T Consensus 358 ------------------~p~y~i~Fwdtk~----nek~v-K------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~- 407 (1189)
T KOG2041|consen 358 ------------------LPQYGIMFWDTKT----NEKTV-K------TVTHFENMAFYREHCVLINRQDDGVIPEYST- 407 (1189)
T ss_pred ------------------CcceEEEEEeccc----Chhhh-h------hhcceeehheecccEEEEeccccCCCcchhh-
Confidence 0013466777652 11111 1 1123445566555443444444555543321
Q ss_pred CCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEE---------
Q 001343 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVM--------- 865 (1096)
Q Consensus 795 ~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~--------- 865 (1096)
....+ ++|-..-...+...+.- .-..|.-.-..-++..++.++...+.+|.....+..
T Consensus 408 ---le~~~--------~~~~l~LCNSIGT~lD~--kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~r 474 (1189)
T KOG2041|consen 408 ---LENRS--------RVYFLQLCNSIGTSLDY--KYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIR 474 (1189)
T ss_pred ---hhccc--------ceEEEeeecccCCcCCC--CcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhc
Confidence 00000 00100000001101100 112233333345788888999888999976432211
Q ss_pred -----------------------EeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeecccccccccee
Q 001343 866 -----------------------TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVT 922 (1096)
Q Consensus 866 -----------------------~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~ 922 (1096)
.++.+..++|.+++.+ .++|+++-..|.|.-|.+.... .
T Consensus 475 kegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv~---------------l 536 (1189)
T KOG2041|consen 475 KEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNVV---------------L 536 (1189)
T ss_pred ccccccCCCCccchhhceeeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEeccee---------------e
Confidence 2333445667677764 4689999999999999888754 1
Q ss_pred eecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcc---cceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCc
Q 001343 923 IHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDAS---KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN 998 (1096)
Q Consensus 923 ~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~ 998 (1096)
.+...-. ..+.++++......+|. ..-|.+.+.|+. +|..+.-+.... ...|+.+.|..|...++.--+...
T Consensus 537 ~n~y~~n--~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~Wa~dNp~llAlmeKtr 612 (1189)
T KOG2041|consen 537 TNSYPVN--PSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYEWAQDNPNLLALMEKTR 612 (1189)
T ss_pred eeccccC--chheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhhhccCCchHHhhhhhce
Confidence 2222221 26888888888888888 777888888875 444444333332 667888899888776664445555
Q ss_pred EEEEecC
Q 001343 999 IGVFDAD 1005 (1096)
Q Consensus 999 i~vwd~~ 1005 (1096)
++|++-.
T Consensus 613 myifrgn 619 (1189)
T KOG2041|consen 613 MYIFRGN 619 (1189)
T ss_pred EEEecCc
Confidence 6666643
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-12 Score=146.96 Aligned_cols=186 Identities=19% Similarity=0.277 Sum_probs=148.7
Q ss_pred CCceeecCCCceeeecCCCCcceEEeecCCCce-----EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeec
Q 001343 315 AEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTV-----ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWD 389 (1096)
Q Consensus 315 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~h~~~V-----~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~ 389 (1096)
.+.++.....+.+|..+.........+.+.... .-+-++++.- ++++|+.-+.|.+|+.. .....
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~-~dn~p-------- 168 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPH-EDNKP-------- 168 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEE-EEEeccccccEEEEecc-ccCCc--------
Confidence 444555555555777777777777777766543 2334566665 69999999999999987 21110
Q ss_pred ccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEE
Q 001343 390 MAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVV 469 (1096)
Q Consensus 390 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~ 469 (1096)
..+.||.+.|.++.|+-||+++++++.|.++++|++++++.... +.-+|...|+.++|.|. .++
T Consensus 169 ----------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~ 232 (967)
T KOG0974|consen 169 ----------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RII 232 (967)
T ss_pred ----------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc--ccccccceeEEEEeccc----eeE
Confidence 13889999999999999999999999999999999999877663 45689999999999988 599
Q ss_pred EEeCCCcEEEEEcCCceEEEeeCCCC-CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC
Q 001343 470 TCGDDKLIKVWELSGRKLFNFEGHEA-PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1096)
Q Consensus 470 s~s~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (1096)
|++.|.+.++|+.++..+..+.+|.. .|+.++..+ +...+++++.||.+++|++...
T Consensus 233 t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~--~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI--GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EeccceEEEEEecccceehhhhhhhhcceeEEEEcC--CceEEEeeccCcchhhhhhhcc
Confidence 99999999999988888889988865 488888755 4478999999999999997643
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=163.66 Aligned_cols=235 Identities=12% Similarity=0.106 Sum_probs=165.0
Q ss_pred CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCccc
Q 001343 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLR 442 (1096)
Q Consensus 366 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~ 442 (1096)
+..|.|||....... .+..|...+.+.+|||||++|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998654321 156678889999999999999987654 479999998875322
Q ss_pred cceeecccccCEEEEEEecCCCcEEEEEE-eCCCcEEEE--EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE-ECCC
Q 001343 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVW--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDG 518 (1096)
Q Consensus 443 ~~~~l~~h~~~v~~l~~s~d~~~~~l~s~-s~d~~i~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg 518 (1096)
+..+.+| ...++|+|||+ .|+.+ +.+|.+.|| |..+..+..+..+...+....|+| ||..|+.+ ..+|
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 1123344 44689999999 56554 468876666 545555667777777788889977 56666654 4678
Q ss_pred eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC
Q 001343 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1096)
Q Consensus 519 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1096)
..++|+++..........+.. ....|+|||+.++..+. ..+.+||+.+++........ ......|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 899998765433222222322 45789999999988763 34667999988765433322 224577999999
Q ss_pred EEEEEEcCCeEEEEeCC--CCeEEEEeecCCCCCCccEEEEeCC
Q 001343 599 HFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 599 ~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
+|++++.++.+.+|.+. ++.....+..+.. .+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999999988888753 5777777765543 6788999984
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-13 Score=148.50 Aligned_cols=318 Identities=11% Similarity=0.155 Sum_probs=193.6
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1096)
++.|.+.|..+.+.+.++..... ....+.++|||+++++++.||.|.++|+.+++.+..+.... ...++++++||+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~DG~ 90 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSPDGK 90 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE--TTT
T ss_pred CCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcCCCC
Confidence 88999999999999999987544 34457899999999999999999999999999999987654 468899999999
Q ss_pred EEEEEE-CCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCc
Q 001343 643 LLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (1096)
Q Consensus 643 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1096)
+++++. .++.+.++|..+. +.++.+.....
T Consensus 91 ~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~------------------------------------------------ 121 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETL-EPVKTIPTGGM------------------------------------------------ 121 (369)
T ss_dssp EEEEEEEETTEEEEEETTT---EEEEEE--EE------------------------------------------------
T ss_pred EEEEEecCCCceeEeccccc-cceeecccccc------------------------------------------------
Confidence 998776 5889999998776 33333221100
Q ss_pred cCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecC-CeEEEeeccCCccCC
Q 001343 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN-GVQKLWKWHRNEQNP 800 (1096)
Q Consensus 722 ~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g~v~vw~~~~~~~~~ 800 (1096)
...+ ...++..+..+|....++..-.+ +.+.+-++...
T Consensus 122 ----------------------------------~~~~---~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~---- 160 (369)
T PF02239_consen 122 ----------------------------------PVDG---PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP---- 160 (369)
T ss_dssp -----------------------------------TTT---S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS----
T ss_pred ----------------------------------cccc---cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc----
Confidence 0000 23456677777777766665554 55554443221
Q ss_pred CCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEcccceEEEeec----CCCCC
Q 001343 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFM----SPPPA 874 (1096)
Q Consensus 801 ~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~~----~h~~~ 874 (1096)
..+...... .........|+|++++++++. ++.|-++|..+++.+..+. .|..+
T Consensus 161 ------------------~~~~~~~i~--~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~ 220 (369)
T PF02239_consen 161 ------------------KNLKVTTIK--VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGP 220 (369)
T ss_dssp ------------------SCEEEEEEE----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETT
T ss_pred ------------------cccceeeec--ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccc
Confidence 000000000 233455689999999987765 4889999999998877654 23333
Q ss_pred eeEEEEecC---------CCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcE
Q 001343 875 STFLAFHPQ---------DNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 945 (1096)
Q Consensus 875 i~~l~~s~~---------d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~ 945 (1096)
+..+ .+|. .+...++.-....+.+|+..+.+ .++.+..... . .-++.+|++++
T Consensus 221 ~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk---------------vv~~I~~~G~-g-lFi~thP~s~~ 282 (369)
T PF02239_consen 221 GANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK---------------VVKTIPTQGG-G-LFIKTHPDSRY 282 (369)
T ss_dssp EEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS---------------EEEEEE-SSS-S---EE--TT-SE
T ss_pred cccc-cCCCcceEEeeccccceecccccCCccccchhhcCe---------------EEEEEECCCC-c-ceeecCCCCcc
Confidence 3332 2231 11122111112233445444443 3444444332 4 67888999999
Q ss_pred EEEE-----ecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecC--CcEEEEecCCCceeEEEc
Q 001343 946 MLVV-----HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD--GNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 946 l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d--g~i~vwd~~~~~~~~~~~ 1014 (1096)
+.+. ..+.|.++|.++.+.+..+.... ...+..+.|++||+++.++..+ +.|.|||..+.+...++.
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~--~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGP--GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH--T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccC--CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9995 24789999999998888876432 3458999999999986655544 369999999999877765
|
... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.9e-14 Score=159.22 Aligned_cols=269 Identities=16% Similarity=0.220 Sum_probs=183.4
Q ss_pred CCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEE
Q 001343 332 DLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1096)
Q Consensus 332 ~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1096)
.+.|.++..++ |...|..++.++....+++|||.||+|+|||...-..-. ...+ ...++..-.+.+.
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVE 1102 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceE
Confidence 34567777777 999999999998874489999999999999986422110 0000 0111333577899
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEccCCCccc----cce--eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR----QHS--QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 411 ~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~----~~~--~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
++.+.+.+..+|+++.||.|++.+++-.+.-+ ... .+......|..-+|....+...++.+..-+.|..|| ..
T Consensus 1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred EEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 99999999999999999999999987621111 000 122222334444555544433688888899999999 55
Q ss_pred CceEEEee--CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcCC---CCEEEEEe
Q 001343 484 GRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSAD---GSRLFSCG 557 (1096)
Q Consensus 484 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~---~~~l~~~~ 557 (1096)
...+.+++ ...+.|++++..| .+.+++.|+..|.+.+||++-+..+..+.... .++..+...|- ....++++
T Consensus 1183 ~~~~w~lk~~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred hhhHHhhhcCccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEec
Confidence 55444443 3457799999976 55799999999999999999887777654433 36666666553 34555554
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCcc------------------ceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKK------------------SNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~------------------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
.. +.+.|.+|++.+|....++....+. ....+.+...+..+++|+.|..|+.||...
T Consensus 1261 ~~--~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1261 SS--SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cc--CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 31 4789999999998777666443110 011133334456889999999999999764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-12 Score=129.65 Aligned_cols=194 Identities=14% Similarity=0.220 Sum_probs=136.1
Q ss_pred ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC--CeEEEEEcCC
Q 001343 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDT 527 (1096)
Q Consensus 451 ~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~ 527 (1096)
...+..+.|+.+.. .|..|+.||. +++. ..-............|.-+-|+. .+++..+.+ +.+++.++..
T Consensus 5 ~~ti~~~~~Nqd~~--~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 5 KPTINFIGFNQDST--LLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred Ccceeeeeecccee--EEEccCCCce-eEEecCchHHhhcccCCCeEEEEeeccc----ceeEEEecCCCceEEEEEccc
Confidence 34567777988887 7888887775 5666 32222111111222344444432 355555544 4588998887
Q ss_pred CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC--CCCEEEEE--
Q 001343 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAV-- 603 (1096)
Q Consensus 528 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-- 603 (1096)
...+..+... ..|.++.++.+ .|+++- ...|+|||+++.+++.++......+-..+++++ .+.+++.=
T Consensus 78 ~~~ICe~~fp-t~IL~VrmNr~--RLvV~L-----ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 78 KTTICEIFFP-TSILAVRMNRK--RLVVCL-----EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred CceEEEEecC-CceEEEEEccc--eEEEEE-----cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC
Confidence 7777666544 46888888654 566665 556999999999999998766332333345554 45577763
Q ss_pred EcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc-EEEEEcCCC
Q 001343 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG-FKILANAIG 661 (1096)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~ 661 (1096)
...|.|.+||..+-+.+..+..|.+ .+-+++|+++|.+||++++.|+ ||+|.+.+|
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~--~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKG--PLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCC--ceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 2578999999999999999997766 9999999999999999999887 789999888
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.5e-15 Score=148.81 Aligned_cols=196 Identities=15% Similarity=0.189 Sum_probs=147.2
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d 427 (1096)
.+++|+++|. .+|+|+.||+++||++.+...+.. ...|...|.++.|||||+.|++-+.|
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~-------------------e~~~~~eV~DL~FS~dgk~lasig~d 207 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILE-------------------EIAHHAEVKDLDFSPDGKFLASIGAD 207 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhh-------------------hHhhcCccccceeCCCCcEEEEecCC
Confidence 8999999999 799999999999999877665543 55699999999999999999999999
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCC--CcEEEE-EEeCCCcEEEEE-c--CC-c--eEEEeeCCCCCeE
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN--KLLCVV-TCGDDKLIKVWE-L--SG-R--KLFNFEGHEAPVY 498 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~--~~~~l~-s~s~d~~i~iwd-~--~~-~--~~~~~~~~~~~v~ 498 (1096)
..+||+.++|..+..... ..-......+.|+.|+ ..++++ .-..-+.|+.|| . .+ . ..++.......|+
T Consensus 208 -~~~VW~~~~g~~~a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siS 285 (398)
T KOG0771|consen 208 -SARVWSVNTGAALARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSIS 285 (398)
T ss_pred -ceEEEEeccCchhhhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcce
Confidence 999999999966654321 2345567788898877 122333 334446677766 1 12 1 1122222334689
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
+++++. +|++++.|+.||.|-|++..+.+... ....|...|+.+.|+||.+++++.+. +....+..+
T Consensus 286 sl~VS~--dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs----~~~~~v~~l 353 (398)
T KOG0771|consen 286 SLAVSD--DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS----DNEAAVTKL 353 (398)
T ss_pred eEEEcC--CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc----CCceeEEEE
Confidence 999865 78999999999999999988777665 44567889999999999999998765 555555443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.7e-13 Score=144.52 Aligned_cols=333 Identities=12% Similarity=0.093 Sum_probs=197.1
Q ss_pred cEE-EEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccc
Q 001343 509 QFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587 (1096)
Q Consensus 509 ~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 587 (1096)
+++ ++-..+|.|.+.|..+.+.+..+......-..+.++|||+++++++. ++.|.++|+.+++.++++.... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--N 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--C
Confidence 344 45567899999999999888888776555566889999999999875 8899999999999999987654 3
Q ss_pred eEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCC-----CCCccEEEEeCCCCEEEEEECC-CcEEEEEcCC
Q 001343 588 NGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG-----LPNLPRLRFSKEGNLLAVTTAD-NGFKILANAI 660 (1096)
Q Consensus 588 i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~ 660 (1096)
...++++++|++++++. .++.+.++|..+.+.++.+..... ...+..+..+|....++..-.| +.|.+.|..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 56699999999998876 789999999999999988765422 2256677778877755555544 6666656533
Q ss_pred CccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccc
Q 001343 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKP 740 (1096)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~i 740 (1096)
..... +
T Consensus 160 ~~~~~--------------------------------------------------------------------------~ 165 (369)
T PF02239_consen 160 PKNLK--------------------------------------------------------------------------V 165 (369)
T ss_dssp SSCEE--------------------------------------------------------------------------E
T ss_pred ccccc--------------------------------------------------------------------------e
Confidence 20000 0
Q ss_pred eeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCccccccCccc
Q 001343 741 WQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 819 (1096)
Q Consensus 741 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~ 819 (1096)
..+. .........|+|++++++++.. ++.+-+++..... .. ..+..|+
T Consensus 166 ------------~~i~------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k------~v-------~~i~~g~ 214 (369)
T PF02239_consen 166 ------------TTIK------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK------LV-------ALIDTGK 214 (369)
T ss_dssp ------------EEEE--------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE------EE-------EEEE-SS
T ss_pred ------------eeec------ccccccccccCcccceeeecccccceeEEEeeccce------EE-------EEeeccc
Confidence 0000 2223446678888887766543 5677777754321 11 1111121
Q ss_pred cccc-cccCCCcCCCeeeeeecCCCcEE-EEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEe----eC
Q 001343 820 LMAN-DVAGVNLEEAVPCIALSKNDSYV-MSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG----TE 893 (1096)
Q Consensus 820 ~~~~-~~~g~~~~~~v~~l~~s~dg~~l-a~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~----~~ 893 (1096)
.... ...+..|...-.--+.+..+... ...+.+.+.+||..+.+.++++....+. ..+.-+| +++++.+. ..
T Consensus 215 ~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~ 292 (369)
T PF02239_consen 215 KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPD 292 (369)
T ss_dssp SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SS
T ss_pred cccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCC
Confidence 1100 00000022110111122333333 2233466778999999999999877666 7889999 89999887 45
Q ss_pred CCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE---EecceEEEEEcccceeccccc
Q 001343 894 DSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV---VHETQLAIYDASKMERIRQWT 969 (1096)
Q Consensus 894 dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~---~~d~~i~iwd~~~~~~~~~~~ 969 (1096)
.++|.++|..+.+ .+..+.......+..+.|++||+.+.. ..++.|.|||..+.+.+..+.
T Consensus 293 ~~~v~viD~~tl~---------------~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 293 ADTVQVIDKKTLK---------------VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HT-EEEEECCGTE---------------EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CceEEEEECcCcc---------------eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 5889999998876 111211100014789999999998777 234589999999999877775
|
... |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-14 Score=134.46 Aligned_cols=259 Identities=13% Similarity=0.203 Sum_probs=182.4
Q ss_pred eeecCCCCcceEE--eecCCCceEEEEEcCCCC----cEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccc
Q 001343 327 TWSLDDLPRTVAV--SLHQGSTVISMDFHPSHQ----TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1096)
Q Consensus 327 ~~~~~~~~~~~~~--~l~h~~~V~~v~fsp~g~----~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1096)
+-.++...++.+. ++.|.-+++.+.|.|+.. .+|||. +..+++|.+...+...... ..+...
T Consensus 77 iv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~----------~~L~~~ 144 (364)
T KOG0290|consen 77 IVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQ----------SVLNNN 144 (364)
T ss_pred EEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehh----------hhhccC
Confidence 3444444444443 367999999999999863 367764 5689999997533211100 001111
Q ss_pred ccccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 401 IFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.-..+.+++++..|+. |-++|.+++-|.+..|||++++........+.+|...|..++|...+.. .++++|.||+|++
T Consensus 145 kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRm 223 (364)
T KOG0290|consen 145 KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRM 223 (364)
T ss_pred cccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEE
Confidence 2344678999999998 7889999999999999999997442222257899999999999997777 8999999999999
Q ss_pred EE-cCCc---eEEEeeCCCCCeEEEEeeecCCCcEEEEEECC-CeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCC-CE
Q 001343 480 WE-LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADG-SR 552 (1096)
Q Consensus 480 wd-~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~-~~ 552 (1096)
+| ..-+ .++.-.....+...++|++. |-+++++-..| ..|.|.|++.... +..+..|...|+.++|.|.. ..
T Consensus 224 FDLR~leHSTIIYE~p~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 224 FDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred EEecccccceEEecCCCCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCce
Confidence 99 3322 22222223567888888765 45677776655 5688999987554 55889999999999999965 56
Q ss_pred EEEEeeccCCCCeEEEEeCCCCee------eEEEcCcCccceEEEEEeC-CCCEEEEEEc
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTI------KRTYAGFRKKSNGVVQFDT-TQNHFLAVGE 605 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 605 (1096)
+++++. |....+||+...-. +-.+. .+..|+.+.|++ .+.+++.+..
T Consensus 303 ictaGD----D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 303 ICTAGD----DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred eeecCC----cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEec
Confidence 778876 89999999875322 22222 223678899986 4566766654
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.1e-15 Score=139.81 Aligned_cols=171 Identities=18% Similarity=0.228 Sum_probs=136.7
Q ss_pred cchHHHHHHHHHHHHHcChHHHHHHHHHhhCCCcc---------HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhH
Q 001343 3 SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFN---------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIF 73 (1096)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~ 73 (1096)
...+|+.|||++||...||.++|..+.+|+|+... ...+|.+|..|+.++|+..+.++.+.--+.... +.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~-l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE-LF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh-HH
Confidence 35789999999999999999999999999999872 467999999999999999999984433333233 89
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-chHHHHHHHHHHHhhcc
Q 001343 74 FEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-TKTARGIMLIELKKLIE 152 (1096)
Q Consensus 74 ~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~r~~l~~~l~~~i~ 152 (1096)
|.|++|+++|||+.++.++|+.|+|.++.|+...+++.++.|...|++..++..+..+...- ....|+++++.++..|-
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL 182 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAIL 182 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888899999999998877764333221101 35668999999998885
Q ss_pred cCccccccccCCCCCchHHHHHHHHHHHHH
Q 001343 153 ANPLFRDKLAFPTLKSSRLRTLINQSLNWQ 182 (1096)
Q Consensus 153 ~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q 182 (1096)
...-. -...+|..|++...+.|
T Consensus 183 ~~~~~--------~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 183 ASQEH--------ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHhcc--------cccchHHHHHHHHHHHH
Confidence 53220 11347888887766666
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-14 Score=146.57 Aligned_cols=208 Identities=15% Similarity=0.176 Sum_probs=148.7
Q ss_pred cCCCcEEEEec-CCeEEEEEcccceEEEeec----CCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccce--------
Q 001343 840 SKNDSYVMSAT-GGKISLFNMMTFKVMTTFM----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-------- 906 (1096)
Q Consensus 840 s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~----~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~-------- 906 (1096)
.+.+--|..|- -|.|.+.|....+..+.+. -....++++.|-|.+...++++-.+|.+.+||..--.
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45665556666 5889888875532222111 1236899999999666677778889999999764211
Q ss_pred ----eeeeeccccccccc-eeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceE
Q 001343 907 ----LCVWSIDTWEKRKS-VTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISC 980 (1096)
Q Consensus 907 ----~~~w~~~~~~~~~~-~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~ 980 (1096)
.-.+.+..+..+.. .++....--. +.|...+|||||++||+ +.||.++|+|..+.+++..+..- -+...|
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~-g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY---FGGLLC 337 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGE-GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY---FGGLLC 337 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEecc-ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh---ccceEE
Confidence 00111111111111 1222221111 38899999999999999 99999999999999987777643 788999
Q ss_pred EEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCC--------------------
Q 001343 981 AVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL-------------------- 1040 (1096)
Q Consensus 981 l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~-------------------- 1040 (1096)
++|||||+||++|++|.-|.||.+...++.++-. + |.++|. +|+|.|=
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-------G---HkSWVs--~VaFDpytt~~ee~~~~~~~~~~~~~~ 405 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-------G---HKSWVS--VVAFDPYTTSTEEWNNFSGMDSTFSDV 405 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEecc-------c---ccccee--eEeecccccccccccccccccccccch
Confidence 9999999999999999999999999998877644 3 999999 6888720
Q ss_pred --------------C-------------CceEEEEeeCCcEEEEccCCCC
Q 001343 1041 --------------E-------------PNQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1041 --------------d-------------~~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
+ .-+|.+.++|-.+.+||+....
T Consensus 406 ~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 406 AHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred hcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 0 1257788899999999998865
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-12 Score=142.51 Aligned_cols=277 Identities=14% Similarity=0.123 Sum_probs=191.2
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC--CCCEEEEEEcCCCCEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWSPDGNYV 421 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~spd~~~l 421 (1096)
-.++.+.++-. +|+|| | ..-.|.+||+..+..+.. +. +.+.+..| .+.+.+ .+.++
T Consensus 7 ~~~l~~~~~~~--~~lla-g-~gp~i~~yd~~s~~li~~--~~-----------~~~~~~~H~~e~~~~l-----~~~~~ 64 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLA-G-SGPEILVYDLSSGCLIRH--LI-----------QSKILEVHRGEGKVKL-----LSGKI 64 (967)
T ss_pred cccccchhhcc--ceeee-c-CCCceEEeeCCchhHhhh--hh-----------hhccccccccccccee-----ccceE
Confidence 34555666555 44443 3 566899999999887642 11 11123344 111111 23455
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE--
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY-- 498 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~-- 498 (1096)
+++..-+.+..=+.... .+..-.+.|....+..+.+ .++..+.++.+.+|| ..+..+.... +.....
T Consensus 65 v~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~ 134 (967)
T KOG0974|consen 65 VTCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLY 134 (967)
T ss_pred EEEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcC-CCceEEEE
Confidence 55544434333222211 1122334455566666677 688888899999999 6666555544 333222
Q ss_pred -EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 499 -SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 499 -~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
++-+-.+.+.-++++|+.-+.|.+|+.........+.+|.+.|.++.++.||+++++++. |..+++|++.+.+..
T Consensus 135 ~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 135 SSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVL 210 (967)
T ss_pred eEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----Ccceeeeeccccccc
Confidence 222222345568999999999999998855555568899999999999999999999997 999999999998877
Q ss_pred E-EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 578 R-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 578 ~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
. +.-+|.. .+..++|.|+ .++++++|.+.++|+.+ +..+..+..|... .+..++..++...+++++.|+.+++|
T Consensus 211 ~~~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~-~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 211 GCTGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGK-GIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred Ccccccccc-eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhc-ceeEEEEcCCceEEEeeccCcchhhh
Confidence 7 6667777 7778889887 99999999999999764 4444466666543 78999999999999999999999999
Q ss_pred EcCCC
Q 001343 657 ANAIG 661 (1096)
Q Consensus 657 d~~~~ 661 (1096)
++...
T Consensus 286 ~l~~r 290 (967)
T KOG0974|consen 286 DLNGR 290 (967)
T ss_pred hhhcc
Confidence 98654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=148.31 Aligned_cols=324 Identities=14% Similarity=0.153 Sum_probs=222.5
Q ss_pred eEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC--CCEEEEEEcCCeE
Q 001343 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQI 609 (1096)
Q Consensus 532 ~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i 609 (1096)
..+..|.+.|..+.|+..|..+++++. +..+.+||...++....|...+...+....|-|. ...+++++.||.+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSD----D~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSD----DLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCc----cceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 356788899999999999999999997 9999999999988877776443335555556663 3678999999999
Q ss_pred EEEeCCC-CeEEEEeecCCCCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeec
Q 001343 610 KFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1096)
Q Consensus 610 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 687 (1096)
++=.+.. +....+.....+.+.|..++.-|+. ..|.+++.|+.+.-+|+..+...........++..+.....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9988654 4444344444555689999999955 6788999999999999877632211111111111122233444444
Q ss_pred CCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEE--EcCCC--CCC
Q 001343 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV--TMPES--TDT 763 (1096)
Q Consensus 688 ~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~--~~~ 763 (1096)
... ..+++++.|..+++||.........+..+ ..|.. ...
T Consensus 292 ~nt------------------------------------~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 292 RNT------------------------------------NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred CCc------------------------------------cccccCChhhhhhhhcccchhhccccchhhhcCCccccccC
Confidence 332 25678888888999987643222111100 01110 014
Q ss_pred cccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeee-cCC
Q 001343 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL-SKN 842 (1096)
Q Consensus 764 ~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~-s~d 842 (1096)
.-.|++++|+.++..++++..|-.|+++.-..+.. ....+..+ . ....+..+.|......|..+-| -|.
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G----~~p~~~s~-----~-~~~~k~vYKGHrN~~TVKgVNFfGPr 405 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG----SEPDPSSP-----R-EQYVKRVYKGHRNSRTVKGVNFFGPR 405 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccC----CCCCCCcc-----h-hhccchhhcccccccccceeeeccCc
Confidence 45799999999998899999999999985433221 10000000 0 1223334667222345777765 578
Q ss_pred CcEEEEecC-CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccce
Q 001343 843 DSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 843 g~~la~~~d-g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~ 906 (1096)
..|+++|+| |.|.||+-.+++.++-+++...-|+||.-+| --.+||+.+-|..|+||.-.+.+
T Consensus 406 sEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred cceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 899999998 9999999999999999998888999999998 77799999999999999775444
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-10 Score=118.10 Aligned_cols=415 Identities=12% Similarity=0.113 Sum_probs=234.9
Q ss_pred CCceeecCCCceeeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEE----E--eCCCeEEEEecCCCCeeecccceee
Q 001343 315 AEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV----G--SSNGEITLWELAMRDRLVSKPFKIW 388 (1096)
Q Consensus 315 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llas----g--~~dg~I~iwd~~~~~~~~~~~~~~~ 388 (1096)
.+.+.|....+ +|..+...++..+...|-+-|+.-.|+|+|+.+..+ | ...+.+.+.+.+.|+..+.
T Consensus 50 GD~IiFt~~Dd-lWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi------ 122 (668)
T COG4946 50 GDRIIFTCCDD-LWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI------ 122 (668)
T ss_pred CcEEEEEechH-HHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE------
Confidence 46677776555 899998889888888899999999999999964332 1 2345677778788876542
Q ss_pred cccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCe----EEEEEccCCCc-cccceeecccccCEEEEEEecCC
Q 001343 389 DMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL----IQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPN 463 (1096)
Q Consensus 389 ~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~----i~vwd~~~~~~-~~~~~~l~~h~~~v~~l~~s~d~ 463 (1096)
..+ | ..--.-..|+|||+.|++...-.- -.+|.+..... .. .-.-++.+.+.+- ||
T Consensus 123 -----------Tyf-G-r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e-----~LnlGpathiv~~-dg 183 (668)
T COG4946 123 -----------TYF-G-RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE-----PLNLGPATHIVIK-DG 183 (668)
T ss_pred -----------EEe-c-cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee-----eccCCceeeEEEe-CC
Confidence 012 2 111223579999999987754322 22333332111 11 1123445555553 33
Q ss_pred CcEEEEEEeCCC------------cEEEEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCC
Q 001343 464 KLLCVVTCGDDK------------LIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG 529 (1096)
Q Consensus 464 ~~~~l~s~s~d~------------~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 529 (1096)
. ++.|-.-- .=++|- ..|+....+-.-.+.|++-.+.. + ...+....||.=.+|..+-..
T Consensus 184 ~---ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~--~-RvYFlsD~eG~GnlYSvdldG 257 (668)
T COG4946 184 I---IVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVG--E-RVYFLSDHEGVGNLYSVDLDG 257 (668)
T ss_pred E---EEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEc--c-eEEEEecccCccceEEeccCC
Confidence 2 33332111 124555 33333333333333343332211 1 222233444444444433222
Q ss_pred eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC---c--Cccc--eEE---E-EEeC-CC
Q 001343 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F--RKKS--NGV---V-QFDT-TQ 597 (1096)
Q Consensus 530 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~--~~~~--i~~---~-~~~~-~~ 597 (1096)
.-......-....+=..+.||+.++... .|.|+++|..+.+..+.--+ . .... +.- + .|++ +|
T Consensus 258 kDlrrHTnFtdYY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~G 332 (668)
T COG4946 258 KDLRRHTNFTDYYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNG 332 (668)
T ss_pred chhhhcCCchhccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCC
Confidence 1111111111233344567999988764 77899999987665433211 1 0000 000 1 1222 56
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCC-cEEEEEcCCCccccccccCCCcccc
Q 001343 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEAL 676 (1096)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1096)
++++..+. |+..+.+...+-.++.-. ...|.-..+..+++-++.|..|| .+-|+|..++.
T Consensus 333 d~ia~VSR-GkaFi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-------------- 393 (668)
T COG4946 333 DYIALVSR-GKAFIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-------------- 393 (668)
T ss_pred cEEEEEec-CcEEEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCce--------------
Confidence 67766664 677777766555444322 22466666666777777888877 67777776551
Q ss_pred cCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEE
Q 001343 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (1096)
Q Consensus 677 ~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 756 (1096)
.. .
T Consensus 394 ---------------------------------------------------------------------------~k--r 396 (668)
T COG4946 394 ---------------------------------------------------------------------------VK--R 396 (668)
T ss_pred ---------------------------------------------------------------------------EE--E
Confidence 00 1
Q ss_pred cCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeee
Q 001343 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1096)
Q Consensus 757 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~ 836 (1096)
+.+ .-+.|.++..+++|+.++++.....+.+.+++. |....+.- ...+-|+.
T Consensus 397 ~e~---~lg~I~av~vs~dGK~~vvaNdr~el~vididn----------------------gnv~~idk---S~~~lItd 448 (668)
T COG4946 397 IEK---DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN----------------------GNVRLIDK---SEYGLITD 448 (668)
T ss_pred eeC---CccceEEEEEcCCCcEEEEEcCceEEEEEEecC----------------------CCeeEecc---cccceeEE
Confidence 111 345677888889998777777666776666533 22111111 14667999
Q ss_pred eeecCCCcEEEEec-CC----eEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEee
Q 001343 837 IALSKNDSYVMSAT-GG----KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1096)
Q Consensus 837 l~~s~dg~~la~~~-dg----~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~ 892 (1096)
++|+|+++++|-+- +| .|+++|+.+++....- ...+.-.+-+|.| |+++|..-+
T Consensus 449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred EEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCC-CCcEEEEEe
Confidence 99999999999987 44 4999999887776543 3344455778999 899887654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-13 Score=143.46 Aligned_cols=285 Identities=14% Similarity=0.140 Sum_probs=211.3
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC--CCCEEEEEE
Q 001343 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAW 414 (1096)
Q Consensus 337 ~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~ 414 (1096)
++.-|.|...-+.|..+|||+|++|+|...-.|++||+.+-... |..| ...|.-.-+
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------------------FERhlDae~V~feiL 102 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------------------FERHLDAEVVDFEIL 102 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee---------------------eeecccccceeEEEe
Confidence 35557788889999999999999999999999999999875543 3334 334666666
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~ 493 (1096)
|.|-..++.-..|.+|.+-.-- |.-.. + .-...-.+++++.-.. -|..++....|+-.+ ..|+.+..|...
T Consensus 103 sDD~SK~v~L~~DR~IefHak~-G~hy~----~-RIP~~GRDm~y~~~sc--Dly~~gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKY-GRHYR----T-RIPKFGRDMKYHKPSC--DLYLVGSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred ccchhhheEeecCceeeehhhc-Ceeee----e-ecCcCCccccccCCCc--cEEEeecCcceEEEEccccccccccccc
Confidence 7776677777778887654322 11111 0 0112234555554444 245555566788888 899999999888
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC------CCC-----cEEEEEEcCCCCEEEEEeeccCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA------PGH-----WCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~-----~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+.++++..++.. .+|++|+.+|.|.+||.+.......+.. +.. .|+++.|+.+|-.+++|..
T Consensus 175 ~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---- 248 (703)
T KOG2321|consen 175 SGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---- 248 (703)
T ss_pred cccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----
Confidence 8999999987643 6899999999999999987766554432 222 5999999999999999987
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC--CCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
.|.+.|||+++.+++..-.....-+|..+.|.+. ++.+++. ....++|||-.+|+....+.... .++.+++-|+
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~ 324 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS---DLNDFCFVPG 324 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC---CcCceeeecC
Confidence 9999999999988876655444447777888765 3444444 45789999999999988887543 5899999999
Q ss_pred CCEEEEEECCCcEEEEEcCC
Q 001343 641 GNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd~~~ 660 (1096)
+.+++++-.++.+..|=+..
T Consensus 325 sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CceEEEecCCCcceeEEccc
Confidence 99999999988887776543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-13 Score=154.76 Aligned_cols=217 Identities=15% Similarity=0.159 Sum_probs=146.9
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEeCC---CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 340 SLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 340 ~l~h~~~V~~v~fsp~g~~llasg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
...|...|.+.+|||||++ ||..+.+ ..|.+||+.+++.... ..+.+| ..+++|+|
T Consensus 199 lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l-----------------~~~~g~---~~~~~wSP 257 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVV-----------------ASFRGH---NGAPAFSP 257 (429)
T ss_pred eccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEE-----------------ecCCCc---cCceeECC
Confidence 3458889999999999995 5555433 4799999988764321 012333 34689999
Q ss_pred CCCEEEEEE-CCCeEEEE--EccCCCccccceeecccccCEEEEEEecCCCcEEEEE-EeCCCcEEEEE--cCCceEEEe
Q 001343 417 DGNYVGVAF-TKHLIQLY--SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVWE--LSGRKLFNF 490 (1096)
Q Consensus 417 d~~~l~s~~-~dg~i~vw--d~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s-~s~d~~i~iwd--~~~~~~~~~ 490 (1096)
||++|+.++ .+|.+.|| |+.+++. . .+..+...+....|+|||+ .|+. +..++...||+ ..+.....+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~--~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQ--SILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCeEEe
Confidence 999998765 57766555 5555543 2 3566777889999999999 4554 44678888887 334433333
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
.+.. ....|+| +|+.|+.++.++. .+||+.++........ ....++.|+|||++++.++. ++...+|+
T Consensus 332 -~~~~--~~~~~Sp--DG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~----~g~~~~l~ 399 (429)
T PRK01742 332 -GGRG--YSAQISA--DGKTLVMINGDNV-VKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST----QGLGKVLQ 399 (429)
T ss_pred -cCCC--CCccCCC--CCCEEEEEcCCCE-EEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc----CCCceEEE
Confidence 3433 4456755 6788888877664 4599887765432222 23456789999999999876 55556565
Q ss_pred C--CCCeeeEEEcCcCccceEEEEEeCC
Q 001343 571 E--SEGTIKRTYAGFRKKSNGVVQFDTT 596 (1096)
Q Consensus 571 ~--~~~~~~~~~~~~~~~~i~~~~~~~~ 596 (1096)
+ .+|+.++.+..+.. .+...+|+|-
T Consensus 400 ~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 400 LVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred EEECCCCceEEccCCCC-CCCCcccCCC
Confidence 4 35777888877665 5667888874
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-09 Score=127.54 Aligned_cols=421 Identities=9% Similarity=0.090 Sum_probs=246.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEE----EccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLY----SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vw----d~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
..+.|.++.+-++...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. .|+..+.++++.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444432 22 2334567899999999999 77777778888775
Q ss_pred EcCCceEEE------------------------eeCCCC------------------Ce----EEEEeeecCCCcEEEEE
Q 001343 481 ELSGRKLFN------------------------FEGHEA------------------PV----YSICPHHKENIQFIFST 514 (1096)
Q Consensus 481 d~~~~~~~~------------------------~~~~~~------------------~v----~~~~~~~~~~~~~l~s~ 514 (1096)
+.+..++.. |.|..+ .+ ..+.++..+||.++++.
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 533222211 111100 01 22334447799999988
Q ss_pred EC---C---CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC---cCc
Q 001343 515 AI---D---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---FRK 585 (1096)
Q Consensus 515 ~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~~~ 585 (1096)
+. . +.+|||+-+ +........-.+--.+++|-|.|+++++... ..+...|.+|. ++|-....|.- ...
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence 75 2 579999754 3222222222334467899999999998875 23345666776 44444444433 233
Q ss_pred cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE--EEeecCCCCCCccEEEEeC-CCCEEEEEECCCcEEEEEcCCCc
Q 001343 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL--TSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 586 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
..+..+.|++++..|+....|. |.+|...+...- +.+..... ..+..+.|+| +...|...+.+|.+..++..-..
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 4788899999999999987665 999999886543 33332222 2455699999 44667777777888776653210
Q ss_pred cccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCcccee
Q 001343 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1096)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~ 742 (1096)
..-...... -.++..--||..+ .+-.
T Consensus 383 ~~s~~~~~~--------D~g~vaVIDG~~l----------------------------------------------llTp 408 (928)
T PF04762_consen 383 SRSPGSSPN--------DNGTVAVIDGNKL----------------------------------------------LLTP 408 (928)
T ss_pred EecCCCCcc--------CceEEEEEeCCeE----------------------------------------------EEec
Confidence 000000000 0012222333332 2211
Q ss_pred eeee--ecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcccc
Q 001343 743 LAEI--VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (1096)
Q Consensus 743 ~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~ 820 (1096)
+... .++-....+.+ ...|.+++|++++..+++...||.+.+|.++............ .+.......
T Consensus 409 f~~a~VPPPMs~~~l~~------~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 477 (928)
T PF04762_consen 409 FRRAVVPPPMSSYELEL------PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKL-----LSSISLDSM 477 (928)
T ss_pred ccccCCCchHhceEEcC------CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcch-----hhhcccccc
Confidence 1111 11223334443 4589999999999889999999999999976543221100000 000000000
Q ss_pred ccccccCCCcCCCeeeeeecCCCcEEEEecC----CeEEEEEcccce---EEEeecCCCCCeeEEEEecCCCcEEEEeeC
Q 001343 821 MANDVAGVNLEEAVPCIALSKNDSYVMSATG----GKISLFNMMTFK---VMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1096)
Q Consensus 821 ~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d----g~v~iwd~~~~~---~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~ 893 (1096)
...... .....+..++|..++.+++.... ..+.++++...+ .+.....-.+.+..+...+ +...++.-..
T Consensus 478 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~ 554 (928)
T PF04762_consen 478 DISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTN 554 (928)
T ss_pred cccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEEC
Confidence 000000 12456788888888877776663 458888874332 2333333344555555555 4445777777
Q ss_pred CCeEEEEeecc
Q 001343 894 DSTIHIYNVRV 904 (1096)
Q Consensus 894 dg~i~iw~~~~ 904 (1096)
||.+...+...
T Consensus 555 ~G~v~~~~~~~ 565 (928)
T PF04762_consen 555 DGKVFQLSSDG 565 (928)
T ss_pred CCEEEEeecCC
Confidence 88877555444
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-13 Score=131.10 Aligned_cols=234 Identities=18% Similarity=0.190 Sum_probs=180.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
-..+|+|.+|++|+..+|++.....|.||....++......++..|...|++++|+|..+ .|++|+.|..-++|. ..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 356899999999999999999999999999998886777778999999999999999998 799999999999999 34
Q ss_pred Cc---eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee----EEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 484 GR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 484 ~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
+. +.-.+..+....+++.|+|. ++.+++|+.-..|.+|-++....-. .-......|.++.|+|++-.+++|
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~--enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPK--ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCc--CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 43 34456668889999999885 4689999999999999877544332 223445579999999999999999
Q ss_pred eeccCCCCeEEEEeCC-----C-------------CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 557 GTSKDGDSFLVEWNES-----E-------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~-----~-------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
+. |+..+++..- . |+++..+. ....-+..+.|+|+|+.|+-.+.|..+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 88 8888887531 0 22333333 223378889999999999999999999999987654
Q ss_pred -EEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 619 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.+....... -+..++.|-.+...+ .++.|
T Consensus 240 ~~v~~~~~~~--lP~ls~~~ise~~vv-~ag~~ 269 (361)
T KOG1523|consen 240 ERVQSVATAQ--LPLLSVSWISENSVV-AAGYD 269 (361)
T ss_pred hhccchhhcc--CCceeeEeecCCcee-ecCCC
Confidence 333333222 266777777655444 44444
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-14 Score=158.63 Aligned_cols=341 Identities=18% Similarity=0.217 Sum_probs=220.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCcCCCCCCccccCCCCCCCCCCCCCCCCCCCccccchh
Q 001343 169 SRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPPTAAAANAN 248 (1096)
Q Consensus 169 ~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~~~~~ 248 (1096)
-.|..|+-|.++.|+.+|++|.+..+.+|||..|+|+++... ...|.|........ +-+ +
T Consensus 1013 ~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~-~~ap~N~t~Rl~~r-el~-------~----------- 1072 (1516)
T KOG1832|consen 1013 LSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRL-LEAPLNMTGRLGTR-ELQ-------S----------- 1072 (1516)
T ss_pred CcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHH-hhcchhhhhcccch-hhc-------C-----------
Confidence 359999999999999999999999999999999999996522 22333322210000 000 0
Q ss_pred hhhhhhhcCCCCcccccccccCCCCCCCCCccccccCCCCCCCCceeecCCccHHHHHhhcCCCCCCCceeecCCCceee
Q 001343 249 ALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTW 328 (1096)
Q Consensus 249 ~~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 328 (1096)
.+.+++ -...+..-+..|++.
T Consensus 1073 --------------~y~gV~----------------------------g~~~dr~~IFSRFr~----------------- 1093 (1516)
T KOG1832|consen 1073 --------------FYSGVH----------------------------GNRRDRQFIFSRFRS----------------- 1093 (1516)
T ss_pred --------------cccccc----------------------------cCcccchhhHhhccc-----------------
Confidence 111111 111222334444444
Q ss_pred ecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCC
Q 001343 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407 (1096)
Q Consensus 329 ~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 407 (1096)
.++++ |+..-+|++||-+.+ .|++|+..|.|+++++.+|..... ..+|.+
T Consensus 1094 ---------w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~S 1144 (1516)
T KOG1832|consen 1094 ---------WRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQS 1144 (1516)
T ss_pred ---------chhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------cccccc
Confidence 44555 788999999999988 699999999999999999987653 778999
Q ss_pred CEEEEEEcCCCCEEEEEECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 408 SVSRVAWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
+|+-+.-|.||..+++.+.-. ...+|++.+.-..+ .++. .-.++.|+.... .-+.|.....+.+|| .++
T Consensus 1145 avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~--Hsf~----ed~~vkFsn~~q--~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1145 AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPR--HSFD----EDKAVKFSNSLQ--FRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred ccccccccCCcceeeeeccccCchHHHhccccccCcc--cccc----ccceeehhhhHH--HHHhcccccceEEEecccC
Confidence 999999999999888765433 46789987522221 1222 346788887655 334455556788999 888
Q ss_pred ceEEEe-eC---CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 485 RKLFNF-EG---HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 485 ~~~~~~-~~---~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.++.++ .+ ....-++..|+|. ..+++- || .+||++..+.+..+..-.. -..-.|+|.|..++..+
T Consensus 1217 ~~l~tylt~~~~~~y~~n~a~FsP~--D~LIln---dG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS--- 1285 (1516)
T KOG1832|consen 1217 SPLQTYLTDTVTSSYSNNLAHFSPC--DTLILN---DG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS--- 1285 (1516)
T ss_pred cHHHHhcCcchhhhhhccccccCCC--cceEee---Cc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec---
Confidence 877663 22 1112245667664 345443 45 4699998877665543331 22346899999998865
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE--cC---------------CeEEEEeCCCCeEEEEe
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--ED---------------SQIKFWDMDNVNILTST 623 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~~ 623 (1096)
.|||+++.+.++....-.. +.+.|+..|+.++..- .| ...+-++......+.++
T Consensus 1286 ------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi 1356 (1516)
T KOG1832|consen 1286 ------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATI 1356 (1516)
T ss_pred ------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceee
Confidence 3699999998887765433 4477888887665432 00 12344455555556666
Q ss_pred ecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 624 DAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
.... .+..++-.|...++++-.
T Consensus 1357 ~v~R---~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1357 PVDR---CLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred eccc---chhhhhcCCccceEEEEe
Confidence 5443 456666666666665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-12 Score=134.60 Aligned_cols=534 Identities=11% Similarity=0.114 Sum_probs=308.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCc------------cccceeecccccCEEEEEEecCCCcEEEEEEe
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND------------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~------------~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s 472 (1096)
......|++|+....|+|+|+.||.++|..+.+... +..-.++.||++.|.-+.|+...+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 455789999999999999999999999998865322 111136789999999999999888 799999
Q ss_pred CCCcEEEEE-cCCceEEEe--eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC
Q 001343 473 DDKLIKVWE-LSGRKLFNF--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1096)
Q Consensus 473 ~d~~i~iwd-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 549 (1096)
.+|.|.+|- ..|.-...+ ....+.|.+++|+. +|..|.....||.|.+=.++.. .+.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeeccc-eecchhcchheccceeeccc
Confidence 999999998 666543332 22455688888865 7788888888888876554422 12211222334557889999
Q ss_pred CCEEEEEeeccCCCCeEEEEeCCCCe-------eeEEEcCc---CccceEEEEEe--------CCCCEEEEEEcCCeEEE
Q 001343 550 GSRLFSCGTSKDGDSFLVEWNESEGT-------IKRTYAGF---RKKSNGVVQFD--------TTQNHFLAVGEDSQIKF 611 (1096)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~-------~~~~~~~~---~~~~i~~~~~~--------~~~~~l~~~~~dg~i~i 611 (1096)
.+.++.+-. .|.+.++|....- +.....+. ....+..+.|. |+...++++-.+|.+.+
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 998887765 7889999875321 11111110 00123334432 57788999999999988
Q ss_pred EeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeE-EeecCCC
Q 001343 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV-ALKVSAS 690 (1096)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~ 690 (1096)
..-.+......+... -.+..+.|+++|..||+++.+..- ... .. .+.+ -++|-|.
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da-----~~~--------~d--------~n~v~Fysp~G~ 299 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDA-----DEP--------TD--------SNKVHFYSPYGH 299 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccc-----cCc--------cc--------cceEEEeccchh
Confidence 866554433333322 267889999999999999876321 000 00 0011 2233333
Q ss_pred eEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEE
Q 001343 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (1096)
Q Consensus 691 ~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 770 (1096)
.+ ..+.. ....|+++
T Consensus 300 i~------------------------------------------------------------gtlkv-----pg~~It~l 314 (1189)
T KOG2041|consen 300 IV------------------------------------------------------------GTLKV-----PGSCITGL 314 (1189)
T ss_pred he------------------------------------------------------------EEEec-----CCceeeee
Confidence 22 11122 23455566
Q ss_pred EEecCCceEEEeecCCeEEEeeccCCc----------cCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeec
Q 001343 771 LYTNSAVGLLALGSNGVQKLWKWHRNE----------QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1096)
Q Consensus 771 ~~s~~~~~l~~~~~dg~v~vw~~~~~~----------~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s 840 (1096)
.|-..|-.+ +..-|+.|.+=++...- +--.+.-.....|..||..+.+...... ....+++++
T Consensus 315 sWEg~gLri-A~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V------~~~~~~a~~ 387 (1189)
T KOG2041|consen 315 SWEGTGLRI-AIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTV------THFENMAFY 387 (1189)
T ss_pred EEcCCceEE-EEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhh------cceeehhee
Confidence 665555422 22233344333321110 0000111122256678877665433222 235578887
Q ss_pred CCCcEEEEec-CCeEEEEEc-ccceEEEeec-----CC--CCCeeEE--EEecCCCcEEEEeeCCCeEEEEeecccee--
Q 001343 841 KNDSYVMSAT-GGKISLFNM-MTFKVMTTFM-----SP--PPASTFL--AFHPQDNNIIAIGTEDSTIHIYNVRVDEL-- 907 (1096)
Q Consensus 841 ~dg~~la~~~-dg~v~iwd~-~~~~~~~~~~-----~h--~~~i~~l--~~s~~d~~~l~s~~~dg~i~iw~~~~~~~-- 907 (1096)
.+--.|++-. +|.+.-++. .+...+-.+. +. ....+.+ .|.--++..++.++.+ .+.+|.....+.
T Consensus 388 ~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s 466 (1189)
T KOG2041|consen 388 REHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNS 466 (1189)
T ss_pred cccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhh
Confidence 7776777665 466655532 1111111100 00 1111111 2222156667777766 488998765440
Q ss_pred --e--------eeeccccccc-cce----eeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccC
Q 001343 908 --C--------VWSIDTWEKR-KSV----TIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQ 971 (1096)
Q Consensus 908 --~--------~w~~~~~~~~-~~~----~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~ 971 (1096)
. -+..|..... ..+ ...++.|... +|..++.| .++|.+ -..|.|.-|.+.++.......
T Consensus 467 ~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~D-pICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~-- 541 (1189)
T KOG2041|consen 467 VLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKD-PICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP-- 541 (1189)
T ss_pred hhhhhhhcccccccCCCCccchhhceeeccceeeccCCC-cceeeeec--ceEEEEEeccCceEEEEecceeeeeccc--
Confidence 0 0111110000 000 1123334333 66666654 455555 578899999998877655443
Q ss_pred CCCCCCceEEEEeeCCcEEEEEecCCcEEEEecC---CCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEE
Q 001343 972 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD---TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1048 (1096)
Q Consensus 972 ~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~ 1048 (1096)
.+..|.++++..+...+|+..--|.+.+.|++ +|..+..+.. +....|| ++.|.. |...|+.-
T Consensus 542 --~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~---------~errDVW--d~~Wa~-dNp~llAl 607 (1189)
T KOG2041|consen 542 --VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT---------SERRDVW--DYEWAQ-DNPNLLAL 607 (1189)
T ss_pred --cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh---------hhhhhhh--hhhhcc-CCchHHhh
Confidence 37789999999999999998888999998887 3332222210 0234688 578887 44444444
Q ss_pred eeCCcEEEEccCCCC
Q 001343 1049 LTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1049 ~~dg~i~vW~v~~~~ 1063 (1096)
-+...++|++-.+.+
T Consensus 608 meKtrmyifrgndpe 622 (1189)
T KOG2041|consen 608 MEKTRMYIFRGNDPE 622 (1189)
T ss_pred hhhceEEEecCcCcc
Confidence 556677777766554
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-11 Score=118.50 Aligned_cols=238 Identities=12% Similarity=0.169 Sum_probs=168.8
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeeccccc--CEEEEEEecCCCcEEEEEEeC-----CCcEEEE
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG--AVNDLAFAYPNKLLCVVTCGD-----DKLIKVW 480 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~--~v~~l~~s~d~~~~~l~s~s~-----d~~i~iw 480 (1096)
....++|+.|...+++|..+| .+||+++--+... ...-+.+ .+.-|-|- .+.+.|+-|+. -..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEE
Confidence 345599999999999887664 7899987533211 1111222 22333332 33223333332 2579999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC-CCCeeeEEeCCC--CcEEEEEEcCCCCEEEEE
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPG--HWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~l~~s~~~~~l~~~ 556 (1096)
| ...+++.++. ...+|.++.+.+ ..|++. .++.|.+|.+. +.+....+.... ....+++-+.+...|+.-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r----~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRR----DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcC----CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 9 8888888887 677899999854 345544 46889999887 444444443322 234444433343444443
Q ss_pred eeccCCCCeEEEEeCCCCee--eEEEcCcCccceEEEEEeCCCCEEEEEEcCCe-EEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 557 GTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
+. ..|.|.+-|+...+. ...+..|.. .|.+++.+-+|..+++++..|+ |+|||..+|..+..+.-......|.
T Consensus 155 g~---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 155 GF---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred CC---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 32 368999999876655 467788877 8999999999999999999886 8999999999999998766667899
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++|||++.+||++++.|++.||.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998764
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.6e-12 Score=131.53 Aligned_cols=353 Identities=13% Similarity=0.111 Sum_probs=221.6
Q ss_pred CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE-----E-----cCC
Q 001343 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-----G-----EDS 607 (1096)
Q Consensus 538 ~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~-----~dg 607 (1096)
...+...+++++|++++.+. +..+.|++..++..+.+.... ....+.|+|-+.++.+- . ...
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 33577889999999998876 778999999888654444432 56779999999988762 1 234
Q ss_pred eEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeec
Q 001343 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1096)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 687 (1096)
.+.+|++.++.....+...... -++..|+.|..+.+-. ..+.+.+|++.+... .....+...++.+.+||
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~-------~~~kl~~~~i~~f~lSp 175 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAARL-VSNEVQFYDLGSFKT-------IQHKLSVSGITMLSLSP 175 (566)
T ss_pred ceeeeeeccceehhheehhhhc--Ccccccccchhhhhhh-hcceEEEEecCCccc-------eeeeeeccceeeEEecC
Confidence 5789999996666555544332 2688898887544332 345799999876422 22222344567788888
Q ss_pred CCCe-EEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCccc
Q 001343 688 SASS-AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1096)
Q Consensus 688 ~g~~-lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1096)
.+.. .++...++ ..+.-..++||.+...........-. .....
T Consensus 176 gp~~~~vAvyvPe-------------------------------~kGaPa~vri~~~~~~~~~~~~a~ks-----FFkad 219 (566)
T KOG2315|consen 176 GPEPPFVAVYVPE-------------------------------KKGAPASVRIYKYPEEGQHQPVANKS-----FFKAD 219 (566)
T ss_pred CCCCceEEEEccC-------------------------------CCCCCcEEEEeccccccccchhhhcc-----ccccc
Confidence 7433 33433322 22333667888876311111111101 12233
Q ss_pred EEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEE
Q 001343 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1096)
Q Consensus 767 i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~l 846 (1096)
-..+.|++-|..|+..... +++....+=.|+. ++.+.+++ |....+.+. -.++|.++.|+|+|+-+
T Consensus 220 kvqm~WN~~gt~LLvLast------dVDktn~SYYGEq----~Lyll~t~-g~s~~V~L~---k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLAST------DVDKTNASYYGEQ----TLYLLATQ-GESVSVPLL---KEGPVHDVTWSPSGREF 285 (566)
T ss_pred eeEEEeccCCceEEEEEEE------eecCCCccccccc----eEEEEEec-CceEEEecC---CCCCceEEEECCCCCEE
Confidence 4467788877665443321 1111111111111 22333333 333333444 37899999999999887
Q ss_pred EEecC---CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCC---CeEEEEeeccceeeeeeccccccccc
Q 001343 847 MSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---STIHIYNVRVDELCVWSIDTWEKRKS 920 (1096)
Q Consensus 847 a~~~d---g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~d---g~i~iw~~~~~~~~~w~~~~~~~~~~ 920 (1096)
++... -++.|||+ .+..+..+ ..++-+++-|+| .|++++.++-+ |.|.|||+.+.+
T Consensus 286 ~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K-------------- 347 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRK-------------- 347 (566)
T ss_pred EEEEecccceEEEEcC-CCCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchh--------------
Confidence 77663 77999998 55666655 567778999999 89998887754 789999999866
Q ss_pred eeeecCCCCCCCCCceEEEecCCcEEEEE-------ecceEEEEEcccceeccccccCCCCCCCceEEEEee
Q 001343 921 VTIHIPAGKTPTGDTRVQFNADQVRMLVV-------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 985 (1096)
Q Consensus 921 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~ 985 (1096)
++..+... .-+-+.|+|||.+++++ -|..++||++.. ..+....- ......+.|-|
T Consensus 348 -~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG-~~l~~~~f----~sEL~qv~W~P 410 (566)
T KOG2315|consen 348 -LIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG-SLLHEKMF----KSELLQVEWRP 410 (566)
T ss_pred -hccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC-ceeehhhh----hHhHhheeeee
Confidence 44445443 45778999999999993 288899999974 43333221 22567778776
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-12 Score=125.27 Aligned_cols=285 Identities=14% Similarity=0.159 Sum_probs=185.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-CCEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGV 423 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s 423 (1096)
..+..++|++.-- -+|++..|-.|+|||-.. ..... +-......|+|++|-|. ++-|++
T Consensus 99 ~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsaselav 158 (445)
T KOG2139|consen 99 IDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASELAV 158 (445)
T ss_pred cceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCcceeee
Confidence 3578899999655 488899999999999665 22111 01123568999999995 556777
Q ss_pred EECCCeEEEEEccCCCcc-----------ccceeecccccCEEEEEEecCCCcEEEEEEeC-CCcEEEEE-cCCceEEEe
Q 001343 424 AFTKHLIQLYSYAGSNDL-----------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNF 490 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~-----------~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~~i~iwd-~~~~~~~~~ 490 (1096)
|+. +-|.+|........ ..+..-.+| .+|++|.|.+||. .+++++. |..|.||| .+|..+.-.
T Consensus 159 gCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 159 GCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccccc
Confidence 776 56889986532111 111123455 6899999999999 7787775 57899999 777665444
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
....+.+.-+.|+| |+.+|+++..|+..++|+....-.........+.|...+|+|+|++|+.... +...++-..
T Consensus 235 ~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl~ 309 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRLYSLT 309 (445)
T ss_pred ccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceEEEEe
Confidence 34556788899977 6689999999999999965543333334444558999999999998876553 122332211
Q ss_pred CC--CCe-----------eeEEE------cC--cCccceEEEEEeCCCCEEEEEEcC--------CeEEEEeCCCCeEEE
Q 001343 571 ES--EGT-----------IKRTY------AG--FRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNILT 621 (1096)
Q Consensus 571 ~~--~~~-----------~~~~~------~~--~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~ 621 (1096)
.. .+. ++..+ .+ .-.....+++|+|.|.++++.-.. +.|.+||.+..-.+.
T Consensus 310 f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve 389 (445)
T KOG2139|consen 310 FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE 389 (445)
T ss_pred ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence 11 100 00001 01 012356779999999999986543 346778776544433
Q ss_pred Eee-cCCCCCCccEEEEeC---CCCEEEEEECCCcEEEEEc
Q 001343 622 STD-AEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 622 ~~~-~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~ 658 (1096)
... +........-++|+| ++.+|.++-+.|.+.-|++
T Consensus 390 ls~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 390 LSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 321 111112346677777 6788888888888888776
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-12 Score=127.61 Aligned_cols=189 Identities=12% Similarity=0.133 Sum_probs=133.8
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCC-EEEEEeeccCCCCeEEEEeCCCC
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
.+..++|++.- ..++++..|-.|++|+-...............|++++|-|.+. .+++++ .+.|.+|.....
T Consensus 100 dlr~~aWhqH~--~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-----r~gIciW~~s~t 172 (445)
T KOG2139|consen 100 DLRGVAWHQHI--IAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-----RAGICIWSDSRT 172 (445)
T ss_pred ceeeEeechhh--hhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-----cceeEEEEcCcc
Confidence 46667787632 4578899999999998776333333333445899999999765 444444 778999986521
Q ss_pred ----e--------eeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC
Q 001343 575 ----T--------IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 575 ----~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
. ..+.++......|+++.|.+||..+++++ .|..|.|||.+++..+...... .+.+.-+.||||+
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g--lgg~slLkwSPdg 250 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG--LGGFSLLKWSPDG 250 (445)
T ss_pred cccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC--CCceeeEEEcCCC
Confidence 1 11222222234899999999999999987 6778999999998877665332 2378899999999
Q ss_pred CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCC
Q 001343 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1096)
Q Consensus 642 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~ 699 (1096)
.+|++++-|+..++|+........+-..+ .+.|+...|+|+|+.+....+..
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~lg------sgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWILG------SGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred CEEEEecccceeeeehhcccceecceecc------CCceeeeeecCCCCEEEEEEcCC
Confidence 99999999999999976544233222222 33588899999999985554433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.5e-12 Score=143.57 Aligned_cols=236 Identities=12% Similarity=0.117 Sum_probs=156.1
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC---CCeEEEEEccCCCcccc
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQ 443 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~---dg~i~vwd~~~~~~~~~ 443 (1096)
..|.+||.+.+.... +..+...+.+.+|||||+.|+..+. +..|.+|++.+++...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 378888877544321 3446678999999999999987643 3579999998875332
Q ss_pred ceeecccccCEEEEEEecCCCcEEEE-EEeCCC--cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CC
Q 001343 444 HSQIDAHVGAVNDLAFAYPNKLLCVV-TCGDDK--LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG 518 (1096)
Q Consensus 444 ~~~l~~h~~~v~~l~~s~d~~~~~l~-s~s~d~--~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg 518 (1096)
+....+.+....|+|||+ .|+ +.+.++ .|++|| .+++ +..+..+...+....|+| +|+.|+..+. +|
T Consensus 238 ---l~~~~~~~~~~~~SPDG~--~La~~~~~~g~~~I~~~d~~tg~-~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g 309 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAG 309 (429)
T ss_pred ---ccCCCCCcCCeEECCCCC--EEEEEEcCCCCcEEEEEECCCCC-EEEccCCCCCcCceEECC--CCCEEEEEeCCCC
Confidence 222333455789999999 444 334454 588899 5554 445554555677888876 6677766665 45
Q ss_pred eEEEE--EcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC
Q 001343 519 KIKAW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1096)
Q Consensus 519 ~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 596 (1096)
...+| |+.++.. ..+...........|+|||++++..+.. ++...|++||+.+++... +.... ......|+||
T Consensus 310 ~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpD 384 (429)
T PRK03629 310 RPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPN 384 (429)
T ss_pred CceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEE-eCCCC--CCCCceECCC
Confidence 55555 5554433 3333344456678999999999877642 234679999998886543 33221 2234779999
Q ss_pred CCEEEEEEcCCe---EEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 597 QNHFLAVGEDSQ---IKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 597 ~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
|+.|+.++.++. +++++++ +.....+..+.. .+...+|+|
T Consensus 385 G~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 385 GTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred CCEEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 999999887664 6777874 444555554433 678888887
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-11 Score=129.53 Aligned_cols=308 Identities=9% Similarity=0.102 Sum_probs=202.2
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...++..++|++|+ ++|.+ .+..|.|++..++..+.. .....+.++.|||-|.||.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34578899999999 67765 688999999998864432 11227899999999999976
Q ss_pred E-----ECC-----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC
Q 001343 424 A-----FTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (1096)
Q Consensus 424 ~-----~~d-----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 493 (1096)
- ..+ -.+.+|+++++.... . +..-...-++..|+.|.. +++=-..+.+.+|+..+-....-+-|
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s-~--~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS-Q--IQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh-h--eehhhhcCcccccccchh---hhhhhhcceEEEEecCCccceeeeee
Confidence 3 122 357799999943322 2 222222227999999886 44444467899999333222222336
Q ss_pred CCCeEEEEeeecCCCcEEEE-----EECCCeEEEEEcCCCCeeeEE---eCCCCcEEEEEEcCCCCEEEE-Eeec-----
Q 001343 494 EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADGSRLFS-CGTS----- 559 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~l~~-~~~~----- 559 (1096)
...|+...++|.+....+++ .+.-+.++||.+......... ..-...-..+.|++-|.-|++ ++.+
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 77789999988755555554 355678999976522211111 111113345778887775443 3222
Q ss_pred --cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEE--EEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 560 --KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 560 --~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
-.++..+++.++....... ......+|.++.|+|+++.+++ |-.-..+.|||++ +.++..+... +=+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V--~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg----pRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSV--PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG----PRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceEEE--ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC----Cccce
Confidence 2356789999888434333 3333448999999999987765 4466789999985 4555554322 45899
Q ss_pred EEeCCCCEEEEEECC---CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 636 RFSKEGNLLAVTTAD---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
-|+|.|++++.++.+ |.+.+||+.+. +++..+.... .+-+.|+|||++++++
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~~-------tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAAN-------TTVFEWSPDGEYFLTA 372 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccch-hhccccccCC-------ceEEEEcCCCcEEEEE
Confidence 999999999998864 88999999884 5555554432 2346899999988544
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=142.79 Aligned_cols=239 Identities=14% Similarity=0.159 Sum_probs=165.3
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CC
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~ 418 (1096)
.+|++-|+|++|+.+|. +|++|+.|-.+.|||....+.++. +-.||...|.|+.|-| +.
T Consensus 47 ~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNN 107 (758)
T ss_pred ccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCC
Confidence 35999999999999999 899999999999999987766653 3578999999999999 57
Q ss_pred CEEEEEECCCeEEEEEccCCC-------ccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-ceEE-
Q 001343 419 NYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLF- 488 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~- 488 (1096)
+.+++|..|..|+++|+...+ .......+..|...|..++-.|++.. .+.++++||+|+-+| ... .+-.
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcc
Confidence 789999999999999998522 12223346689999999999999965 899999999999999 431 2111
Q ss_pred --------EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-----eCCCCcEEEEE-EcCCCCEEE
Q 001343 489 --------NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-----DAPGHWCTTML-YSADGSRLF 554 (1096)
Q Consensus 489 --------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~-~s~~~~~l~ 554 (1096)
.+...--...++.++|.. ..+|++|+.|-..++||.+.......- ........++. |+|.+-
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl--- 262 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL--- 262 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---
Confidence 111222345678888874 479999999999999996432221110 00111111221 122211
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
... ++.+ .... ..++-+.|+|+|.-+++.-..-.|+++|+..++....+
T Consensus 263 -kn~----~gn~----------~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 263 -KNS----QGNL----------DRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred -cCc----cccc----------ccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 000 1101 0000 13455889999988777666668999999887765544
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-14 Score=144.13 Aligned_cols=277 Identities=15% Similarity=0.195 Sum_probs=214.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.-..+.|+.+|++ ++.|+..|.|-.+|+.+++...... -...|.++.|-.+.+++|++-
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhhh
Confidence 4577899999995 7778899999999999998775421 234688899999999999884
Q ss_pred CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeee
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~ 504 (1096)
...+.|||-.. ..+.+ +.. ...|..+.|.|.-- +|++++..|.++.-| ..|+.+..+..-.+++..++-+|
T Consensus 190 -K~y~yvYD~~G-tElHC---lk~-~~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 -KKYVYVYDNNG-TELHC---LKR-HIRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred -hceEEEecCCC-cEEee---hhh-cCchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 46899999654 44443 332 35689999999877 899999999999999 89999999988888888888877
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
.+ ..+-+|...|+|.+|.....+.+..+-.|.++|.++++.++|+++++.+. |..++|||+++...+.++....
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp~ 335 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTPH 335 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecCC
Confidence 53 58889999999999999999999999999999999999999999999998 9999999999888776665522
Q ss_pred ccceEEEEEeCCCCEEEEEEcCCeEEEEeC-CC--CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDM-DN--VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+...+++|..| +++.+....+.||.- -. +..-..+-.|.-...|..+.|.|-...|.+|...|.-.+.-...|
T Consensus 336 --~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 336 --PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred --Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 45557777554 444455568999952 22 122222223333448999999998778888877776555544444
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-12 Score=130.37 Aligned_cols=349 Identities=12% Similarity=0.084 Sum_probs=233.1
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
-++..++|||.|+ +|++. .-..|.+|.......+.. -....|..+.|||.++||.+-
T Consensus 33 ~p~~~~~~SP~G~-~l~~~-~~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~tw 89 (561)
T COG5354 33 WPVAYVSESPLGT-YLFSE-HAAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVTW 89 (561)
T ss_pred cchhheeecCcch-heehh-hccceEEccccchhheee---------------------eecCCceecccCcccceeeee
Confidence 4789999999999 57764 456799999877664432 123469999999999999986
Q ss_pred ECC---------------CeEEEEEccCCCccccceeecccccC--EE-EEEEecCCCcEEEEEEeCCCcEEEEEcCCce
Q 001343 425 FTK---------------HLIQLYSYAGSNDLRQHSQIDAHVGA--VN-DLAFAYPNKLLCVVTCGDDKLIKVWELSGRK 486 (1096)
Q Consensus 425 ~~d---------------g~i~vwd~~~~~~~~~~~~l~~h~~~--v~-~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~ 486 (1096)
+.. ..+.+||+.+|..+.. +.+...+ .+ -+.|+-+++ +++-- ....++|++.+++.
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s---f~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~t~n~ 163 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS---FNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEITDNI 163 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEee---ccccCCcccccceeeeeecch--hhhhh-ccCeEEEEecCCcc
Confidence 543 3499999999887763 4444444 55 788998887 44333 34578888853332
Q ss_pred ----EEEeeCCCCCeEEEEeeecCCCcEEEE-----EECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 487 ----LFNFEGHEAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 487 ----~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
...++ ...|....++|.+++..|+. .+.++++++|.+.....+.....-...-..+.|.+.|+++++-.
T Consensus 164 ~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 164 EEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred ccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence 12222 24577777888766666554 46788999999886666554444333445688889998877533
Q ss_pred e-------ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE--cCCeEEEEeCCCCeEEEEeecCCC
Q 001343 558 T-------SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGG 628 (1096)
Q Consensus 558 ~-------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1096)
. +.-++..++++++....+.... ...+ +|...+|.|.++.+++.+ .+-.+.++|++.. ....+...
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~-pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~-- 316 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKD-PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ-- 316 (561)
T ss_pred EEeeecccceeccceEEEEeecccccceec-cccc-cceeeeecccCCceeEEecccccceeecccccc-eEEecCCc--
Confidence 2 1124578899998744333222 3333 899999999988776644 7788999999876 44333322
Q ss_pred CCCccEEEEeCCCCEEEEEECC---CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEec
Q 001343 629 LPNLPRLRFSKEGNLLAVTTAD---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1096)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~ 705 (1096)
.=+.+.|+|.+++++.++.| |.+.+|+......+...+.+... .-+.|+|||.++........
T Consensus 317 --~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~-------s~~~wspd~qF~~~~~ts~k----- 382 (561)
T COG5354 317 --KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT-------SYCDWSPDGQFYDTDTTSEK----- 382 (561)
T ss_pred --ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc-------eEeeccCCceEEEecCCCcc-----
Confidence 33678999999999998865 77999998777555545554432 23578888888733322110
Q ss_pred cCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecC
Q 001343 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN 785 (1096)
Q Consensus 706 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 785 (1096)
--.|..|++|++.. . .-...+.+.|.|.|++..+.+..
T Consensus 383 --------------------------~~~Dn~i~l~~v~g----~------------~~fel~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 383 --------------------------LRVDNSIKLWDVYG----A------------KVFELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred --------------------------cccCcceEEEEecC----c------------hhhhhhhccccCCcccceeeccC
Confidence 12368899999862 1 11256678888888866666655
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-12 Score=135.12 Aligned_cols=275 Identities=11% Similarity=0.115 Sum_probs=183.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE-----cCCCCE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-----SPDGNY 420 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----spd~~~ 420 (1096)
.+....++-.|++++.- ....+.+|+...+..+.. ++....+.+. .-.|=+| .|++--
T Consensus 125 ~~~~~~~~~~gd~lcFn--vg~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFN--VGRELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEe--cCCeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCcc
Confidence 46667777778864442 456788999876444321 1122223322 2233333 456777
Q ss_pred EEEEECCCeEEEEEccCCCccccceeec--ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~--~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~ 498 (1096)
|.+|-.-|.|.+.|.... .+..+.... -.+..|+|+.|-|.+.. .++.+-.+|.++++|.. +....+
T Consensus 188 llIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~---------~~~~~t 256 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE---------IVCGAT 256 (636)
T ss_pred eEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc---------ccccCC
Confidence 888988899999987662 222211111 23478999999998876 56667789999999841 111111
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
...+..-.++..+.....-+ ..+...+..+......|...+|+|||++|++.+. |+.++|+|..+.+++.
T Consensus 257 ~p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELLG 326 (636)
T ss_pred CCcccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHHH
Confidence 11221122223332221100 0111333344444558999999999999999997 9999999999988887
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC------------------
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE------------------ 640 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------ 640 (1096)
.++..-+ ...|++|+|||++|++|++|--|.||.+..++.+..-.+|. ..|..++|.|-
T Consensus 327 ~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHk--SWVs~VaFDpytt~~ee~~~~~~~~~~~~ 403 (636)
T KOG2394|consen 327 VMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHK--SWVSVVAFDPYTTSTEEWNNFSGMDSTFS 403 (636)
T ss_pred HHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccc--cceeeEeeccccccccccccccccccccc
Confidence 7776666 78899999999999999999999999999988887666654 48999999830
Q ss_pred ------------------------------CCEEEEEECCCcEEEEEcCCC
Q 001343 641 ------------------------------GNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 641 ------------------------------~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
...+.+.+.|..+.+||+...
T Consensus 404 ~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 404 DVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred chhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 125677888999999999765
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-12 Score=143.59 Aligned_cols=238 Identities=15% Similarity=0.131 Sum_probs=157.0
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCcccc
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQ 443 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~ 443 (1096)
..|.+||...+.... +..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 468899986443221 45577789999999999999987643 479999998876432
Q ss_pred ceeecccccCEEEEEEecCCCcEEEEEEeCCC--cEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE-CCCe-
Q 001343 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK- 519 (1096)
Q Consensus 444 ~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~- 519 (1096)
+..+.+...+..|+|||+. ++++.+.++ .|++||..+..+..+..+.......+|+| ||+.|+.++ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~ 316 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRP 316 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCc
Confidence 3344555668899999994 334555555 59999944444556666665566778866 667777665 4455
Q ss_pred -EEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC
Q 001343 520 -IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1096)
Q Consensus 520 -i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1096)
|.++++.+++.. .+..........+|+|||++++.... .++...|++||+.+++......+. ......|+|+|+
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCCC---CCCCceECCCCC
Confidence 555566554433 23333344557899999999987653 223457999999888765332221 233468999999
Q ss_pred EEEEEEc---CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 599 HFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 599 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
+++..+. .+.|++++...+ ....+..+.. .+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCCC--CCCCCccCC
Confidence 9887764 346888888544 4444443322 566777776
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-12 Score=143.10 Aligned_cols=236 Identities=13% Similarity=0.074 Sum_probs=151.9
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEe--CCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|-++.-.........+...+.+.+|||||+.++.+.. .+..|.+|++.+|+... +..
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~ 240 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 240 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccC
Confidence 55555333333334457778999999999996443332 24579999998876432 111
Q ss_pred CCCCEEEEEEcCCCCEEEEE-ECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-CCcEEEE
Q 001343 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVW 480 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~~i~iw 480 (1096)
..+.+...+|||||+.|+.. +.+| .|.+||+++++..+ +..+...+....|+|||+ .|+..+. ++...+|
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVY 314 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCC--EEEEEeCCCCCceEE
Confidence 22334568999999998865 3344 58999998875432 444556788999999999 5665554 3444555
Q ss_pred --EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC---CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 481 --d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
|..+.....+..+........|+| +|++|+..+.+ ..|.+||+.++.... +.. ........|+|||+.|+.
T Consensus 315 ~~d~~~g~~~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 315 KVNINGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred EEECCCCCeEEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEE
Confidence 544444445544444556677766 66777766543 357888987765433 222 223456789999999998
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
.+.+. +...++++++ +|...+.+.++.. .+...+|+|
T Consensus 391 ~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 87522 2345788887 4555566666554 566677776
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.5e-12 Score=143.11 Aligned_cols=225 Identities=14% Similarity=0.133 Sum_probs=149.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999987643 469999999886432 3334456678999999994 334667788777
Q ss_pred EEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 479 iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
+|. ..+.....+..+........|+| ||+.|+..+. +|...+|.++.. .....+...........|+|||++++
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 776 45555666766666666778866 6677765554 567777766432 22222223333445688999999998
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC---eEEEEeCCCCeEEEEeecCCCCCC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
..+.. .+...|++||+.+++........ ......|+|+|+.|+.++.++ .+++.+. ++.....+..+.+ .
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 76642 22347999999888765433221 234578999999988877443 3666666 4555555544333 5
Q ss_pred ccEEEEeCC
Q 001343 632 LPRLRFSKE 640 (1096)
Q Consensus 632 v~~~~~s~~ 640 (1096)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 677788773
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=141.96 Aligned_cols=270 Identities=13% Similarity=0.141 Sum_probs=211.9
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
...-..+.++.+|++|+.|+..|.|-.+|+.+++....+. -...|.++.|..+.+ ++|. ...+.++|||..|.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~LHneq--~~AV-AQK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----VMETVRDVTFLHNEQ--FFAV-AQKKYVYVYDNNGT 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee----hhhhhhhhhhhcchH--HHHh-hhhceEEEecCCCc
Confidence 3456779999999999999999999999999987665332 356789999998877 5554 45789999999999
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
.++.++.|. +|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-...+-+|.. .|+
T Consensus 202 ElHClk~~~-~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRHI-RVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhcC-chhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 999998664 68889998754 57888899999999999999999888888889999999998888888876 999
Q ss_pred EEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE
Q 001343 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1096)
|.+|.....+++..+..|.+ ++.++++.++|.++++.|.|..++|||++....+.++... + ....+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~--~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H--PASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C--Ccccccccccc-cee
Confidence 99999999999999999988 9999999999999999999999999999988777666552 2 56788888665 444
Q ss_pred EEECCCcEEEEEc-CCCc-cccccccCCCcccccCcceeEEeecCCCeEEecCCC
Q 001343 646 VTTADNGFKILAN-AIGL-RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1096)
Q Consensus 646 ~~~~dg~i~iwd~-~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~ 698 (1096)
.+. ...+.||.- ..+. ........|. ..++|..+.|.|-...+-.+-..
T Consensus 350 ~~~-G~~v~iw~d~~~~s~~~~~pYm~H~---~~~~V~~l~FcP~EDvLGIGH~~ 400 (545)
T KOG1272|consen 350 LSY-GDHVQIWKDALKGSGHGETPYMNHR---CGGPVEDLRFCPYEDVLGIGHAG 400 (545)
T ss_pred eec-CCeeeeehhhhcCCCCCCcchhhhc---cCcccccceeccHHHeeeccccC
Confidence 443 347899952 2211 1111111222 23468888888887777444333
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-12 Score=142.42 Aligned_cols=246 Identities=18% Similarity=0.155 Sum_probs=155.8
Q ss_pred CceeecCCCc---eeeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeC-C--CeEEEEecCCCCeeecccceeec
Q 001343 316 EEVTYSSSRH---QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS-N--GEITLWELAMRDRLVSKPFKIWD 389 (1096)
Q Consensus 316 ~~v~~~~~~~---~~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~-d--g~I~iwd~~~~~~~~~~~~~~~~ 389 (1096)
..++|..... .+|-.+.........+.+...+.+.+|||||+. ||..+. + ..|.+||+.+++...
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~-la~~s~~~~~~~I~~~dl~~g~~~~-------- 234 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTK-LAYVSFESKKPVVYVHDLATGRRRV-------- 234 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCE-EEEEEccCCCcEEEEEECCCCCEEE--------
Confidence 4466665432 277666533333444568889999999999995 554443 2 469999999887542
Q ss_pred ccccCccccccccccCCCCEEEEEEcCCCCEEEE-EECCCeEEEEEc--cCCCccccceeecccccCEEEEEEecCCCcE
Q 001343 390 MAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV-AFTKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466 (1096)
Q Consensus 390 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s-~~~dg~i~vwd~--~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~ 466 (1096)
+....+.+.+.+|||||+.|+. .+.+|...||.+ .++. .+ .+..+.+......|+|||+
T Consensus 235 ------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~-- 296 (427)
T PRK02889 235 ------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGR-- 296 (427)
T ss_pred ------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCC--
Confidence 2223345678999999998874 566777666654 4443 23 3555666677889999999
Q ss_pred EEEEEe-CCCcEEEEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC---eEEEEEcCCCCeeeEEeCCCCc
Q 001343 467 CVVTCG-DDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHW 540 (1096)
Q Consensus 467 ~l~s~s-~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~ 540 (1096)
.|+..+ .++...+|. ..+.....+..+........|+| +|++|+..+.++ .|.+||+.+++...... ...
T Consensus 297 ~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~ 372 (427)
T PRK02889 297 SIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTR 372 (427)
T ss_pred EEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCC
Confidence 555444 456667776 34433333332233344567766 678888776554 69999998776543322 223
Q ss_pred EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 541 i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
.....|+|||+.|+..+.. .+...+++.+. ++...+.+..+.+ .+...+|+|
T Consensus 373 ~~~p~~spdg~~l~~~~~~-~g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 373 DESPSFAPNGRYILYATQQ-GGRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred ccCceECCCCCEEEEEEec-CCCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 4678999999999988753 23446777777 4555555554433 455566665
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-11 Score=140.12 Aligned_cols=222 Identities=12% Similarity=0.040 Sum_probs=151.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEC---CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc--
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~-- 476 (1096)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 5567889999999999999988764 468999999887643 24556777889999999994 3456666665
Q ss_pred EEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CC--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEE
Q 001343 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 477 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
|++||..+.....+..+........|+| ||+.|+..+. +| .|.+||+..+... .+......+....|+|||+.|
T Consensus 272 Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred EEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEE
Confidence 7777854555566766666677788876 6677776653 34 5777787655443 333334456778999999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC------CeEEEEeCCCCeEEEEeecCC
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~ 627 (1096)
+..... .+...|.+||+.++.. +.+... . .+....|+|+|+.|+..+.+ ..++++++..+.. ..+...
T Consensus 349 a~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~- 422 (435)
T PRK05137 349 AFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP- 422 (435)
T ss_pred EEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC-
Confidence 887632 2245789999865543 333321 1 35568899999998776542 3688888876554 333322
Q ss_pred CCCCccEEEEeC
Q 001343 628 GLPNLPRLRFSK 639 (1096)
Q Consensus 628 ~~~~v~~~~~s~ 639 (1096)
. .+...+|+|
T Consensus 423 ~--~~~~p~Wsp 432 (435)
T PRK05137 423 G--DASDPAWSP 432 (435)
T ss_pred C--CccCcccCC
Confidence 1 456677776
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.9e-12 Score=123.52 Aligned_cols=172 Identities=16% Similarity=0.229 Sum_probs=124.7
Q ss_pred CcCCCeeeeeecCCCcEEEEecCCeEEEEEccc-ceE--EEeecCCC-----CCeeEEEEecCCCcEEEEeeCCCeEEEE
Q 001343 829 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMT-FKV--MTTFMSPP-----PASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (1096)
Q Consensus 829 ~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~-~~~--~~~~~~h~-----~~i~~l~~s~~d~~~l~s~~~dg~i~iw 900 (1096)
+|..-|.++.+..|++.+.+++|=+|-+|++.- .+. +--++.+. .-|++..|+|...+.++..+..|+|++-
T Consensus 162 aHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred cceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 489999999999999999999999999999842 122 22233332 4588899999777888999999999999
Q ss_pred eeccceeeeeeccccccccceeeecCCCC---CC-----CCCceEEEecCCcEEEEEecceEEEEEc-ccceeccccccC
Q 001343 901 NVRVDELCVWSIDTWEKRKSVTIHIPAGK---TP-----TGDTRVQFNADQVRMLVVHETQLAIYDA-SKMERIRQWTPQ 971 (1096)
Q Consensus 901 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~-----~~v~~v~fs~dg~~l~~~~d~~i~iwd~-~~~~~~~~~~~~ 971 (1096)
|+....+|.-.... ...+... .. +.|..++||+.|+++++-.--+|++||+ ...+.+.+..-|
T Consensus 242 DmR~~aLCd~hsKl--------fEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 242 DMRQSALCDAHSKL--------FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred echhhhhhcchhhh--------hccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeeh
Confidence 99987766532111 1111111 11 5889999999999999966689999999 344443332211
Q ss_pred CC---------CCCCc---eEEEEeeCCcEEEEEecCCcEEEEecCCCc
Q 001343 972 DA---------LSAPI---SCAVYSCNSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 972 ~~---------~~~~i---~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
.. ..+.| ..++|+.++.+++||+....++||++..|.
T Consensus 314 ~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 314 EYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 10 02223 357889999999999999999999987765
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8e-12 Score=126.07 Aligned_cols=272 Identities=11% Similarity=0.132 Sum_probs=192.3
Q ss_pred CCceEEEEEcCCCCcEEEEE-eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVG-SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
...|..++|--+++.=+..+ +.|..+..+.+.......+ +|++. .......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEEE
Confidence 34677777776665323333 3566666666655544322 12222 123345566666654 34777
Q ss_pred EEECCCeEEEEEccCCCcccc-ceeecccccCEEEEEEecCCCcEEEEEEeCC--CcEEEEE-cCCceEEEeeC------
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEG------ 492 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~-~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d--~~i~iwd-~~~~~~~~~~~------ 492 (1096)
+|-.+|.+.+|..+.+..-.. +..+. -...+..+.-++..++ ++++|+.. ..+.+|| ...+.+.+-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 888899999999985432111 11232 2356777777777775 67779988 8999999 66655544322
Q ss_pred -CCCCe--EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 493 -HEAPV--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 493 -~~~~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
-.-|| +++.|.+......|++++.-+.+|+||.+.+.. +..+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 22344 466676654468899999999999999986554 4577778889999999999999999987 889999
Q ss_pred EeCCCCeeeEE-EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 569 WNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
+|.++++.... +.+..+ .+.++..+|.+.+++++|-|..++|+|+++.+++....... .++++.+.++
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~~ 342 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRDD 342 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecCC
Confidence 99999998887 777766 89999999999999999999999999999977776655443 4566666553
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-10 Score=118.27 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=131.8
Q ss_pred CCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC-eEEEEeeccceeeeeeccccccccc
Q 001343 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-TIHIYNVRVDELCVWSIDTWEKRKS 920 (1096)
Q Consensus 842 dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg-~i~iw~~~~~~~~~w~~~~~~~~~~ 920 (1096)
+|.++|..+.|+..|.+...+-.++. +|.+.|.-..+.- +++-++.|..|| .+-|+|..+++
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-------------- 393 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-------------- 393 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce--------------
Confidence 78899999999999998766655543 5677799888888 788999999999 89999999887
Q ss_pred eeeecCCCCCCCCCceEEEecCCcEEEEE-ecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCC--
Q 001343 921 VTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG-- 997 (1096)
Q Consensus 921 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg-- 997 (1096)
++...+.-. .|.+++.++||+.++++ ....|.++|+++|.....-... .+-|+.+.|+|+++++|.+.-+|
T Consensus 394 --~kr~e~~lg-~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~---~~lItdf~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 394 --VKRIEKDLG-NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE---YGLITDFDWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred --EEEeeCCcc-ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc---cceeEEEEEcCCceeEEEecCccee
Confidence 233333333 89999999999999995 4568999999999853322222 67899999999999999988776
Q ss_pred --cEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEe
Q 001343 998 --NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1049 (1096)
Q Consensus 998 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~ 1049 (1096)
.|+++|+++++......+.+ .-+ +-+|.| |+++|.--+
T Consensus 468 tq~Iklydm~~~Kiy~vTT~ta-----------~Df--sPaFD~-d~ryLYfLs 507 (668)
T COG4946 468 TQSIKLYDMDGGKIYDVTTPTA-----------YDF--SPAFDP-DGRYLYFLS 507 (668)
T ss_pred eeeEEEEecCCCeEEEecCCcc-----------ccc--CcccCC-CCcEEEEEe
Confidence 58999999999776544333 222 248888 888765543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=140.96 Aligned_cols=235 Identities=14% Similarity=0.103 Sum_probs=150.3
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeC---CCeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
+|-+|...........|...+.+.+|+|||++ |+..+. +..|.+||+.+++... +.
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~ 244 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VA 244 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------ec
Confidence 55544333334444457888999999999995 555543 3479999998876532 22
Q ss_pred cCCCCEEEEEEcCCCCEEEE-EECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCc--E
Q 001343 404 DVPISVSRVAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKL--I 477 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~--i 477 (1096)
.+.+...+.+|||||+.|+. .+.+| .|.+||+.+++.. .+..+.......+|+|||+ .|+.++ .++. |
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~i 318 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQI 318 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceE
Confidence 23344567899999998864 45555 6999999887643 2445666667899999999 566555 3444 6
Q ss_pred EEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC---eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
+++|..+.....+..+.......+|+| +|++|+..+.++ .|.+||+.+++.. .+. +........|+|||++++
T Consensus 319 y~~dl~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 319 YRVAASGGSAERLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVL 394 (433)
T ss_pred EEEECCCCCeEEeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEE
Confidence 666633333333333333445677866 667777665443 6899998776654 222 222445679999999988
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
..+.. .+...|++++... ...+.+..+.. .+...+|+|
T Consensus 395 ~~s~~-~g~~~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 395 YATRE-GGRGVLAAVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEec-CCceEEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence 77653 3456788998854 34444443333 444456655
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-10 Score=112.28 Aligned_cols=238 Identities=10% Similarity=0.168 Sum_probs=163.5
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE-EE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-VA 424 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~-s~ 424 (1096)
....++|+.|.. -+++| .|.-.+||+.+--+...+.. +.+-.-.+.-+-| -.++|| +|
T Consensus 7 ~~lsvs~NQD~S-cFava-~~~Gfriyn~~P~ke~~~r~-----------------~~~~G~~~veMLf--R~N~laLVG 65 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-CFAVA-TDTGFRIYNCDPFKESASRQ-----------------FIDGGFKIVEMLF--RSNYLALVG 65 (346)
T ss_pred ceeEEEEccCCc-eEEEE-ecCceEEEecCchhhhhhhc-----------------cccCchhhhhHhh--hhceEEEec
Confidence 455699999988 57776 56678999987533221100 0111112222222 234554 34
Q ss_pred ECC------CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c-CCceEEEeeCCCCC
Q 001343 425 FTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEGHEAP 496 (1096)
Q Consensus 425 ~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~~~~~~~~ 496 (1096)
|.+ ..|.|||=...+++. ++ .-..+|.++.+.++ .|+..- .+.|+||. . +-+.++.+.....|
T Consensus 66 Gg~~pky~pNkviIWDD~k~~~i~---el-~f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 66 GGSRPKYPPNKVIIWDDLKERCII---EL-SFNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred CCCCCCCCCceEEEEecccCcEEE---EE-EeccceeeEEEcCC----eEEEEe-cCeEEEEEcCCChhheeeeecccCC
Confidence 333 479999944444443 23 35678999999877 455544 67999999 4 66667666543333
Q ss_pred eEEEEeeecCCCcEEEE-EECCCeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 497 VYSICPHHKENIQFIFS-TAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
=--++..|..+..+|+. |-.-|.|+|-|+..... ......|...|.+++.+.+|..+++++. ...-|+|||..+
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt---kGTLIRIFdt~~ 213 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST---KGTLIRIFDTED 213 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc---CcEEEEEEEcCC
Confidence 22333334444444544 44569999999986655 5788899999999999999999999987 244689999999
Q ss_pred CeeeEEEcC-cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 574 GTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 574 ~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
|..+..++. .....+.+++|+|+..+|+++++.|++.||.++.
T Consensus 214 g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 214 GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999864 3445799999999999999999999999998875
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-10 Score=121.70 Aligned_cols=376 Identities=12% Similarity=0.079 Sum_probs=237.3
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
.+|+..+......+....-++..+++||.|.+|++.. ...|.+|+-..+..+..+... .+.-+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeecC---CceecccCccccee
Confidence 3455444444444444566889999999999999876 567899998777655555432 57779999999999
Q ss_pred EEEEcC---------------CeEEEEeCCCCeEEEEeecCCCCCCcc-EEEEeCCCCEEEEEECCCcEEEEEcCCCccc
Q 001343 601 LAVGED---------------SQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1096)
Q Consensus 601 ~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 664 (1096)
.+-+.. ..+.+||..+|..+..+.........+ -+.|+-+..++|-.. ...+.|+++ ++.-.
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccc
Confidence 986533 359999999999999888766532244 678888887776653 347999997 33111
Q ss_pred cccccCCCcccc-cCcceeEEeecCCCeEE-ecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCcccee
Q 001343 665 LRAVENPPFEAL-RTPIESVALKVSASSAV-SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1096)
Q Consensus 665 ~~~~~~~~~~~~-~~~v~~~~~s~~g~~lv-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~ 742 (1096)
.+..... ...+....++|.|..-. +.+.+. ..+..+++++|.
T Consensus 165 -----~~p~~~lr~~gi~dFsisP~~n~~~la~~tPE-------------------------------k~~kpa~~~i~s 208 (561)
T COG5354 165 -----EHPFKNLRPVGILDFSISPEGNHDELAYWTPE-------------------------------KLNKPAMVRILS 208 (561)
T ss_pred -----cCchhhccccceeeEEecCCCCCceEEEEccc-------------------------------cCCCCcEEEEEE
Confidence 1111111 23466677887754321 222221 234457788888
Q ss_pred eeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcccccc
Q 001343 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1096)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~ 822 (1096)
+.. ........+ ..-.-..+.|.+.|.+++.-..-.+ + . +........+.++++. ++.+.
T Consensus 209 Ip~---~s~l~tk~l-----fk~~~~qLkW~~~g~~ll~l~~t~~-k---s-------nKsyfgesnLyl~~~~-e~~i~ 268 (561)
T COG5354 209 IPK---NSVLVTKNL-----FKVSGVQLKWQVLGKYLLVLVMTHT-K---S-------NKSYFGESNLYLLRIT-ERSIP 268 (561)
T ss_pred ccC---CCeeeeeee-----EeecccEEEEecCCceEEEEEEEee-e---c-------ccceeccceEEEEeec-ccccc
Confidence 762 111222111 1122356778888887765432111 0 0 0000000122233322 22222
Q ss_pred ccccCCCcCCCeeeeeecCCCcEEEEec---CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCC---Ce
Q 001343 823 NDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---ST 896 (1096)
Q Consensus 823 ~~~~g~~~~~~v~~l~~s~dg~~la~~~---dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~d---g~ 896 (1096)
... + ..++|...+|.|.++.+++.+ .-.+.++|++.. +... .....-..+.|+| .++++++++-| |.
T Consensus 269 V~~-~--~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp-~~r~il~agF~nl~gn 341 (561)
T COG5354 269 VEK-D--LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSP-HERYILFAGFDNLQGN 341 (561)
T ss_pred eec-c--ccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccC-cccEEEEecCCccccc
Confidence 122 2 578999999999998877766 367999998654 4333 3455667889999 89999987765 67
Q ss_pred EEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEE-------ecceEEEEEcccceeccccc
Q 001343 897 IHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-------HETQLAIYDASKMERIRQWT 969 (1096)
Q Consensus 897 i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~-------~d~~i~iwd~~~~~~~~~~~ 969 (1096)
+.+|+......| +..+.+. ...-+.|||||.++.++ .|..+.|||+.....
T Consensus 342 i~i~~~~~rf~~--------------~~~~~~~---n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~----- 399 (561)
T COG5354 342 IEIFDPAGRFKV--------------AGAFNGL---NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV----- 399 (561)
T ss_pred eEEeccCCceEE--------------EEEeecC---CceEeeccCCceEEEecCCCcccccCcceEEEEecCchh-----
Confidence 999998876522 2344442 44667899999998882 277899999975542
Q ss_pred cCCCCCCCceEEEEeeCCcEEEEEecCC
Q 001343 970 PQDALSAPISCAVYSCNSQLVFATFCDG 997 (1096)
Q Consensus 970 ~~~~~~~~i~~l~~s~dg~~la~~~~dg 997 (1096)
...+.+.|.|.|++.-+.+.+.
T Consensus 400 ------fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 400 ------FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ------hhhhhccccCCcccceeeccCC
Confidence 2456678888888888777665
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-08 Score=121.43 Aligned_cols=248 Identities=8% Similarity=0.115 Sum_probs=160.3
Q ss_pred CCEEEEEEcCCCCEEEEEEC--CC--eEEEEEccCCCccccceeec-----ccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 407 ISVSRVAWSPDGNYVGVAFT--KH--LIQLYSYAGSNDLRQHSQID-----AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~--dg--~i~vwd~~~~~~~~~~~~l~-----~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
..+...+|.+....+..+.. .. .|.+...........+..+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 35777788776554443332 22 23443333222112222222 3457899999999998 68888889999
Q ss_pred EEE----EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC-------------CC----------Ce
Q 001343 478 KVW----ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-------------TM----------GS 530 (1096)
Q Consensus 478 ~iw----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------------~~----------~~ 530 (1096)
.+. +.....+.....-...|.+++|+| |+..|+..+.+|++.+.+-+ -+ +.
T Consensus 100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EEEEccCCCCCceeEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcc
Confidence 999 544444444444577899999988 66789999989988775311 00 00
Q ss_pred eeEEeC------------------------CCCcEEEEEEcCCCCEEEEEeeccCC--CCeEEEEeCCCCeeeEEEcCcC
Q 001343 531 RVDYDA------------------------PGHWCTTMLYSADGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 531 ~~~~~~------------------------~~~~i~~l~~s~~~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
...+.+ ....-..++|-.||.++++.+.+... ...+++|+-+ |.+..+-..-.
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~ 256 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD 256 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC
Confidence 001100 11234678899999999988763332 4789999965 66555444322
Q ss_pred ccceEEEEEeCCCCEEEEEEc---CCeEEEEeCCCCeEEEEeecC--CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 585 KKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAE--GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+ --..++|-|.|++|++... ...|.+|.. +|.....+... .....|..+.|++|+..||....|. |.+|...
T Consensus 257 g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 257 G-LEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred C-ccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 2 4456899999999988763 456888875 44444444332 2334789999999999999988765 9999987
Q ss_pred CCc
Q 001343 660 IGL 662 (1096)
Q Consensus 660 ~~~ 662 (1096)
+..
T Consensus 334 NYH 336 (928)
T PF04762_consen 334 NYH 336 (928)
T ss_pred CCE
Confidence 763
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-11 Score=135.67 Aligned_cols=235 Identities=13% Similarity=0.041 Sum_probs=154.1
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeC---CCeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
+|-.+...........|...|.+.+|||||++ |+..+. +..|.+||+.+++... +.
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~-lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~ 242 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQE-ITYMSYANGRPRVYLLDLETGQREL--------------------VG 242 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCE-EEEEEecCCCCEEEEEECCCCcEEE--------------------ee
Confidence 66666444444444568889999999999996 554432 4689999998886532 34
Q ss_pred cCCCCEEEEEEcCCCCEEE-EEECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCC--cE
Q 001343 404 DVPISVSRVAWSPDGNYVG-VAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LI 477 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~-s~~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~--~i 477 (1096)
.+.+.+.+.+|||||+.|+ +.+.++ .|.+||+.+++.. .+..+.+......|+|||+ .|+..+ .++ .|
T Consensus 243 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~--~i~f~s~~~g~~~I 316 (435)
T PRK05137 243 NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGS--QIVFESDRSGSPQL 316 (435)
T ss_pred cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCC--EEEEEECCCCCCeE
Confidence 4556778899999999876 445555 4777888876543 3555666778899999999 555554 333 67
Q ss_pred EEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC---CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
++||..+.....+..+...+....|+| +|+.|+..+.+ ..|.+||+..... ..+. ....+..+.|+|||+.|+
T Consensus 317 y~~d~~g~~~~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 317 YVMNADGSNPRRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIM 392 (435)
T ss_pred EEEECCCCCeEEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEE
Confidence 888855555555554455566777866 66777776543 3577788755443 2222 223567889999999988
Q ss_pred EEeeccCCC--CeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 555 SCGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 555 ~~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
..+...... ..++++|+..+.. +.+.. .. .+...+|+|
T Consensus 393 ~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 393 FFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 766432221 4788888876554 34432 11 344455655
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-11 Score=121.74 Aligned_cols=243 Identities=10% Similarity=0.140 Sum_probs=181.2
Q ss_pred CCCEEEEEEcCCCC--EEEEEECCCeEEEEEccCCCccccc---eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 406 PISVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQH---SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 406 ~~~V~~l~~spd~~--~l~s~~~dg~i~vwd~~~~~~~~~~---~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
...|..++|.-|++ .|..++.|..+..+.+......... .......+.|..++.. |+ .|++|-.+|.+.+|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEEE
Confidence 45688888876654 4544546667777777665443321 1234456677777765 33 68999999999999
Q ss_pred E-cC----CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC--CeEEEEEcCCCCeeeEEeCCC---------CcEEEE
Q 001343 481 E-LS----GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTMGSRVDYDAPG---------HWCTTM 544 (1096)
Q Consensus 481 d-~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~l 544 (1096)
. .. ...+..+..+ ..+..+.-++. ...++++|+.. ..+.+||++..+.++.-.... -+++++
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence 9 42 2334444433 34555544433 33577779999 889999999886665433221 167889
Q ss_pred EEcCC--CCEEEEEeeccCCCCeEEEEeCCCC-eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE
Q 001343 545 LYSAD--GSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 545 ~~s~~--~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1096)
.|-+. ...+++++. -+.+++||.+.+ +++..|..... +++++...|+++++++|..-|.+..||.+.+....
T Consensus 209 ~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred eecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceeec
Confidence 99887 788999887 899999999865 46667766555 89999999999999999999999999999999887
Q ss_pred E-eecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 622 S-TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 622 ~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
. +.+..+ .|.++..+|.++++++++-|..+||+|+.+.
T Consensus 284 ~~~kg~tG--sirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 284 CGLKGITG--SIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred cccCCccC--CcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 7 665555 8999999999999999999999999999885
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-10 Score=123.31 Aligned_cols=288 Identities=15% Similarity=0.144 Sum_probs=192.8
Q ss_pred ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC
Q 001343 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1096)
Q Consensus 449 ~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (1096)
.|...-+.|..+|||++ ++++|..--.|++||...-.+..-+.....+..+... +.|-..++.-..|.+|.+...-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~-- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY-- 124 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceeeeeecccccceeEEEe-ccchhhheEeecCceeeehhhc--
Confidence 57788899999999997 7888999999999994433332222223333333222 1132345555667777654211
Q ss_pred CeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCe
Q 001343 529 GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ 608 (1096)
Q Consensus 529 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 608 (1096)
........ +..-..++++.-.--|++++. ...|+-++++.|..+..|..... .++++.+++-..+|++|+.+|.
T Consensus 125 G~hy~~RI-P~~GRDm~y~~~scDly~~gs----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 125 GRHYRTRI-PKFGRDMKYHKPSCDLYLVGS----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred Ceeeeeec-CcCCccccccCCCccEEEeec----CcceEEEEccccccccccccccc-cceeeeecCccceEEecccCce
Confidence 11111111 112345566544444555554 66899999999999998887765 8899999999999999999999
Q ss_pred EEEEeCCCCeEEEEeecCCC---------CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCc
Q 001343 609 IKFWDMDNVNILTSTDAEGG---------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1096)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1096)
|.+||.+....+..+....+ ...|+++.|+.+|-.+++|+.+|.+.|||+.+....+..-.+. ..+
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~-----e~p 273 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY-----ELP 273 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC-----ccc
Confidence 99999998877766653322 2358999999999999999999999999998874443332222 344
Q ss_pred ceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCC
Q 001343 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE 759 (1096)
Q Consensus 680 v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 759 (1096)
|..+.|.+.+ ++..+++.+. ..++||+-.+ +.....+.
T Consensus 274 i~~l~~~~~~-----------------------------------~q~~v~S~Dk-~~~kiWd~~~---Gk~~asiE--- 311 (703)
T KOG2321|consen 274 IKKLDWQDTD-----------------------------------QQNKVVSMDK-RILKIWDECT---GKPMASIE--- 311 (703)
T ss_pred eeeecccccC-----------------------------------CCceEEecch-HHhhhccccc---CCceeecc---
Confidence 5556664431 1122333332 7789999774 33333322
Q ss_pred CCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCC
Q 001343 760 STDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (1096)
Q Consensus 760 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~ 796 (1096)
....+..+++-|++..++++..++.+..|-++.-
T Consensus 312 ---pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 312 ---PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ---ccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 5567999999999988888888888877776543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.7e-11 Score=116.70 Aligned_cols=262 Identities=12% Similarity=0.200 Sum_probs=174.8
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc--cCCCCEEEEEEcCCCC-
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK--DVPISVSRVAWSPDGN- 419 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~spd~~- 419 (1096)
..+-|.+|.|..+|. +||+|..+|.|.++.-..... ..++++..-. +....-.-++ .-...|..+.|.++++
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~---~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK---GEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeecccccc---cceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 345789999999999 699999999999998543221 0111110000 0000000011 1135689999998754
Q ss_pred -EEEEEECCCeEEEEEccCCCccc------------------c--------------cee-ecccccCEEEEEEecCCCc
Q 001343 420 -YVGVAFTKHLIQLYSYAGSNDLR------------------Q--------------HSQ-IDAHVGAVNDLAFAYPNKL 465 (1096)
Q Consensus 420 -~l~s~~~dg~i~vwd~~~~~~~~------------------~--------------~~~-l~~h~~~v~~l~~s~d~~~ 465 (1096)
.++..+.|.+|++|.+....... . .+. -.+|.--|+++.++.|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56667789999999876422111 0 001 246888899999999998
Q ss_pred EEEEEEeCCCcEEEEE--cCCceE--EEeeCC-----CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe------
Q 001343 466 LCVVTCGDDKLIKVWE--LSGRKL--FNFEGH-----EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS------ 530 (1096)
Q Consensus 466 ~~l~s~s~d~~i~iwd--~~~~~~--~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------ 530 (1096)
.++++ .|=.|.+|+ ...+.. ..++.+ ..-|++..|+|.. ...++-.+..|+|++.|++....
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 66665 488999999 444432 223322 3457888899875 46788888899999999983221
Q ss_pred eeEEeCC----------CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC-CCCeeeEEEcCcCc-----------cc-
Q 001343 531 RVDYDAP----------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE-SEGTIKRTYAGFRK-----------KS- 587 (1096)
Q Consensus 531 ~~~~~~~----------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~-----------~~- 587 (1096)
....... -..|..+.|+++|+++++-. -.+|++||+ ...+++.+++.|.. ..
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 1111111 12578899999999999864 578999999 45667777765532 11
Q ss_pred --eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 588 --NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 588 --i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
-..++|+.++.++++|+....+++|+...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 1237899999999999999999999976654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-09 Score=119.17 Aligned_cols=311 Identities=14% Similarity=0.188 Sum_probs=181.7
Q ss_pred EEEEECC----CeEEEEEcCCCCeeeEE---eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC--Cee--eEE
Q 001343 511 IFSTAID----GKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI--KRT 579 (1096)
Q Consensus 511 l~s~~~d----g~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~--~~~--~~~ 579 (1096)
+++|+.. +.|.+|+++........ .........++++|++++|++........+.|..|.+.. +++ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4555555 78999988443333221 123446778999999999999875322467888887765 333 333
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCC-CeEEEE---eec--------CCCCCCccEEEEeCCCCEEEE
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTS---TDA--------EGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~~--------~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
... .+.....++++|++++++++. .+|.|.++++.. +.+... +.. ........++.++|+++++++
T Consensus 82 ~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 82 VPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred ecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 332 222456699999999999987 589999999987 443332 111 112235679999999998888
Q ss_pred EEC-CCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCC
Q 001343 647 TTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1096)
Q Consensus 647 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d 725 (1096)
... ...|.+|++......+...... ........+.++|+|+|+++..
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv------------------------------- 208 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYV------------------------------- 208 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEE-------------------------------
T ss_pred EecCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEE-------------------------------
Confidence 753 3479999987653222111100 0111234677999999888722
Q ss_pred CCCccccCCCCCccceeeeeeec-CCceEEEE-cCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCC
Q 001343 726 DKPRTVDDVTDKPKPWQLAEIVD-SGQCRLVT-MPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSG 802 (1096)
Q Consensus 726 ~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g 802 (1096)
....+++|.++++..... -.....+. ++...........++++|||++|.++.. .+.|.+|+++... |
T Consensus 209 -----~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~----g 279 (345)
T PF10282_consen 209 -----VNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT----G 279 (345)
T ss_dssp -----EETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT----T
T ss_pred -----ecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC----C
Confidence 223346677777661100 00111111 1110112236889999999998887775 6789999984311 1
Q ss_pred ceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEc--ccceEEEeec-CCCCCeeE
Q 001343 803 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNM--MTFKVMTTFM-SPPPASTF 877 (1096)
Q Consensus 803 ~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~--~~~~~~~~~~-~h~~~i~~ 877 (1096)
+.. .+. .++. .....+.++++|+|++|+++. ++.|.+|++ .+|.+...-. .......|
T Consensus 280 ~l~--------------~~~-~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 280 TLT--------------LVQ-TVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp TEE--------------EEE-EEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEE
T ss_pred ceE--------------EEE-EEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEE
Confidence 111 001 1110 134468899999999999988 478999976 5666544321 23345566
Q ss_pred EEE
Q 001343 878 LAF 880 (1096)
Q Consensus 878 l~~ 880 (1096)
|.|
T Consensus 343 i~f 345 (345)
T PF10282_consen 343 IVF 345 (345)
T ss_dssp EEE
T ss_pred EeC
Confidence 665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-09 Score=104.63 Aligned_cols=301 Identities=11% Similarity=0.102 Sum_probs=185.1
Q ss_pred CCeEEEEEcCCCCeee---EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC--CCCeeeEEE--cCcCccceE
Q 001343 517 DGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTIKRTY--AGFRKKSNG 589 (1096)
Q Consensus 517 dg~i~iwd~~~~~~~~---~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~--~~~~~~~i~ 589 (1096)
++-|.+|++++..... ........++-++|+|+++.|.++....+ ++.|..|.+ .+|++...- ..... +.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~ggvaay~iD~~~G~Lt~ln~~~~~g~-~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-EGGVAAYRIDPDDGRLTFLNRQTLPGS-PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-cCcEEEEEEcCCCCeEEEeeccccCCC-CCe
Confidence 5679999998544433 23344557889999999999999876422 455555544 446543322 22222 336
Q ss_pred EEEEeCCCCEEEEEE-cCCeEEEEeCCC-CeEEEEeecCCC----------CCCccEEEEeCCCCEEEEEEC-CCcEEEE
Q 001343 590 VVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTSTDAEGG----------LPNLPRLRFSKEGNLLAVTTA-DNGFKIL 656 (1096)
Q Consensus 590 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~-dg~i~iw 656 (1096)
.+++++++++++++. ..|.|.++-++. |.+........+ ...+....+.|++++|++..- .-.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 699999999999987 568899999865 443332221111 123788999999999988764 2369999
Q ss_pred EcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCC
Q 001343 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1096)
Q Consensus 657 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg 736 (1096)
++..+. ....-...- ......+.+.|+|++++... ...-++
T Consensus 173 ~~~dg~-L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~------------------------------------v~EL~s 213 (346)
T COG2706 173 DLDDGK-LTPADPAEV--KPGAGPRHIVFHPNGKYAYL------------------------------------VNELNS 213 (346)
T ss_pred EcccCc-ccccccccc--CCCCCcceEEEcCCCcEEEE------------------------------------EeccCC
Confidence 998772 211111111 12335678999999988622 223347
Q ss_pred CccceeeeeeecCCceEE----EEcCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCcc
Q 001343 737 KPKPWQLAEIVDSGQCRL----VTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQ 811 (1096)
Q Consensus 737 ~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~ 811 (1096)
+|.+|..+.. .+.+.. ..+|..-........+..++||++|.++.. ...|.+|.++. ++..+.
T Consensus 214 tV~v~~y~~~--~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~-----~~g~L~----- 281 (346)
T COG2706 214 TVDVLEYNPA--VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP-----DGGKLE----- 281 (346)
T ss_pred EEEEEEEcCC--CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC-----CCCEEE-----
Confidence 8888888743 122221 123332223456788999999998877766 45777777643 111110
Q ss_pred ccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-C-CeEEEEEc--ccceEEEeec-CCCCCeeEEEEe
Q 001343 812 HWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-G-GKISLFNM--MTFKVMTTFM-SPPPASTFLAFH 881 (1096)
Q Consensus 812 ~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-d-g~v~iwd~--~~~~~~~~~~-~h~~~i~~l~~s 881 (1096)
.+..... +...-+.+.|+++|++|+++. + +.|.+|.+ .+|++-.... .......||.|.
T Consensus 282 --------~~~~~~t---eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 282 --------LVGITPT---EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred --------EEEEecc---CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 0000111 334467789999999999998 3 67888876 4565543332 334455677664
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-10 Score=113.70 Aligned_cols=163 Identities=18% Similarity=0.340 Sum_probs=114.6
Q ss_pred EEEEEEcCCCCEEEEEEC----------CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 409 VSRVAWSPDGNYVGVAFT----------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
=..+.|+|+|++|++-.. -+...+|-++..........+ ...++|.+++|+|+|+.+.++.|..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 346899999998876433 134556666433222111122 234579999999999964455566788999
Q ss_pred EEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC---CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 479 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
+||.+++.+..+. ...++.+.|+| +|++|++++. .|.|.+||.++.+.+.... ...++.++|+|||+++++
T Consensus 87 lyd~~~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 87 LYDVKGKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EEcCcccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9997788887775 56788999977 6689998874 4679999999666655443 335789999999999998
Q ss_pred Eeec--cCCCCeEEEEeCCCCeeeEE
Q 001343 556 CGTS--KDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 556 ~~~~--~~~~~~i~iwd~~~~~~~~~ 579 (1096)
+... ...++.++||+.. |+.+..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 8753 1246788999875 554443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-09 Score=113.50 Aligned_cols=312 Identities=12% Similarity=0.096 Sum_probs=190.3
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~ 426 (1096)
=+-+.|||-|. ||+|- .-.-|.+|--.+-..+.. + .| -.|.-+.|||+.+||+|-+.
T Consensus 213 etyv~wSP~GT-YL~t~-Hk~GI~lWGG~~f~r~~R-------------------F-~H-p~Vq~idfSP~EkYLVT~s~ 269 (698)
T KOG2314|consen 213 ETYVRWSPKGT-YLVTF-HKQGIALWGGESFDRIQR-------------------F-YH-PGVQFIDFSPNEKYLVTYSP 269 (698)
T ss_pred eeeEEecCCce-EEEEE-eccceeeecCccHHHHHh-------------------c-cC-CCceeeecCCccceEEEecC
Confidence 47899999999 58875 456788998655443321 1 13 35889999999999998652
Q ss_pred -----------CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC
Q 001343 427 -----------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 427 -----------dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~ 494 (1096)
...++|||+.+|...+.+..+.+....-.-..||.|++ ++|--.. .+|.|++ .+-.++..-.-.-
T Consensus 270 ~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK--y~Arm~~-~sisIyEtpsf~lld~Kslki 346 (698)
T KOG2314|consen 270 EPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK--YFARMTG-NSISIYETPSFMLLDKKSLKI 346 (698)
T ss_pred CccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc--eeEEecc-ceEEEEecCceeeecccccCC
Confidence 25799999999988776554433333334568999999 6766554 6789998 4433322211223
Q ss_pred CCeEEEEeeecCCCcEEEEEEC-----CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec--cCC----C
Q 001343 495 APVYSICPHHKENIQFIFSTAI-----DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS--KDG----D 563 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~--~~~----~ 563 (1096)
..|....|+|. ++.|+-=.. -.++.+-.+.+.+.+.....++-.=..+.|-.+|.+|+.-..- +.+ -
T Consensus 347 ~gIr~FswsP~--~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f 424 (698)
T KOG2314|consen 347 SGIRDFSWSPT--SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF 424 (698)
T ss_pred ccccCcccCCC--cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence 44666777774 345543221 1234444555555544444443333456777888888764320 000 1
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE---cCCeEEEEeCCC-C---eEEEEeecCCCCCCccEEE
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDN-V---NILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~~~ 636 (1096)
..+.|+.++........-.... .+-..+|.|.|+.+++-+ ...++.+|.+.+ . +++..+.. ...+.+.
T Consensus 425 ~n~eIfrireKdIpve~velke-~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vf 499 (698)
T KOG2314|consen 425 SNLEIFRIREKDIPVEVVELKE-SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVF 499 (698)
T ss_pred eeEEEEEeeccCCCceeeecch-heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEE
Confidence 2344555443332211111222 667789999999887754 345788998873 2 23333332 2578999
Q ss_pred EeCCCCEEEEEE---CCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 637 FSKEGNLLAVTT---ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 637 ~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
|+|.|++++.+. ..|.+.++|............. ....+.+.|.|.|++++++.+
T Consensus 500 wsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e------h~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 500 WSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE------HFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred EcCCCcEEEEEEecccccceEEEecchhhhhhccCcc------ccccccceECCCCCEEEEeee
Confidence 999999988765 4688999998642111111111 123456889999999977755
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.4e-10 Score=125.17 Aligned_cols=223 Identities=13% Similarity=0.092 Sum_probs=140.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc--
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~-- 476 (1096)
+..+...+.+..|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44466788999999999999876543 368899998876422 2222333457899999995 3345566665
Q ss_pred EEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE-CCCe--EEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEE
Q 001343 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 477 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
|++||..+..+..+..+.......+|+| ||+.|+..+ .+|. |.++|+.+++... +..........+|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEE
Confidence 7777844445556665655667778876 566665554 3444 5555665554332 22233334567899999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC-C--eEEEEeCCCCeEEEEeecCCCCC
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-S--QIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
+..+.. .+...|.++|+.+++........ ......|+|+|+.|+..+.+ + .+++++. ++.....+.....
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--
Confidence 887642 22346778898887654322221 11234799999988776533 3 4777787 4555555554332
Q ss_pred CccEEEEeC
Q 001343 631 NLPRLRFSK 639 (1096)
Q Consensus 631 ~v~~~~~s~ 639 (1096)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 567778876
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-09 Score=124.80 Aligned_cols=224 Identities=14% Similarity=0.123 Sum_probs=142.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--c
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~ 476 (1096)
+..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 34467789999999999999877644 369999998875432 3333445567899999994 333555555 5
Q ss_pred EEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CC--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEE
Q 001343 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 477 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
|++||..+.....+..+........|+| ||+.|+..+. +| .|.++++.+++... +...........|+|+|+.+
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8888944444555665665566677866 5666655543 44 46666776655432 22223334567899999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC---CeEEEEeCCCCeEEEEeecCCCCC
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..|++++...+ ....+.....
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g-- 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQG-- 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCC--
Confidence 877642 22446899999887654332221 11235899999998877643 35777777543 3333433322
Q ss_pred CccEEEEeCC
Q 001343 631 NLPRLRFSKE 640 (1096)
Q Consensus 631 ~v~~~~~s~~ 640 (1096)
.+...+|+|-
T Consensus 419 ~~~~p~ws~~ 428 (430)
T PRK00178 419 EVREPSWSPY 428 (430)
T ss_pred CcCCCccCCC
Confidence 5666777763
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-10 Score=127.35 Aligned_cols=235 Identities=12% Similarity=0.054 Sum_probs=144.2
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCC--CeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~d--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|-++.-.......+.+...+...+|||||++++.+...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 5555543344444556888999999999999644444333 369999998886542 222
Q ss_pred CCCCEEEEEEcCCCCEEEE-EECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCC--cEE
Q 001343 405 VPISVSRVAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIK 478 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~--~i~ 478 (1096)
..+.+...+|||||+.|+. ...+| .|.+||+.+++.. .+..+........|+|||+ .|+..+ .++ .|+
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~--~i~f~s~~~g~~~iy 314 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGR--TLYFTSDRGGKPQIY 314 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCC--EEEEEECCCCCceEE
Confidence 2334557899999998874 44444 6888899887543 2445666677889999999 444444 333 577
Q ss_pred EEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC-C--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-G--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
++| .+++. ..+...........|+| +|+.|+..+.+ + .|.+||+.+++...... ........|+|||+.++
T Consensus 315 ~~d~~~g~~-~~lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 315 KVNVNGGRA-ERVTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLI 389 (430)
T ss_pred EEECCCCCE-EEeecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEE
Confidence 777 45553 33322222233456765 66777766543 3 57788888765433222 12223568999999998
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
..+. ..+...|++++... ...+.+..+.+ .+...+|+|
T Consensus 390 ~~~~-~~g~~~l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 390 YATR-QQGRGVLMLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEEe-cCCceEEEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 8764 22345688888754 33344443322 344455655
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-09 Score=126.04 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=138.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--c
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~ 476 (1096)
+..+...+...+|||||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566678999999999999987654 479999998875432 3445667778999999984 334455444 5
Q ss_pred EEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CC--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEE
Q 001343 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 477 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
|++||..+.....+..+........|++ +++.|+..+. ++ .|.++|+.+++. ..+..+...+....|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8888844444555555555555667766 6677766554 33 577777765543 3344455567788999999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC---eEEEEeCCCCeEEEEee
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 624 (1096)
+.+.... +...|.+||+.++.... +.... ......|+|+++.|+..+.++ .+++.+.. +.....+.
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGERV-LTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 9877521 23489999998765433 32221 223457999999988877543 45565543 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-09 Score=123.50 Aligned_cols=240 Identities=13% Similarity=0.051 Sum_probs=149.5
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCc--EEEEEeCCC--eEEEEecCCCCeeecccceeecccccCcccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT--LLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~--llasg~~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1096)
+|-++.-.............+..-+|||||+. ++++...+| .|.+.++.+|+... +
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------l 226 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------I 226 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------e
Confidence 66666444444443445566788899999985 333544444 67778888776432 2
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEC-CC----eEEEEEccCCC--ccccceeecccccCEEEEEEecCCCcEEEEEEe-CC
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAFT-KH----LIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DD 474 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~~-dg----~i~vwd~~~~~--~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d 474 (1096)
....+.....+|||||+.||..+. +| .+.+|++.++. ..+. ...++.+.....+|+|||+ .|+..+ .+
T Consensus 227 t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~--~Laf~s~~~ 302 (428)
T PRK01029 227 LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGT--RLVFVSNKD 302 (428)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCC--EEEEEECCC
Confidence 223444556899999999987653 22 34447776532 1221 1222334456789999999 555444 46
Q ss_pred CcEEEEE--c--CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC---CeEEEEEcCCCCeeeEEeCCCCcEEEEEEc
Q 001343 475 KLIKVWE--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYS 547 (1096)
Q Consensus 475 ~~i~iwd--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 547 (1096)
|...+|. . .+.....+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++..... .....+....|+
T Consensus 303 g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wS 379 (428)
T PRK01029 303 GRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWA 379 (428)
T ss_pred CCceEEEEECcccccceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEEC
Confidence 6555654 3 2344455555555667788876 66777766543 46899999877654433 223456789999
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 596 (1096)
|||+.|+.... ..+...|+++|+.+++......+. . .+...+|+|.
T Consensus 380 pDG~~L~f~~~-~~g~~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~ 425 (428)
T PRK01029 380 IDSLHLVYSAG-NSNESELYLISLITKKTRKIVIGS-G-EKRFPSWGAF 425 (428)
T ss_pred CCCCEEEEEEC-CCCCceEEEEECCCCCEEEeecCC-C-cccCceecCC
Confidence 99999886553 234678999999888765554432 2 3445677764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-10 Score=126.91 Aligned_cols=222 Identities=18% Similarity=0.143 Sum_probs=143.3
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCC---CeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
+|-.+.........+.+...+...+|||||++ ||.++.+ ..|.+||+.+++... +.
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~ 230 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLATGQREK--------------------VA 230 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE--------------------ee
Confidence 55555433344444557778999999999995 5554433 489999998876532 22
Q ss_pred cCCCCEEEEEEcCCCCEEEEE-ECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-CC--cE
Q 001343 404 DVPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DK--LI 477 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~--~i 477 (1096)
.+.+.+.+++|+|||+.|+.. +.++ .|.+||+.+++... +..+........|+|||+ .|+..+. ++ .|
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~i 304 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----LTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQI 304 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE----CCCCCCCCCCEEECCCCC--EEEEEECCCCCceE
Confidence 344567779999999988754 4343 58889988765332 444555566789999999 5555443 33 57
Q ss_pred EEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC---eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
+++|..+.....+..+...+....|+| ++.+++.++.++ .|.+||+.++.... +.. ........|+|+|+.|+
T Consensus 305 y~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 305 YMMDADGGEVRRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMIL 380 (417)
T ss_pred EEEECCCCCEEEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEE
Confidence 777844444445554555667778866 667888887765 78888887744332 222 22344568999999998
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
..... ++...+++.+.. ++....+.
T Consensus 381 ~~~~~-~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 381 YATTR-GGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEeC-CCcEEEEEEECC-CceeeECC
Confidence 87752 223456666643 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.5e-10 Score=125.55 Aligned_cols=236 Identities=15% Similarity=0.092 Sum_probs=139.5
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCC--eEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|-++.-.......+.+...+.+.+|||||++++.+...++ .|.+||+.+++... +..
T Consensus 200 l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~ 259 (448)
T PRK04792 200 LMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTS 259 (448)
T ss_pred EEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecC
Confidence 44443322233334457778999999999996444443343 68889998876532 111
Q ss_pred CCCCEEEEEEcCCCCEEEE-EECCCe--EEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--cEEE
Q 001343 405 VPISVSRVAWSPDGNYVGV-AFTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKV 479 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s-~~~dg~--i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~i~i 479 (1096)
..+.....+|||||+.|+. .+.+|. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|++
T Consensus 260 ~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 260 FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYR 334 (448)
T ss_pred CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEE
Confidence 1223346899999998875 455564 778888876533 24455566788999999994 233333344 4666
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CCe--EEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
+| .+++. ..+..........+|+| ||++|+..+. ++. |.++|+.++.... +... .......|+|||+.++.
T Consensus 335 ~dl~~g~~-~~Lt~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~ 409 (448)
T PRK04792 335 VNLASGKV-SRLTFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIY 409 (448)
T ss_pred EECCCCCE-EEEecCCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEE
Confidence 66 44543 33322222234457766 5667666544 444 4445666654432 2211 12234579999999887
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
... .++...+++++. +|...+.+..+.+ .+...+|+|
T Consensus 410 ~~~-~~g~~~l~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 410 STT-YQGKQVLAAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEe-cCCceEEEEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 664 233456888887 4555666655433 445566765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-09 Score=112.38 Aligned_cols=289 Identities=12% Similarity=0.216 Sum_probs=184.2
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEeC-----------CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCC
Q 001343 340 SLHQGSTVISMDFHPSHQTLLLVGSS-----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (1096)
Q Consensus 340 ~l~h~~~V~~v~fsp~g~~llasg~~-----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (1096)
.+.|. .|.-+.|||+.+ ||+|=+. ...++|||+.+|...+... + +.+....
T Consensus 246 RF~Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~--~--------------~~~~~~~ 307 (698)
T KOG2314|consen 246 RFYHP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFP--V--------------IKSPYLK 307 (698)
T ss_pred hccCC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEccccchhccee--c--------------cCCCccc
Confidence 34454 699999999999 5877542 1579999999999876521 1 1112122
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-----CcEEEEE-c
Q 001343 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-L 482 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~i~iwd-~ 482 (1096)
-.-..||.|++|+|--.. ..|.||+..+-..+.. +.+ ....|....|+|.+. +||-=... ..+.+-. .
T Consensus 308 WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-Ksl--ki~gIr~FswsP~~~--llAYwtpe~~~~parvtL~evP 381 (698)
T KOG2314|consen 308 WPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-KSL--KISGIRDFSWSPTSN--LLAYWTPETNNIPARVTLMEVP 381 (698)
T ss_pred cceEEeccCCceeEEecc-ceEEEEecCceeeecc-ccc--CCccccCcccCCCcc--eEEEEcccccCCcceEEEEecC
Confidence 234689999999997766 4889998766332221 111 345688999999987 55532211 2344444 4
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE----------CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCE
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 552 (1096)
+++.+++-.-|. |..+.++...+|.+|+.-- .--.+.|+.++..........-...|...+|-|.|+.
T Consensus 382 s~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdk 459 (698)
T KOG2314|consen 382 SKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDK 459 (698)
T ss_pred ccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCe
Confidence 555555544333 5555666666777776532 1123556666655554444444457889999999998
Q ss_pred EEEEeeccCCCCeEEEEeCCC-C---eeeEEEcCcCccceEEEEEeCCCCEEEEEE---cCCeEEEEeCCCCeEEEEeec
Q 001343 553 LFSCGTSKDGDSFLVEWNESE-G---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~-~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
+++.+. .+...++.+|.+++ . +++..+.. ...+.+.|+|.|++++.++ ..|.+.++|+.......+-.
T Consensus 460 F~vi~g-~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~- 534 (698)
T KOG2314|consen 460 FAVISG-NTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS- 534 (698)
T ss_pred EEEEEc-cccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-
Confidence 887653 23366788887763 2 23333333 2566799999999998864 57899999997533222211
Q ss_pred CCCCCCccEEEEeCCCCEEEEEEC------CCcEEEEEcCC
Q 001343 626 EGGLPNLPRLRFSKEGNLLAVTTA------DNGFKILANAI 660 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~ 660 (1096)
..|. ..+.+.|.|.|+++++++. |...++|+...
T Consensus 535 ~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 535 PEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred cccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 1121 5688999999999999985 45567777643
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-08 Score=107.32 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=83.7
Q ss_pred EEecCCCcEEEEeeCCCeEEEEeeccce---eeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Ee--c-
Q 001343 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDE---LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VH--E- 951 (1096)
Q Consensus 879 ~~s~~d~~~l~s~~~dg~i~iw~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~--d- 951 (1096)
.|++.|++++.+... |+|.+-|+.... ...|...... ...++-..+...-+++++||+.+.+ .+ .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~-------~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEA-------EKADGWRPGGWQQVAYHRARDRIYLLADQRAK 271 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccc-------ccccccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence 445535666666655 889888876543 1111111000 0000111124555999999998888 32 2
Q ss_pred -------ceEEEEEcccceeccccccCCCCCCCceEEEEeeCCc-EEEEEe-cCCcEEEEecCCCceeEEE
Q 001343 952 -------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYI 1013 (1096)
Q Consensus 952 -------~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-~dg~i~vwd~~~~~~~~~~ 1013 (1096)
+.|.++|..+++.+..+.. ...+..++|+|||+ +|++.. .++.|.|+|..+++.+..+
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 5799999999999998875 45789999999999 777666 5788999999999877665
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-10 Score=111.15 Aligned_cols=352 Identities=15% Similarity=0.178 Sum_probs=210.1
Q ss_pred eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c-CCceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEE
Q 001343 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (1096)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 522 (1096)
.+.||.+.|++...-|... -+++.+.|.+++||- . .++--..+. ....+++++.+.+ +...|++|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecceEEE
Confidence 5779999999988888877 699999999999998 3 343322222 2345677777755 5578999999999988
Q ss_pred EEc----CCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC
Q 001343 523 WLY----DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1096)
Q Consensus 523 wd~----~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1096)
+.+ +.......+..|...+..+.|+.....+++++. |..+.---.+.+..+..+.-... .....+.- .
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~--~ 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFETP--ASALQFDA--L 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeecc--CCCCceee--E
Confidence 854 344445566678889999999999999999886 54443333333333322211110 00011111 1
Q ss_pred EEEEEEcCCeEEEEeCCC--CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccc
Q 001343 599 HFLAVGEDSQIKFWDMDN--VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (1096)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1096)
+.+.|...|.|.+-.+.. -.++.++.++. ..+.+++|.+....+.+|..|..+.+||+.-...
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~--~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g------------- 231 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHT--GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG------------- 231 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcc--cceEEEEEcCCCcEEEeccccCceEEEeccCCcc-------------
Confidence 445566667666665544 34555555554 4899999999999999999999999999843311
Q ss_pred cCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEE
Q 001343 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (1096)
Q Consensus 677 ~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 756 (1096)
....
T Consensus 232 ----------------------------------------------------------------------------~~~e 235 (404)
T KOG1409|consen 232 ----------------------------------------------------------------------------TAYE 235 (404)
T ss_pred ----------------------------------------------------------------------------eeee
Confidence 1112
Q ss_pred cCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceee-----ecCccccccCcc---ccccccccCC
Q 001343 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA-----SAVPQHWLPSSG---LLMANDVAGV 828 (1096)
Q Consensus 757 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~-----~~~i~~w~~~~~---~~~~~~~~g~ 828 (1096)
+.+ |.+.|..+.+.+--+.+++.+.||.|.+|+++.......+-... ......|+.... +.+.....-.
T Consensus 236 l~g---h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~c 312 (404)
T KOG1409|consen 236 LQG---HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHC 312 (404)
T ss_pred ecc---chhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhh
Confidence 223 66666667666666779999999999999987542211110000 001222322110 0000000000
Q ss_pred Cc-CCCeeeeeecCCCcEEEEecCCeEEEEEcc-------cceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEE
Q 001343 829 NL-EEAVPCIALSKNDSYVMSATGGKISLFNMM-------TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (1096)
Q Consensus 829 ~~-~~~v~~l~~s~dg~~la~~~dg~v~iwd~~-------~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw 900 (1096)
.+ ...+...+-|.-..+...|..=.+++-|.. +...++.+..-...|+.+.+.. +-.+|+|++.|..|.||
T Consensus 313 rkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~iw 391 (404)
T KOG1409|consen 313 RKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKIW 391 (404)
T ss_pred hhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEEE
Confidence 01 112222222222223333333335554431 1123444433345788998888 77799999999999999
Q ss_pred eecc
Q 001343 901 NVRV 904 (1096)
Q Consensus 901 ~~~~ 904 (1096)
|+..
T Consensus 392 d~~~ 395 (404)
T KOG1409|consen 392 DVRS 395 (404)
T ss_pred echh
Confidence 9874
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-08 Score=109.00 Aligned_cols=246 Identities=13% Similarity=0.145 Sum_probs=161.7
Q ss_pred CCCEEEEEEcCCCCEEEEEEC----CCeEEEEEccCC-CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 406 PISVSRVAWSPDGNYVGVAFT----KHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~----dg~i~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
......++++|++++|.+... ++.|..|.+... ..+..+............++++|+++. ++++...+|+|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 345677899999999998876 479999998874 333333333334556788999999994 34444468999999
Q ss_pred E-cC-CceEEE---ee----------CCCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcCCCCe-e---eEE-eCCCC
Q 001343 481 E-LS-GRKLFN---FE----------GHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGS-R---VDY-DAPGH 539 (1096)
Q Consensus 481 d-~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~-~---~~~-~~~~~ 539 (1096)
+ .. |..... +. .......++.++| +++++++.. ....|.+|+++.... + ..+ ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p--dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP--DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T--TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECC--CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9 33 544332 11 1223467888866 667776654 346899999987652 1 122 23445
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC--CCe--eeEEEcCc----Cc-cceEEEEEeCCCCEEEEEE-cCCeE
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGT--IKRTYAGF----RK-KSNGVVQFDTTQNHFLAVG-EDSQI 609 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~--~~~--~~~~~~~~----~~-~~i~~~~~~~~~~~l~~~~-~dg~i 609 (1096)
....++|+|+++++++... ..+.|.++++. ++. .+..+... .. .....+.++|+|++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7899999999999988764 37788888887 443 23333221 11 1466799999999988876 56789
Q ss_pred EEEeCC--CCe--EEEEeecCCCCCCccEEEEeCCCCEEEEEE-CCCcEEEEEcC
Q 001343 610 KFWDMD--NVN--ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANA 659 (1096)
Q Consensus 610 ~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~ 659 (1096)
.+|+++ ++. .+..+...+. ..+.++++|+|++|+++. .++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999994 233 3333433332 578999999999999887 46789999774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-09 Score=117.70 Aligned_cols=225 Identities=12% Similarity=0.073 Sum_probs=140.6
Q ss_pred cccCCCCEEEEEEcCCCCEEE---EEECC--CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-C--
Q 001343 402 FKDVPISVSRVAWSPDGNYVG---VAFTK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-D-- 473 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~---s~~~d--g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~-- 473 (1096)
+......+..-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|+|||+. |+..+ .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~--Laf~s~~~g 253 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL--LAFISDRYG 253 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE--EEEEECCCC
Confidence 333455667789999998532 33333 368888888875433 3334455667899999994 44433 2
Q ss_pred --CCcEEEEE-cC---CceEEEeeCCCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcC--C-CCeeeEEeCCCCcEEE
Q 001343 474 --DKLIKVWE-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD--T-MGSRVDYDAPGHWCTT 543 (1096)
Q Consensus 474 --d~~i~iwd-~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~--~-~~~~~~~~~~~~~i~~ 543 (1096)
|..+..|+ .. ++......++.......+|+| ||+.|+..+ .+|...+|.+. . +.....+......+..
T Consensus 254 ~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~ 331 (428)
T PRK01029 254 NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSC 331 (428)
T ss_pred CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccc
Confidence 22344477 43 233333333333445677866 667766655 56766666543 2 2223344444456778
Q ss_pred EEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEc---CCeEEEEeCCCCeEE
Q 001343 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNIL 620 (1096)
Q Consensus 544 l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~ 620 (1096)
..|+|||+.|+..... .+...|++||+.+++......+ .. .+....|+|+|+.|+..+. ...|+++|+.+++..
T Consensus 332 p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~~-~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 332 PAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-PE-NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred eeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-CC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 9999999999877642 2356899999998876544333 22 4556889999998876543 357999999887765
Q ss_pred EEeecCCCCCCccEEEEeCC
Q 001343 621 TSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~ 640 (1096)
......+ .+...+|+|-
T Consensus 409 ~Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 409 KIVIGSG---EKRFPSWGAF 425 (428)
T ss_pred EeecCCC---cccCceecCC
Confidence 5443222 4567788874
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-09 Score=107.62 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=111.0
Q ss_pred EEEEEecCCCcEEEEEEeC-C-------CcEEEEE--cCCceEEEeeC-CCCCeEEEEeeecCCCcEE--EEEECCCeEE
Q 001343 455 NDLAFAYPNKLLCVVTCGD-D-------KLIKVWE--LSGRKLFNFEG-HEAPVYSICPHHKENIQFI--FSTAIDGKIK 521 (1096)
Q Consensus 455 ~~l~~s~d~~~~~l~s~s~-d-------~~i~iwd--~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l--~s~~~dg~i~ 521 (1096)
..+.|+++|..+++.+... | +...+|. ..+.....+.- ..++|.+++|+|.+ ..+ +.|..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g--~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG--NEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCC--CEEEEEEccCCcccE
Confidence 4678899998633333311 1 2344444 44455555543 34579999998854 454 3455678999
Q ss_pred EEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEE
Q 001343 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1096)
Q Consensus 522 iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 601 (1096)
+||++ .+.+..+ +...+..+.|+|+|+++++++.. +..|.|.+||.++.+.+..+... .+..++|+|+|++++
T Consensus 87 lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~-n~~G~l~~wd~~~~~~i~~~~~~---~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFG-NLNGDLEFWDVRKKKKISTFEHS---DATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEcc-CCCcEEEEEECCCCEEeeccccC---cEEEEEEcCCCCEEE
Confidence 99996 3333333 45678899999999999998752 23578999999988888776543 467899999999999
Q ss_pred EEE------cCCeEEEEeCCCCeEEEEe
Q 001343 602 AVG------EDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 602 ~~~------~dg~i~iwd~~~~~~~~~~ 623 (1096)
+++ .|+.++||+.. |+.+...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEec
Confidence 976 37889999984 5555544
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-09 Score=114.76 Aligned_cols=192 Identities=14% Similarity=0.175 Sum_probs=153.1
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEe------c------------CCCcEEEEEEeCCCcE
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------Y------------PNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s------~------------d~~~~~l~s~s~d~~i 477 (1096)
|-..|+|....||.+++|+...++....+.....-.+.-++..|. | .+....++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456799999999999999999876554333222334445555552 1 1222378889999999
Q ss_pred EEEE-cCCceEEEee--CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 478 KVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
.+++ ..|+....+. +|.++|.++.++. +-..|.+++.|+.+..|+.........+......+.+++++|||..++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999 8888777775 6899999998754 446899999999999999999988889988888999999999999999
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC-----CCEEEEE-EcCCeEEEEeCCC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QNHFLAV-GEDSQIKFWDMDN 616 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~-~~dg~i~iwd~~~ 616 (1096)
++ .+.|.+||+++++.+..|.||.. +++++.|..+ |.+++++ ..+..+.+|-+..
T Consensus 161 ~a------s~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TA------SRQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ec------cceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98 45899999999999999999988 8999998876 6666664 3556677887654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-07 Score=96.79 Aligned_cols=286 Identities=14% Similarity=0.209 Sum_probs=181.4
Q ss_pred eeecCCCCcceE--EeecCCCceEEEEEcCCCCcEEEEEe-C--CCeEEEEecCC--CCeeecccceeecccccCccccc
Q 001343 327 TWSLDDLPRTVA--VSLHQGSTVISMDFHPSHQTLLLVGS-S--NGEITLWELAM--RDRLVSKPFKIWDMAACSLPFQA 399 (1096)
Q Consensus 327 ~~~~~~~~~~~~--~~l~h~~~V~~v~fsp~g~~llasg~-~--dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~ 399 (1096)
+|.++...+++. ....+.+.++-++|+|++++ |.++- . +|.|.-|.++. |+...-. .
T Consensus 20 v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~-LY~v~~~~~~ggvaay~iD~~~G~Lt~ln---------------~ 83 (346)
T COG2706 20 VFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRH-LYVVNEPGEEGGVAAYRIDPDDGRLTFLN---------------R 83 (346)
T ss_pred EEEEeCcccccchhhhccccCCCceEEECCCCCE-EEEEEecCCcCcEEEEEEcCCCCeEEEee---------------c
Confidence 788876555444 33458889999999999985 55543 3 57888888875 4443210 0
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEccCCCccccceeecccccC----------EEEEEEecCCCcEEE
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGA----------VNDLAFAYPNKLLCV 468 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~l~~h~~~----------v~~l~~s~d~~~~~l 468 (1096)
..+.+ .+-+.++++++|++|+++.. -|.|.++-++....+........|.+. +....|.|+++ +|
T Consensus 84 ~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~--~l 159 (346)
T COG2706 84 QTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR--YL 159 (346)
T ss_pred cccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC--EE
Confidence 11222 23488999999999998865 489999999663333332233456666 88999999999 55
Q ss_pred EEEe-CCCcEEEEE-cCCceEEEe---eCCCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcCCCCe-eeEEeC-----
Q 001343 469 VTCG-DDKLIKVWE-LSGRKLFNF---EGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGS-RVDYDA----- 536 (1096)
Q Consensus 469 ~s~s-~d~~i~iwd-~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~-~~~~~~----- 536 (1096)
++++ .-..|.+|+ .+|+....- -.....-..|.|+| ++++....+ -+++|.+|.++.... ...+..
T Consensus 160 ~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp--n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP--NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred EEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC--CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 5554 234788999 666543221 12344567899988 556665554 589999999887522 222211
Q ss_pred ----CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC--CCeeeEE-EcCcCccceEEEEEeCCCCEEEEEEcC-Ce
Q 001343 537 ----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGED-SQ 608 (1096)
Q Consensus 537 ----~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~--~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~ 608 (1096)
...+...+.+++||++|.++.. +...|.++.+. ++++... .....+.......+++.+++|+++..+ ..
T Consensus 238 ~dF~g~~~~aaIhis~dGrFLYasNR---g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGRFLYASNR---GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred cccCCCCceeEEEECCCCCEEEEecC---CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc
Confidence 1236789999999999999754 34577777654 3432211 111112235668899999999998854 46
Q ss_pred EEEEeCC--CCeEEEEeecCCCCCCccEEEEe
Q 001343 609 IKFWDMD--NVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 609 i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
|.+|.++ +|++...... .......|+.|.
T Consensus 315 i~vf~~d~~TG~L~~~~~~-~~~p~Pvcv~f~ 345 (346)
T COG2706 315 ITVFERDKETGRLTLLGRY-AVVPEPVCVKFL 345 (346)
T ss_pred EEEEEEcCCCceEEecccc-cCCCCcEEEEEc
Confidence 8888765 4554433331 112245566653
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-08 Score=105.02 Aligned_cols=264 Identities=13% Similarity=0.137 Sum_probs=166.0
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC----------CCeEEEEEcc
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT----------KHLIQLYSYA 436 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~----------dg~i~vwd~~ 436 (1096)
++|.+.|..+++.+.... .|.. + ..+ +||||+.|+++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~------------------~G~~-P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD------------------GGFL-P-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEE------------------ccCC-C-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 899999999988775411 1111 1 124 9999999888765 6799999999
Q ss_pred CCCccccceeecc-----cccCEEEEEEecCCCcEEEEEE--eCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCC
Q 001343 437 GSNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI 508 (1096)
Q Consensus 437 ~~~~~~~~~~l~~-----h~~~v~~l~~s~d~~~~~l~s~--s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 508 (1096)
+.+.+..+. +.. .......++++|||+. |+.. +.+..|.+.| .+++.+..+.--.. . .+ + +..+.
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~--l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~-~v-y-~t~e~ 158 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKT--LLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-Y-HI-F-PTAND 158 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCE--EEEecCCCCCEEEEEECCCCcEEEEEeCCCC-c-EE-E-EecCC
Confidence 988776432 111 1223458899999994 4433 3489999999 88888887764221 1 11 1 11122
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeE-----EeCCCCcE-EEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCCC-----ee
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVD-----YDAPGHWC-TTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEG-----TI 576 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i-~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~~-----~~ 576 (1096)
.+ .+-+.||......++....... +.....++ ..-.|++ +|+++++.. +|.|++.|+... +.
T Consensus 159 ~~-~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 159 TF-FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred cc-EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecce
Confidence 22 2334566655544433222111 11100000 0013455 888777765 689999996432 22
Q ss_pred eEEEcCc------CccceEEEEEeCCCCEEEEEE----------cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 577 KRTYAGF------RKKSNGVVQFDTTQNHFLAVG----------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 577 ~~~~~~~------~~~~i~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
...+... .......++++++++.+++.. ..+.|.++|..+++.+..+.... .+..++++||
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~D 309 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQD 309 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCC
Confidence 2222211 111334499999999888843 22579999999999999887643 6899999999
Q ss_pred CC-EEEEEE-CCCcEEEEEcCCCccccccc
Q 001343 641 GN-LLAVTT-ADNGFKILANAIGLRSLRAV 668 (1096)
Q Consensus 641 ~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~ 668 (1096)
++ +|++.. .++.|.++|..++ +.++.+
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~-k~i~~i 338 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETG-KELSSV 338 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCC-eEEeee
Confidence 99 777666 5788999999888 444444
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-09 Score=112.84 Aligned_cols=192 Identities=18% Similarity=0.311 Sum_probs=149.2
Q ss_pred CCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE------cC-----------
Q 001343 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW------SP----------- 416 (1096)
Q Consensus 354 p~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------sp----------- 416 (1096)
|-+. ++|....||.++||++.+++...... | ...-.+..++..| +|
T Consensus 3 ~~~~-~~A~~~~~g~l~iw~t~~~~~~~e~~-----------p-----~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~ 65 (541)
T KOG4547|consen 3 PALD-YFALSTGDGRLRIWDTAKNQLQQEFA-----------P-----IASLSGTCTYTKWGLSADYSPMKWLSLEKAKK 65 (541)
T ss_pred chhh-eEeecCCCCeEEEEEccCceeeeeec-----------c-----chhccCcceeEEEEEEeccchHHHHhHHHHhh
Confidence 3344 69999999999999999887654311 0 0111233333333 22
Q ss_pred ---CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC
Q 001343 417 ---DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1096)
Q Consensus 417 ---d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 492 (1096)
|-..++-|...|.|.+|++..|+....+ +-..|.+.|.++.++.+-. .|.|++.|+.+..|+ ..++.++.+++
T Consensus 66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 66 ASLDTSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred ccCCceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeecc
Confidence 3346777888999999999998765543 3457999999999998888 899999999999999 88899999999
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC-----CCEEEEEeeccCCCCeEE
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-----~~~l~~~~~~~~~~~~i~ 567 (1096)
....+.+++++| |+..+++++ +.|++||+++.+.+..+.+|.++|.++.|.-+ |.++++... .+..+.
T Consensus 143 ~~~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~ 215 (541)
T KOG4547|consen 143 QKPLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGIT 215 (541)
T ss_pred CCCccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---ccccee
Confidence 999999999876 678888876 79999999999999999999999999999877 777776543 255566
Q ss_pred EEeCC
Q 001343 568 EWNES 572 (1096)
Q Consensus 568 iwd~~ 572 (1096)
+|-..
T Consensus 216 ~w~v~ 220 (541)
T KOG4547|consen 216 VWVVE 220 (541)
T ss_pred EEEEE
Confidence 66543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-09 Score=106.46 Aligned_cols=255 Identities=12% Similarity=0.175 Sum_probs=156.6
Q ss_pred eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC-CCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM-DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
..++.+.|+.+ .++....-|..+-+++.+.|.++++|-- +.++....+.... ..+++++.+.++...|++|-..|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecceE
Confidence 34566777776 6666666777788999999999999964 4455555544332 3478999999999999999999999
Q ss_pred EEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccC
Q 001343 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1096)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 733 (1096)
.-+.+..........+.. ..+..++..+.|+..-..+++...+.-..+. +.-
T Consensus 93 tefs~sedfnkm~~~r~~--~~h~~~v~~~if~~~~e~V~s~~~dk~~~~h--------------------------c~e 144 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDY--LAHQARVSAIVFSLTHEWVLSTGKDKQFAWH--------------------------CTE 144 (404)
T ss_pred EEEEhhhhhhhcchhhhh--hhhhcceeeEEecCCceeEEEeccccceEEE--------------------------eec
Confidence 999876653322222211 1223445566666555555444332111100 000
Q ss_pred CCCCccceeeeeeecCCceEE-EEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccc
Q 001343 734 VTDKPKPWQLAEIVDSGQCRL-VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (1096)
Q Consensus 734 ~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~ 812 (1096)
.+..+--|.+.......++.. ..+.| .|..+|+.+.+-+.+-.++
T Consensus 145 ~~~~lg~Y~~~~~~t~~~~d~~~~fvG--d~~gqvt~lr~~~~~~~~i-------------------------------- 190 (404)
T KOG1409|consen 145 SGNRLGGYNFETPASALQFDALYAFVG--DHSGQITMLKLEQNGCQLI-------------------------------- 190 (404)
T ss_pred cCCcccceEeeccCCCCceeeEEEEec--ccccceEEEEEeecCCceE--------------------------------
Confidence 001111111110000000000 01111 0333333333333222111
Q ss_pred cccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceE-EEeecCCCCCeeEEEEecCCCcEEEE
Q 001343 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAI 890 (1096)
Q Consensus 813 w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~-~~~~~~h~~~i~~l~~s~~d~~~l~s 890 (1096)
..+.| |.+.+.+++|.+..++|.+|. |..|.+||+..++- ...+.+|...|..+...+ --+.+++
T Consensus 191 ----------~~~~~--h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S 257 (404)
T KOG1409|consen 191 ----------TTFNG--HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQLIS 257 (404)
T ss_pred ----------EEEcC--cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hheeeee
Confidence 13455 899999999999999999998 78899999954433 346779999999999888 7889999
Q ss_pred eeCCCeEEEEeeccce
Q 001343 891 GTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 891 ~~~dg~i~iw~~~~~~ 906 (1096)
++.||.|.+|+++...
T Consensus 258 ~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 258 CGEDGGIVVWNMNVKR 273 (404)
T ss_pred ccCCCeEEEEecccee
Confidence 9999999999987654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=120.05 Aligned_cols=244 Identities=13% Similarity=0.195 Sum_probs=170.7
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC-Cccc---cceeecccccCEEEEEEecCCCcEEEEEEeCCCc
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~-~~~~---~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~ 476 (1096)
.+.||+..|..++--.+.+-+++++.|.+|++|.+... ..+. ...+++.|+.+|.++.|..+.+ .++++ ||.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 48899999999988888889999999999999998742 2222 3446889999999999999988 66655 899
Q ss_pred EEEEE-cCCceEEEee--CCCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEEcCCCCeeeEEe-----CCCCcEEEEEEc
Q 001343 477 IKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGSRVDYD-----APGHWCTTMLYS 547 (1096)
Q Consensus 477 i~iwd-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l~~s 547 (1096)
|.+|| .-|+.+.... ...+.+..+...+.-+...++.| +...+|+++|.+..+-...++ +.+..+.++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999 8887775432 11222333332234344556555 788999999999877665543 344578999999
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEE-EeCCCCeEEEEeecC
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF-WDMDNVNILTSTDAE 626 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~ 626 (1096)
+.|+.++++-. .|.|.+.|.++|+.+...+...- ....++ .|....++....|.++.+ |..-.+.........
T Consensus 886 ~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 886 DKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred cCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 99999998876 99999999999998877665432 111122 355567777778888888 988777655444322
Q ss_pred CCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.. +.. -...-|.-++++.....+.+|.-
T Consensus 960 pe--pah--flqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 960 PE--PAH--FLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred Cc--chh--hhhccCceeEEeccCcEEEEEec
Confidence 11 111 01123556777776667777753
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6e-10 Score=132.51 Aligned_cols=200 Identities=19% Similarity=0.295 Sum_probs=158.1
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
.++-..|.++.=+|... +.+||+.||.|++|.+..++.+.. |+ -.|. +.|+.+.|+.+|+.
T Consensus 2205 k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk 2265 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNK 2265 (2439)
T ss_pred ecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCc
Confidence 34667899999999998 588999999999999998887753 11 1223 78999999999999
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe---CCCcEEEEE--cCCceEEEeeCCCC
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE--LSGRKLFNFEGHEA 495 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s---~d~~i~iwd--~~~~~~~~~~~~~~ 495 (1096)
+.++..||.+.+|.+.. +.+...+.|.....++.|-. . .+++++ .++.+.+|| ..+..-..-..|.+
T Consensus 2266 ~~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred eeeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence 99999999999999872 33335778999999999976 3 566654 568999999 44443333388999
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
.++++++.|. -+.|++|+.+|.|++||++..+.+..+.. +. ...++++++. .|.++||++....
T Consensus 2338 gaT~l~~~P~--~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2338 GATVLAYAPK--HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLSEFG 2401 (2439)
T ss_pred CceEEEEcCc--ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEccccc
Confidence 9999999884 48999999999999999987766655433 33 4557777776 9999999999888
Q ss_pred eeEEEcCc
Q 001343 576 IKRTYAGF 583 (1096)
Q Consensus 576 ~~~~~~~~ 583 (1096)
.++++...
T Consensus 2402 ll~~~p~e 2409 (2439)
T KOG1064|consen 2402 LLHTFPSE 2409 (2439)
T ss_pred hhhcCchh
Confidence 77777643
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-08 Score=96.66 Aligned_cols=269 Identities=12% Similarity=0.069 Sum_probs=167.3
Q ss_pred CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC---CCC-EEEEEECCCeEEEEEccCCCcc
Q 001343 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DGN-YVGVAFTKHLIQLYSYAGSNDL 441 (1096)
Q Consensus 366 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---d~~-~l~s~~~dg~i~vwd~~~~~~~ 441 (1096)
.|.+.+|++...+...-. .+..-..+.+..+.|+. +|. .|+-+..+|.|.++........
T Consensus 45 ~Gkl~Lys~~d~~~~~l~----------------~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLD----------------TLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCccc----------------eeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 467778887665543210 11122355677788864 455 5666777899999987643322
Q ss_pred ccceeeccccc---CEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE--EEeeCCCCCeEEEEeeecCCCcEEEEEE
Q 001343 442 RQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1096)
Q Consensus 442 ~~~~~l~~h~~---~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (1096)
..+..+..-.- ...++.|++.+. .++++-.+|.+.+-+ ...... +.++.|+-+.+...|+.. +.+++++|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGg 185 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGG 185 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecC
Confidence 22112222222 245778898888 688888899999766 444443 478999999999998754 447999999
Q ss_pred CCCeEEEEEcCCCC-eeeE-EeCCCCcEEEEEEcC-CCCEEEEEeeccCCCCeEEEEeCC-CCeeeEEEcCcCccceEEE
Q 001343 516 IDGKIKAWLYDTMG-SRVD-YDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVV 591 (1096)
Q Consensus 516 ~dg~i~iwd~~~~~-~~~~-~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~ 591 (1096)
.|+.+..||++... .+.. ...|...|.++.-+| .+.++++|+. +..|++||.+ .++++..-. ....|..+
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~--v~GGVWRi 259 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAK--VGGGVWRI 259 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCc--cccceEEE
Confidence 99999999999433 3332 345667888888876 5778899987 8899999998 455554332 22478888
Q ss_pred EEeCCCC-EEEEEEcCCeEEEEeCCCCeEE-----EEeecCCCCCCccEEEEeCCCCEEEEEE-CCCcEE-EEEcCCC
Q 001343 592 QFDTTQN-HFLAVGEDSQIKFWDMDNVNIL-----TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFK-ILANAIG 661 (1096)
Q Consensus 592 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~-iwd~~~~ 661 (1096)
.++|.-. .++.+..-+..+|-+...+... .....|. +-++.-.|......+|+++ .|+.++ +|-.-++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd--Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHD--SLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccchheeeecccccc--ceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 8888542 2233333333556665543221 2222222 1334444543345677765 355544 6654443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.5e-08 Score=95.04 Aligned_cols=189 Identities=17% Similarity=0.125 Sum_probs=134.9
Q ss_pred CCceEEEEEcC---CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCC---CEEEEEEcCC
Q 001343 344 GSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPD 417 (1096)
Q Consensus 344 ~~~V~~v~fsp---~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spd 417 (1096)
+..+..+.|.- +|...++-+..+|.|.++.....+.... ++ + +....- .-.++.|++.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~-----ls~~ki~~~~~lslD~~~~ 132 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------G-----LSSKKISVVEALSLDISTS 132 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------c-----cchhhhhheeeeEEEeecc
Confidence 34566666653 3443566677789999988654332211 00 0 111111 2457899999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c-CCceEEE-eeCCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFN-FEGHE 494 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~-~~~~~ 494 (1096)
+..++++..+|.+.+-+..... +.....++.|.-+.+...|+..... ++.+||.|+.+..|| . .++.+.. .+.|.
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~ 210 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT 210 (339)
T ss_pred CceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeee
Confidence 9999999999999865544432 3333468899999999999987766 899999999999999 4 5566655 66789
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 551 (1096)
..|.++.-+|. .+.+|++|+.|-.|++||.++......-..-.+.|..+..+|.-.
T Consensus 211 ~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 211 SGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred cceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 99999987654 568999999999999999996655554444457899999988543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=129.35 Aligned_cols=201 Identities=12% Similarity=0.214 Sum_probs=165.0
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
++.|-..|.++.=+|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|+ .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4445667888988999999999999999999999988877655433 33 8999999999999 788889999999999
Q ss_pred cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE---CCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
...++....+.|........|.. ..+++++ .++.+.+||...... -.....|.+.++++++-|..+.+++|+
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 77888888999999888888854 3456553 578899998654322 234478888999999999999999999
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
. +|.|++||++..+.+++++. +. ...+|++|+..|.++||++.....+..+..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 8 99999999998888777664 33 457899999999999999998877776654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.3e-07 Score=101.04 Aligned_cols=263 Identities=14% Similarity=0.115 Sum_probs=166.2
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
.+++++.+|.|.-+|..+|+.+-...+. ..... ... .++..+++++.++.+..+|..+|
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~----------------~~~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG 125 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLD----------------ERLSG---GVG--ADGGLVFVGTEKGEVIALDAEDG 125 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCC----------------CCccc---ceE--EcCCEEEEEcCCCEEEEEECCCC
Confidence 4777788999999999999876431110 00111 111 25678888889999999999998
Q ss_pred CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE-----EEEeeecCCCcEEE
Q 001343 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY-----SICPHHKENIQFIF 512 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~l~ 512 (1096)
+.+.... + .+.+.+.-... +. .++.++.++.++.|| .+|+.+..+......+. +... . + ..++
T Consensus 126 ~~~W~~~-~---~~~~~~~p~v~-~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~-~-~~v~ 194 (377)
T TIGR03300 126 KELWRAK-L---SSEVLSPPLVA-NG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--A-D-GGVL 194 (377)
T ss_pred cEeeeec-c---CceeecCCEEE-CC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--E-C-CEEE
Confidence 8764321 1 12222211112 33 466677899999999 89998877654332211 1111 1 2 3678
Q ss_pred EEECCCeEEEEEcCCCCeeeEEeCCCC----c------E-EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 513 STAIDGKIKAWLYDTMGSRVDYDAPGH----W------C-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 513 s~~~dg~i~iwd~~~~~~~~~~~~~~~----~------i-~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
.+..+|.+..+|.++++.......... . + .+..+ .+..+++++. ++.++.||..+|+.+....
T Consensus 195 ~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~----~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 195 VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSY----QGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEc----CCEEEEEECCCCcEEEeec
Confidence 888899999999988877654332110 0 0 11111 2456666655 8899999999998876655
Q ss_pred CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
... ..... ..+..+++++.+|.++.+|..+++.+......... ....... .+..+++++.+|.+.++|..++
T Consensus 269 ~~~---~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~-~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 269 ASS---YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR-QLTAPAV--VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred cCC---ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC-ccccCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 211 11112 24678888889999999999999887665322111 1222222 4668899999999999999888
Q ss_pred ccccccc
Q 001343 662 LRSLRAV 668 (1096)
Q Consensus 662 ~~~~~~~ 668 (1096)
+.+..+
T Consensus 341 -~~~~~~ 346 (377)
T TIGR03300 341 -SFVARL 346 (377)
T ss_pred -CEEEEE
Confidence 443333
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-07 Score=103.78 Aligned_cols=259 Identities=12% Similarity=0.098 Sum_probs=160.3
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEc
Q 001343 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSY 435 (1096)
Q Consensus 356 g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~ 435 (1096)
+. .+++++.+|.+..+|..+|+.+-... + .+.+.+.-.. .+..++.++.++.+..||.
T Consensus 105 ~~-~v~v~~~~g~l~ald~~tG~~~W~~~-----------------~---~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~ 162 (377)
T TIGR03300 105 GG-LVFVGTEKGEVIALDAEDGKELWRAK-----------------L---SSEVLSPPLV-ANGLVVVRTNDGRLTALDA 162 (377)
T ss_pred CC-EEEEEcCCCEEEEEECCCCcEeeeec-----------------c---CceeecCCEE-ECCEEEEECCCCeEEEEEc
Confidence 44 46678889999999999998764311 0 1111111000 3456777888999999999
Q ss_pred cCCCccccceeecccccCE-----EEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC-------CeEEEEe
Q 001343 436 AGSNDLRQHSQIDAHVGAV-----NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA-------PVYSICP 502 (1096)
Q Consensus 436 ~~~~~~~~~~~l~~h~~~v-----~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~-------~v~~~~~ 502 (1096)
++|+.+-.. ......+ ...... + . .++.+..++.+..+| .+|+.+........ ....+.-
T Consensus 163 ~tG~~~W~~---~~~~~~~~~~~~~sp~~~-~-~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~ 235 (377)
T TIGR03300 163 ATGERLWTY---SRVTPALTLRGSASPVIA-D-G--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDG 235 (377)
T ss_pred CCCceeeEE---ccCCCceeecCCCCCEEE-C-C--EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCC
Confidence 998765432 1111111 111222 2 3 567788899999999 88887755431100 0001111
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
.|.-.+..+++++.+|.+..||..+++......... ..... .++..+++++. ++.++.+|..+++.+.....
T Consensus 236 ~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p~--~~~~~vyv~~~----~G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 236 DPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGPA--VDDNRLYVTDA----DGVVVALDRRSGSELWKNDE 307 (377)
T ss_pred ccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCce--EeCCEEEEECC----CCeEEEEECCCCcEEEcccc
Confidence 111123578888899999999999888776554221 12222 24566776654 89999999999988766532
Q ss_pred cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 583 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
........... .+..+++++.+|.|+++|..+++.+..+..+... ......+. + ..|+.++.||.|..|
T Consensus 308 ~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 308 LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-IASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-cccCCEEE-C-CEEEEEeCCceEEEe
Confidence 22212222222 3678999999999999999999999888765431 11222222 3 468889999988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-09 Score=109.67 Aligned_cols=300 Identities=10% Similarity=0.097 Sum_probs=190.1
Q ss_pred ecCCCCcceEEe---ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCC-eeecccceeecccccCcccccccccc
Q 001343 329 SLDDLPRTVAVS---LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 329 ~~~~~~~~~~~~---l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+.+.+....++. .+|...|..++--.+.+. ++++++|.+|++|.+.... .+.+ ..|. -++..
T Consensus 717 dt~~ln~~~irL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t--------saCQ-----fTY~a 782 (1034)
T KOG4190|consen 717 DTDNLNFDHIRLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT--------SACQ-----FTYQA 782 (1034)
T ss_pred CCcccccceeeeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc--------ceee-----eEhhh
Confidence 334444433433 459999999987777664 8899999999999987532 2211 1111 13667
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC-CCcEEEEEEeCCCcEEEEE-c
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
|+.+|..+.|-.+.++++++ ||-|.+||.--|..+.+...-..| +.+..+.-.++ .+.++++.|+...+|+++| .
T Consensus 783 Hkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 783 HKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDAR 859 (1034)
T ss_pred ccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecc
Confidence 99999999999999999876 889999998877766543222222 23333333333 3333555568899999999 8
Q ss_pred CCceEEEeeC-----CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 483 SGRKLFNFEG-----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 483 ~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
.++-...++- ...-+.++++.+ .|+.++++-.+|.|.+.|.++++.+..+..-......++- |..+.++...
T Consensus 860 sce~~~E~kVcna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sa 936 (1034)
T KOG4190|consen 860 SCEWTCELKVCNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSA 936 (1034)
T ss_pred cccceeeEEeccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhc
Confidence 8776666543 345577888866 5579999999999999999998877665544333333332 4445555444
Q ss_pred eccCCCCeEEE-EeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC----CeEEEEeecCCCCCCc
Q 001343 558 TSKDGDSFLVE-WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLPNL 632 (1096)
Q Consensus 558 ~~~~~~~~i~i-wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v 632 (1096)
. +..+.+ |...++....+.+.... +.. ....-|..++++.....+.+|--.. ...+..++...-.+..
T Consensus 937 l----dHslaVnWhaldgimh~q~kpppe-pah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~l 1009 (1034)
T KOG4190|consen 937 L----DHSLAVNWHALDGIMHLQDKPPPE-PAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTL 1009 (1034)
T ss_pred c----cceeEeeehhcCCeeeeccCCCCc-chh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCcc
Confidence 3 777777 87766665544443322 111 1112355677777667777775321 1223333333333466
Q ss_pred cEEEEeCCCCEEEEEECCCcEEE
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKI 655 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~i 655 (1096)
++++.-|=..-+..|...|.|.+
T Consensus 1010 Tala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1010 TALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ceeeeccccchhhccCCCCceee
Confidence 77888786666677777787765
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.5e-09 Score=100.84 Aligned_cols=240 Identities=17% Similarity=0.218 Sum_probs=149.4
Q ss_pred cEEEEEEecCC--ceEEEeecCCeEEEeeccCCcc-------------CC-CCceeeecCccccccCccc-cccc---cc
Q 001343 766 KVVRLLYTNSA--VGLLALGSNGVQKLWKWHRNEQ-------------NP-SGKATASAVPQHWLPSSGL-LMAN---DV 825 (1096)
Q Consensus 766 ~i~~l~~s~~~--~~l~~~~~dg~v~vw~~~~~~~-------------~~-~g~~~~~~~i~~w~~~~~~-~~~~---~~ 825 (1096)
.|..+.|..++ ..++.++.|.++++|.+..... +| .|.......+++-.+..-. .+.. ..
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 55566665443 4578888999999999865521 11 1111111122211111110 0000 01
Q ss_pred cCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEccc--ce-EEEeecCCC-----CCeeEEEEecCCCcEEEEeeCCCeE
Q 001343 826 AGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMT--FK-VMTTFMSPP-----PASTFLAFHPQDNNIIAIGTEDSTI 897 (1096)
Q Consensus 826 ~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~--~~-~~~~~~~h~-----~~i~~l~~s~~d~~~l~s~~~dg~i 897 (1096)
...+|...|.++.|..|.+.+.++.+=+|-+|++.- +. .+--++.|. ..|++..|+|...+.+...+..|.|
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred ccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 113488889999999999999999999999999742 21 233344554 3578899999777788888999999
Q ss_pred EEEeeccceeeeeeccccccc-cceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccc-eeccccccCC---
Q 001343 898 HIYNVRVDELCVWSIDTWEKR-KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM-ERIRQWTPQD--- 972 (1096)
Q Consensus 898 ~iw~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~--- 972 (1096)
++-|++...+|.-.....+.. .+.....+.+-. +.|..++|++.|+++++-.--++.|||+.-. .++.++.-|.
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~ 325 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLM 325 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHH
Confidence 999999776554222111110 000011111111 5889999999999999977789999999744 3444432110
Q ss_pred ------CCCCCc---eEEEEeeCCcEEEEEecCCcEEEEecCC
Q 001343 973 ------ALSAPI---SCAVYSCNSQLVFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 973 ------~~~~~i---~~l~~s~dg~~la~~~~dg~i~vwd~~~ 1006 (1096)
...+.| ..+.||.|.+.+.+|+.....-+|-.++
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 013333 3478899999999999988888887543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.5e-07 Score=101.49 Aligned_cols=335 Identities=13% Similarity=0.104 Sum_probs=184.6
Q ss_pred EEEEEEcCCCCEEEEEEC----CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 409 VSRVAWSPDGNYVGVAFT----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
-+-.+|+|...++|+++- .|+|-||- ++|++-+.. +.+-| +++++|+|..- +|+.|=.-|.+.+|. .+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~h---atSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPVH---ATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-cccee---hhhhccChHHH--HHhhccccceeEEEecCC
Confidence 344689999999998864 47888884 556543321 22233 56799999877 888898899999999 44
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC--C--CC--cEEEEEEcCCCCE-----
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--P--GH--WCTTMLYSADGSR----- 552 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~--~~--~i~~l~~s~~~~~----- 552 (1096)
.+.-.....|..+|..+.|++ +|..++++..-|.+.+|..+..+....... | +. ...+...++++.-
T Consensus 91 ~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 444444567999999999977 668999999999999998774433322111 1 11 2334444565432
Q ss_pred -EEEEeeccCCCCeEE-EEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCC
Q 001343 553 -LFSCGTSKDGDSFLV-EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 553 -l~~~~~~~~~~~~i~-iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
.++.+. +..+- .++.+.....+.. . -.-.|+|..++.++.+|+|+-.|- .|..........
T Consensus 169 KaaVtgD----e~alD~~fnwk~~~a~rs~-~--------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS--- 231 (1416)
T KOG3617|consen 169 KAAVTGD----ESALDEPFNWKESLAERSD-E--------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDS--- 231 (1416)
T ss_pred hhhccCc----hhhhcccccCccchhhccc-c--------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccc---
Confidence 122221 21111 2221110000000 0 112467888999999999988774 444444443322
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEc-CCCccc---cccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEecc
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILAN-AIGLRS---LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~ 706 (1096)
-..+-|.+....+++.-.+-.+.++-. .+|... ...+.+....
T Consensus 232 -~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Gg-------------------------------- 278 (1416)
T KOG3617|consen 232 -EVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGG-------------------------------- 278 (1416)
T ss_pred -hHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCC--------------------------------
Confidence 133455554444444444333333322 222100 0000000000
Q ss_pred CCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCC
Q 001343 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1096)
Q Consensus 707 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 786 (1096)
..|. ++.+...|.++ . ..-.-+. ....+.|++++..+..+.++...|
T Consensus 279 -----------------rqGg-iA~sEssGvLr---~------~eKyg~e------~ge~~~c~cY~~~~~~l~agt~~g 325 (1416)
T KOG3617|consen 279 -----------------RQGG-IACSESSGVLR---K------SEKYGLE------LGEGILCMCYGEKEIRLWAGTKEG 325 (1416)
T ss_pred -----------------ccCc-ccccccccccc---C------Ccchhhh------cCCceEEEEEeccceEEEecccCC
Confidence 0000 12222222111 0 0001111 456799999999999899999999
Q ss_pred eEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec
Q 001343 787 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 850 (1096)
Q Consensus 787 ~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~ 850 (1096)
.+.+|.-....+.+ ...+..|.+.+... ..+.|+.+.|+|-...++.-+
T Consensus 326 nv~~w~~v~~~f~g------~p~~d~w~l~~~~e---------~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 326 NVTIWLDVNKGFQG------DPTIDVWTLNGKRE---------SLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred cEEEeeecCccccC------CCCcceEEecCchh---------hccceEEEEeccccchhhhhh
Confidence 99999743332222 12456676554332 346788888888655555444
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-06 Score=109.98 Aligned_cols=245 Identities=15% Similarity=0.131 Sum_probs=160.2
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEEccCCCccccceee-----------cccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 410 SRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-----------DAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 410 ~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l-----------~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
..++++++ ++.+++-+.++.|++||..+. .+...... .++-.....+++.+++.. ++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCceE
Confidence 46889875 556666667789999998653 22211000 001123588999998873 33444456789
Q ss_pred EEEEcCCceEEEeeCC-----------------CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC---
Q 001343 478 KVWELSGRKLFNFEGH-----------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--- 537 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--- 537 (1096)
+++|..+..+.++.+- -..-+.+++++. ++.++++.+.++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 9999544555555321 012356788663 34677777888999999987654321 1111
Q ss_pred ------------CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc------------C--------c
Q 001343 538 ------------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------R--------K 585 (1096)
Q Consensus 538 ------------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------~--------~ 585 (1096)
......++++|+++.|+++.. +++.|++||+.++.......+. . -
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 124567999999997776543 3789999999876532111000 0 0
Q ss_pred cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC-----------CCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----------GGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 586 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
.....++++++|+.+++-+.++.|++||..++......... ........++++++|+++++-+.++.|+
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 02346889999998888889999999999887665433211 1112567899999999999888999999
Q ss_pred EEEcCCC
Q 001343 655 ILANAIG 661 (1096)
Q Consensus 655 iwd~~~~ 661 (1096)
+||+.++
T Consensus 884 vid~~~~ 890 (1057)
T PLN02919 884 YLDLNKG 890 (1057)
T ss_pred EEECCCC
Confidence 9999876
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-06 Score=108.66 Aligned_cols=257 Identities=14% Similarity=0.137 Sum_probs=158.6
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC-
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT- 426 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~- 426 (1096)
..+++++++..++++-+..+.|.+||.. +..+.... ....... .....-..+-.....|+++++++.|+++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig----~~g~~G~-~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIG----STGEEGL-RDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEc----cCCCcCC-CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 4678988644477777788999999975 44332100 0000000 000000112234678999999887766654
Q ss_pred CCeEEEEEccCCCcccccee-------eccc-------ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee
Q 001343 427 KHLIQLYSYAGSNDLRQHSQ-------IDAH-------VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~-------l~~h-------~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 491 (1096)
++.|+++|..++.. ..+.. ..+. -...+.++|+|++.. ++++.+.++.|++|| .++. +..+.
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~-v~~~~ 721 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGV-TRVFS 721 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCe-EEEEe
Confidence 56899999876532 21100 0000 123468999995443 677888899999999 5543 33332
Q ss_pred CC---------------CCCeEEEEeeecCCCc-EEEEEECCCeEEEEEcCCCCeeeEEeC-------------C-----
Q 001343 492 GH---------------EAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDA-------------P----- 537 (1096)
Q Consensus 492 ~~---------------~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~----- 537 (1096)
+. -.....+++++ ++. ++++.+.++.|++||++++.......+ .
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 21 11245678866 445 556667789999999987653321100 0
Q ss_pred ---CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc------------CccceEEEEEeCCCCEEEE
Q 001343 538 ---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLA 602 (1096)
Q Consensus 538 ---~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~ 602 (1096)
......++++++|+.+++-.. ++.|++||..++......... .-.....++++++|+.+++
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~----N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSY----NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECC----CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 012468899999987666654 889999999887665432110 0013556899999998888
Q ss_pred EEcCCeEEEEeCCCCeE
Q 001343 603 VGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 603 ~~~dg~i~iwd~~~~~~ 619 (1096)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999988765
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-08 Score=107.77 Aligned_cols=265 Identities=17% Similarity=0.300 Sum_probs=178.3
Q ss_pred eeecCCCCcceEEeecCCC--ceEEEEEcCCCC-cEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGS--TVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~--~V~~v~fsp~g~-~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
+.++++ |...-+-++|-. .|..+.|||... -+-++......-.||++....... + .-++.
T Consensus 49 i~dld~-p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a---I-------------ef~lh 111 (1081)
T KOG0309|consen 49 IIDLDD-PFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA---I-------------EFVLH 111 (1081)
T ss_pred EEeccC-CCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccc---e-------------EEEEe
Confidence 445544 444455555544 588889988643 145555667778899986543221 1 12478
Q ss_pred cCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-
Q 001343 404 DVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 404 ~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
||+..|+.+.|.|. -..||+++.|..+..||+.+.... +..+..-......++|+.... .+.+.+..+.|++||
T Consensus 112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--FYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDL 187 (1081)
T ss_pred cCccceeccccCCCCCcceeeccccccceeeeccCCCcc--eeeeecccccCceeeecccCc--chhhhccCCceEEEec
Confidence 99999999999995 558899999999999999875432 223444556678899998776 566677788999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-CCCCcEEEEEEcCCCCEEEEEeec
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
..+.++..+++|...|+.+.|..... ..+.+.+.||+|++||.+......... ....+|..-.+.|-|.-...--.
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~- 265 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM- 265 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc-
Confidence 56678899999999999998865433 468899999999999998655443322 23346666666665543332111
Q ss_pred cCCCCeEEE---------EeCCC-CeeeEEEcCcCccceEEEEEeC----------CCCEEEEEEcCCeEEEEeCCC
Q 001343 560 KDGDSFLVE---------WNESE-GTIKRTYAGFRKKSNGVVQFDT----------TQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 560 ~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
.|+..+.+ |+..+ .+.+.+|.||.+ .|....|-. ..-.|++-+.|..+++|-+.+
T Consensus 266 -~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 266 -VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred -cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 01223333 44333 467899999987 443222221 123689999999999998864
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-08 Score=107.27 Aligned_cols=293 Identities=13% Similarity=0.179 Sum_probs=189.0
Q ss_pred EeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC--CCCEEEEEEcC
Q 001343 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWSP 416 (1096)
Q Consensus 339 ~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp 416 (1096)
..+.-.+++.++..+|.|+- +|.++.-|. .|-|+...-... ..-.| .-.|..+.|||
T Consensus 19 lsl~v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~pp-------------------r~l~h~tpw~vad~qws~ 77 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTPP-------------------RWLHHITPWQVADVQWSP 77 (1081)
T ss_pred eEEEecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCCc-------------------eeeeccCcchhcceeccc
Confidence 34455678999999999995 777765554 344554322110 01112 22466788887
Q ss_pred CC--CEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c-CCceEEEeeC
Q 001343 417 DG--NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEG 492 (1096)
Q Consensus 417 d~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~~~~ 492 (1096)
.. .+-++......-.+|++.....-..-..+.||...|+.+.|.|.... ++++++.|..+..|| . -..++..+..
T Consensus 78 h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~ 156 (1081)
T KOG0309|consen 78 HPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSS 156 (1081)
T ss_pred CCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeec
Confidence 53 34444444556678998755444433468899999999999998877 899999999999999 3 4456777766
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee-eEEeCCCCcEEEEEEcCC-CCEEEEEeeccCCCCeEEEEe
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDAPGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~-~~~l~~~~~~~~~~~~i~iwd 570 (1096)
-...-..+.|+.. ++ .+++.+..+.|++||.+.+... ..++.+...|+.+.|..- ...+.+++. +++|+.||
T Consensus 157 w~s~asqVkwnyk-~p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~----d~tvkfw~ 230 (1081)
T KOG0309|consen 157 WRSAASQVKWNYK-DP-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN----DGTVKFWD 230 (1081)
T ss_pred ccccCceeeeccc-Cc-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC----CCceeeec
Confidence 6667778888764 33 4556667788999999976654 466777778888888653 234555554 99999999
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE--EcCCeEEE---------EeCCC-CeEEEEeecCCCCCCccEEEEe
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV--GEDSQIKF---------WDMDN-VNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i---------wd~~~-~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
.......-......+.++..-++-|-|.-.+.- -.+..+.+ |+..+ .+.+..+.+|.. .|...-|-
T Consensus 231 y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR 308 (1081)
T KOG0309|consen 231 YSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWR 308 (1081)
T ss_pred ccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhh
Confidence 875433222222223355555666655433321 11223333 33332 356778877765 55555443
Q ss_pred CC----------CCEEEEEECCCcEEEEEcCCC
Q 001343 639 KE----------GNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~----------~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.. .-.|++-+.|..+++|-+.+.
T Consensus 309 ~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 309 KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 32 247999999999999998654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-06 Score=86.03 Aligned_cols=221 Identities=17% Similarity=0.183 Sum_probs=141.3
Q ss_pred eeeecCCCcEEEEecCCeEEEEEcccc--eEEEee---cCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeee
Q 001343 836 CIALSKNDSYVMSATGGKISLFNMMTF--KVMTTF---MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVW 910 (1096)
Q Consensus 836 ~l~~s~dg~~la~~~dg~v~iwd~~~~--~~~~~~---~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w 910 (1096)
.++.+.||++||...|..|.|-..++. ..+++. +.....=+.++||| |+.+||.+...|+|+++|+....+.
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-- 78 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-- 78 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE--
Confidence 367889999999999999998876542 222322 23334566899999 9999999999999999999876511
Q ss_pred eccccccccceeeecCCCCCCCCCceEEEecCC-------cEEEEEecceEEEEEcccc-----eeccccccCCCCCCCc
Q 001343 911 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ-------VRMLVVHETQLAIYDASKM-----ERIRQWTPQDALSAPI 978 (1096)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg-------~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~i 978 (1096)
.+.. .....+.....|..+.|-+-. .+|+...+|.++-|-+..+ +....+.-...+...|
T Consensus 79 ~I~p--------~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 79 VIPP--------AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred EcCc--------ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 1111 001111111356666665432 3445578888887776432 2222222211137889
Q ss_pred eEEEEeeCCcEEEEEec----C-------CcEEEEecCCCceeEEEcccc---------------ccCCCc----cCCCc
Q 001343 979 SCAVYSCNSQLVFATFC----D-------GNIGVFDADTLRLRCYIAPST---------------YLSPSV----LNGSQ 1028 (1096)
Q Consensus 979 ~~l~~s~dg~~la~~~~----d-------g~i~vwd~~~~~~~~~~~~~~---------------~~~~~~----~~h~~ 1028 (1096)
.++.|.|.-++|++|+. | .-+..|.+-++...+...... ..+... ..-..
T Consensus 151 ~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d 230 (282)
T PF15492_consen 151 NSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQD 230 (282)
T ss_pred eEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCC
Confidence 99999999998887762 1 136678876655332211000 000000 01245
Q ss_pred cccceEEEecCCCCceEEEEeeCCcEEEEccCCCC--CccccCC
Q 001343 1029 TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE--GKWGVSP 1070 (1096)
Q Consensus 1029 ~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~--~~~~~~~ 1070 (1096)
.|+ -|..|| ||..||+...+|.|.+|++.+=. ++|..+.
T Consensus 231 ~i~--kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 231 GIF--KMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred ceE--EEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 677 489999 99999999999999999998854 7787753
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-09 Score=117.28 Aligned_cols=217 Identities=15% Similarity=0.228 Sum_probs=162.5
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC-cEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKV 479 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~-~i~i 479 (1096)
.+..|+...+|++||-+.+.|++|+..|.|+++++.+|.... ...+|..+|+-+.=+.||.. .|.+++... -..+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHH
Confidence 478899999999999999999999999999999999998777 57799999999999999984 333333333 5789
Q ss_pred EE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC----CCcEEEEEEcCCCCEE
Q 001343 480 WE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRL 553 (1096)
Q Consensus 480 wd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~l 553 (1096)
|+ ..+...++|.+ -.++.|+.. .+.-+.|+.-....+||+++.....++-.. ...-+...|+|+.+.+
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99 56667766654 345666543 234445555567889999998776653211 1133678899999888
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
+- +|. +||.+..+.++.|..... ...-.|+|+|..++.-++ |||+++.+.++....... .
T Consensus 1246 ln-------dGv--LWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c 1305 (1516)
T KOG1832|consen 1246 LN-------DGV--LWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----C 1305 (1516)
T ss_pred ee-------Cce--eeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----e
Confidence 75 554 599998888888776543 223568999999998876 899999998887765543 5
Q ss_pred EEEEeCCCCEEEEE
Q 001343 634 RLRFSKEGNLLAVT 647 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~ 647 (1096)
.+.|+..|..++..
T Consensus 1306 ~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYAM 1319 (1516)
T ss_pred EEEeccCccchhhh
Confidence 78888888776543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-06 Score=82.46 Aligned_cols=231 Identities=12% Similarity=0.158 Sum_probs=136.7
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEccCC--CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEE
Q 001343 412 VAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN 489 (1096)
Q Consensus 412 l~~spd~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~ 489 (1096)
++.+.||+.||+- .|..|.|=..+.. ..+.+...-+...-.-+.++|+||+. +||.+...|+|+++|..|..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEecccceeEE
Confidence 5678899999876 4567766554432 11121111222233457899999999 89999999999999977777666
Q ss_pred eeCC-------CCCeEEEEeeecCC----CcEEEEEECCCeEEEEEcCCC-----CeeeEEeC---CCCcEEEEEEcCCC
Q 001343 490 FEGH-------EAPVYSICPHHKEN----IQFIFSTAIDGKIKAWLYDTM-----GSRVDYDA---PGHWCTTMLYSADG 550 (1096)
Q Consensus 490 ~~~~-------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~---~~~~i~~l~~s~~~ 550 (1096)
+..- ...|..+.|..... ...|++-..+|.++-|-+..+ +....+.. ....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 5432 24566666654321 235777888888888875321 22223332 35589999999999
Q ss_pred CEEEEEeeccCCCC-------eEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 551 SRLFSCGTSKDGDS-------FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~-------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
+.|+++|.....++ -+..|.+-++.+-.. .....+...-.... +..+|.+-+.......
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk-----------~v~~~~~~~~~~~~---~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK-----------QVTSSEDDITASSK---RRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEE-----------EccccCcccccccc---ccceeeccceeeeecc
Confidence 99998886433221 123333222211110 10111111111111 1233433332222111
Q ss_pred ecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
......|..|..||||..||+...+|.|.+|++.+-
T Consensus 226 --~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 226 --GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred --ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 112347999999999999999999999999999765
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.1e-08 Score=99.86 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=115.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE-
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~- 424 (1096)
.+..+.++|.++ ++|++..+....++++..... ..+.++... + ...-+++.|..+...+.++
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~---------v---~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVSC---------V---PKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEee---------c---ccCcceeeeeeccceEEEEe
Confidence 456677888888 799988888877777765433 122222110 1 1123344444444544444
Q ss_pred --ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe-eCCCCCeEEE
Q 001343 425 --FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAPVYSI 500 (1096)
Q Consensus 425 --~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~~~~~v~~~ 500 (1096)
+....+.+|+...+.+. .+-||-.-+++++|+||++ +|+++..|..|++-. ..-..+..| -||+..|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44456667766654433 3568999999999999999 999999999999988 555555554 5799999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 535 (1096)
+..+ +..|+++|.|+++++||+.+++.+..+.
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence 9854 3578999999999999999988775443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-06 Score=95.44 Aligned_cols=214 Identities=13% Similarity=-0.017 Sum_probs=128.7
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEE-EeC--CCeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV-GSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llas-g~~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
+|-+|.-.......+.. +.+..-.|||||+++++. ... +..|.++|+.+++... +.
T Consensus 171 l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt 229 (419)
T PRK04043 171 IVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IA 229 (419)
T ss_pred EEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------Ee
Confidence 77766533333323333 378899999999853443 322 3579999998887543 22
Q ss_pred cCCCCEEEEEEcCCCCEEEEEE-C--CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--cEE
Q 001343 404 DVPISVSRVAWSPDGNYVGVAF-T--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIK 478 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~-~--dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~i~ 478 (1096)
...+.+....|||||+.|+... . +..|.++|+.+++..+ +..+.+......|+|||+.++ ++....+ .|.
T Consensus 230 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~-F~Sdr~g~~~Iy 304 (419)
T PRK04043 230 SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIV-FVSDRLGYPNIF 304 (419)
T ss_pred cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEE-EEECCCCCceEE
Confidence 3445567788999999877543 2 3568888887765322 333443344568999999533 3332333 577
Q ss_pred EEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC---------CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC
Q 001343 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 548 (1096)
+.| ..|+. ..+...... ...|+| +|+.|+..+.. ..|.+.|++++.... +... .......|+|
T Consensus 305 ~~dl~~g~~-~rlt~~g~~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SP 377 (419)
T PRK04043 305 MKKLNSGSV-EQVVFHGKN--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSS 377 (419)
T ss_pred EEECCCCCe-EeCccCCCc--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECC
Confidence 777 44444 333211111 236765 66777666543 257777877665433 3222 2334688999
Q ss_pred CCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 549 DGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
||+.++..... .+...+.+.++...
T Consensus 378 DG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 378 DGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 99998877643 33455777777543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.001 Score=76.91 Aligned_cols=607 Identities=12% Similarity=0.081 Sum_probs=289.5
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecC-CCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
+..-..+++|.+ ...|..+|.+...-+. +++......+++. .-+..+-..|+..-++| .|.+|+
T Consensus 260 ~~~~~v~~~~~~-yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve-------------~lge~siassi~~L~ng-~lFvGS 324 (1096)
T KOG1897|consen 260 VCYGRVDLQGSR-YLLGDEDGMLFKLLLSHTGETVSGLDLKVE-------------YLGETSIASSINYLDNG-VLFVGS 324 (1096)
T ss_pred EEcccccCCccE-EEEecCCCcEEEEEeecccccccceEEEEE-------------ecCCcchhhhhhcccCc-eEEEec
Confidence 334455677775 5567788877766555 5554322111211 22344455566665555 677788
Q ss_pred CCCeEEEEEccCCCccc----cceeecccccCEEEEEEecCC---CcEEEEEEe---CCCcEEEEE--cCCceE--EEee
Q 001343 426 TKHLIQLYSYAGSNDLR----QHSQIDAHVGAVNDLAFAYPN---KLLCVVTCG---DDKLIKVWE--LSGRKL--FNFE 491 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~----~~~~l~~h~~~v~~l~~s~d~---~~~~l~s~s---~d~~i~iwd--~~~~~~--~~~~ 491 (1096)
.-|.=.+-.+.+-.... ...++ ..-++|.+++..... +. .++||+ .||++++.. ..=..+ ..+.
T Consensus 325 ~~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~ 402 (1096)
T KOG1897|consen 325 RFGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDLP 402 (1096)
T ss_pred cCCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeecC
Confidence 77665666555432221 00011 244688888876533 33 566665 589999986 222222 3344
Q ss_pred CCCCCeEEEE--eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEc-CCCCEEEEEeeccCCCCeEEE
Q 001343 492 GHEAPVYSIC--PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 492 ~~~~~v~~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l~~~~~~~~~~~~i~i 568 (1096)
| -..++.+. +.+..+. +|+.+-.+.+ ++..+...-......+-......+..| -.|+.++-.. ...|++
T Consensus 403 G-ikg~w~lk~~v~~~~d~-ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iRl 474 (1096)
T KOG1897|consen 403 G-IKGMWSLKSMVDENYDN-YLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIRL 474 (1096)
T ss_pred C-ccceeEeeccccccCCc-EEEEEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEEE
Confidence 4 33466666 5444443 5555444333 344443221111111111122222222 2333333222 446777
Q ss_pred EeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC------C
Q 001343 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG------N 642 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~ 642 (1096)
++-. ..+.......+ ++....+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|-| +
T Consensus 475 ~ss~--~~~~~W~~p~~--~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~ 549 (1096)
T KOG1897|consen 475 VSSA--GLRSEWRPPGK--ITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSR 549 (1096)
T ss_pred Ecch--hhhhcccCCCc--eEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcce
Confidence 6644 22333333332 3333344455577777777778777877665 3333333334478999999842 3
Q ss_pred EEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCcc
Q 001343 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1096)
++++|..+..+.+.-......... ......+.....+--..+-.
T Consensus 550 ~~aVG~Ws~~~~~l~~~pd~~~~~-~~~l~~~~iPRSIl~~~~e~----------------------------------- 593 (1096)
T KOG1897|consen 550 LLAVGLWSDISMILTFLPDLILIT-HEQLSGEIIPRSILLTTFEG----------------------------------- 593 (1096)
T ss_pred EEEEEeecceEEEEEECCCcceee-eeccCCCccchheeeEEeec-----------------------------------
Confidence 788887766555443222211111 11011111100111112222
Q ss_pred CCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEee---------c
Q 001343 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK---------W 793 (1096)
Q Consensus 723 s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~---------~ 793 (1096)
|..+|..+..||.+.-|.+... +++....+ .......++.--.|+..++.-+.+.+|.-..+|. +
T Consensus 594 --d~~yLlvalgdG~l~~fv~d~~--tg~lsd~K--k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spl 667 (1096)
T KOG1897|consen 594 --DIHYLLVALGDGALLYFVLDIN--TGQLSDRK--KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPL 667 (1096)
T ss_pred --cceEEEEEcCCceEEEEEEEcc--cceEcccc--ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEecc
Confidence 2334445555566555544421 01000000 0000122233333333222222222222222222 1
Q ss_pred cCCc------c----CCCCceeeec-CccccccCccccc-cccccCCCcCCCeeeeeecCCCcEEEEecC----------
Q 001343 794 HRNE------Q----NPSGKATASA-VPQHWLPSSGLLM-ANDVAGVNLEEAVPCIALSKNDSYVMSATG---------- 851 (1096)
Q Consensus 794 ~~~~------~----~~~g~~~~~~-~i~~w~~~~~~~~-~~~~~g~~~~~~v~~l~~s~dg~~la~~~d---------- 851 (1096)
...+ + -+++-..+.. .+++..+..-..+ ..+++ -......+++.+...++++.++
T Consensus 668 s~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp---l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ 744 (1096)
T KOG1897|consen 668 SLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP---LGESPRRICYQESSLTFGVLSNRIESSAEYYG 744 (1096)
T ss_pred chHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec---CCCChhheEecccceEEEEEecccccchhhcC
Confidence 1110 0 0111111111 1111111110000 00122 2345556677664444444331
Q ss_pred -----CeEEEEEcccceEEEeecCC-C---CCeeEEEEecCCCcEEEEee----------CCCeEEEEeeccceeeeeec
Q 001343 852 -----GKISLFNMMTFKVMTTFMSP-P---PASTFLAFHPQDNNIIAIGT----------EDSTIHIYNVRVDELCVWSI 912 (1096)
Q Consensus 852 -----g~v~iwd~~~~~~~~~~~~h-~---~~i~~l~~s~~d~~~l~s~~----------~dg~i~iw~~~~~~~~~w~~ 912 (1096)
..++++|-++.+.+...+-. . -.+.++.|..|.+.++++|+ ..|.|.++.+....
T Consensus 745 ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~------ 818 (1096)
T KOG1897|consen 745 EEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN------ 818 (1096)
T ss_pred CcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC------
Confidence 12778887777665443211 1 23555668883377888875 35777777776632
Q ss_pred cccccccceeeecCCCCCC-CCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEE
Q 001343 913 DTWEKRKSVTIHIPAGKTP-TGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 991 (1096)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~-~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 991 (1096)
.++....+.. +.+. ++-.-...++++-...|++|+..+.+.++.-..+ ..++..+...-.|..++
T Consensus 819 ---------~L~~v~e~~v~Gav~--aL~~fngkllA~In~~vrLye~t~~~eLr~e~~~---~~~~~aL~l~v~gdeI~ 884 (1096)
T KOG1897|consen 819 ---------SLELVAETVVKGAVY--ALVEFNGKLLAGINQSVRLYEWTTERELRIECNI---SNPIIALDLQVKGDEIA 884 (1096)
T ss_pred ---------ceeeeeeeeecccee--ehhhhCCeEEEecCcEEEEEEccccceehhhhcc---cCCeEEEEEEecCcEEE
Confidence 1122111111 1222 2222233444456678999999988766665554 77889999999999999
Q ss_pred EEecCCcEEEEecCCCc--eeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 992 ATFCDGNIGVFDADTLR--LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 992 ~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
+|..=+++.+......+ +...-+ .- |..+++ ++.+- +++.++-+..+|.+++-...+
T Consensus 885 VgDlm~Sitll~y~~~eg~f~evAr-D~--------~p~Wmt--aveil--~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 885 VGDLMRSITLLQYKGDEGNFEEVAR-DY--------NPNWMT--AVEIL--DDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred EeeccceEEEEEEeccCCceEEeeh-hh--------Ccccee--eEEEe--cCceEEeecccccEEEEEecC
Confidence 99988887775554444 443322 11 455677 36665 466677778888888877553
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-07 Score=91.15 Aligned_cols=247 Identities=15% Similarity=0.231 Sum_probs=162.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCC--ccccceeecccc------------cCEEEEEEecCCCcEEEEE
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVT 470 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~l~~h~------------~~v~~l~~s~d~~~~~l~s 470 (1096)
....|+++.|...|.||++|...|.|.+|.-+... ..+-+.++++|. ..|..+.|..++....++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34579999999999999999988999999765432 122222455554 4678888887766556777
Q ss_pred EeCCCcEEEEE-cCC-------------------ceE-----------------------EEe-eCCCCCeEEEEeeecC
Q 001343 471 CGDDKLIKVWE-LSG-------------------RKL-----------------------FNF-EGHEAPVYSICPHHKE 506 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~~-------------------~~~-----------------------~~~-~~~~~~v~~~~~~~~~ 506 (1096)
.+.|++|++|. ... .++ +.+ ..|.-.|.+++++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-- 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-- 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence 88899999998 222 000 000 34555677777754
Q ss_pred CCcEEEEEECCCeEEEEEcCCCCeee---EEeCCCC-----cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee-
Q 001343 507 NIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGH-----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK- 577 (1096)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~-----~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~- 577 (1096)
|.+.+++ +.|=.|.+|+++.....+ ....++. .|++..|+|....++.-+. ..|.|++-|++...+-
T Consensus 183 D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 4455555 457889999987655433 2233332 5788899997655443332 1889999998732110
Q ss_pred ---E----E--------EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecCCC----------CCC
Q 001343 578 ---R----T--------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGG----------LPN 631 (1096)
Q Consensus 578 ---~----~--------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~ 631 (1096)
+ + +.+.. ..|..+.|+++|+++++-.. -++++||.+. ..++.++..|.. ...
T Consensus 259 n~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred CchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 1 1 11111 25677899999999888765 5899999986 456666644321 112
Q ss_pred c---cEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 632 L---PRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 632 v---~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
| ..+.|+.|...+.+|+..+...+|-..
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeeEEEEecCCcccccccccccceeeeccc
Confidence 2 357888888999999988888887643
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-05 Score=82.85 Aligned_cols=251 Identities=13% Similarity=0.107 Sum_probs=148.2
Q ss_pred EEEEEeCC-CCEEEEEEcCC-eEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC-----CCcEEEEEcCCC
Q 001343 589 GVVQFDTT-QNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-----DNGFKILANAIG 661 (1096)
Q Consensus 589 ~~~~~~~~-~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~ 661 (1096)
..++.+|. ...++.+-.-| ...+||..+++....+.......---.-.|++||++|++.-. .|.|-+||...+
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 34677884 44555565555 478999999999887765544223335689999999998754 478999999866
Q ss_pred ccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCC--CCccccCCCCCcc
Q 001343 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD--KPRTVDDVTDKPK 739 (1096)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~--~~l~s~~~dg~i~ 739 (1096)
.+.+..+..+-...+ .+.+.|||+.||..+..-.+ .||. ..|-....+-.+.
T Consensus 88 ~~ri~E~~s~GIGPH-----el~l~pDG~tLvVANGGI~T---------------------hpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPH-----ELLLMPDGETLVVANGGIET---------------------HPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred cEEEeEecCCCcChh-----hEEEcCCCCEEEEEcCCCcc---------------------CcccCceecChhhcCCceE
Confidence 677777766655434 48899999776544332111 1111 1111122223333
Q ss_pred ceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCe-------EEEeeccCCccCCCCceeeecCccc
Q 001343 740 PWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGV-------QKLWKWHRNEQNPSGKATASAVPQH 812 (1096)
Q Consensus 740 iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~-------v~vw~~~~~~~~~~g~~~~~~~i~~ 812 (1096)
..|..+ .....+..++. ..|...|+.+++.++|..++..-..|. +-+++... .++.
T Consensus 142 ~ld~~s---G~ll~q~~Lp~-~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-------------~~~~ 204 (305)
T PF07433_consen 142 YLDARS---GALLEQVELPP-DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-------------ALRL 204 (305)
T ss_pred EEecCC---CceeeeeecCc-cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-------------ccee
Confidence 332221 12223334422 237788999999999973333322221 11111000 0111
Q ss_pred cccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEE
Q 001343 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1096)
Q Consensus 813 w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s 890 (1096)
.+...... .. -...+-+|+++++|.++++.+ .|.+.+||..+++.+.... -..+..++-.+ ++ ++++
T Consensus 205 ~~~p~~~~-----~~--l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~-~~-f~~s 273 (305)
T PF07433_consen 205 LPAPEEQW-----RR--LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTD-DG-FLVS 273 (305)
T ss_pred ccCChHHH-----Hh--hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecC-Cc-eEEe
Confidence 11111110 01 346788999999999998887 4889999999999988763 33566777776 55 5555
Q ss_pred eeC
Q 001343 891 GTE 893 (1096)
Q Consensus 891 ~~~ 893 (1096)
.+.
T Consensus 274 sG~ 276 (305)
T PF07433_consen 274 SGQ 276 (305)
T ss_pred CCC
Confidence 544
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-06 Score=82.80 Aligned_cols=227 Identities=12% Similarity=0.013 Sum_probs=145.9
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~ 437 (1096)
+||.|+..|...+|...+.+.... + ...|...|+-+.=..| ..-+..++.|.++++.+++.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~----~--------------cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLY----Q--------------CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred EEEeccccceeeeecccCccccee----e--------------ecccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence 689999999999999987654321 1 2223333322211112 23466788999999999887
Q ss_pred CCccccceeeccccc--CEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEE-e-eCCCCCeEEEEeeecCCCcEE
Q 001343 438 SNDLRQHSQIDAHVG--AVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFN-F-EGHEAPVYSICPHHKENIQFI 511 (1096)
Q Consensus 438 ~~~~~~~~~l~~h~~--~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~l 511 (1096)
+..-. ..|.. .+.++.+++|++ ++++.+....|..|. .+++.+.. . ...+..-.+..|+. +...+
T Consensus 148 ~s~~~-----~~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~--~~~~F 218 (344)
T KOG4532|consen 148 DSNKF-----AVHNQNLTQNSLHYSNDPS--WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE--NDLQF 218 (344)
T ss_pred Ccccc-----eeeccccceeeeEEcCCCc--eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc--CcceE
Confidence 54322 22443 388999999999 899999899999998 44443333 2 22233344556643 55789
Q ss_pred EEEECCCeEEEEEcCCCCeee-----EEeCCCCcEEEEEEcCCCCE-EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc
Q 001343 512 FSTAIDGKIKAWLYDTMGSRV-----DYDAPGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585 (1096)
Q Consensus 512 ~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~i~~l~~s~~~~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 585 (1096)
+++..||++.|||++...... ....|++.+..+.|++.|.. |+..+. +-+.+.+.|+++++-.+.+.-..+
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCcc
Confidence 999999999999998765543 33457779999999986642 222222 367899999999876655543222
Q ss_pred -------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 586 -------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 586 -------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
..+....|+.++..+.+.+++ .+.=|++.+
T Consensus 296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 235555666666666555543 344555544
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.8e-07 Score=91.40 Aligned_cols=258 Identities=14% Similarity=0.118 Sum_probs=175.6
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
.-|.+.|+.|.-+-. + ++.+++.||.++.|.-..-.-+. +. .-+..|-+.|.+++.+-+|..
T Consensus 6 ymhrd~i~hv~~tka-~-fiiqASlDGh~KFWkKs~isGvE---------------fV-KhFraHL~~I~sl~~S~dg~L 67 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKA-K-FIIQASLDGHKKFWKKSRISGVE---------------FV-KHFRAHLGVILSLAVSYDGWL 67 (558)
T ss_pred hcccceeeeEeeehh-h-eEEeeecchhhhhcCCCCcccee---------------eh-hhhHHHHHHHHhhhcccccee
Confidence 347778887776654 3 79999999999999854311111 00 115668889999999999999
Q ss_pred EEEEEC-CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCC-ceEEEeeCCCCC
Q 001343 421 VGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSG-RKLFNFEGHEAP 496 (1096)
Q Consensus 421 l~s~~~-dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~-~~~~~~~~~~~~ 496 (1096)
+++++. |..++++|+++-..+.-+ .+.--.+.+.++.-..|...++-++.-.++.+.++| .++ +....-+-|..+
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP 146 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP 146 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhc-ccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc
Confidence 999877 999999999876544321 122233333332211122211344455678999999 333 333444569999
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CC-----eeeEE---------eCCCCcEEEEEEcCCCCEEEEEeeccC
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MG-----SRVDY---------DAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~-----~~~~~---------~~~~~~i~~l~~s~~~~~l~~~~~~~~ 561 (1096)
|..+.+.+.. +.+++....|.|..|.... .+ ....+ .-......++.|+|+|..+.+.+.
T Consensus 147 V~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~--- 221 (558)
T KOG0882|consen 147 VKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP--- 221 (558)
T ss_pred eEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc---
Confidence 9999998754 5788999999999998762 11 11111 112236789999999999998876
Q ss_pred CCCeEEEEeCCCCeeeEEEcC--------------------------------cCccceEEEEEeCCCCEEEEEEcCCeE
Q 001343 562 GDSFLVEWNESEGTIKRTYAG--------------------------------FRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~--------------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i 609 (1096)
+..|++++.++|+.++.+.. +.......+.|...+++|+.++-= .|
T Consensus 222 -DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gi 299 (558)
T KOG0882|consen 222 -DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GI 299 (558)
T ss_pred -ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eE
Confidence 99999999999887665532 111122346788889999888764 38
Q ss_pred EEEeCCCCeEEEEee
Q 001343 610 KFWDMDNVNILTSTD 624 (1096)
Q Consensus 610 ~iwd~~~~~~~~~~~ 624 (1096)
++.++.++...+.+.
T Consensus 300 kvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 300 KVINLDTNTVVRILG 314 (558)
T ss_pred EEEEeecCeEEEEec
Confidence 899999888777654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.5e-06 Score=93.63 Aligned_cols=205 Identities=13% Similarity=0.040 Sum_probs=126.2
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC--CCcEEEEE-cCCceEEEeeCCCCCeEEEEeee
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~--d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~ 504 (1096)
..|.+-|.+... .+ .+... +.+....|+|||+.+.+++... +..|+++| .+|+. ..+....+......|+|
T Consensus 169 ~~l~~~d~dg~~-~~---~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QK---VIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIASSQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-ee---EEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EEEecCCCcEEeeEECC
Confidence 456666665443 22 12223 3778999999998422222222 45688889 55544 33433455566677866
Q ss_pred cCCCcEEE-EEECC--CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 505 KENIQFIF-STAID--GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 505 ~~~~~~l~-s~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
||..++ +.+.+ ..|.++|+..+... .+...........|+|||+.|+..+. ..+...|+++|+.+++..+...
T Consensus 243 --DG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 243 --DGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred --CCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCcc
Confidence 555554 44444 45666677665533 33333333445689999999988763 3345589999998887754433
Q ss_pred CcCccceEEEEEeCCCCEEEEEEcC---------CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.. . . ...|+|+|+.++..+.. ..|++.|+.++.... +.... ......|+|||+.++..+.+
T Consensus 319 ~g-~-~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~---~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 319 HG-K-N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANG---VNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred CC-C-c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCC---CcCCeEECCCCCEEEEEEcc
Confidence 21 1 1 24899999998876643 368888988876543 33222 23468999999988777653
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-07 Score=93.27 Aligned_cols=170 Identities=13% Similarity=0.163 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHhhCCC--------ccHHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHH
Q 001343 6 RELVFLILQFLEEEKFKESVHKLEKESGFF--------FNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIR 77 (1096)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~ 77 (1096)
.-+.|+|+.|+..+||.++|..|-++|.+. .++..+++++++|+...|+.-...=...-. .....+-|.+.
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~lR 194 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQLR 194 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHHH
Confidence 446899999999999999999999999976 236789999999999988887643100000 11223899999
Q ss_pred HHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCCchHHHHHHHH--HHHhhcccCc
Q 001343 78 KQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLI--ELKKLIEANP 155 (1096)
Q Consensus 78 ~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~--~l~~~i~~~~ 155 (1096)
.|.|+|||+.+++.+|+.|.+++|+|....+.++++....++.++...+...+.. .....|=..+. .++.+..--.
T Consensus 195 lQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sky~~--l~~~~rw~~l~~lF~s~a~~l~~ 272 (389)
T KOG0396|consen 195 LQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSKYLN--LLTADRWSVLADLFLSEALKLFG 272 (389)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcccccC--cccHHHHHHHHHHhhHHHHHHhC
Confidence 9999999999999999999999999998888899999999998765443222211 12233323333 3333333211
Q ss_pred cccccccCCCCCc-hHHHHHHHHHHHHHH-hcCCC
Q 001343 156 LFRDKLAFPTLKS-SRLRTLINQSLNWQH-QLCKN 188 (1096)
Q Consensus 156 ~~~~~~~~~~~p~-~rL~~Ll~qa~~~q~-~~~~~ 188 (1096)
+|. .+|..+|+-.+..|+ -.|.+
T Consensus 273 ----------i~~~~~L~~~l~~GLsalKTp~c~~ 297 (389)
T KOG0396|consen 273 ----------IPINPALTIYLQAGLSALKTPRCLN 297 (389)
T ss_pred ----------CCCCcHHHHHHHhhhhhcccccccc
Confidence 222 257777777777663 34544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-05 Score=81.01 Aligned_cols=233 Identities=14% Similarity=0.141 Sum_probs=152.1
Q ss_pred eEEEEEcCCCCcEEEEEeCCC-eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 347 VISMDFHPSHQTLLLVGSSNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.-.++.+|+....+|.+-.-| ...+||..+++...... .-..+.|.|| -.||+||++|++.=
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTE 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTE 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEec
Confidence 356888896555777777766 67899999998775311 1122336666 57999999999863
Q ss_pred -----CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe----------------CCCcEEEEE-cC
Q 001343 426 -----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG----------------DDKLIKVWE-LS 483 (1096)
Q Consensus 426 -----~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s----------------~d~~i~iwd-~~ 483 (1096)
..|.|-|||... .++.+.++..|.-.-..+.+.|||+.+.++-|+ .+-++.+-| .+
T Consensus 70 nd~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred cccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 348899999983 244444777888888899999999843333332 223456667 78
Q ss_pred CceEEE--e--eCCCCCeEEEEeeecCCCcEEEEEECCCe-------EEEEEcCCCCeeeEEeC-------CCCcEEEEE
Q 001343 484 GRKLFN--F--EGHEAPVYSICPHHKENIQFIFSTAIDGK-------IKAWLYDTMGSRVDYDA-------PGHWCTTML 545 (1096)
Q Consensus 484 ~~~~~~--~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~-------~~~~i~~l~ 545 (1096)
|+.+.. + .-|...|..+++.. +|..++..-..|. +-+++ .++....+.. -.+.+-+++
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred CceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEE
Confidence 887766 3 33777888888865 4444444333322 23332 2222222222 234799999
Q ss_pred EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEE
Q 001343 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 610 (1096)
+++++..+++.+. ..+.+.+||..+++.+....-. .++.++..+++ ++++ +..|.+.
T Consensus 224 ~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~s-sG~G~~~ 280 (305)
T PF07433_consen 224 ADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVS-SGQGQLI 280 (305)
T ss_pred EeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEe-CCCccEE
Confidence 9999998887664 3789999999999998876654 34556655555 4444 4445543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.1e-05 Score=85.21 Aligned_cols=187 Identities=12% Similarity=0.096 Sum_probs=112.1
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCC--CeE-----EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA--PVY-----SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 538 (1096)
.++.++.++.+.-+| .+|+.+........ ... .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 566777788888889 78888766542210 000 0000011123567888899999999999999888776544
Q ss_pred CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccc----eEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 539 ~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
....+..+. + ..++++.. ++.++.+|.++|+.+-.+....... ...-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~-~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-C-CEEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 3 34555543 7899999999999887776432100 001111 1346777888999999999
Q ss_pred CCCeEEEEeecCCCC--CC---ccEEEEeC--CCCEEEEEECCCcEEEEEcCCC
Q 001343 615 DNVNILTSTDAEGGL--PN---LPRLRFSK--EGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 615 ~~~~~~~~~~~~~~~--~~---v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+|+.+......... .. ...+..+| .+..+++++.+|.+..+|..++
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 999877655422110 00 11111222 3456666777888888887766
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.2e-07 Score=93.28 Aligned_cols=156 Identities=13% Similarity=0.143 Sum_probs=108.7
Q ss_pred CeeeeeecCCCcEEEEecC-CeEEEEEcccc----eEEEeecCCCCCeeEEEEecCCCcEEEEe---eCCCeEEEEeecc
Q 001343 833 AVPCIALSKNDSYVMSATG-GKISLFNMMTF----KVMTTFMSPPPASTFLAFHPQDNNIIAIG---TEDSTIHIYNVRV 904 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~d-g~v~iwd~~~~----~~~~~~~~h~~~i~~l~~s~~d~~~l~s~---~~dg~i~iw~~~~ 904 (1096)
....+..++.+++||++.. ....++++... +++..... ...-+++.|.. +.....++ ++...+.+|+...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeee-ccceEEEEeecCCceeeeeecccc
Confidence 3445677889999999984 44556655332 22322221 22233444444 33334333 4445556665554
Q ss_pred ceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEE
Q 001343 905 DELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVY 983 (1096)
Q Consensus 905 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~ 983 (1096)
+. ....-||-. .+.+|+||||++++++ ..|..|+|-.+...-.+..+.-+| ...|..++.
T Consensus 142 ~~----------------~~~~lGhvS-ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH--~eFVS~isl 202 (390)
T KOG3914|consen 142 GR----------------CEPILGHVS-MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGH--KEFVSTISL 202 (390)
T ss_pred cC----------------cchhhhhhh-hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcccc--Hhheeeeee
Confidence 33 345567776 9999999999999999 689999999998888888888776 999999998
Q ss_pred eeCCcEEEEEecCCcEEEEecCCCcee
Q 001343 984 SCNSQLVFATFCDGNIGVFDADTLRLR 1010 (1096)
Q Consensus 984 s~dg~~la~~~~dg~i~vwd~~~~~~~ 1010 (1096)
-+ +..|++++.|+++++||+.+|+.+
T Consensus 203 ~~-~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 203 TD-NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred cc-CceeeecCCCCcEEEEecccCCcc
Confidence 65 455899999999999999999854
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.1e-06 Score=79.04 Aligned_cols=208 Identities=5% Similarity=-0.070 Sum_probs=136.0
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
+|......+.....-.|...|+-+.=.-+.+.=+..++.|.++++.++..+.... .-|.
T Consensus 98 ~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---------------------~~h~ 156 (344)
T KOG4532|consen 98 LFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---------------------AVHN 156 (344)
T ss_pred eecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---------------------eeec
Confidence 6665554444444444555544433333322224456788888888887554321 1132
Q ss_pred C--CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 407 I--SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 407 ~--~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
. .+.++++|+|++++++.+....|..|.++...............+.-.+..|+.... .+|++..||++.||| ..
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecc
Confidence 2 388999999999999999999999999876443222112334455667889998887 899999999999999 43
Q ss_pred -CceEE----EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC--------cEEEEEEcCCC
Q 001343 484 -GRKLF----NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--------WCTTMLYSADG 550 (1096)
Q Consensus 484 -~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~i~~l~~s~~~ 550 (1096)
+.+.. +-..|.+.+..+.|++.+--.+|+..-.-+.+++.|+++............ .|..-.|+.++
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 33322 224588999999998765556777766678899999998776554332222 25566666666
Q ss_pred CEEEEEe
Q 001343 551 SRLFSCG 557 (1096)
Q Consensus 551 ~~l~~~~ 557 (1096)
..+.+..
T Consensus 315 ~s~~v~~ 321 (344)
T KOG4532|consen 315 ESNDVKN 321 (344)
T ss_pred ccccccc
Confidence 5555443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.6e-05 Score=78.74 Aligned_cols=218 Identities=16% Similarity=0.145 Sum_probs=138.9
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEe-cCCCcEEEEEEeCCCcEEEEE-cCCceE
Q 001343 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA-YPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 411 ~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s-~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 487 (1096)
++.|.+ ++.++++-...+.|..|+..++.... +. .. ....+++. +++. |+.+..++ +.++| .+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~-~~-~~~G~~~~~~~g~---l~v~~~~~-~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----ID-LP-GPNGMAFDRPDGR---LYVADSGG-IAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EE-SS-SEEEEEEECTTSE---EEEEETTC-EEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----Ee-cC-CCceEEEEccCCE---EEEEEcCc-eEEEecCCCcEE
Confidence 578888 66677776678999999998865322 11 11 27788888 6654 55555444 45559 666543
Q ss_pred EEeeC-----CCCCeEEEEeeecCCCcEEEEEECC--------CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 488 FNFEG-----HEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 488 ~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
..... .....+.+++.+ +|.+.++.... |.|..++.. .........-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 33322 234567788865 66766665543 456666655 33333333344678999999999887
Q ss_pred EEeeccCCCCeEEEEeCCCCe--e--eEEEc-CcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC
Q 001343 555 SCGTSKDGDSFLVEWNESEGT--I--KRTYA-GFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~--~--~~~~~-~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1096)
.+.. ..+.|..+++.... . .+.+. .... .....+++..+|+..++....+.|.+++.+ |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 37788888885321 1 22221 1111 136679999999988888889999999987 888888887744
Q ss_pred CCCccEEEEe-CCCCEEEEEE
Q 001343 629 LPNLPRLRFS-KEGNLLAVTT 648 (1096)
Q Consensus 629 ~~~v~~~~~s-~~~~~l~~~~ 648 (1096)
.+++++|. ++.+.|++.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 78999994 5666665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-07 Score=88.03 Aligned_cols=134 Identities=22% Similarity=0.220 Sum_probs=98.8
Q ss_pred HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001343 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQ 117 (1096)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1096)
+..++++|++|+++.|++.+......-....+ .+.|.|+.|+|+|||..++..+|+.+.|+++.|......+.++.+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56799999999999999999876322212212 38999999999999999999999999999997775445677888888
Q ss_pred HhcccCccc--hhhhcccCCchHHHHHHHHHHHhhcccCccccccccCCCCC-chHHHHHHHHHHHHH
Q 001343 118 LLTLSNFRE--NEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLK-SSRLRTLINQSLNWQ 182 (1096)
Q Consensus 118 ~~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~q 182 (1096)
++....... ...+..+- ....|+++++.+.+.+-...- +| .+.|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 887766554 22333222 337789999999887654221 33 457999988876654
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=84.58 Aligned_cols=208 Identities=13% Similarity=0.190 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~ 426 (1096)
|+.+.|+-+- .|+++..++.+......++.+... |+-..... +.+.+..|+.+=.+-+.+-.++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence 6677777664 588888888888777666554421 11111111 11123344444444444445788999999
Q ss_pred CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-----CCCcEEEEE-cC-CceEEEeeCCCCCeEE
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-LS-GRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-----~d~~i~iwd-~~-~~~~~~~~~~~~~v~~ 499 (1096)
||.+.+++.+. .++....+..-...-.+.++...++ .+.++. .-+..+.|+ .. +..+...+ -...|.+
T Consensus 110 dg~~~v~s~~~--~~~~~~~i~~~~~~~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDK--DLALMSRIPSIHSGSASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTA 184 (319)
T ss_pred CceEEEEechH--HHhhhhhcccccccccccceeeccc--EEecCCcceEeeccceeeeccccccccccccc-ccccchh
Confidence 99999999775 2221111111111112223333444 333322 112344454 11 11111112 2233889
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
++-+|... +.+++|+.||.+-+||++...... .+..|..++..+.|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99888754 688999999999999999774443 4567888999999998 5678888887 99999999765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.5e-06 Score=93.03 Aligned_cols=506 Identities=12% Similarity=0.072 Sum_probs=248.2
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1096)
+-..|+|...++++++.+....|.+.||- .+|++.+.....- .+.+++|+|..-.++.|=+-|.+.+|...+.+.-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~--hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV--HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce--ehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 34578999999999988888888998883 5666544332211 34569999988778888889999999988776666
Q ss_pred EeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccc-cccccCCCcccccCcc--eeEEeecCCCeEE----e
Q 001343 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS-LRAVENPPFEALRTPI--ESVALKVSASSAV----S 694 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v--~~~~~s~~g~~lv----~ 694 (1096)
....|.. +|..+.||++|..++++..-|.+.+|....-.+. ...+-.|. ....+ .+..+++++..++ +
T Consensus 96 v~~th~a--~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~he---l~~~ltl~cfRL~~~~Ee~~~laKa 170 (1416)
T KOG3617|consen 96 VVETHPA--PIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHE---LNDQLTLWCFRLSYDREEKFKLAKA 170 (1416)
T ss_pred eccCCCC--CceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhH---hhceeeEEEEecCCChHHhhhhhhh
Confidence 5555544 8999999999999999999999999987532111 01111111 01112 2233444432220 1
Q ss_pred cCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEec
Q 001343 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1096)
Q Consensus 695 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1096)
..+++-.-++....+++...-......-.++|..+..+..+|+|.-.|-. +.+..+.--+ +. ..+-|.+
T Consensus 171 aVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-----g~~~~V~k~d-----S~-vQmLf~~ 239 (1416)
T KOG3617|consen 171 AVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN-----GRQRTVHKLD-----SE-VQMLFMG 239 (1416)
T ss_pred hccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC-----CcEEEEEEcc-----ch-HHHHHhc
Confidence 11111111111111111111111222346777777777777887666643 3333322111 11 1223333
Q ss_pred CCceEEEeecCCeEEEeeccCCccC-------CCCceee-ecCccccccCccccccccccCCCcCCCeeeeeecCCCcEE
Q 001343 775 SAVGLLALGSNGVQKLWKWHRNEQN-------PSGKATA-SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1096)
Q Consensus 775 ~~~~l~~~~~dg~v~vw~~~~~~~~-------~~g~~~~-~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~l 846 (1096)
-...++....+-.+.++-+...... ..|+.-. .+.+..- -..|...+..--|......+.|+|++.-+..|
T Consensus 240 ~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~s-EssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l 318 (1416)
T KOG3617|consen 240 YCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACS-ESSGVLRKSEKYGLELGEGILCMCYGEKEIRL 318 (1416)
T ss_pred ccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccc-cccccccCCcchhhhcCCceEEEEEeccceEE
Confidence 3333333333333333333221100 0000000 0000000 01121111111122246789999999999999
Q ss_pred EEec-CCeEEEEEc-ccc------eEEEeec---CCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccce----eeeee
Q 001343 847 MSAT-GGKISLFNM-MTF------KVMTTFM---SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE----LCVWS 911 (1096)
Q Consensus 847 a~~~-dg~v~iwd~-~~~------~~~~~~~---~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~----~~~w~ 911 (1096)
+.|. .|.+.+|-- .+| .-..++. .-.+.|+.+.|.| -...+++.+....+.+=. ..-. .-.|.
T Consensus 319 ~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~-~k~~~avn~~~~v~ll~E-~~l~~~h~~~~~A 396 (1416)
T KOG3617|consen 319 WAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP-IKSTAAVNTEEDVVLLGE-NSLTVKHRGKMAA 396 (1416)
T ss_pred EecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecc-ccchhhhhhhhheeeecc-CchHHHHhhhhHH
Confidence 9888 599999963 221 1222232 3346899999999 666666655544333211 1000 00111
Q ss_pred ccccccccce-eeecCCCCCC-----CCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEee
Q 001343 912 IDTWEKRKSV-TIHIPAGKTP-----TGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 985 (1096)
Q Consensus 912 ~~~~~~~~~~-~~~~~~~~~~-----~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~ 985 (1096)
++.-. .+- ...-..|... -.+..++.+ ...|++.+.++|..|++++.-.+....... +.....+++..
T Consensus 397 ~q~ss--~S~~L~hc~sGv~~~l~~~~~~~gi~l~--e~~lvvwNgr~v~~y~lq~SG~la~~~~~t-F~cet~~la~~- 470 (1416)
T KOG3617|consen 397 IQTSS--NSFTLLHCTSGVSQDLKLSIPSAGICLG--EKQLVVWNGRTVVTYDLQTSGSLATIQCTT-FSCETTSLAIV- 470 (1416)
T ss_pred hhhcC--CceEEEeeccchhhhhhhccchhhheec--cceEEEEcCceEEEEEecccchhHHHhhhh-hccccchHhHh-
Confidence 10000 000 0011111111 022223322 345666778889999996332111111110 01122223322
Q ss_pred CCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCCCc
Q 001343 986 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGK 1065 (1096)
Q Consensus 986 dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~~~ 1065 (1096)
+.++...++.+ |.++.+. |.++..+..+. ..++. .+-.-.|.+++++...+.++-+|+...+.+
T Consensus 471 nqN~ycies~~--Vfvrt~q-Gtv~q~i~~se---------iEg~~----~~ldi~g~~l~v~t~~~~~k~~dvsr~e~k 534 (1416)
T KOG3617|consen 471 NQNLYCIESDK--VFVRTLQ-GTVRQEISLSE---------IEGVV----VLLDIMGELLIVQTVSTVAKRLDVSRAELK 534 (1416)
T ss_pred hcceEEeccCc--EEEEecc-hhhhhhccchh---------ccCce----ehhhhccceeEEeehHHHHHHhhhhhhccc
Confidence 22233333333 4444433 33333332111 11221 221115899999998888888888887732
Q ss_pred cccCCCC---------------CCCCCCCCCCCCCCCCCCC
Q 001343 1066 WGVSPPV---------------DNGILNSRTTSSSTSNHTP 1091 (1096)
Q Consensus 1066 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 1091 (1096)
--.+-.. =+.+++.+|-.+|.+..++
T Consensus 535 a~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~p 575 (1416)
T KOG3617|consen 535 AVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAP 575 (1416)
T ss_pred ccccccccccccCCcCceEEEeeccCCCCcccchhhccCCC
Confidence 2211111 1555677777777777666
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.6e-05 Score=86.22 Aligned_cols=258 Identities=8% Similarity=0.067 Sum_probs=154.9
Q ss_pred EEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEE-EEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 360 lasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
++.++.+|.+.-+|..+|+.+-+.+. . +.+.+ ... .+..++++..++.+.-+|.++|
T Consensus 123 v~v~~~~g~l~ald~~tG~~~W~~~~-----------------~---~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG 180 (394)
T PRK11138 123 VYIGSEKGQVYALNAEDGEVAWQTKV-----------------A---GEALSRPVV--SDGLVLVHTSNGMLQALNESDG 180 (394)
T ss_pred EEEEcCCCEEEEEECCCCCCcccccC-----------------C---CceecCCEE--ECCEEEEECCCCEEEEEEccCC
Confidence 55677899999999999997643111 1 11111 011 2446667778899999999999
Q ss_pred Cccccceeeccccc---CEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC-------CeEEEEeeecCC
Q 001343 439 NDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA-------PVYSICPHHKEN 507 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~---~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~-------~v~~~~~~~~~~ 507 (1096)
+.+-... ...... ....-... +. .++.++.++.+...| .+|+.+........ ....+...|.-.
T Consensus 181 ~~~W~~~-~~~~~~~~~~~~sP~v~--~~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 181 AVKWTVN-LDVPSLTLRGESAPATA--FG--GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred CEeeeec-CCCCcccccCCCCCEEE--CC--EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 8664321 110000 00011111 22 456677789999999 88887655431110 011111111112
Q ss_pred CcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccc
Q 001343 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587 (1096)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 587 (1096)
+..++.++.+|.+..+|..+++......... ...+. ..+..++.++. ++.++.+|..+|+.+-.........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~--~~~~~vy~~~~----~g~l~ald~~tG~~~W~~~~~~~~~ 327 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFA--VDGGRIYLVDQ----NDRVYALDTRGGVELWSQSDLLHRL 327 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcE--EECCEEEEEcC----CCeEEEEECCCCcEEEcccccCCCc
Confidence 3467778889999999999888776554321 11222 24556666654 8899999999998765443211111
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc-EEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 588 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
...... .+..++.++.+|.+++.|..+|+.+........ .+. ...+ .+..|++++.||.+..++.
T Consensus 328 ~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~--~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 328 LTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS--GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC--cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 221222 256788999999999999999999887765322 222 1122 3457888999999888764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00013 Score=76.51 Aligned_cols=219 Identities=16% Similarity=0.144 Sum_probs=142.4
Q ss_pred EEEEcC-CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc-CCCCEEEEEEC
Q 001343 349 SMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-PDGNYVGVAFT 426 (1096)
Q Consensus 349 ~v~fsp-~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pd~~~l~s~~~ 426 (1096)
+.+|.+ +|. |+++--..+.|..|+..+++... +. .. ....+++. +++++ +++..
T Consensus 4 gp~~d~~~g~-l~~~D~~~~~i~~~~~~~~~~~~--------------------~~-~~-~~~G~~~~~~~g~l-~v~~~ 59 (246)
T PF08450_consen 4 GPVWDPRDGR-LYWVDIPGGRIYRVDPDTGEVEV--------------------ID-LP-GPNGMAFDRPDGRL-YVADS 59 (246)
T ss_dssp EEEEETTTTE-EEEEETTTTEEEEEETTTTEEEE--------------------EE-SS-SEEEEEEECTTSEE-EEEET
T ss_pred ceEEECCCCE-EEEEEcCCCEEEEEECCCCeEEE--------------------Ee-cC-CCceEEEEccCCEE-EEEEc
Confidence 577888 555 78887788999999998876542 11 11 27777887 56544 44555
Q ss_pred CCeEEEEEccCCCccccceeec--c-cccCEEEEEEecCCCcEEEEEEeCC--------CcEEEEEcCCceEEEeeCCCC
Q 001343 427 KHLIQLYSYAGSNDLRQHSQID--A-HVGAVNDLAFAYPNKLLCVVTCGDD--------KLIKVWELSGRKLFNFEGHEA 495 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~--~-h~~~v~~l~~s~d~~~~~l~s~s~d--------~~i~iwd~~~~~~~~~~~~~~ 495 (1096)
. .+.++|..+++... +.... . .....+.+++.++|+ +.++.... |.|..++..++...... .-.
T Consensus 60 ~-~~~~~d~~~g~~~~-~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~ 134 (246)
T PF08450_consen 60 G-GIAVVDPDTGKVTV-LADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPDGKVTVVAD-GLG 134 (246)
T ss_dssp T-CEEEEETTTTEEEE-EEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEE-EES
T ss_pred C-ceEEEecCCCcEEE-EeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCCCeEEEEec-Ccc
Confidence 4 45556988875432 22221 2 445789999999998 66665543 45777774455433333 345
Q ss_pred CeEEEEeeecCCCcEE-EEEECCCeEEEEEcCCCCe-e---eEE-eCCC--CcEEEEEEcCCCCEEEEEeeccCCCCeEE
Q 001343 496 PVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGS-R---VDY-DAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~-~---~~~-~~~~--~~i~~l~~s~~~~~l~~~~~~~~~~~~i~ 567 (1096)
..+.++|++ +++.| ++-+..+.|..++++.... . ..+ .... ...-.+++..+|+..++... .+.|.
T Consensus 135 ~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV 208 (246)
T ss_dssp SEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred cccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence 578999977 55555 4667788999999875443 1 112 2222 34888999999987777654 88999
Q ss_pred EEeCCCCeeeEEEcCcCccceEEEEEe-CCCCEEEEEE
Q 001343 568 EWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1096)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 604 (1096)
+++.. |+.+..+..... .+++++|. ++.+.|++.+
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 99988 888888877644 77888994 5666665544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-07 Score=92.53 Aligned_cols=164 Identities=16% Similarity=0.117 Sum_probs=122.3
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeE
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i 430 (1096)
+|+-+-.-+-++.+.+-.|-+-|+++|-... |. .++.|.++.|...+..+..|+.+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence 6664432223444577889999999876432 22 67789999999999999999999999
Q ss_pred EEEEccCCCcc--ccceeecccccCEEEEEEec-CCCcEEEEEEeCCCcEEEEE-cCCce---EEEeeCCCCCeEEEEee
Q 001343 431 QLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 431 ~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~---~~~~~~~~~~v~~~~~~ 503 (1096)
.++|+..+..- ... .---|...|+++.... +++ +|++.+.+|.|++|| ..-++ +.++.||-..-.-+-++
T Consensus 277 ~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred EEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 99999865211 111 1224899999998877 566 899999999999999 55555 88999997665555555
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 538 (1096)
-.+....+++++.|...|||.++.+....+.....
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 55566789999999999999999888777665443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.5e-05 Score=79.20 Aligned_cols=221 Identities=14% Similarity=0.089 Sum_probs=138.8
Q ss_pred CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccce
Q 001343 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445 (1096)
Q Consensus 366 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 445 (1096)
+|.|..||..+|+.+-+.. +..-.....+. ..+++.++++++.++.|..||..+|+.+-...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-----------------~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-----------------LGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-----------------CSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEE-----------------CCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence 6889999999998875421 11101122211 23367778888899999999999998665332
Q ss_pred eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe-eCCCCC---eEEEEeeecCCCcEEEEEECCCeE
Q 001343 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAP---VYSICPHHKENIQFIFSTAIDGKI 520 (1096)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~~~~~---v~~~~~~~~~~~~~l~s~~~dg~i 520 (1096)
+.+..... ... ++. .++.++.++.++.+| .+|+.+... ...... ........ .+..++.+..++.|
T Consensus 64 -~~~~~~~~---~~~-~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l 134 (238)
T PF13360_consen 64 -LPGPISGA---PVV-DGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV--DGDRLYVGTSSGKL 134 (238)
T ss_dssp -CSSCGGSG---EEE-ETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE--ETTEEEEEETCSEE
T ss_pred -ccccccce---eee-ccc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceE--ecCEEEEEeccCcE
Confidence 22211111 222 334 466677888999999 999999884 433111 11222222 24678888889999
Q ss_pred EEEEcCCCCeeeEEeCCCCc----------EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEE
Q 001343 521 KAWLYDTMGSRVDYDAPGHW----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~----------i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~ 590 (1096)
..+|.++++.+......... +..-.+..++ .++.+.. ++.+..+|..+++.+.... .. ....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~----~g~~~~~d~~tg~~~w~~~-~~--~~~~ 206 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG----DGRVVAVDLATGEKLWSKP-IS--GIYS 206 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC----TSSEEEEETTTTEEEEEEC-SS---ECE
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC----CCeEEEEECCCCCEEEEec-CC--CccC
Confidence 99999999998877664422 1222233344 5555554 5544444999999664333 22 2221
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 001343 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (1096)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1096)
.....+..+++++.++.|..||+.+++.+..
T Consensus 207 -~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 207 -LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred -CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 1456788888888999999999999987753
|
... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.6e-05 Score=79.77 Aligned_cols=218 Identities=15% Similarity=0.112 Sum_probs=139.6
Q ss_pred CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeec
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK 505 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~ 505 (1096)
+|+|..||..+|+.+-... +..-.....+..+ +++. .+++++.++.+..|| .+|+.+..+.. ..++...-. .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~~-~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~- 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVATAV-PDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-V- 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEETEE-EETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-E-
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccceEE-EeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-e-
Confidence 6889999998888765432 2111222222223 2455 577778999999999 79999888765 222221111 1
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCCeeeEE-eCCC--C-cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPG--H-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~--~-~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
++..+++++.++.+..+|..+++..... .... . .........++..++++.. ++.|+.+|.++|+.+..+.
T Consensus 75 -~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 75 -DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp -ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred -cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 2346777888999999999999998874 3221 1 1222333334777777765 8899999999999988887
Q ss_pred CcCccc---------eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 582 GFRKKS---------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 582 ~~~~~~---------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
...... +..-....++ .++.++.++.+.-+|..+++.+.... .. .+.. ....++..+++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCE
Confidence 643211 1111222234 77777777764444999999765333 21 2222 14567788888889999
Q ss_pred EEEEEcCCCc
Q 001343 653 FKILANAIGL 662 (1096)
Q Consensus 653 i~iwd~~~~~ 662 (1096)
+..||+.+++
T Consensus 224 l~~~d~~tG~ 233 (238)
T PF13360_consen 224 LYALDLKTGK 233 (238)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCC
Confidence 9999999984
|
... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-06 Score=81.90 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=103.0
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.|.+.=.+-+.+-.+.. +++|+.||.+.+.+.+.-..+.. ++ -..|. .-.+......++.|
T Consensus 87 ~~sep~p~~~~s~~~t~-V~~~~~dg~~~v~s~~~~~~~~~-~i----------------~~~~~-~~as~~~~~~~~~i 147 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNR-VCIGYADGSLAVFSTDKDLALMS-RI----------------PSIHS-GSASRKICRHGNSI 147 (319)
T ss_pred ccCCCCCcccccccCCc-eEecCCCceEEEEechHHHhhhh-hc----------------ccccc-cccccceeecccEE
Confidence 45544444444445554 89999999999999876222211 00 00111 11122222344455
Q ss_pred EEEEC-----CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-ceEEEeeCCC
Q 001343 422 GVAFT-----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHE 494 (1096)
Q Consensus 422 ~s~~~-----dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~~~ 494 (1096)
.++.. -+..+.|+++..+.+.. -..-...|.+++-+|..+. .+++|+.||.+-+|| ... .+...++.|+
T Consensus 148 ~s~~~g~~n~~d~~~a~~~~p~~t~~~---~~~~~~~v~~l~~hp~qq~-~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk 223 (319)
T KOG4714|consen 148 LSGGCGNWNAQDNFYANTLDPIKTLIP---SKKALDAVTALCSHPAQQH-LVCCGTDDGIVGLWDARNVAMPVSLLKAHK 223 (319)
T ss_pred ecCCcceEeeccceeeecccccccccc---cccccccchhhhCCccccc-EEEEecCCCeEEEEEcccccchHHHHHHhh
Confidence 44321 23456666654333221 1112234999999998776 788899999999999 544 4456678999
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (1096)
.+++.+-|+|+ ++..|+++++||.+..||..+
T Consensus 224 ~~i~eV~FHpk-~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 224 AEIWEVHFHPK-NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhheeccCC-CchheeEecCCCcEEEEcCCC
Confidence 99999999997 567899999999999998664
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-06 Score=87.89 Aligned_cols=255 Identities=13% Similarity=0.075 Sum_probs=171.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-CCcEEEEE-c
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-L 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~~i~iwd-~ 482 (1096)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|.+.|.+++.+.++. ++.|.+. |..++++| .
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77777776654 467999999999999997554232332334678999999999999998 8888777 99999999 5
Q ss_pred CCceEEEeeCCCCCeEEEEeeec-CCC--cEEEEEECCCeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHK-ENI--QFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~-~~~--~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
+-..+..++--.-|= .+.|... ++. ..-++.-.+|.+.++|-....+ ...-..|..+|..+.+++.+..+++..
T Consensus 85 n~DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred ccchhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 544443332111111 1122112 111 2223345678999998665443 334456788999999999999998876
Q ss_pred eccCCCCeEEEEeCCC------CeeeEEEcC--------cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 558 TSKDGDSFLVEWNESE------GTIKRTYAG--------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~------~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
. .|.|.-|.... .+....++. .......++.|+|++..+.+-+.|..|++++.++|+.++.+
T Consensus 164 ~----~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 I----SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred c----cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 5 78999998772 111111111 11225667999999999999999999999999998766544
Q ss_pred ecCC-------------------------------CCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccccccc
Q 001343 624 DAEG-------------------------------GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (1096)
Q Consensus 624 ~~~~-------------------------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 669 (1096)
.... ....-..+.|...|++|+.++-=| |++.++.++ .+.+.+.
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn-~v~ri~g 314 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN-TVVRILG 314 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC-eEEEEec
Confidence 3210 111234677888888888887654 888888887 4554443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-05 Score=81.19 Aligned_cols=248 Identities=13% Similarity=0.144 Sum_probs=146.3
Q ss_pred ccccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 401 IFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
++.+|...|..++|||..+ ++..++.+..|+|.|+++..... .+..| ..+++++|.-|... +|..|-.+|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5778999999999999877 78889999999999999976655 34556 78999999998876 8999999999999
Q ss_pred EE-c-CCceEEEeeC--CCCCeEEEEeeecC----CCcEEEEEECCCeEEEEEcCCCCe--eeEEe-CCCCcEEEEEEcC
Q 001343 480 WE-L-SGRKLFNFEG--HEAPVYSICPHHKE----NIQFIFSTAIDGKIKAWLYDTMGS--RVDYD-APGHWCTTMLYSA 548 (1096)
Q Consensus 480 wd-~-~~~~~~~~~~--~~~~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-~~~~~i~~l~~s~ 548 (1096)
|| . ....+..+.+ ...+|..++..+.+ .+.+++....+ +..|.+.-... ..... ...+.+.++++.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 3 3333333332 23445554432211 12233333322 34565432221 11222 2244566777777
Q ss_pred CCCEEEEEeeccCCCCeEE----EEeCCCCeeeEEEc-Cc---Cccc---eEEEEEeCCCCEEEE-EEcCCeEEEEeCCC
Q 001343 549 DGSRLFSCGTSKDGDSFLV----EWNESEGTIKRTYA-GF---RKKS---NGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~-~~---~~~~---i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 616 (1096)
-.+.++....++..-..++ --|..+|..+..-+ ++ .... -..+.-.++.++++. +++.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666665544321111111 11222333222111 11 0000 011222344455554 45667899999999
Q ss_pred CeEEEEeecCCCCCCccEEEEeC-CC-CEEEEEECCCcEEEEEcC
Q 001343 617 VNILTSTDAEGGLPNLPRLRFSK-EG-NLLAVTTADNGFKILANA 659 (1096)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~-~~-~~l~~~~~dg~i~iwd~~ 659 (1096)
++.++.+.... +|.++.... ++ .+|++-. |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999988763 677776554 33 4555555 4478887654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.3e-05 Score=89.06 Aligned_cols=272 Identities=14% Similarity=0.172 Sum_probs=159.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
.+.|.++.|.-++.. ++.+..+|.|.+-|..+..... ...-.+.|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 358999999999985 6777899999999888765432 2334678999999999999999
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc-----eEEEee-----C
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-----KLFNFE-----G 492 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~-----~~~~~~-----~ 492 (1096)
.+..+++.+..-. -..+... .+ ...-.+.++ .++++..+.=.-+. ..|+ .+...+ .
T Consensus 127 iT~~~tll~mT~~-f~~i~E~-~L--------~~d~~~~sk---~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKD-FEPIAEK-PL--------DADDERKSK---FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred EeCCcEEEEEecc-ccchhcc-cc--------ccccccccc---cceecccccceeeecchhhhcccccccccccccchh
Confidence 9988888765431 1222110 01 011111121 33333222111111 1111 111100 0
Q ss_pred CCCCeEEEEeeecCCCcEEEEE-----ECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEE
Q 001343 493 HEAPVYSICPHHKENIQFIFST-----AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~ 567 (1096)
..+.=++++| .+||+++++. ...+.|++||-+ +.....-......-.+++|-|.|..+++.....+ +..|.
T Consensus 194 ~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~Iv 269 (1265)
T KOG1920|consen 194 QDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIV 269 (1265)
T ss_pred hccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEE
Confidence 1122345666 5688888873 233799999866 2222222222334568999999999998775433 55788
Q ss_pred EEeCCC---CeeeEEEcCcCccceEEEEEeCCCCEEEE---EEcCCeEEEEeCCCCeEEE--EeecCCCCCCccEEEEeC
Q 001343 568 EWNESE---GTIKRTYAGFRKKSNGVVQFDTTQNHFLA---VGEDSQIKFWDMDNVNILT--STDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 568 iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~ 639 (1096)
++.-+. |...-.+..... .+..++|+.++..|++ ......|++|.+.+..... .+..... .-+.|+|
T Consensus 270 ffErNGL~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p 344 (1265)
T KOG1920|consen 270 FFERNGLRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDP 344 (1265)
T ss_pred EEecCCccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccC
Confidence 887432 222222222222 3788999999998888 4455669999998865433 2332222 2288998
Q ss_pred CC-CEEEEEECCCcEEEEEc
Q 001343 640 EG-NLLAVTTADNGFKILAN 658 (1096)
Q Consensus 640 ~~-~~l~~~~~dg~i~iwd~ 658 (1096)
.. ..+.+-..+|...+++.
T Consensus 345 ~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 345 VTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CCceeEEEEecCCcEEEEEE
Confidence 33 34444446777776665
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.01 Score=69.01 Aligned_cols=595 Identities=12% Similarity=0.079 Sum_probs=287.5
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC---
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--- 417 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--- 417 (1096)
++..+-..|+.+-++| +|.+||.-|.=.+-.+.+.....+ ...+. + .+ ..-++|..+..-.+
T Consensus 303 lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs-y~~il---------e--t~-~NLgPI~Dm~Vvd~d~q 367 (1096)
T KOG1897|consen 303 LGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS-YVVIL---------E--TF-VNLGPIVDMCVVDLDRQ 367 (1096)
T ss_pred cCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc-hhhhh---------h--hc-ccccceeeEEEEecccc
Confidence 3444556777777787 688898877656666554332211 00000 0 01 12346777666442
Q ss_pred -CCEEEEEE---CCCeEEEEEccCCCccccceeecccccCEEEEE--EecCCCcEEEEEEeCCCcEEEEEcCCceEE-Ee
Q 001343 418 -GNYVGVAF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWELSGRKLF-NF 490 (1096)
Q Consensus 418 -~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~--~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~-~~ 490 (1096)
+..+++|+ .||++++..-.-+-.......+.| ...++.+. +.+.-.. +|+.+-.+ .-++...+++... ..
T Consensus 368 ~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~ 444 (1096)
T KOG1897|consen 368 GQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETED 444 (1096)
T ss_pred CCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEecc
Confidence 23555554 478999986543322222224556 55677777 4443222 34433323 3344443443211 12
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
.+.......+..+.. +++.|+=.. ...||+++-. .....+...++ ++....+.+...++.++. ++.+...+
T Consensus 445 ~gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y~~ 515 (1096)
T KOG1897|consen 445 PGFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFYLE 515 (1096)
T ss_pred ccccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEEEE
Confidence 222333333333322 223332222 2346666433 22333333333 344444455556666553 56777777
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCC------CEEEEEEcCCeEEEEe-CCCCeEEEEee--cCCCCCCccEEEEeCCC
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQ------NHFLAVGEDSQIKFWD-MDNVNILTSTD--AEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~~dg~i~iwd-~~~~~~~~~~~--~~~~~~~v~~~~~s~~~ 641 (1096)
+..+......+......+.|+.++|-| +++++|..+..+.+.- ..+...+.... ...-...|.-..+-.|.
T Consensus 516 i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~ 595 (1096)
T KOG1897|consen 516 IEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI 595 (1096)
T ss_pred eeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc
Confidence 766664333333333478888888742 2677777555544433 33333333222 21111234444555578
Q ss_pred CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEe-ccCCCc----CCCccc
Q 001343 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE-RSSPVR----PSPIIN 716 (1096)
Q Consensus 642 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~-~~~~~~----~~~~~~ 716 (1096)
.+|.++..||.+.-|.+....-.....+.... -..|+.--.|+..++.-+.+.+......+ ...... .++.+.
T Consensus 596 ~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l--Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~ 673 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDINTGQLSDRKKVTL--GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVN 673 (1096)
T ss_pred eEEEEEcCCceEEEEEEEcccceEcccccccc--CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhh
Confidence 89999999999887765543212211111111 11233333444444332222222211111 111100 000010
Q ss_pred CCCCccCCCC-CCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccC
Q 001343 717 GVDPTSRSMD-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 795 (1096)
Q Consensus 717 ~~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~ 795 (1096)
....-.++.. ..++++. .+.+++..+++. +.-..+.+. -....+.+++.+....+.+.+.......=
T Consensus 674 ~~c~f~s~a~~d~l~~~~-~~~l~i~tid~i-qkl~irtvp------l~~~prrI~~q~~sl~~~v~s~r~e~~~~---- 741 (1096)
T KOG1897|consen 674 HMCPFNSDAYPDSLASAN-GGALTIGTIDEI-QKLHIRTVP------LGESPRRICYQESSLTFGVLSNRIESSAE---- 741 (1096)
T ss_pred hhcccccccCCceEEEec-CCceEEEEecch-hhcceeeec------CCCChhheEecccceEEEEEecccccchh----
Confidence 0011011111 1222222 255666665531 112222222 23356677777744433333332111100
Q ss_pred CccCCCCceeeecCccccccCccccccccccCCCcCCCee---eeeecCC-CcEEEEec-----------CCeEEEEEcc
Q 001343 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP---CIALSKN-DSYVMSAT-----------GGKISLFNMM 860 (1096)
Q Consensus 796 ~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~---~l~~s~d-g~~la~~~-----------dg~v~iwd~~ 860 (1096)
. .+.......++++|..+-+.+...-- .....+. +..|..| +.++++|. .|.|.||.+.
T Consensus 742 -~---~~ee~~~s~l~vlD~nTf~vl~~hef--~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~ 815 (1096)
T KOG1897|consen 742 -Y---YGEEYEVSFLRVLDQNTFEVLSSHEF--ERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE 815 (1096)
T ss_pred -h---cCCcceEEEEEEecCCceeEEeeccc--cccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe
Confidence 0 11112223566677666654432111 1233333 3447777 67877763 2678888887
Q ss_pred cceEEEeecCC--CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEE
Q 001343 861 TFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 938 (1096)
Q Consensus 861 ~~~~~~~~~~h--~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 938 (1096)
.++.++....+ .+.+.++..- +|++||. -+..|++|+....+ .++.-..+.. .+..+.
T Consensus 816 e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~---------------eLr~e~~~~~-~~~aL~ 875 (1096)
T KOG1897|consen 816 ELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTER---------------ELRIECNISN-PIIALD 875 (1096)
T ss_pred cCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccc---------------eehhhhcccC-CeEEEE
Confidence 65544444322 3455555433 4655553 45679999988775 4555555555 788888
Q ss_pred EecCCcEEEEE-ecceEEE--EEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecC
Q 001343 939 FNADQVRMLVV-HETQLAI--YDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1005 (1096)
Q Consensus 939 fs~dg~~l~~~-~d~~i~i--wd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~ 1005 (1096)
..-.|..++++ --+.+.+ |+-..|........-+ ....+++.+-.+..|+. +..+|.+++-..+
T Consensus 876 l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~--p~Wmtaveil~~d~ylg-ae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 876 LQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYN--PNWMTAVEILDDDTYLG-AENSGNLFTVRKD 942 (1096)
T ss_pred EEecCcEEEEeeccceEEEEEEeccCCceEEeehhhC--ccceeeEEEecCceEEe-ecccccEEEEEec
Confidence 88889999883 4454444 5555544433333322 67788888766666555 6778888876654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=87.37 Aligned_cols=164 Identities=12% Similarity=0.143 Sum_probs=122.1
Q ss_pred EEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC----Ceee
Q 001343 457 LAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM----GSRV 532 (1096)
Q Consensus 457 l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~ 532 (1096)
++|+-+-.... ++.+.+-.|-+-|..+.....|. ..+.|.++.|+. .+++++.|+.+|.|...|++.. ....
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 35654333213 55666778888884444444555 567788888865 3479999999999999999876 3344
Q ss_pred EEeCCCCcEEEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCCCee---eEEEcCcCccce-EEEEEeCCCCEEEEEEcCC
Q 001343 533 DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSN-GVVQFDTTQNHFLAVGEDS 607 (1096)
Q Consensus 533 ~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg 607 (1096)
..-.|...|+++..-. ++.+|++.+. ++.|.+||.+.-++ ++++.||-+... .-+.+.+....+++++.|.
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCee
Confidence 5557788899998877 7778887766 99999999987666 889999865321 2244567778899999999
Q ss_pred eEEEEeCCCCeEEEEeecCCC
Q 001343 608 QIKFWDMDNVNILTSTDAEGG 628 (1096)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~ 628 (1096)
..+||.++.+.++.++.....
T Consensus 369 ytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred EEEEEecccCceeeccCCCCc
Confidence 999999999999998876543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0002 Score=74.60 Aligned_cols=294 Identities=18% Similarity=0.203 Sum_probs=152.8
Q ss_pred CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE----------CCCcEEEEEcCCCccccccccCCCc--c
Q 001343 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT----------ADNGFKILANAIGLRSLRAVENPPF--E 674 (1096)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~--~ 674 (1096)
++++++|.++++.+..+... ..-.+..+|+++.+++++ ..-.|.+||..+- .....+.-+.. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecc----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCCcchh
Confidence 47999999999998888754 335678899999998764 2346999999876 22222221111 0
Q ss_pred cccCcceeEEeecCCCeE-EecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceE
Q 001343 675 ALRTPIESVALKVSASSA-VSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCR 753 (1096)
Q Consensus 675 ~~~~~v~~~~~s~~g~~l-v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 753 (1096)
..-......+++.||+++ +..++|. ..|.+.|+.. .+-..
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa------------------------------------~SVtVVDl~~---~kvv~ 132 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPA------------------------------------TSVTVVDLAA---KKVVG 132 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSS------------------------------------EEEEEEETTT---TEEEE
T ss_pred eecccccceEEccCCcEEEEEccCCC------------------------------------CeEEEEECCC---Cceee
Confidence 011233456778888776 3333332 4456666652 22233
Q ss_pred EEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCC
Q 001343 754 LVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEA 833 (1096)
Q Consensus 754 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~ 833 (1096)
.+..|| +.+.|-.....+.+.|.||.+.-..++. +|+.... .-.+++... ...
T Consensus 133 ei~~PG--------C~~iyP~~~~~F~~lC~DGsl~~v~Ld~-----~Gk~~~~-~t~~F~~~~-------------dp~ 185 (342)
T PF06433_consen 133 EIDTPG--------CWLIYPSGNRGFSMLCGDGSLLTVTLDA-----DGKEAQK-STKVFDPDD-------------DPL 185 (342)
T ss_dssp EEEGTS--------EEEEEEEETTEEEEEETTSCEEEEEETS-----TSSEEEE-EEEESSTTT-------------S-B
T ss_pred eecCCC--------EEEEEecCCCceEEEecCCceEEEEECC-----CCCEeEe-eccccCCCC-------------ccc
Confidence 445555 1222211224588889999988888764 2332211 112333221 111
Q ss_pred eeeeeecC-CCcEEEEecCCeEEEEEcccceE--EEeecCCCCCeeEEEEecCCCcEEEEe-eCCCeEEEEeeccceeee
Q 001343 834 VPCIALSK-NDSYVMSATGGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIG-TEDSTIHIYNVRVDELCV 909 (1096)
Q Consensus 834 v~~l~~s~-dg~~la~~~dg~v~iwd~~~~~~--~~~~~~h~~~i~~l~~s~~d~~~l~s~-~~dg~i~iw~~~~~~~~~ 909 (1096)
...-+++. +++++....+|.|+--|+..... ...+..-...-..-.|-| +|-.++.. -..+.+.+. +..+.
T Consensus 186 f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP-GG~Q~~A~~~~~~rlyvL-Mh~g~--- 260 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP-GGWQLIAYHAASGRLYVL-MHQGG--- 260 (342)
T ss_dssp -S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE--SSS-EEEETTTTEEEEE-EEE-----
T ss_pred ccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC-cceeeeeeccccCeEEEE-ecCCC---
Confidence 22233443 34565555578877777643321 111110000000113444 33332222 223333321 11110
Q ss_pred eeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCc-
Q 001343 910 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ- 988 (1096)
Q Consensus 910 w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~- 988 (1096)
...|.. ....|.++|+++++.+.++.. ..++.++.++.|.+
T Consensus 261 ----------------~gsHKd------------------pgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 261 ----------------EGSHKD------------------PGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKP 302 (342)
T ss_dssp ----------------TT-TTS-------------------EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-
T ss_pred ----------------CCCccC------------------CceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCc
Confidence 111111 124689999999999999875 34588999999887
Q ss_pred EEEEE-ecCCcEEEEecCCCceeEEEc
Q 001343 989 LVFAT-FCDGNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 989 ~la~~-~~dg~i~vwd~~~~~~~~~~~ 1014 (1096)
+|++. ..++.+.|||..+|++...+.
T Consensus 303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 45443 457899999999999776665
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0001 Score=81.80 Aligned_cols=285 Identities=13% Similarity=0.099 Sum_probs=163.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
|...|.--+++..++ +++.|+.-|.+.+|+-..++.... ...+..+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 445666667777788 699999999999999887775431 1333556677788999999999
Q ss_pred EEECCCeEEEEEccCCCccccceee---cccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCce-----EEEeeCCC
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK-----LFNFEGHE 494 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l---~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~~ 494 (1096)
.|+..|.|.|+-++.+........- ..|+..|++++|++++. .+++|...|.|..-..+... .+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 9999999999998875433222111 24788999999999999 89999999999887733311 12233345
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-CC-cEEEEEEcCC-----CCEEEEEeeccCCCCeEE
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GH-WCTTMLYSAD-----GSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~-~i~~l~~s~~-----~~~l~~~~~~~~~~~~i~ 567 (1096)
+.|..+... ++ +|++++.-..+ +++.+.......-+.. .+ .-...+|-|. ...|+++ .-..+
T Consensus 171 s~IVQlD~~---q~-~LLVStl~r~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca------RPG~R 239 (726)
T KOG3621|consen 171 SEIVQLDYL---QS-YLLVSTLTRCI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA------RPGLR 239 (726)
T ss_pred cceEEeecc---cc-eehHhhhhhhh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe------cCCCc
Confidence 566666643 22 33333332222 3443322211111111 11 0122233332 2344443 44567
Q ss_pred EEeCC-CCeeeEEEcCcC------ccce--E---------------EEEE----eCCCCEEEEEEcCCeEEEEeCCCCeE
Q 001343 568 EWNES-EGTIKRTYAGFR------KKSN--G---------------VVQF----DTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 568 iwd~~-~~~~~~~~~~~~------~~~i--~---------------~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1096)
+|... .|+.+++..-.. ...+ . .+.+ .-.+..+++-++-| |+|+|..+.+.
T Consensus 240 lWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v 318 (726)
T KOG3621|consen 240 LWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQV 318 (726)
T ss_pred eEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceE
Confidence 78764 344444432100 0000 0 0000 01122344444444 88888877665
Q ss_pred EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccc
Q 001343 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 665 (1096)
+.-..... .|.+++ ..++-|++-..|+.+++..+.+..+.+
T Consensus 319 ~l~se~~~---DI~dVs--~~~neiFvL~~d~~l~~~sv~s~qr~l 359 (726)
T KOG3621|consen 319 YLWSEGGH---DILDVS--HCGNEIFVLNLDRGLKVESVASRQRKL 359 (726)
T ss_pred EEeecCCC---ceeEEe--ecCceEEEEecCCceeEEEeehhHHHH
Confidence 55443222 344444 356677777778878877776664433
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00012 Score=82.39 Aligned_cols=147 Identities=11% Similarity=0.134 Sum_probs=89.0
Q ss_pred eecCCCcEEEEecCCeEEEEEccc-----ceEEEeecCCCCCeeEEEEecCCCcEEEEee-CCCeEEEEeeccceeeeee
Q 001343 838 ALSKNDSYVMSATGGKISLFNMMT-----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDELCVWS 911 (1096)
Q Consensus 838 ~~s~dg~~la~~~dg~v~iwd~~~-----~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~-~dg~i~iw~~~~~~~~~w~ 911 (1096)
++.++|++... .+++|.+.|..+ .+.+..+. -......++++| ||+++++++ .+.+|.|.|+.+.+.. +
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~-~- 357 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDL-F- 357 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhh-h-
Confidence 34568877665 467899999987 34555443 345677899999 888776655 5899999999875500 0
Q ss_pred ccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccc----------eeccccc----cCCCCCC
Q 001343 912 IDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKM----------ERIRQWT----PQDALSA 976 (1096)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~----------~~~~~~~----~~~~~~~ 976 (1096)
-+.++......-+..-|. .-...+|.++|....+ --|..|..|++.+. ..+..+. ++| ..
T Consensus 358 ~~~~~~~~~vvaevevGl---GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh--~~ 432 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGL---GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGH--NH 432 (635)
T ss_pred hccCCccceEEEeeccCC---CcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccce--ee
Confidence 000111111111122232 4467889999986666 68999999999862 2222222 222 11
Q ss_pred CceEEEEeeCCcEEEEEe
Q 001343 977 PISCAVYSCNSQLVFATF 994 (1096)
Q Consensus 977 ~i~~l~~s~dg~~la~~~ 994 (1096)
....=.-.|||+||++..
T Consensus 433 ~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 433 ASMGETKEADGKWLVSLN 450 (635)
T ss_pred ecCCCcCCCCCCEEEEcc
Confidence 111222368999998765
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00094 Score=64.97 Aligned_cols=143 Identities=9% Similarity=0.090 Sum_probs=93.1
Q ss_pred cCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 001343 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQL 432 (1096)
Q Consensus 353 sp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~v 432 (1096)
-+|.+.+++.|+..+.+.--|..+|...-+.. + ...|.+-+.- -|++++.|+..|.+++
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~lYf 77 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGGLYF 77 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCcEEE
Confidence 34556689999999999999999998764311 1 2233332222 4778999999999999
Q ss_pred EEccCCCccccceeecccccCE-EEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcE
Q 001343 433 YSYAGSNDLRQHSQIDAHVGAV-NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQF 510 (1096)
Q Consensus 433 wd~~~~~~~~~~~~l~~h~~~v-~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 510 (1096)
.+.++|.....+..+. .| ......+++. ++..|+.|++.+..| .+..++...+...+...+-++.+. + ..
T Consensus 78 l~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~s 149 (354)
T KOG4649|consen 78 LCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-GS 149 (354)
T ss_pred EEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-ce
Confidence 9999997665432221 22 2233456777 899999999999999 888888887644433333344332 2 24
Q ss_pred EEEEECCCeEEEEE
Q 001343 511 IFSTAIDGKIKAWL 524 (1096)
Q Consensus 511 l~s~~~dg~i~iwd 524 (1096)
|+.+...|.+.--.
T Consensus 150 ly~a~t~G~vlavt 163 (354)
T KOG4649|consen 150 LYAAITAGAVLAVT 163 (354)
T ss_pred EEEEeccceEEEEc
Confidence 44555555554333
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0014 Score=63.89 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=90.5
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC-
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA- 495 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~- 495 (1096)
..+++.|+..+.++--|..+|+.+-.. + -...|.+-+.- -|+ +++.|...|.+++.+ .+|.....+.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~--i--lg~RiE~sa~v-vgd--fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--I--LGVRIECSAIV-VGD--FVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh--h--hCceeeeeeEE-ECC--EEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 456778888899999999998765431 1 22334333333 355 789999999999999 89988877754322
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC-CCCEEE
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLF 554 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~ 554 (1096)
.+...+ +.++..+..|+.|++.+..|..+..++.+.+..+....+-++.+ ++...+
T Consensus 96 k~~a~~---d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 96 KVRAQC---DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred ccceEE---cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence 222222 34678999999999999999999999998877777667777777 444433
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-06 Score=59.73 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=37.0
Q ss_pred ceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEe
Q 001343 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1096)
Q Consensus 862 ~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~ 901 (1096)
|+++.++.+|.+.|++|+|+| ++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 468899999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.29 E-value=2e-06 Score=59.87 Aligned_cols=37 Identities=27% Similarity=0.623 Sum_probs=33.1
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWE 373 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd 373 (1096)
++++++. |.+.|++++|+|++. ++++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 4566666 999999999999998 799999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-05 Score=86.87 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=128.8
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
..+.++|++++.. ++|-|+.+|.|.+.+....- .+ ...|... ..+|.|++
T Consensus 38 ~~D~is~~av~~~---~~~~GtH~g~v~~~~~~~~~--~~-------------------~~~~s~~------~~~Gey~a 87 (846)
T KOG2066|consen 38 QNDAISCCAVHDK---FFALGTHRGAVYLTTCQGNP--KT-------------------NFDHSSS------ILEGEYVA 87 (846)
T ss_pred hhhHHHHHHhhcc---eeeeccccceEEEEecCCcc--cc-------------------ccccccc------ccCCceEE
Confidence 4567889998753 79999999999999976332 11 2224433 56899999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC-----CCcEEEEEEeCCCcEEEEE--cCCceE-EEeeCCC
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-----NKLLCVVTCGDDKLIKVWE--LSGRKL-FNFEGHE 494 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d-----~~~~~l~s~s~d~~i~iwd--~~~~~~-~~~~~~~ 494 (1096)
+|+.||.|.|-.+.+.+.... ..-..++.+++++|+ .+ .+++||.-| +.++. .-|+.. ..+..-.
T Consensus 88 sCS~DGkv~I~sl~~~~~~~~----~df~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 88 SCSDDGKVVIGSLFTDDEITQ----YDFKRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred EecCCCcEEEeeccCCcccee----EecCCcceeEEeccchhhhhhh--heeecCcce-EEEehhhhhcCccceeeecCc
Confidence 999999999999888765542 134568999999998 34 689999888 77776 223332 2466678
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCc------EEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW------CTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
++|.+++| .|++++-++.+| |++||..+.+.+......... ...+.|.++.+.++.- ..+|++
T Consensus 161 G~I~~i~W----~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW------~d~v~i 229 (846)
T KOG2066|consen 161 GPIHSIKW----RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW------GDSVKI 229 (846)
T ss_pred cceEEEEe----cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEec------CCeEEE
Confidence 89999999 446888887666 789999887776655443332 3457777666555443 346777
Q ss_pred EeCC
Q 001343 569 WNES 572 (1096)
Q Consensus 569 wd~~ 572 (1096)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 7666
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00043 Score=76.75 Aligned_cols=299 Identities=15% Similarity=0.171 Sum_probs=153.7
Q ss_pred cCCCCcEEEEE--------eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 353 HPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 353 sp~g~~llasg--------~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
|||++++|+.- +..+.+.|||+.+++... +......+....|||+|+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68888644422 234678999999876543 11125578889999999999988
Q ss_pred ECCCeEEEEEccCCCccccceeecc-------c---------ccCEEEEEEecCCCcEEEEEEe-CCCcEEEEEcCCceE
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDA-------H---------VGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWELSGRKL 487 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~-------h---------~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd~~~~~~ 487 (1096)
. ++.|.+++..++...+. +..| - -+.-..+.||||++ .|+... .+..|..+. +
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~--~la~~~~d~~~v~~~~-----~ 130 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK--YLAFLRFDEREVPEYP-----L 130 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS--EEEEEEEE-TTS-EEE-----E
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCC--EEEEEEECCcCCceEE-----e
Confidence 5 57999999877643321 1122 0 11235688999999 455443 233443332 0
Q ss_pred EEeeCCC---CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEe----CCCCcEEEEEEcCCCCEEEEEeec
Q 001343 488 FNFEGHE---APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYD----APGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 488 ~~~~~~~---~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~----~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
....... -.+..+.+-..++. . ..-.+.++|+.+++... ... .....+..+.|.++++.++..-.+
T Consensus 131 ~~~~~~~~~yp~~~~~~YPk~G~~--n----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 131 PDYSPPDSQYPEVESIRYPKAGDP--N----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp EEESSSTESS-EEEEEE--BTTS---------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCccccCCcccccccCCCCCc--C----CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 0001111 12333333111111 1 11135567777665532 211 234478999999999955554444
Q ss_pred cCC-CCeEEEEeCCCCeeeEEEcCcCccc---eEEEEEe-CCCCEEEE-EEcCC--eEEEEeCCCCeEEEEeecCCCCCC
Q 001343 560 KDG-DSFLVEWNESEGTIKRTYAGFRKKS---NGVVQFD-TTQNHFLA-VGEDS--QIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 560 ~~~-~~~i~iwd~~~~~~~~~~~~~~~~~---i~~~~~~-~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
+++ ...+.+.|..++............- .....+. +++..++. ...+| .|++++...+... .+.... -.
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~--~~ 281 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD--WE 281 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS--S-
T ss_pred cCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc--ee
Confidence 432 3456677887766544443322211 1234444 66655444 44566 4666676666644 333222 25
Q ss_pred cc-EEEEeCCCCEEE-EEECC--Cc--EEEEEcC-CCccccccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 632 LP-RLRFSKEGNLLA-VTTAD--NG--FKILANA-IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 632 v~-~~~~s~~~~~l~-~~~~d--g~--i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
|. -+.++++++.|+ ++..+ +. +..-++. .+ ..+.+....... ..+.|||+|++++...+
T Consensus 282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--~~~~LT~~~~~~-----~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--EPKCLTCEDGDH-----YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--EEEESSTTSSTT-----EEEEE-TTSSEEEEEEE
T ss_pred ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--CeEeccCCCCCc-----eEEEECCCCCEEEEEEc
Confidence 64 467888776655 44432 23 4444454 22 233333222111 46899999999865543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00022 Score=80.87 Aligned_cols=204 Identities=13% Similarity=0.167 Sum_probs=132.5
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCC-EEEEEEcCCCCEEEEEECCC-
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSPDGNYVGVAFTKH- 428 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spd~~~l~s~~~dg- 428 (1096)
+|++.+. .+|.|+.+|.|.+.+-. -+.+.. ++.+... |..+-...+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s-~~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSS-FQLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEeccc-ceeeeh-------------------heecchhhhhHhhcccCceEEEEEeecCC
Confidence 3566666 69999999999888742 111111 3445445 44444444457888877664
Q ss_pred ----eEEEEEccCCC------ccccceee----cccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE---c--CCceEEE
Q 001343 429 ----LIQLYSYAGSN------DLRQHSQI----DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---L--SGRKLFN 489 (1096)
Q Consensus 429 ----~i~vwd~~~~~------~~~~~~~l----~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd---~--~~~~~~~ 489 (1096)
.++||+++.-+ ++...+.+ .....++.+++.+.+-+ .+|.|-.||.|..+. . .|....-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence 58999987432 22111111 12356789999999977 899999999999985 1 2222222
Q ss_pred eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
......+|+.+.+.. ++..++-+.....|.+|.+....+.. .+..++....|..+++....+++++ ...+.+
T Consensus 167 ~~~~~~pITgL~~~~--d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~f 239 (933)
T KOG2114|consen 167 SHRGKEPITGLALRS--DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLYF 239 (933)
T ss_pred eccCCCCceeeEEec--CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEEE
Confidence 233467899999965 44443344445678899988555333 4677777899999988777566665 668999
Q ss_pred EeCCCCeeeEEEc-CcC
Q 001343 569 WNESEGTIKRTYA-GFR 584 (1096)
Q Consensus 569 wd~~~~~~~~~~~-~~~ 584 (1096)
|+......-..|. ++.
T Consensus 240 Y~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 240 YDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EcCCCcceeeeecCCCe
Confidence 9988666666665 443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.8e-05 Score=88.73 Aligned_cols=190 Identities=17% Similarity=0.215 Sum_probs=129.5
Q ss_pred CCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeee
Q 001343 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCV 909 (1096)
Q Consensus 831 ~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~ 909 (1096)
...++|+++ .++++|.|. +|.|++++. .|.. .+...|... .. +|.++++++.||+|.|-.+-+++
T Consensus 39 ~D~is~~av--~~~~~~~GtH~g~v~~~~~-~~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~--- 104 (846)
T KOG2066|consen 39 NDAISCCAV--HDKFFALGTHRGAVYLTTC-QGNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDD--- 104 (846)
T ss_pred hhHHHHHHh--hcceeeeccccceEEEEec-CCcc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCc---
Confidence 466777777 467999999 799999997 4444 444455544 44 89999999999999999888776
Q ss_pred eeccccccccceeeecCCCCCCCCCceEEEecC-----CcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEe
Q 001343 910 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-----QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS 984 (1096)
Q Consensus 910 w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~d-----g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s 984 (1096)
.....+-+ ..+.+++++|| .+.+++|.+..+.++.-.=.........+ ...++|.++.|
T Consensus 105 ------------~~~~~df~--rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~-~~eG~I~~i~W- 168 (846)
T KOG2066|consen 105 ------------EITQYDFK--RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLS-EGEGPIHSIKW- 168 (846)
T ss_pred ------------cceeEecC--CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeee-cCccceEEEEe-
Confidence 11122222 27899999999 45777743333766654311111111111 12889999998
Q ss_pred eCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 985 CNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 985 ~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
.|.++|=++.+| |+|||..+.+.+..+.++...+.. ..++..+.|.+ ...|+.| ...+|+|..|..
T Consensus 169 -~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~------e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 169 -RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP------ELFPPHLHWQD--EDRLVIG-WGDSVKICSIKK 234 (846)
T ss_pred -cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc------ccCCCceEecC--CCeEEEe-cCCeEEEEEEec
Confidence 677888776665 999999999877776655533322 45555689986 5666665 677999999983
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0001 Score=75.92 Aligned_cols=244 Identities=13% Similarity=0.137 Sum_probs=138.3
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC-E
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-Y 420 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~ 420 (1096)
.|+..|..++|||...-|+..++.+.+|.|.|+++...+.. +..| ..+++++|.-|.. +
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCCcce
Confidence 38889999999999887888999999999999998776643 3334 7899999998755 5
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEe------cCCCcEEEEEEeCCCcEEEEEc---CCceEEEee
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------YPNKLLCVVTCGDDKLIKVWEL---SGRKLFNFE 491 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s------~d~~~~~l~s~s~d~~i~iwd~---~~~~~~~~~ 491 (1096)
|..|..+|.|.|||+...+.......-.-...+|..++.. +.|. +++..+.+ ...|+. .+.....++
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECLPCVLE 326 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCCCcccc
Confidence 6677788999999998655433211111223345444432 3343 44444433 445661 122222121
Q ss_pred -CCCCCeEEEEeeecCCCcEEEEEECCCe------EEE-EEcCCCCeeeEE-eCC-CC------cEEEEEEcCCCCEEEE
Q 001343 492 -GHEAPVYSICPHHKENIQFIFSTAIDGK------IKA-WLYDTMGSRVDY-DAP-GH------WCTTMLYSADGSRLFS 555 (1096)
Q Consensus 492 -~~~~~v~~~~~~~~~~~~~l~s~~~dg~------i~i-wd~~~~~~~~~~-~~~-~~------~i~~l~~s~~~~~l~~ 555 (1096)
+..+...++..++..+ ..|++.-.+.+ |-. -|...+..+... ..+ +. .-..+.-.++.++++.
T Consensus 327 le~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 327 LEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred cCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 2244555555554332 34444332110 000 011112111110 111 11 1112222355566665
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEe-CCCCEEEEEEcCCeEEEEeCC
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
.+. ..+.+.+||..+++.++++.... ++..++.. -++.-++..-.|..++||..+
T Consensus 406 ~gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 406 VGD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ecC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 543 37899999999999999988752 56555543 344444444445678887654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00031 Score=82.84 Aligned_cols=243 Identities=10% Similarity=0.078 Sum_probs=145.3
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
...|.++.|-.++.-++.+..+|.|.+-|.++.... ....-...|.+++|+||++ .++..+.++++.+-+.+-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSPDEE--LLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecCCCc--EEEEEeCCcEEEEEecccc
Confidence 468999999999999999999999999988875432 2334567899999999999 6777777778777554433
Q ss_pred eEEEeeCC-----CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 486 KLFNFEGH-----EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 486 ~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
++..-.-+ .+....+-|-... .=+-|+ .|.....+....+...........=+++.|--||.++++.....
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKE---TQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred chhccccccccccccccceecccccc---eeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 33221111 1111222221110 011111 11111111100000000001112335789999999998855433
Q ss_pred CCC-CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE---cCCeEEEEeCCC---CeEEEEeecCCCCCCcc
Q 001343 561 DGD-SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDN---VNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 561 ~~~-~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~ 633 (1096)
..+ ..|++||-+ |.+-.+-... ...-.+++|-|.|..+++.. .|+.|.+|..+. |+....... ....|.
T Consensus 218 ~~~~RkirV~drE-g~Lns~se~~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~--de~~ve 293 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTSEPV-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPL--DEKEVE 293 (1265)
T ss_pred cCCceeEEEeccc-chhhcccCcc-cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcc--cccchh
Confidence 334 899999977 4433222222 22445689999999988854 566899998654 222222222 222589
Q ss_pred EEEEeCCCCEEEE---EECCCcEEEEEcCCCc
Q 001343 634 RLRFSKEGNLLAV---TTADNGFKILANAIGL 662 (1096)
Q Consensus 634 ~~~~s~~~~~l~~---~~~dg~i~iwd~~~~~ 662 (1096)
.++|+.++..||+ ......|++|-..+..
T Consensus 294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 294 ELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 9999999999998 4445559999987763
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00035 Score=79.30 Aligned_cols=202 Identities=16% Similarity=0.237 Sum_probs=128.5
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc-----EEEEE-
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-----IKVWE- 481 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~-----i~iwd- 481 (1096)
.|. +|++.+..+|.|+.+|.|.+.+-.- +.++ .++.+...|...-+.-+++. +|++.+.|+. ++|||
T Consensus 27 ~is--c~~s~~~~vvigt~~G~V~~Ln~s~-~~~~---~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AIS--CCSSSTGSVVIGTADGRVVILNSSF-QLIR---GFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred cee--EEcCCCceEEEeeccccEEEecccc-eeee---hheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecc
Confidence 444 4678899999999999988876332 1112 46666666433344444433 7888777754 89999
Q ss_pred c---CCc---eEE--EeeC-----CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC---CCCeeeEE-eCCCCcEEEE
Q 001343 482 L---SGR---KLF--NFEG-----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD---TMGSRVDY-DAPGHWCTTM 544 (1096)
Q Consensus 482 ~---~~~---~~~--~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~-~~~~~~i~~l 544 (1096)
. .++ ++. .+.. ...++.+++++. +-..+++|-.+|.|..+.-+ .......+ .....+|+.+
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~--~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL 177 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE--DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL 177 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc--cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee
Confidence 2 122 231 1222 245678888865 45789999999999988422 11122222 2334589999
Q ss_pred EEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE-EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
++..+++.++.+.+ ...|.+|.+....+... +..+ +....|..+++....+++++. ..+++|+.+...+-..+
T Consensus 178 ~~~~d~~s~lFv~T----t~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 178 ALRSDGKSVLFVAT----TEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAF 251 (933)
T ss_pred EEecCCceeEEEEe----cceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeee
Confidence 99999988443333 66888998884443333 4444 447888888876664666554 47999998865555555
Q ss_pred e
Q 001343 624 D 624 (1096)
Q Consensus 624 ~ 624 (1096)
.
T Consensus 252 ~ 252 (933)
T KOG2114|consen 252 E 252 (933)
T ss_pred c
Confidence 4
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00033 Score=77.67 Aligned_cols=146 Identities=15% Similarity=0.140 Sum_probs=83.2
Q ss_pred cCCCeeeeeecCCCc-EEEEec--C-C--eEEEEEcccceEEEeec----CCCCCeeEEEEe-cCCCcEEEEeeCCCeEE
Q 001343 830 LEEAVPCIALSKNDS-YVMSAT--G-G--KISLFNMMTFKVMTTFM----SPPPASTFLAFH-PQDNNIIAIGTEDSTIH 898 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~-~la~~~--d-g--~v~iwd~~~~~~~~~~~----~h~~~i~~l~~s-~~d~~~l~s~~~dg~i~ 898 (1096)
...-+..+.|+++++ +++.-. + . .+.++|..++.+...+. +--..-....|. ++++.+|.....||--+
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 355688899999998 444333 2 2 27777887765433222 111223356665 54666777777888777
Q ss_pred EEeeccceeeeeeccccccccceeeecCCCCCCCCCce-EEEecCCcEEEE-Ee-----cceEEEEEcc-cceecccccc
Q 001343 899 IYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTR-VQFNADQVRMLV-VH-----ETQLAIYDAS-KMERIRQWTP 970 (1096)
Q Consensus 899 iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~-v~fs~dg~~l~~-~~-----d~~i~iwd~~-~~~~~~~~~~ 970 (1096)
||-+.... ....+.-.|.- .|.. +.+++++..+.. +. ...|...++. .++ +..+..
T Consensus 262 ly~~~~~~-------------~~~~~lT~G~~--~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~LT~ 325 (353)
T PF00930_consen 262 LYLYDLDG-------------GKPRQLTSGDW--EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCLTC 325 (353)
T ss_dssp EEEEETTS-------------SEEEESS-SSS---EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEESST
T ss_pred EEEEcccc-------------cceeccccCce--eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEeccC
Confidence 77665433 11223333332 4544 678888887776 43 3356666777 444 344443
Q ss_pred CCCCCCCceEEEEeeCCcEEEEEe
Q 001343 971 QDALSAPISCAVYSCNSQLVFATF 994 (1096)
Q Consensus 971 ~~~~~~~i~~l~~s~dg~~la~~~ 994 (1096)
. ...-..+.|||+|++++...
T Consensus 326 ~---~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 326 E---DGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp T---SSTTEEEEE-TTSSEEEEEE
T ss_pred C---CCCceEEEECCCCCEEEEEE
Confidence 2 11126999999999977544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00062 Score=75.04 Aligned_cols=295 Identities=14% Similarity=0.145 Sum_probs=141.4
Q ss_pred cEEEEEEecCCceEEEeecCCeEEEeeccCCccCC-CCceee-----------ecCccccc--------cCccccccccc
Q 001343 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP-SGKATA-----------SAVPQHWL--------PSSGLLMANDV 825 (1096)
Q Consensus 766 ~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~-~g~~~~-----------~~~i~~w~--------~~~~~~~~~~~ 825 (1096)
.|+.+.|+++...|+++...|.|-+|++..+.... ....-. ...-.+-| +..|..-...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57899999998889999999999999997764432 000000 00111111 11222111122
Q ss_pred cCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEe--ecC------CCCCeeEEEEec----CCC---cEEE
Q 001343 826 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTT--FMS------PPPASTFLAFHP----QDN---NIIA 889 (1096)
Q Consensus 826 ~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~--~~~------h~~~i~~l~~s~----~d~---~~l~ 889 (1096)
.. ..+.|++++.|.=| ++|.|. +|.+.|.|++....+.. +.. ....++++.|+- +|+ -.|+
T Consensus 83 ~~--~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22 47899999998554 889999 69999999988776654 222 234688888862 133 4788
Q ss_pred EeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEE-EecC---------------------CcEEE
Q 001343 890 IGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ-FNAD---------------------QVRML 947 (1096)
Q Consensus 890 s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~-fs~d---------------------g~~l~ 947 (1096)
+|+..|.+.+|.+.-...--|....... ...+.. .+..+. |+.+ ..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~--------~~~~~~-~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGA--------TTNHDS-PILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEE--------E--SS-----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeec--------cccCCC-ceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 9999999999998632101122211111 011111 222222 2111 11555
Q ss_pred EEecceEEEEEcccceeccccccCCCCCCCceEEEEe-----eCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCC
Q 001343 948 VVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS-----CNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS 1022 (1096)
Q Consensus 948 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s-----~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1022 (1096)
++.+..++++...+.+..+..... .-....+.+- ..+..|++-..+|.|++|.+...+.+....... .-
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~~---~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~---~~ 304 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFDD---PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP---PL 304 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-----
T ss_pred EEcccceEEEeCCCCcccceeecc---ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCC---cc
Confidence 578999999999888776655422 2233344552 356678888999999999999988665544211 11
Q ss_pred ccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCCC------ccccCCCCC-CCCCCCCCCCCC
Q 001343 1023 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG------KWGVSPPVD-NGILNSRTTSSS 1085 (1096)
Q Consensus 1023 ~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~~------~~~~~~~~~-~~~~~~~~~~~~ 1085 (1096)
+...+. ...+++ +|+.++-.+. ..+.++.+-.... ....+..|+ +-.++++|+.++
T Consensus 305 ---d~~~~~--~ssis~-~Gdi~~~~gp-sE~~l~sv~~~~~~~~~~~~~~~d~L~np~~~ip~rP~~s~ 367 (395)
T PF08596_consen 305 ---DSRRLS--SSSISR-NGDIFYWTGP-SEIQLFSVWGEGRTGSSLLAPPTDTLYNPNLIIPPRPTISN 367 (395)
T ss_dssp ----HHHHT--T-EE-T-TS-EEEE-SS-SEEEEEEEES--------------B---TT----------T
T ss_pred ---cccccc--ccEECC-CCCEEEEeCc-ccEEEEEEEccCCccccccCCCCCeEECCCCCCCCcCccch
Confidence 222333 256777 8887766543 3444444433221 222233443 334666666443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00083 Score=75.88 Aligned_cols=283 Identities=12% Similarity=0.050 Sum_probs=154.0
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeecccc------eeecccccCcccccccc-cc--CCCCEEEEEEcC-----CCCEEEE
Q 001343 358 TLLLVGSSNGEITLWELAMRDRLVSKPF------KIWDMAACSLPFQASIF-KD--VPISVSRVAWSP-----DGNYVGV 423 (1096)
Q Consensus 358 ~llasg~~dg~I~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~--h~~~V~~l~~sp-----d~~~l~s 423 (1096)
|.+.||+..|.|+|+-+-+++.+...++ .-|-+...+........ .+ ..+......+|- ||+||.+
T Consensus 67 y~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fi 146 (635)
T PRK02888 67 YGFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFI 146 (635)
T ss_pred EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEE
Confidence 4577899999999999999998865221 12222222221111000 00 011122222222 7889988
Q ss_pred EEC-CCeEEEEEccCCCccccceeec-------------ccccCEEE-----EEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 424 AFT-KHLIQLYSYAGSNDLRQHSQID-------------AHVGAVND-----LAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 424 ~~~-dg~i~vwd~~~~~~~~~~~~l~-------------~h~~~v~~-----l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
-.. +..|-..+++.-++-+.+ ++. .+++.|.+ +=++|||+. +..+.-..+.+.+.| .+
T Consensus 147 ndk~n~Rvari~l~~~~~~~i~-~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~-l~~~~ey~~~vSvID~et 224 (635)
T PRK02888 147 NDKANTRVARIRLDVMKCDKIT-ELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKD-LDDPKKYRSLFTAVDAET 224 (635)
T ss_pred ecCCCcceEEEECccEeeceeE-eCCCccCccccCccccCCccEEEeCcccccccCCCCCE-eecccceeEEEEEEECcc
Confidence 764 445555555443332211 110 12222221 223455552 222333345666667 55
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC----CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
.+...++.--. ....+.+++ +|.++++.+.+ +++..-+.........+.... + -.+.++|++....
T Consensus 225 meV~~qV~Vdg-npd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V~--- 294 (635)
T PRK02888 225 MEVAWQVMVDG-NLDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTIG--- 294 (635)
T ss_pred ceEEEEEEeCC-CcccceECC--CCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEEC---
Confidence 45544443222 234445544 56677666532 222222222221111111110 0 1334678877653
Q ss_pred cCCCCeEEEEeCCC-----CeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeE------------EE
Q 001343 560 KDGDSFLVEWNESE-----GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI------------LT 621 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------------~~ 621 (1096)
++.|.+.|..+ .+.+..+.... ....+.++|||+++++++ .+.++.|+|+.+.+. ..
T Consensus 295 ---gn~V~VID~~t~~~~~~~v~~yIPVGK--sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 295 ---GSKVPVVDGRKAANAGSALTRYVPVPK--NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred ---CCEEEEEECCccccCCcceEEEEECCC--CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 66899999988 45555555433 456689999999988866 588999999987542 33
Q ss_pred EeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
..... . .....+|.++|+...+-.-|..|..|++..
T Consensus 370 evevG--l-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 370 EPELG--L-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eeccC--C-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33331 1 346789999999888889999999999876
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.11 E-value=5e-06 Score=50.99 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHhh
Q 001343 6 RELVFLILQFLEEEKFKESVHKLEKES 32 (1096)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Es 32 (1096)
+++++||.+||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999997
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00011 Score=83.37 Aligned_cols=184 Identities=13% Similarity=0.128 Sum_probs=137.7
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEE
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 545 (1096)
.++.|+-...+..+| .+++..+...-..+.|.-++. ++.++.+|...|+|.+-|.++.+.+.++..|.+.|..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 577788788888889 666666555544445666653 568999999999999999999999999999999887765
Q ss_pred EcCCCCEEEEEeeccC-----CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCC-Ce
Q 001343 546 YSADGSRLFSCGTSKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDN-VN 618 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~ 618 (1096)
-.|+.|++||.+.. -|..|++||++..+.+.-+.-+.+. ..+.|.|.- ..+++++..|...+-|..+ +.
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--hhhhhcccccceEEEEecccceeeccccccCC
Confidence 46889999987543 3668899999988777666555442 336777753 5678888899999999432 11
Q ss_pred E-EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 619 I-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 619 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
+ ......+.....+..+.+++++..++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 1 222222222335899999999999999999999999973
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0012 Score=73.82 Aligned_cols=225 Identities=12% Similarity=0.093 Sum_probs=121.3
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.........+.++|+|++++++ .||.-.|+.... .+. ...+.-...+|.+.++ +|+-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~---~r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA---WRN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT---TEE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC---Ccc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 33445567899999999999995 467777777322 221 1234556788988554 67777789999986
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.+.+....+... ..+..+.. |.+|...+. +.|.+||+.+++.+..+... .|..+.|+++|.+++..+
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE----
T ss_pred cCccccceEEcCC-cccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe---
Confidence 544443344321 23444431 456655554 48999999999888877654 389999999999999887
Q ss_pred CCCCeEEEEeCCCC-----------eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC
Q 001343 561 DGDSFLVEWNESEG-----------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
+..+++++.... .....+..... .|.+.+|..+ .++..+.. .++. +-.|+.-..... ..
T Consensus 164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~-~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~l-d~- 233 (443)
T PF04053_consen 164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISE-RIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHL-DK- 233 (443)
T ss_dssp --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S---SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE--SS-
T ss_pred --CCeEEEEEecchhcccccccCchhceEEEEEecc-eeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEc-CC-
Confidence 557777765433 01122211112 5666778655 55555444 6665 334433222222 22
Q ss_pred CCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++.-+.+.+..+.+.....|+.+..+.+...
T Consensus 234 -~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 234 -PLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ---EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred -ceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 5677888887788999999999998877543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0001 Score=83.80 Aligned_cols=182 Identities=8% Similarity=0.074 Sum_probs=128.5
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
++..++.|+....+..+|+.+.+..+. ..-..+.|+-|+. +++ .+.+|...|+|.+-| .+.+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 455677788778888999998776653 2223334666654 456 899999999999999 89999999999999
Q ss_pred CeEEEEeeecCCCcEEEEEEC---------CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC-CEEEEEeeccCCCCe
Q 001343 496 PVYSICPHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSF 565 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~ 565 (1096)
.|..+.. .|+.|+++|. |..|++||++....+..+..+-++ .-+.|.|.- ..+++++. .|.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9999876 4568888875 456899999987766544444332 345555643 34555554 777
Q ss_pred EEEEeC---CCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 566 LVEWNE---SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 566 i~iwd~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
..+-|. .+...-.......+..+..+.++++++.++.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 777773 2221111222222335888999999999999999999999973
|
|
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.8e-06 Score=64.08 Aligned_cols=53 Identities=38% Similarity=0.547 Sum_probs=42.7
Q ss_pred cHHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHHHHhhccCCH
Q 001343 37 NMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDK 90 (1096)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lell~~~~~ 90 (1096)
++..++++|+.|+|+.|+..+...........+ .+.|.|++|+|+|||+.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 367899999999999999999887443322223 39999999999999998764
|
Alpha-helical motif of unknown function. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.003 Score=69.78 Aligned_cols=251 Identities=15% Similarity=0.205 Sum_probs=133.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeee------------------cccceeecccccCccc------cccc
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV------------------SKPFKIWDMAACSLPF------QASI 401 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~------------------~~~~~~~~~~~~~~~~------~~~~ 401 (1096)
.|+++.|.++..- ||+|...|.|.||.+...+.-. ...-++-|+.....+- +..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999999774 8899999999999987654321 0122233333222211 1224
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecc------cccCEEEEEEec-----CC-CcEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAY-----PN-KLLCVV 469 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~------h~~~v~~l~~s~-----d~-~~~~l~ 469 (1096)
+....+.|++++.| |=-++|+|+.+|.+.|.|+.....+... .+.. ....|+++.|+- |+ ....++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55568999999997 6669999999999999999776655431 1222 345788888862 22 124788
Q ss_pred EEeCCCcEEEEE-c-C--CceE----EEeeCCCCCeEEEEeeecCC-------------------CcEEEEEECCCeEEE
Q 001343 470 TCGDDKLIKVWE-L-S--GRKL----FNFEGHEAPVYSICPHHKEN-------------------IQFIFSTAIDGKIKA 522 (1096)
Q Consensus 470 s~s~d~~i~iwd-~-~--~~~~----~~~~~~~~~v~~~~~~~~~~-------------------~~~l~s~~~dg~i~i 522 (1096)
.|...|.+.+|. . . +.-. .....+.++|..+..-...+ -+-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 899999999998 3 2 2211 11234667777666321111 022445555788999
Q ss_pred EEcCCCCeeeEEeCCCCcEEEEEEc-----CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc---cceEEEEEe
Q 001343 523 WLYDTMGSRVDYDAPGHWCTTMLYS-----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFD 594 (1096)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~l~~s-----~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~ 594 (1096)
+..-+.+...+.......+..+.+- ..+..|++... +|.++++.+..-+.+..+..... ......+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655544222234444452 24445555554 99999999999888877765421 122234556
Q ss_pred CCCCEEEEE
Q 001343 595 TTQNHFLAV 603 (1096)
Q Consensus 595 ~~~~~l~~~ 603 (1096)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666644444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0055 Score=64.09 Aligned_cols=269 Identities=16% Similarity=0.200 Sum_probs=158.0
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC----------CCeEEEEEcc
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT----------KHLIQLYSYA 436 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~----------dg~i~vwd~~ 436 (1096)
+.|.|.|..+++.+... ..+-.-.+..|||++.++++.. .-.|.+||..
T Consensus 17 ~rv~viD~d~~k~lGmi---------------------~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI---------------------DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEEEEEE---------------------EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEe---------------------ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 47899998888866431 1122334678999999887531 2368999998
Q ss_pred CCCccccceeecc-ccc----CEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcE
Q 001343 437 GSNDLRQHSQIDA-HVG----AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQF 510 (1096)
Q Consensus 437 ~~~~~~~~~~l~~-h~~----~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 510 (1096)
+-.....+ .+.. |.. ....++++.|++.+++.=.+--.+|.|-| ..++.+..+.-. .+..+ .|.++ .-
T Consensus 76 TL~~~~EI-~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i--yP~~~-~~ 149 (342)
T PF06433_consen 76 TLSPTGEI-EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI--YPSGN-RG 149 (342)
T ss_dssp TTEEEEEE-EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE--EEEET-TE
T ss_pred cCcccceE-ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE--EecCC-Cc
Confidence 86544432 2322 111 22346788888865555566677888889 666666655421 22232 34444 35
Q ss_pred EEEEECCCeEEEEEcCCCCeeeE-----EeCCCCcE-EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee--eEEEcC
Q 001343 511 IFSTAIDGKIKAWLYDTMGSRVD-----YDAPGHWC-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAG 582 (1096)
Q Consensus 511 l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i-~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~ 582 (1096)
+.+-|.||.+.-..++....... +.....++ ..-++...+..++..+. +|.|+-.|+..... ...+..
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEETTSSEEEEEEEES
T ss_pred eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEeccCCcccccCcccc
Confidence 78999999999998885443321 11112222 23344444444443443 88888888765542 222221
Q ss_pred cC------c---cceEEEEEeCCCCEEEEEE--------cCC--eEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC-
Q 001343 583 FR------K---KSNGVVQFDTTQNHFLAVG--------EDS--QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN- 642 (1096)
Q Consensus 583 ~~------~---~~i~~~~~~~~~~~l~~~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 642 (1096)
.. + .....+++++..+.|++.- .|+ .|.++|+.+++.+..+.... .+.+|..+.+.+
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKP 302 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCc
Confidence 10 0 1223377887776666632 122 48888999999999998643 578999999664
Q ss_pred EEEEEE-CCCcEEEEEcCCCccccccccC
Q 001343 643 LLAVTT-ADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 643 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
+|++.+ .++.+.+||..++ +.++.+..
T Consensus 303 ~L~~~~~~~~~l~v~D~~tG-k~~~~~~~ 330 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATG-KLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEETTT---EEEEE--
T ss_pred EEEEEcCCCCeEEEEeCcCC-cEEeehhc
Confidence 665544 5789999999998 55555543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.4e-05 Score=53.45 Aligned_cols=32 Identities=38% Similarity=0.546 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHHcChHHHHHHHHHhhCCC
Q 001343 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (1096)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1096)
.+.++.++|+|||...||..|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999975
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0079 Score=69.77 Aligned_cols=274 Identities=14% Similarity=0.092 Sum_probs=156.0
Q ss_pred EEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEE--EEEEcCCCCEEEEEECCCeEEEEEccC
Q 001343 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS--RVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 360 lasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~l~~spd~~~l~s~~~dg~i~vwd~~~ 437 (1096)
+..++.++.|.-.|..+|+.+-+.... .. ...+...+. .++.. ++..++.++.++.|.-+|.++
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~~-------~~------~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDPK-------LP------ADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCCC-------CC------ccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC
Confidence 555677899999999999876432111 00 000000010 01111 236777888899999999999
Q ss_pred CCccccceeecccc---cCEE-EEEEecCCCcEEEEEEe---------CCCcEEEEE-cCCceEEEeeCCCCC-------
Q 001343 438 SNDLRQHSQIDAHV---GAVN-DLAFAYPNKLLCVVTCG---------DDKLIKVWE-LSGRKLFNFEGHEAP------- 496 (1096)
Q Consensus 438 ~~~~~~~~~l~~h~---~~v~-~l~~s~d~~~~~l~s~s---------~d~~i~iwd-~~~~~~~~~~~~~~~------- 496 (1096)
|+.+-... +..+. ..+. ...+. + . .++.++ .++.+...| .+|+.+..+......
T Consensus 130 G~~~W~~~-~~~~~~~~~~i~ssP~v~-~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 130 GKQVWKFG-NNDQVPPGYTMTGAPTIV-K-K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred CCEeeeec-CCCCcCcceEecCCCEEE-C-C--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 98764321 22210 0011 11222 2 2 344443 467899999 899988776542110
Q ss_pred -------------eE-EEEeeecCCCcEEEEEECCC------------------eEEEEEcCCCCeeeEEeCCCCcEE--
Q 001343 497 -------------VY-SICPHHKENIQFIFSTAIDG------------------KIKAWLYDTMGSRVDYDAPGHWCT-- 542 (1096)
Q Consensus 497 -------------v~-~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~-- 542 (1096)
+. +.++. ..+..++.++.++ .|.-+|..+++....+........
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d--~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYD--PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCcceecCCCCCccCCeeEe--CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 11 11221 1235677777665 788899999999887653322111
Q ss_pred ----EEEEc----CCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE--------
Q 001343 543 ----TMLYS----ADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-------- 603 (1096)
Q Consensus 543 ----~l~~s----~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-------- 603 (1096)
...+. -++. .+++++. ++.++..|.++|+.+-...... ..+..+| ..++.+
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~~----~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAPK----NGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEECC----CceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEccccccccC
Confidence 01111 2333 4555554 8899999999999887654321 1122333 333332
Q ss_pred ----------EcCCeEEEEeCCCCeEEEEeecCCCC------CCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccc
Q 001343 604 ----------GEDSQIKFWDMDNVNILTSTDAEGGL------PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1096)
Q Consensus 604 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 664 (1096)
..+|.+.-.|..+|+.+......... .....-...-.+..+++++.||.|+.+|..+|...
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 24678999999999988877654110 01111111125578889999999999999999433
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.026 Score=60.40 Aligned_cols=278 Identities=14% Similarity=0.104 Sum_probs=133.6
Q ss_pred EEcCCCCcEEEEEeCCC--eEEEEecCCCCeeecccceeecccccCccccccccccCC-CCEEEEEEcCCCCEEEEEECC
Q 001343 351 DFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTK 427 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~l~s~~~d 427 (1096)
+|.+||++||..+..|| .+.+-|+.+++... |.... .......++|+++.++-....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 57899998888877676 56666777776543 22221 222246677988988777666
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEe--cCCCcEEEEEEeC----------------------CCcEEEEE-c
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA--YPNKLLCVVTCGD----------------------DKLIKVWE-L 482 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s--~d~~~~~l~s~s~----------------------d~~i~iwd-~ 482 (1096)
..|+-.|+++.+... .+....+.+-...|. .|+. .++..-. ...|.--| .
T Consensus 102 ~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 789889998865432 233345555445664 3444 3332211 11233334 3
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC---CC-eEEEEEcCCCCeee-EEeC--CCCcEEEEEEcCCCCEEEE
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DG-KIKAWLYDTMGSRV-DYDA--PGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg-~i~iwd~~~~~~~~-~~~~--~~~~i~~l~~s~~~~~l~~ 555 (1096)
+|+. ..+..-...+..+.|+|.. ..+|.-|-+ +. .-|||-+++..... .+.. ....+.-=-|.+||..+.-
T Consensus 177 tG~~-~~v~~~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGER-KVVFEDTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T--E-EEEEEESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCce-eEEEecCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 3333 2332244556677787753 344444432 22 23778766443322 2211 2224555678999998876
Q ss_pred Eee-ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC----------------CeEEEEeCCCCe
Q 001343 556 CGT-SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----------------SQIKFWDMDNVN 618 (1096)
Q Consensus 556 ~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~ 618 (1096)
-+. .+..+..|.-+|+.+++........ .......+++|.+++-=+.| .-|+++++..+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 443 2233567888899888665433321 23335567888877653332 256778887766
Q ss_pred EEEEeecCC--------CCCCccEEEEeCCCCEEEEEE-CCCcEEEEEc
Q 001343 619 ILTSTDAEG--------GLPNLPRLRFSKEGNLLAVTT-ADNGFKILAN 658 (1096)
Q Consensus 619 ~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~ 658 (1096)
......... ....=....|+|||+.++-.+ ..|...||-+
T Consensus 332 ~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 543222110 000124679999998776655 4677666644
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00014 Score=79.69 Aligned_cols=80 Identities=26% Similarity=0.374 Sum_probs=66.7
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 337 ~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
.+..+..+..|.|++++|+.+ .|+.|..||+|++||..++.... ..+.-..+.++|+|
T Consensus 252 svtsipL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~~---------------------~ka~~~P~~iaWHp 309 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVTLL---------------------AKAEFIPTLIAWHP 309 (545)
T ss_pred EEEEEecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCeeee---------------------eeecccceEEEEcC
Confidence 345567999999999999999 58899999999999987764332 22345688999999
Q ss_pred CCCEEEEEECCCeEEEEEccCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
+|..+++|+..|.+.+||+.-+
T Consensus 310 ~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 310 DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999998643
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=76.59 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHhhCCCcc----------HHHHHHHHhccCHHHHHHHHcCCC-CCCCcccchhhH
Q 001343 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----------MKYFEEKVQAGDWDEVEKYLSGFT-KVDDNRYSMKIF 73 (1096)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~l~-~~~~~~~~~~~~ 73 (1096)
.+.+..+|..++++.|..+.+..|-+|||...+ +..+-+++..|+-.-|++.+..-. .+.+. ...+.
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE 193 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLE 193 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHH
Confidence 344689999999999999999999999998753 678899999999999999986531 11111 12389
Q ss_pred HHHHHHHHHHhhccCCHH--HHHHHHHhhcccccccCHHHHHHHHHHh
Q 001343 74 FEIRKQKYLEALDRQDKA--KAVDILVNDLKVFSTFNEELFKEITQLL 119 (1096)
Q Consensus 74 ~~l~~~~~lell~~~~~~--~A~~~l~~~l~~~~~~~~~~~~~l~~~~ 119 (1096)
|.|..+.|++++..|... +|+.+.|+.++||...+..+++.|-..+
T Consensus 194 ~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 194 FKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 999999999999999888 9999999999999665555566554444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.021 Score=65.27 Aligned_cols=249 Identities=13% Similarity=0.083 Sum_probs=135.3
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC----eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.+..+++||||++++++-+..| .|+|+|+.+|+.+.. . +... .-..+.|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~~--~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IENP--KFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEEE--ESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------cccc--ccceEEEeCCCCEE
Confidence 3457889999996554545555 599999999977642 0 1111 11239999999887
Q ss_pred EEEECCC-----------eEEEEEccCCCccccceeecccccC--EEEEEEecCCCcEEEEEEeCCC---cEEEEE-cCC
Q 001343 422 GVAFTKH-----------LIQLYSYAGSNDLRQHSQIDAHVGA--VNDLAFAYPNKLLCVVTCGDDK---LIKVWE-LSG 484 (1096)
Q Consensus 422 ~s~~~dg-----------~i~vwd~~~~~~~~~~~~l~~h~~~--v~~l~~s~d~~~~~l~s~s~d~---~i~iwd-~~~ 484 (1096)
+....+. .|+.|.+.++..-.. ..+...... ...+..++|++. +++...... .+.+.| ..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~-lvfe~~~~~~~~~~~~~s~d~~~-l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE-LVFEEPDEPFWFVSVSRSKDGRY-LFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-E-EEEC-TTCTTSEEEEEE-TTSSE-EEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCe-eEEeecCCCcEEEEEEecCcccE-EEEEEEccccCCeEEEEecccc
Confidence 7665332 377777766543211 123333332 678899999995 333333333 467777 432
Q ss_pred ----ceEEEeeCCCCCeEEEEeeecCCCcEEEEE---ECCCeEEEEEcCCCCe---eeEEeCCCC--cEEEEEEcCCCCE
Q 001343 485 ----RKLFNFEGHEAPVYSICPHHKENIQFIFST---AIDGKIKAWLYDTMGS---RVDYDAPGH--WCTTMLYSADGSR 552 (1096)
Q Consensus 485 ----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~l~~s~~~~~ 552 (1096)
.....+......+....-+. ++.+++.. ...+.|...++..... ...+..+.. .+..+. ..+.+
T Consensus 263 ~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~ 338 (414)
T PF02897_consen 263 GSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDY 338 (414)
T ss_dssp TTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTE
T ss_pred CCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCE
Confidence 23344443443443333222 22344433 2346777777777663 224444444 344444 44556
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEE--EE--cCCeEEEEeCCCCeEEE
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VG--EDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~~ 621 (1096)
|+.... .++...|+++++..+.....+.......+..+...++++.+.. .+ .-++++.||+.+++...
T Consensus 339 Lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 339 LVLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 665543 3346689999998555555555544435555555555554433 22 34678888998876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0033 Score=70.31 Aligned_cols=81 Identities=11% Similarity=0.048 Sum_probs=59.3
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+.+.....+.--+++..+.+++.|+.-|.+++|+...++....-... ....+..+..+++..++|.|+..|.|.++.+.
T Consensus 28 ~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 28 QPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred ccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 33433335565677888999999999999999998877655433322 23356677888888999999999999998775
Q ss_pred CC
Q 001343 660 IG 661 (1096)
Q Consensus 660 ~~ 661 (1096)
..
T Consensus 107 ~~ 108 (726)
T KOG3621|consen 107 KE 108 (726)
T ss_pred cc
Confidence 43
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0011 Score=73.08 Aligned_cols=124 Identities=14% Similarity=0.132 Sum_probs=87.1
Q ss_pred cceEEeecCCCceEEEEEcCCCCcEEEEE----eCCCe----EEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVG----SSNGE----ITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 335 ~~~~~~l~h~~~V~~v~fsp~g~~llasg----~~dg~----I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
-+++.....+....++.||-...+.+.|- +.+|. -.+|++..++.... .+ .--...
T Consensus 196 lEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv---sv-------------tsipL~ 259 (545)
T PF11768_consen 196 LEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV---SV-------------TSIPLP 259 (545)
T ss_pred EEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE---EE-------------EEEecC
Confidence 34444455556668888887554444432 23443 34677665443221 11 112367
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.|.|++++|+.+.|+.|+.||+|.+||...+... +..+.-.++.++|+|+|. ++++|+..|.+.+||
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFD 327 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEE
Confidence 78999999999999999999999999998775322 223455678999999999 999999999999999
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.034 Score=59.54 Aligned_cols=227 Identities=11% Similarity=0.039 Sum_probs=108.5
Q ss_pred EEcCCCCEEEEEEC-C--CeEEEEEccCCCccccceeecccc-cCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE
Q 001343 413 AWSPDGNYVGVAFT-K--HLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 413 ~~spd~~~l~s~~~-d--g~i~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 487 (1096)
+|.+||+.|+.++. | ..+.+.|+.+++..+ |.... .......++++++ .++-......++--| .+.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--EE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcEE
Confidence 67889987776654 4 467777888876543 33332 2223566778887 555555567888888 565554
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEEC----------------------CCeEEEEEcCCCCeeeEEeCCCCcEEEEE
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAI----------------------DGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 545 (1096)
..+......+-...|....++..++-.-. ...|..-|+.+++....+. ....+.-+.
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~ 194 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQ 194 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEE
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcc
Confidence 45555555555556655556555433211 1234445666655444443 455788899
Q ss_pred EcCCCCEEEEEeeccCCCC-eEEEEeCC-CCeeeEEEcCcC-ccceEEEEEeCCCCEEEEEE-----cCCeEEEEeCCCC
Q 001343 546 YSADGSRLFSCGTSKDGDS-FLVEWNES-EGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVG-----EDSQIKFWDMDNV 617 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~-~i~iwd~~-~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~ 617 (1096)
|+|....++.-+-.+..+. .-+||-+. .+...+.+..+. ...+..=.|.|+|..|..-+ .+..|.-+|..++
T Consensus 195 fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 195 FSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp EETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred cCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 9996655554433221122 12445443 233333333222 22444457899998776533 3446778888887
Q ss_pred eEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 618 NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 618 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
+........ ....+..++||.+++-=+.|
T Consensus 275 ~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 275 ERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 665433332 33455667899888765554
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=9.5e-06 Score=88.26 Aligned_cols=204 Identities=13% Similarity=0.179 Sum_probs=132.0
Q ss_pred CCceEEEEEcCCCC-cEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEE
Q 001343 344 GSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~-~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l 421 (1096)
...+.|++++-+.+ -++++|..+|.|-+-.+...... ...+..+|....++++|++ |.+.|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 45677887766544 58999999999999887653321 1123566888999999999 67788
Q ss_pred EEEE----CCCeEEEEEccCC--Cccccceeecc-cccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCC
Q 001343 422 GVAF----TKHLIQLYSYAGS--NDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1096)
Q Consensus 422 ~s~~----~dg~i~vwd~~~~--~~~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 494 (1096)
|.|- .|..+.|||+.++ .+.... .+.+ -.....+++|..+.+ ++.+|...+.+.++|....+...-.-.+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnT 195 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNT 195 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhh
Confidence 8773 3568999999886 222111 1222 445667899998888 8889999999999993333322222223
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEE-cCCCCeeeEEeCC-----CCcEEEEEEcCCCCE-EEEEeeccCCCCeEE
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWL-YDTMGSRVDYDAP-----GHWCTTMLYSADGSR-LFSCGTSKDGDSFLV 567 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~-l~~~~~~~~~~~~i~ 567 (1096)
..+..+.+.|- .+.++++-. ||.|.+|| ..+.+.......+ ...+..++|.|...- +++... ..+.|+
T Consensus 196 k~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 34555565552 234665554 99999999 4444333322222 225889999986543 334433 277899
Q ss_pred EEeCC
Q 001343 568 EWNES 572 (1096)
Q Consensus 568 iwd~~ 572 (1096)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 98875
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.016 Score=59.15 Aligned_cols=190 Identities=12% Similarity=0.131 Sum_probs=111.7
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...+..++|+|+.+.|+|+....+.|...+. +|+.+...+ +.+ -+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 4469999999987778999888999988886 477765421 333 356888999888888877
Q ss_pred EECCCeEEEEEccCCCcc---ccce--ee---cccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcC----CceEEEe-
Q 001343 424 AFTKHLIQLYSYAGSNDL---RQHS--QI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS----GRKLFNF- 490 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~---~~~~--~l---~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~----~~~~~~~- 490 (1096)
--.++.+.++++...... .... .+ ..++..+-.++|.+.++ .|+.+-...-..++... +..+...
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~--~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN--RLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT--EEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC--EEEEEeCCCChhhEEEccccCccceeecc
Confidence 666899999998443211 1101 11 13556799999999988 45556666666677622 2222111
Q ss_pred -------eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC---------CcEEEEEEcCCCCEEE
Q 001343 491 -------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLF 554 (1096)
Q Consensus 491 -------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~~~~l~ 554 (1096)
......+.++.++|. .+++++.......|..+| ..++.+..+.... .+.-.|+|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 123445788899876 567888888889999998 4455544444333 2578899999987666
Q ss_pred EE
Q 001343 555 SC 556 (1096)
Q Consensus 555 ~~ 556 (1096)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 54
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.016 Score=67.30 Aligned_cols=245 Identities=11% Similarity=0.042 Sum_probs=139.5
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CCCEEEEEE---------CC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAF---------TK 427 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~~---------~d 427 (1096)
.++.++.++.|.-+|..+|+.+-.... ..+...-..+.-+| .+..++.++ .+
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~-----------------~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~ 174 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGN-----------------NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVR 174 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecC-----------------CCCcCcceEecCCCEEECCEEEEeccccccccCCCC
Confidence 366778899999999999998743211 01100000011111 123444443 36
Q ss_pred CeEEEEEccCCCccccceeecc----------------cc-cCEE-EEEEecCCCcEEEEEEeCCC--------------
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDA----------------HV-GAVN-DLAFAYPNKLLCVVTCGDDK-------------- 475 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~----------------h~-~~v~-~l~~s~d~~~~~l~s~s~d~-------------- 475 (1096)
+.+.-+|..+|+.+-....... +. ..|+ ..++.+.+. .++.++.++
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCC
Confidence 7888889988876543211100 00 1111 234444455 566666554
Q ss_pred ----cEEEEE-cCCceEEEeeCCCCCeE------EEEeee--cCCC---cEEEEEECCCeEEEEEcCCCCeeeEEeCCCC
Q 001343 476 ----LIKVWE-LSGRKLFNFEGHEAPVY------SICPHH--KENI---QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539 (1096)
Q Consensus 476 ----~i~iwd-~~~~~~~~~~~~~~~v~------~~~~~~--~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 539 (1096)
.|.-.| .+|+.+..++.-..... ...+.. .-++ ..++.++.+|.+...|.++++.+.......
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~- 331 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE- 331 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-
Confidence 799999 89999877642111111 001110 0122 267888899999999999999887654321
Q ss_pred cEEEEEEcCCCCEEEEEeec--------------cCCCCeEEEEeCCCCeeeEEEcCcCc-------cceEEEEEeCCCC
Q 001343 540 WCTTMLYSADGSRLFSCGTS--------------KDGDSFLVEWNESEGTIKRTYAGFRK-------KSNGVVQFDTTQN 598 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~ 598 (1096)
..++.+| ..++..... ...++.+.-.|..+|+.+-+...... .....-.....+.
T Consensus 332 --~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~ 407 (488)
T cd00216 332 --QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGN 407 (488)
T ss_pred --cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCC
Confidence 1233334 233332110 11257888899999988776654310 0110001112457
Q ss_pred EEEEEEcCCeEEEEeCCCCeEEEEeecCC
Q 001343 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1096)
.+++++.||.|+.+|.++|+.+...+...
T Consensus 408 ~v~~g~~dG~l~ald~~tG~~lW~~~~~~ 436 (488)
T cd00216 408 LVFAGAADGYFRAFDATTGKELWKFRTPS 436 (488)
T ss_pred eEEEECCCCeEEEEECCCCceeeEEECCC
Confidence 88899999999999999999998887643
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.028 Score=56.08 Aligned_cols=265 Identities=14% Similarity=0.114 Sum_probs=142.7
Q ss_pred EEEEeCCCC-EEEEEEcCCe-EEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC-----CcEEEEEcCCCc
Q 001343 590 VVQFDTTQN-HFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIGL 662 (1096)
Q Consensus 590 ~~~~~~~~~-~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 662 (1096)
.++++|.-. -++.+-.-|+ ..++|....+...++........--.=.|||||.+|+..-.| |.|-+||...+.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 367777543 4555555454 678999888777766544332223334799999999877654 789999998887
Q ss_pred cccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCcccee
Q 001343 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1096)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~ 742 (1096)
+..-.+..+.... ..+.+.+||+.+|.....-...- . +... -+=..+..-.+.+.+
T Consensus 152 qrvgE~~t~GiGp-----Hev~lm~DGrtlvvanGGIethp----d-------------fgR~--~lNldsMePSlvlld 207 (366)
T COG3490 152 QRVGEFSTHGIGP-----HEVTLMADGRTLVVANGGIETHP----D-------------FGRT--ELNLDSMEPSLVLLD 207 (366)
T ss_pred ceecccccCCcCc-----ceeEEecCCcEEEEeCCceeccc----c-------------cCcc--ccchhhcCccEEEEe
Confidence 7777777665543 35899999999866543211100 0 0000 000011111222222
Q ss_pred eeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCC-CCceeeecCccccccCcccc
Q 001343 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNP-SGKATASAVPQHWLPSSGLL 820 (1096)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~-~g~~~~~~~i~~w~~~~~~~ 820 (1096)
.. ......+.+++. ..+.-.|+.++..+||. +..++. .|. ..+..| .+.......++..++.....
T Consensus 208 ~a---tG~liekh~Lp~-~l~~lSiRHld~g~dgt-vwfgcQy~G~-------~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 208 AA---TGNLIEKHTLPA-SLRQLSIRHLDIGRDGT-VWFGCQYRGP-------RNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred cc---ccchhhhccCch-hhhhcceeeeeeCCCCc-EEEEEEeeCC-------CccCCcceeeccCCCcCcccCCCHHHH
Confidence 11 022223334441 12566788888888887 444432 111 111100 01111111222223222211
Q ss_pred ccccccCCCcCCCeeeeeecCCCcEEEEec-C-CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEE
Q 001343 821 MANDVAGVNLEEAVPCIALSKNDSYVMSAT-G-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898 (1096)
Q Consensus 821 ~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-d-g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~ 898 (1096)
.. ....|-+++...+..+++..+ . +...+||..+|..+..-.- .....++-.. .-+++.+.+|.+.
T Consensus 276 ~~-------~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~~---~gf~vssg~G~~~ 343 (366)
T COG3490 276 AA-------FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAAK---GGFAVSSGQGRII 343 (366)
T ss_pred HH-------HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccceecc---CceEEecCCceEE
Confidence 11 234567788887777877776 4 6699999999988765421 1222334333 3466667788888
Q ss_pred EEee
Q 001343 899 IYNV 902 (1096)
Q Consensus 899 iw~~ 902 (1096)
++.-
T Consensus 344 ~~s~ 347 (366)
T COG3490 344 FYSR 347 (366)
T ss_pred eccc
Confidence 8743
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.28 Score=57.26 Aligned_cols=111 Identities=11% Similarity=0.039 Sum_probs=67.1
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeEEeCCCC-cEE----------EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCT----------TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~----------~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
..++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.++. ++.+.-.|.++|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 3677777788888888888887776654221 111 1122 1234555554 889999999999998
Q ss_pred EEEcCcCccceEEEEEeC--CCCEEEEEE------cCCeEEEEeCCCCeEEEEeec
Q 001343 578 RTYAGFRKKSNGVVQFDT--TQNHFLAVG------EDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
-.........-..+.-+| .+..++++. .+|.|+-+|..+|+.+.....
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 766532110000011111 133555554 268999999999998877654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.087 Score=59.27 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=63.2
Q ss_pred CCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCC-CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 831 ~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h-~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
.+++..|++||+|++||.-. +|.+.|.+..-.+.+..+.-. ......+.|.- +.-.++.- ...+.+.....
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l~~--~~~l~lvg~~~---- 288 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVLSW--EDELLLVGPDG---- 288 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEEEe--CCEEEEECCCC----
Confidence 46799999999999999888 589988886555555555433 34556777776 33222222 23344433211
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccc
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWT 969 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~ 969 (1096)
..+.|.-++..++...-..++|..-+.-+.++.+.
T Consensus 289 --------------------------~~~~~~~~~~~~l~~E~DG~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 289 --------------------------DSISFWYDGPVILVSEIDGVRIITSTSHEFLQRVP 323 (410)
T ss_pred --------------------------CceEEeccCceEEeccCCceEEEeCCceEEEEECC
Confidence 22445545554444444447777666666655554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0073 Score=67.45 Aligned_cols=203 Identities=15% Similarity=0.095 Sum_probs=118.1
Q ss_pred eeecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCC---CeEEEEecCCCCeeecccceeecccccCcccccccc
Q 001343 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1096)
+|-.|.- +...+.+. -...+..-+|+|+++.+....-.. ..+.++++.+++....
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-------------------- 233 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-------------------- 233 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--------------------
Confidence 5555543 44444444 556788899999999644443222 3599999998876532
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEE-CCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAF-TKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
..-.+.-..-+|||||++|+.+. .|| .|.++|+.++...+ +..-.+.-+.=.|+|||+. ++++.+..|.-.|
T Consensus 234 ~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I 308 (425)
T COG0823 234 LNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQI 308 (425)
T ss_pred eccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcce
Confidence 11222344568999999988654 455 46777777765332 3333333347789999996 3444555565555
Q ss_pred E--EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CCe--EEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 480 W--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 480 w--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
| |.++.....+......-..-.|+| ||.+|+..+. +|. |.+.|+.+..... ..........-.+.++|+.+.
T Consensus 309 ~~~~~~g~~~~riT~~~~~~~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 309 YLYDLEGSQVTRLTFSGGGNSNPVWSP--DGDKIVFESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred EEECCCCCceeEeeccCCCCcCccCCC--CCCEEEEEeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCCceEE
Confidence 5 466665555443333222444544 7777777664 344 5555555444322 222222344566778888877
Q ss_pred EEee
Q 001343 555 SCGT 558 (1096)
Q Consensus 555 ~~~~ 558 (1096)
..+.
T Consensus 386 ~~s~ 389 (425)
T COG0823 386 FSSG 389 (425)
T ss_pred Eecc
Confidence 6553
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.11 Score=53.19 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=110.0
Q ss_pred eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC-CCCeEEEEeeecCCCcEEEEEECCCeEEEEE
Q 001343 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1096)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (1096)
.+.+-...+..++|.|+.+. +++.....+.|...+.+|+.++.+.-. .+..-.+++. +++.++++--.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~t-LfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~--g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGT-LFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL--GNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTE-EEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCe-EEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE--CCCEEEEEEcCCCcEEEEE
Confidence 45566667999999998774 566667778887777889988876533 3456777774 3666666665689999998
Q ss_pred cCCCCe---e---eEEe-----CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC--CCCeee-EEEc-----CcCc
Q 001343 525 YDTMGS---R---VDYD-----APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTIK-RTYA-----GFRK 585 (1096)
Q Consensus 525 ~~~~~~---~---~~~~-----~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~--~~~~~~-~~~~-----~~~~ 585 (1096)
+..... . ..+. ..+..+-.++|++.++.++++-. .....|+-++. ...... .... ...-
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE--~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE--RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE--SSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC--CCChhhEEEccccCccceeecccccccccccee
Confidence 843221 1 1111 23446899999999888887754 11233444443 111111 1111 1111
Q ss_pred cceEEEEEeCCCCEEE-EEEcCCeEEEEeCCCCeEEEEeecCCC-------CCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 586 KSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 586 ~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
..+..++++|....++ ....+..|..+| ..|+.+..+..... ....-.|+|.++|++.+++ .-+.+.+|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 2567789999765554 455778899999 67777776665442 2246789999998665544 44444443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.21 Score=58.28 Aligned_cols=284 Identities=12% Similarity=0.075 Sum_probs=153.4
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
.+++++.++.|.-.|..+|+.+-+.....- ..... .......-..+++ .+..++.++.|+.+.-.|..+|
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-----~~~~~---~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TG 140 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLP-----DDVIP---VMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTG 140 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCC-----ccccc---ccccccccccceE--ECCEEEEEcCCCEEEEEECCCC
Confidence 355667788999999999987744221100 00000 0000000001122 2346777888999999999999
Q ss_pred Cccccceeeccccc--CEEEEEEecCCCcEEEEEEe------CCCcEEEEE-cCCceEEEeeCCCC--------------
Q 001343 439 NDLRQHSQIDAHVG--AVNDLAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFNFEGHEA-------------- 495 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~--~v~~l~~s~d~~~~~l~s~s------~d~~i~iwd-~~~~~~~~~~~~~~-------------- 495 (1096)
+.+-... +..+.. .+++--.--++. ++.+. .+|.|..+| .+|+.+..+..-..
T Consensus 141 k~~W~~~-~~~~~~~~~~tssP~v~~g~---Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~ 216 (527)
T TIGR03075 141 KVVWSKK-NGDYKAGYTITAAPLVVKGK---VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG 216 (527)
T ss_pred CEEeecc-cccccccccccCCcEEECCE---EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence 8765332 111211 122111111343 34433 368999999 89988866532110
Q ss_pred -----------------CeE-EEEeeecCCCcEEEEEECC-----C-----------eEEEEEcCCCCeeeEEeCCCCcE
Q 001343 496 -----------------PVY-SICPHHKENIQFIFSTAID-----G-----------KIKAWLYDTMGSRVDYDAPGHWC 541 (1096)
Q Consensus 496 -----------------~v~-~~~~~~~~~~~~l~s~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~i 541 (1096)
.++ .+++ +++..+++.+..+ + .|.-.|+++++....++...+.+
T Consensus 217 ~~~~~tw~~~~~~~gg~~~W~~~s~--D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~ 294 (527)
T TIGR03075 217 EPGAKTWPGDAWKTGGGATWGTGSY--DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDE 294 (527)
T ss_pred ccccCCCCCCccccCCCCccCceeE--cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCC
Confidence 111 1223 2233455554421 2 56667888888887766543322
Q ss_pred ---------EEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEE--------E----cCcCccc----------
Q 001343 542 ---------TTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRT--------Y----AGFRKKS---------- 587 (1096)
Q Consensus 542 ---------~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~--------~----~~~~~~~---------- 587 (1096)
.-+.+..+|+ .++.+.. +|.+++.|..+|+.+.. . ......+
T Consensus 295 wD~d~~~~p~l~d~~~~G~~~~~v~~~~K----~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~ 370 (527)
T TIGR03075 295 WDYDGVNEMILFDLKKDGKPRKLLAHADR----NGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSAD 370 (527)
T ss_pred ccccCCCCcEEEEeccCCcEEEEEEEeCC----CceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCC
Confidence 2222334666 4556655 89999999999988621 1 0000000
Q ss_pred ------------------eEEEEEeCCCCEEEEEEc---------------------------------CCeEEEEeCCC
Q 001343 588 ------------------NGVVQFDTTQNHFLAVGE---------------------------------DSQIKFWDMDN 616 (1096)
Q Consensus 588 ------------------i~~~~~~~~~~~l~~~~~---------------------------------dg~i~iwd~~~ 616 (1096)
-...+++|+...++.... -|.|.-+|+.+
T Consensus 371 ~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~t 450 (527)
T TIGR03075 371 GKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPIT 450 (527)
T ss_pred CCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCC
Confidence 011456665555544322 24578888888
Q ss_pred CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccc
Q 001343 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1096)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 665 (1096)
++.......... ..... ..-.+.+++.++.+|.++.+|..+|+.+.
T Consensus 451 Gk~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 451 GKIVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred CceeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 888776654321 11222 22255577788889999999999995443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.014 Score=65.52 Aligned_cols=219 Identities=12% Similarity=0.160 Sum_probs=107.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
..-....+.++|+|+. +++ ..||.-.|+.....+.. ..+.-...+|++.++ +|
T Consensus 31 ~~~~p~~ls~npngr~-v~V-~g~geY~iyt~~~~r~k------------------------~~G~g~~~vw~~~n~-yA 83 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRF-VLV-CGDGEYEIYTALAWRNK------------------------AFGSGLSFVWSSRNR-YA 83 (443)
T ss_dssp -SS--SEEEE-TTSSE-EEE-EETTEEEEEETTTTEEE------------------------EEEE-SEEEE-TSSE-EE
T ss_pred CCcCCeeEEECCCCCE-EEE-EcCCEEEEEEccCCccc------------------------ccCceeEEEEecCcc-EE
Confidence 4556899999999994 555 35888888884332221 123445678998554 66
Q ss_pred EEECCCeEEEE-EccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 423 VAFTKHLIQLY-SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 423 s~~~dg~i~vw-d~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
+-...++|.|+ +.+. +..+.+ .+. ..+..+-. |. +|...+ ++.|.+|| .+++.++.+... +|..+
T Consensus 84 v~~~~~~I~I~kn~~~-~~~k~i-~~~---~~~~~If~---G~--LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V 150 (443)
T PF04053_consen 84 VLESSSTIKIYKNFKN-EVVKSI-KLP---FSVEKIFG---GN--LLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYV 150 (443)
T ss_dssp EE-TTS-EEEEETTEE--TT------S---S-EEEEE----SS--SEEEEE-TTEEEEE-TTT--EEEEESS---E-EEE
T ss_pred EEECCCeEEEEEcCcc-ccceEE-cCC---cccceEEc---Cc--EEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEE
Confidence 66668889996 4432 222211 111 12333332 76 555555 44899999 889999988743 38899
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCC----------CeeeEEeCC-CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTM----------GSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
.|++ ++.+++..+.+ .+.+++.+.. +........ ...|.+.+|..+ -++.+. ...++.+
T Consensus 151 ~Ws~--~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT------~~~lkYl 220 (443)
T PF04053_consen 151 IWSD--DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT------SNHLKYL 220 (443)
T ss_dssp EE-T--TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-------TTEEEEE
T ss_pred EEEC--CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc------CCeEEEE
Confidence 9976 56788777755 5666654432 001222222 456888888766 333332 3355543
Q ss_pred eCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 001343 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 570 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
--.....++.+. .++..+.+.+..+.++....|+.+..+.++
T Consensus 221 ~~Ge~~~i~~ld----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 221 VNGETGIIAHLD----KPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETTEEEEEEE-S----S--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EcCCcceEEEcC----CceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 211111222222 255666666666677777777777666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.04 Score=60.68 Aligned_cols=77 Identities=10% Similarity=0.170 Sum_probs=55.3
Q ss_pred cCCCeeeeeecCCCcEEEEecC-CeEEEEEcccceEEEeecCCCCCeeE-EEEecCCC----------------c-EEEE
Q 001343 830 LEEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTF-LAFHPQDN----------------N-IIAI 890 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~~la~~~d-g~v~iwd~~~~~~~~~~~~h~~~i~~-l~~s~~d~----------------~-~l~s 890 (1096)
....+.+++.+|++++.|+.++ |+|.++|+.++..++.+++-.+.-.. +....... . +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4566889999999998888765 99999999999999988876544222 11111011 1 3445
Q ss_pred eeCCCeEEEEeeccce
Q 001343 891 GTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 891 ~~~dg~i~iw~~~~~~ 906 (1096)
+-.-|.|.||.+..+.
T Consensus 386 aprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 386 APRRGILEVWSMRQGP 401 (415)
T ss_pred eccCCeEEEEecCCCC
Confidence 6678999999998877
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.21 Score=55.82 Aligned_cols=267 Identities=12% Similarity=0.113 Sum_probs=166.4
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
.....+.+.|+|..+.++-.....+.+-+......... ...-...-..++.++++..+...
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccceeeCCCCCeEEEe
Confidence 36778888999865454443333444444431111100 00011345678889988855544
Q ss_pred -ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEEE-cCCceEEEeeCCCCCeEEEE
Q 001343 425 -FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1096)
Q Consensus 425 -~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~ 501 (1096)
..++.|.+.|..+....... ..+. ....++++++++.++++-.. .++++.+.| .+++.+.....-..+ ..++
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~--~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a 166 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSI--PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA 166 (381)
T ss_pred cCCCCeEEEEcCcccceeeEe--eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence 44589999997776554432 1122 67789999999853333332 379999999 788887775544445 7778
Q ss_pred eeecCCCcEEEEE-ECCCeEEEEEcCCCCeee-E---EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee
Q 001343 502 PHHKENIQFIFST-AIDGKIKAWLYDTMGSRV-D---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1096)
Q Consensus 502 ~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1096)
+.| +|..++.. ..++.|.+.|........ . ..........+.++++|.++.+.... ..++.+...|..++..
T Consensus 167 ~~p--~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~~~v~~id~~~~~v 243 (381)
T COG3391 167 VDP--DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGSNNVLKIDTATGNV 243 (381)
T ss_pred ECC--CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCCceEEEEeCCCceE
Confidence 766 55655554 478999999976554442 0 11222345678999999987776541 1136899999988877
Q ss_pred eEE-EcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCC-CCccEEEEeC
Q 001343 577 KRT-YAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSK 639 (1096)
Q Consensus 577 ~~~-~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~ 639 (1096)
... +..... ....+..+|+|..+.+.. ..+.+.+.|..+............. ..+..+++.+
T Consensus 244 ~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 244 TATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 765 333332 344588999999988875 4488999999888777765543321 1244444444
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.21 Score=56.21 Aligned_cols=177 Identities=11% Similarity=0.032 Sum_probs=91.5
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcc---ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
+.|.++.|+.+. .|++...||.+++||+...... .......-....+....+..+|- .+++ .++.+.+-+ .
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt--~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLT--GNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEEC--CCCeEEEEeCc
Confidence 789999999865 4555668999999998643300 00001111122233333333442 3333 355566555 3
Q ss_pred CCc-eEEEe---eCCCC------CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCE
Q 001343 483 SGR-KLFNF---EGHEA------PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 483 ~~~-~~~~~---~~~~~------~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 552 (1096)
... ..+.+ .+... ....+ .....+....+....++.+.+.+-..... ....+++..+++||+|++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF 230 (410)
T ss_pred cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence 322 11111 11000 00111 11122333444445555665443222111 112457999999999999
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 597 (1096)
++.... ++.+.+.+..-.+....+..........+.|..+.
T Consensus 231 iAl~t~----~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 231 IALFTD----SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred EEEEEC----CCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 998875 78888887665556655555433344556666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.011 Score=66.05 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=114.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEE---CC-CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 405 VPISVSRVAWSPDGNYVGVAF---TK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~---~d-g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
....+..-+|+|+++.++... .. ..+.++++++++..... . -.+.-..-+|+|||+. ++++...||...||
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~-~---~~g~~~~P~fspDG~~-l~f~~~rdg~~~iy 265 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL-N---FNGNNGAPAFSPDGSK-LAFSSSRDGSPDIY 265 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee-c---cCCccCCccCCCCCCE-EEEEECCCCCccEE
Confidence 445677779999999877552 22 46999999998765422 2 3334456789999997 56667777765555
Q ss_pred --EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEEc--CCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLY--DTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 481 --d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
|..++.+..+..-.+.-..-.|+| ||+.|+-. +..|.-.||-+ +.... ..+......-..-.++|||++++.
T Consensus 266 ~~dl~~~~~~~Lt~~~gi~~~Ps~sp--dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 266 LMDLDGKNLPRLTNGFGINTSPSWSP--DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEcCCCCcceecccCCccccCccCCC--CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEE
Confidence 566665555553333333445555 66666554 45566555544 43333 233333333337789999999998
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEc
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
.+.. .+.-.|.+.|+.++...+.+.... ....-.+.+++..++..+.
T Consensus 343 ~~~~-~g~~~i~~~~~~~~~~~~~lt~~~--~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 343 ESSS-GGQWDIDKNDLASGGKIRILTSTY--LNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred Eecc-CCceeeEEeccCCCCcEEEccccc--cCCCCCcCCCCceEEEecc
Confidence 8742 223457777776665444443321 2223557778877766543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.069 Score=53.37 Aligned_cols=248 Identities=10% Similarity=0.140 Sum_probs=138.9
Q ss_pred ceEEeecCCCceEEEEEcCCCCcEEEEEeCCC-eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
+++..+.-...-..++|+|.-.+-++.+-.-| ...++|....+...... .....-+.||. .|
T Consensus 59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-----------s~~~RHfyGHG------vf 121 (366)
T COG3490 59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-----------SQEGRHFYGHG------VF 121 (366)
T ss_pred ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-----------cccCceeeccc------cc
Confidence 33443333344556888888776566665555 46788988877654200 00112255663 68
Q ss_pred cCCCCEEEEEECC-----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC----------------
Q 001343 415 SPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD---------------- 473 (1096)
Q Consensus 415 spd~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~---------------- 473 (1096)
||||.+|...-.| |.|-|||...+ +....++..|.-.-..+.|.+||+ .++.+..
T Consensus 122 s~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGr--tlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 122 SPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGR--TLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred CCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCc--EEEEeCCceecccccCccccchh
Confidence 9999999865333 78999998843 444457888888899999999999 4444321
Q ss_pred --CCcEEEEE-cCCceEEEe--e--CCCCCeEEEEeeecCCCcEEEEEECCCeE-----EEEEcCCCCeeeEEeCC----
Q 001343 474 --DKLIKVWE-LSGRKLFNF--E--GHEAPVYSICPHHKENIQFIFSTAIDGKI-----KAWLYDTMGSRVDYDAP---- 537 (1096)
Q Consensus 474 --d~~i~iwd-~~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i-----~iwd~~~~~~~~~~~~~---- 537 (1096)
.-++.+.| .+|+.+.+. . .+.-.|..++.. .||..++.+-..|.- .+=-...++...-+...
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g--~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG--RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeC--CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence 11233444 455544321 1 223345555542 243333322221110 00001112222212111
Q ss_pred ---CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 538 ---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 538 ---~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
.+.|-+++.+.+...++..+. ..+...+||..+|..+..-..... .-..+...-+++.+.+|.+.++..
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP---~GN~~vi~da~tG~vv~~a~l~da-----aGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSP---RGNRAVIWDAATGAVVSEAALPDA-----AGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecC---CCCeEEEEEcCCCcEEeccccccc-----ccceeccCceEEecCCceEEeccc
Confidence 225778888877777766654 256788999999988765443221 222334455777777888887743
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.18 Score=53.82 Aligned_cols=229 Identities=11% Similarity=0.113 Sum_probs=129.8
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE-----
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN----- 489 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~----- 489 (1096)
..++.|+.|+.+| +.+++......... + .+...|..+...++-+ .++.-+ |+.+++++ ..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3578999999998 89999833222221 1 2333499999999887 455444 59999999 33222220
Q ss_pred ---------eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-----CeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 490 ---------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-----GSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 490 ---------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
-......+...+......+...+......+|.+|.+... .....+... ..+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 011222344443112223344555555669999887653 223343333 578888888 556766
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCc-----------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE--E
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--S 622 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 622 (1096)
+. .....+.|+.++.....+..... .++..+.. +++.+|++. +..-.+.|. .|+... .
T Consensus 154 ~~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GT-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred Ee-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 65 55688889987766554432211 12333333 334555543 333334444 443333 3
Q ss_pred eecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCC
Q 001343 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (1096)
Q Consensus 623 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 671 (1096)
+.... .+..+++. ..+|+..+.+ .|.||++.++ +..+.+...
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~~-~iEV~~~~~~-~lvQ~i~~~ 266 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSSN-SIEVRSLETG-ELVQTIPLP 266 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECCC-EEEEEECcCC-cEEEEEECC
Confidence 33322 45566663 3477766654 5999999998 556555543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.11 Score=55.28 Aligned_cols=241 Identities=12% Similarity=0.089 Sum_probs=128.3
Q ss_pred EEeCCCCEEE-EEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccC
Q 001343 592 QFDTTQNHFL-AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 592 ~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
.|.++...|+ +--..+.|.-|+..+++... +.... .+.++..-..+..|+++.. .+.+++..++.. ...+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p~---~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~-~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSPG---GFSSGALIDAGGRLIACEH--GVRLLDPDTGGK-ITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECCC---CcccceeecCCCeEEEEcc--ccEEEeccCCce-eEEecc
Confidence 3556655443 33366778888877554332 22222 2334433334444444432 456667655522 122222
Q ss_pred CCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCC
Q 001343 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (1096)
Q Consensus 671 ~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~ 750 (1096)
..........+...+.|+|++.+....... .-.......-.+|.+.. .+
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~----------------------------~~~~~~~~~G~lyr~~p---~g 152 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFD----------------------------LGKSEERPTGSLYRVDP---DG 152 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccc----------------------------cCccccCCcceEEEEcC---CC
Confidence 222222345667888888888755543100 00000001114555541 12
Q ss_pred ceEEEEcCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCC
Q 001343 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (1096)
Q Consensus 751 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~ 829 (1096)
.... .+.+ +-..-+.|+||||++.+..+.+ .+.+..|+++.......++ ........
T Consensus 153 ~~~~-l~~~---~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~----------------~~~~~~~~-- 210 (307)
T COG3386 153 GVVR-LLDD---DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR----------------RGFVDFDE-- 210 (307)
T ss_pred CEEE-eecC---cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc----------------ceEEEccC--
Confidence 2222 1112 3445678999999987777766 4777777765311111111 00001111
Q ss_pred cCCCeeeeeecCCCcEEEEec-CC-eEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeC
Q 001343 830 LEEAVPCIALSKNDSYVMSAT-GG-KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~~la~~~-dg-~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~ 893 (1096)
..+..-.++...+|.+-+++. +| .|.+|+.. |+++..+.-+...+++++|--.+.+.|.+.+.
T Consensus 211 ~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 211 EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 344555688889998886555 43 89999986 99999988887889999995424555554443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.057 Score=64.07 Aligned_cols=141 Identities=15% Similarity=0.139 Sum_probs=94.1
Q ss_pred CCEEEEE-ECCCeEEEEEccCCCccccceeecccccC-EEEEEEec-----CCCcEEEEEEeCCCcEEEEE--cCCceEE
Q 001343 418 GNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGA-VNDLAFAY-----PNKLLCVVTCGDDKLIKVWE--LSGRKLF 488 (1096)
Q Consensus 418 ~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~l~~h~~~-v~~l~~s~-----d~~~~~l~s~s~d~~i~iwd--~~~~~~~ 488 (1096)
.++|+.- .....|+-.|++.|+.+. ++..|... |..++=.. +.. ..+.|-.++.+..|| ..+..+.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~---eW~~~~~~~v~~~~p~~K~aqlt~e--~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVE---EWKVHDDIPVVDIAPDSKFAQLTNE--QTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEE---EeecCCCcceeEecccccccccCCC--ceEEEECCCceEEeccCCCCCcee
Confidence 3444332 345788999999998877 46555543 55443211 122 345677789999999 5554332
Q ss_pred EeeC----CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCC
Q 001343 489 NFEG----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1096)
Q Consensus 489 ~~~~----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~ 564 (1096)
.-.. ......|++- +++| +|++|+.+|.||+||--.......+.+-+.+|..|..+.||+++++.+ +.
T Consensus 568 ~~~~k~Y~~~~~Fs~~aT--t~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-----~t 639 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFAT--TEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-----KT 639 (794)
T ss_pred eccccccccCCCceEEEe--cCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-----cc
Confidence 2122 2344666664 3344 899999999999998543333445666678999999999999999877 66
Q ss_pred eEEEEeC
Q 001343 565 FLVEWNE 571 (1096)
Q Consensus 565 ~i~iwd~ 571 (1096)
.|.+++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 7888775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.24 Score=56.61 Aligned_cols=243 Identities=11% Similarity=0.108 Sum_probs=123.7
Q ss_pred CEEEEEEcCCCCEEEEE-ECCC----eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC--------
Q 001343 408 SVSRVAWSPDGNYVGVA-FTKH----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-------- 474 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-------- 474 (1096)
.+....+||||++||.+ +..| .|+++|+.+|+.+.. .+... ....+.|.+|++. ++.+...+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44568999999999866 3333 599999999865542 12211 1223999999984 33443222
Q ss_pred --CcEEEEE-cCCce--EEEeeCCCCCe--EEEEeeecCCCcEEEEEECC----CeEEEEEcCCC----CeeeEEeCC-C
Q 001343 475 --KLIKVWE-LSGRK--LFNFEGHEAPV--YSICPHHKENIQFIFSTAID----GKIKAWLYDTM----GSRVDYDAP-G 538 (1096)
Q Consensus 475 --~~i~iwd-~~~~~--~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~----~~~~~~~~~-~ 538 (1096)
..|+.|. -++.. ...+....... ..+.. +.++++++..... ..+.+.++... .....+... .
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 2366776 33322 23444444443 34444 4577777654333 23566676653 223333332 3
Q ss_pred CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee---eEEEcCcCccceEEEEEeCCCCEEEEE-EcCC--eEEEE
Q 001343 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDS--QIKFW 612 (1096)
Q Consensus 539 ~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~iw 612 (1096)
.....+... +..+...+......+.|...++.+... ...+..+.. .+....+...+++|+.. ..++ .|+++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 333333333 433333333333467888888877652 324444433 22223333445555554 3444 68899
Q ss_pred eCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC----CCcEEEEEcCCC
Q 001343 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIG 661 (1096)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~ 661 (1096)
++..+.....+..... +.|..+...+++..+..... -+++..||+.++
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 9984555555554432 24555554555544433222 256777787776
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.52 Score=52.73 Aligned_cols=240 Identities=14% Similarity=0.129 Sum_probs=154.4
Q ss_pred CEEEEEEcCCCCEEEEEECC-CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc
Q 001343 408 SVSRVAWSPDGNYVGVAFTK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 485 (1096)
....+...+++..+...... ..+.+.+.. ...... ....-...-..++.++++.. ..++...++.|.+.| ...+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 45667888888655544322 244444443 111111 01111134567888888886 566666679999999 5555
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEEC---CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+....--. ....+++.+ +++.+.++.. ++++.+.|-.+............+ ..++++|+|+.++.+.. .
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 555443222 456677765 4555555544 688888888877777764333334 89999999998887763 3
Q ss_pred CCeEEEEeCCCCeeeE-E----EcCcCccceEEEEEeCCCCEEEEEEcC---CeEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 563 DSFLVEWNESEGTIKR-T----YAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~-~----~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
++.+.+.|..+....+ . .... .....+.+++++..+++.... +.+...|..++............ ....
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~~--~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~ 257 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGVG--TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRG 257 (381)
T ss_pred CCeEEEEeCCCcceeccccccccccC--CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCc
Confidence 8899999977666553 1 1111 133458899999977765543 58999999988877763222222 4567
Q ss_pred EEEeCCCCEEEEEECC-CcEEEEEcCCC
Q 001343 635 LRFSKEGNLLAVTTAD-NGFKILANAIG 661 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~d-g~i~iwd~~~~ 661 (1096)
+..+|+|..+.+.... +.+.+.|..+.
T Consensus 258 v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 258 VAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 8999999998888554 77888877665
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.069 Score=58.46 Aligned_cols=216 Identities=15% Similarity=0.133 Sum_probs=119.1
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC----CCEEEEEEC----------CCeEEE
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----GNYVGVAFT----------KHLIQL 432 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----~~~l~s~~~----------dg~i~v 432 (1096)
+.|+|.|..+.+.+.+..+. -..+-..+..+.+..+ ..+|++|+. .|.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 36788888877766542221 0111123334444433 568887753 288999
Q ss_pred EEccCC----CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc-eEEE-eeCCCCCeEEEEeeec
Q 001343 433 YSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFN-FEGHEAPVYSICPHHK 505 (1096)
Q Consensus 433 wd~~~~----~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~-~~~~-~~~~~~~v~~~~~~~~ 505 (1096)
+++... ..++... -....++|++++-. .+ .|+.+. .+.|.+|+ ...+ .... +......+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~-~~~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIH-STEVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEE-EEEESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEE-EEeecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999884 2233222 22457889999877 33 444443 58999999 4444 3322 22223356666553
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCCe-ee--EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC-------C-
Q 001343 506 ENIQFIFSTAIDGKIKAWLYDTMGS-RV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-------G- 574 (1096)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~-~~--~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~-------~- 574 (1096)
+++++.|+....+.++.++.... .. ........++++.+-++++.++++.. ++.+.++.... +
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-SS-SSTTTTT
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEECCCCccccccc
Confidence 35899999999998886665333 22 22334557899999877776666654 88888887652 1
Q ss_pred -eeeEEEcCcCccceEEE---EEeC--CC------CEEEEEEcCCeEEE
Q 001343 575 -TIKRTYAGFRKKSNGVV---QFDT--TQ------NHFLAVGEDSQIKF 611 (1096)
Q Consensus 575 -~~~~~~~~~~~~~i~~~---~~~~--~~------~~l~~~~~dg~i~i 611 (1096)
+......-|-+..+.++ ++.| .+ ..++.++.+|.|..
T Consensus 213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 23333333434455555 3333 11 13666777777663
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.26 Score=52.58 Aligned_cols=228 Identities=15% Similarity=0.109 Sum_probs=126.0
Q ss_pred CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 001343 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434 (1096)
Q Consensus 355 ~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd 434 (1096)
.++ .|+.|+.+| +.++++....... ...+...|..+...|+-+.|++-+ |+.+.+++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~--------------------~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPT--------------------RILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccce--------------------eEeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 345 588888888 8999983222111 011333499999999887777664 49999999
Q ss_pred ccCCCccccce-----------eecccccCEEEEE--EecCCCcEEEEEEeCCCcEEEEE-cCC-----ceEEEeeCCCC
Q 001343 435 YAGSNDLRQHS-----------QIDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWE-LSG-----RKLFNFEGHEA 495 (1096)
Q Consensus 435 ~~~~~~~~~~~-----------~l~~h~~~v~~l~--~s~d~~~~~l~s~s~d~~i~iwd-~~~-----~~~~~~~~~~~ 495 (1096)
+..-....... ........+...+ -...+.. .|+ ....+.|.+|. ... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLC-VAVKKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEE-EEECCEEEEEEEECCcccccceeEEEE-cCC
Confidence 87643332110 0011223344444 1123331 344 44456888888 332 3445544 346
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC------------CcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------------HWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
.+.+++|.. +.++.|..++ ..+.|+.++.....+.... .++..+.. +++.+|++. +
T Consensus 140 ~~~~i~~~~----~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~------~ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY------D 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe------c
Confidence 788888862 4677776544 6678888655543332111 13333333 345555543 2
Q ss_pred CeEEEEeCCCCeeeE--EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 564 SFLVEWNESEGTIKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
..-...|. .|+..+ .+.-.. ....+.+. ..++++.+. +.|.||++.++++++.+...
T Consensus 208 ~~g~fv~~-~G~~~r~~~i~W~~--~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVNK-NGEPSRKSTIQWSS--APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEcC-CCCcCcccEEEcCC--chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 22233333 343333 222211 23334442 356776665 56999999999999988755
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.029 Score=65.68 Aligned_cols=211 Identities=12% Similarity=0.118 Sum_probs=113.2
Q ss_pred CCeeeeeecCCCcEEEEec-------CC--eEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCC-CeEEEEe
Q 001343 832 EAVPCIALSKNDSYVMSAT-------GG--KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-STIHIYN 901 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~-------dg--~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~d-g~i~iw~ 901 (1096)
..+.+.++||||+.+|... ++ .|.+++. .+.......+. ..+.-.|+| ||+.|++.... ..+++.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999998887654 32 3666665 33332223232 478899999 88877776543 2233332
Q ss_pred eccceeeee--eccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEE---EEccccee-c---cccccCC
Q 001343 902 VRVDELCVW--SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAI---YDASKMER-I---RQWTPQD 972 (1096)
Q Consensus 902 ~~~~~~~~w--~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~i---wd~~~~~~-~---~~~~~~~ 972 (1096)
-.... .+| .++.-+ ..+.+. ..|..+.|||||..++...+++|.+ -....|+. + +.+...
T Consensus 426 ~~~~g-ql~~~~vd~ge-----~~~~~~----g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~- 494 (591)
T PRK13616 426 DPATG-QLARTPVDASA-----VASRVP----GPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPG- 494 (591)
T ss_pred cCCCc-eEEEEeccCch-----hhhccC----CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecc-
Confidence 21111 122 111100 111122 2799999999999999955688887 44455541 1 112222
Q ss_pred CCCCCceEEEEeeCCcEEEEEecCCcEEEEecCC-CceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeC
Q 001343 973 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1051 (1096)
Q Consensus 973 ~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~d 1051 (1096)
....+.++.|..++.++ ++..++...+|.+.- |.....+... + ....+. .|+-++ ..++.+..+
T Consensus 495 -l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~-----n---~~~~v~--~vaa~~---~~iyv~~~~ 559 (591)
T PRK13616 495 -LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSR-----N---LSAPVV--AVAASP---STVYVTDAR 559 (591)
T ss_pred -cCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCC-----C---ccCceE--EEecCC---ceEEEEcCC
Confidence 14446889999999965 555555555555432 2211111100 1 233444 355554 345555666
Q ss_pred CcEEEEccCCCCCccccCCCC
Q 001343 1052 GSVKVMEPSESEGKWGVSPPV 1072 (1096)
Q Consensus 1052 g~i~vW~v~~~~~~~~~~~~~ 1072 (1096)
|.+.+=.-.+++..|+.-...
T Consensus 560 g~~~l~~~~~~~~~W~ev~~l 580 (591)
T PRK13616 560 AVLQLPNSDSGDQYWREVPGL 580 (591)
T ss_pred ceEEecCCCCCCCCceECccc
Confidence 644433233344778765544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.14 Score=54.54 Aligned_cols=221 Identities=15% Similarity=0.112 Sum_probs=130.8
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeE
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i 430 (1096)
.|.|++..++.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++.. -+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~~--g~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACEH--GV 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEcc--cc
Confidence 3556666567777778899999988775432 11 3334455555555556665533 45
Q ss_pred EEEEccCCCccccceee-ccc-ccCEEEEEEecCCCcEEEEEEeCC------------CcEEEEEcCCceEEEeeCCCCC
Q 001343 431 QLYSYAGSNDLRQHSQI-DAH-VGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWELSGRKLFNFEGHEAP 496 (1096)
Q Consensus 431 ~vwd~~~~~~~~~~~~l-~~h-~~~v~~l~~s~d~~~~~l~s~s~d------------~~i~iwd~~~~~~~~~~~~~~~ 496 (1096)
.+++.+++.....+... .+. ....+.+...|+|. +-+ +... |.++..|..+..++.+..+-..
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 66776655442211111 111 24567888889987 333 3322 3344444456666666666666
Q ss_pred eEEEEeeecCCCcEEEEE-ECCCeEEEEEcCC-----CCe--eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 497 VYSICPHHKENIQFIFST-AIDGKIKAWLYDT-----MGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~-----~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
-+.++|+| |++.++.+ +..+.|.-|++.. ... ........+..-.++...+|.+-+++.. +.+.|..
T Consensus 165 ~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~ 239 (307)
T COG3386 165 PNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVR 239 (307)
T ss_pred cCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEE
Confidence 68899987 55555555 4458888887762 111 1122233445667788888887754432 1348999
Q ss_pred EeCCCCeeeEEEcCcCccceEEEEEe-CCCCEEEEEE
Q 001343 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 604 (1096)
|+.. |+.+..+..+.. .+.+++|. ++.+.|++.+
T Consensus 240 ~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 9988 999888887754 55666664 3445554444
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.38 Score=53.17 Aligned_cols=84 Identities=11% Similarity=0.191 Sum_probs=61.2
Q ss_pred CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC----------------C-E-E
Q 001343 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ----------------N-H-F 600 (1096)
Q Consensus 539 ~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~-~-l 600 (1096)
..+.+++.+|++++.++.. .-|.|.++|+.++..++.++|..+..+.-+.....+ . + +
T Consensus 308 R~~~~i~~sP~~~laA~tD----slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTD----SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ceEEEEEECCCCCEEEEEc----CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 3588999999988777753 389999999999999999999877443333222111 1 1 2
Q ss_pred EEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 601 LAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
+-+-..|.|.||.++.|..+..+...
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEeC
Confidence 33567899999999999888777643
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00024 Score=77.79 Aligned_cols=188 Identities=12% Similarity=0.106 Sum_probs=117.4
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee--eEEeCCCCcEEEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
+.|+++....+..++++|..+|.|-+-.++..... .....+...+++++|++ |.+.|++|-...+.+..+.|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 45555544444467888889999998877654332 23345556899999988 4556666654445678899999987
Q ss_pred C--eee--EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC-eEEEEeecCCCCCCccEEEEeC-CCCEEEEE
Q 001343 574 G--TIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK-EGNLLAVT 647 (1096)
Q Consensus 574 ~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~ 647 (1096)
+ .+. ..|.+.......+++|-.+.+.+++|.....+.++|++.. .....+.. ..+..+...| .++++++-
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT----k~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT----KYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh----hhcccceecCCCCCceecc
Confidence 6 221 1222212224557888888889999999889999998732 22222211 1456778888 67777766
Q ss_pred ECCCcEEEEEc-CCCccccccccCCCcccccCcceeEEeecCCC
Q 001343 648 TADNGFKILAN-AIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1096)
Q Consensus 648 ~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 690 (1096)
. ||.|.+||. .+-...+..+........ ..+..+++.|...
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~-~~l~~~aycPtrt 256 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKP-KQLFALAYCPTRT 256 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcc-cceeeEEeccCCc
Confidence 5 899999993 333333333333222211 2456677776543
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.024 Score=61.49 Aligned_cols=144 Identities=12% Similarity=0.135 Sum_probs=98.9
Q ss_pred CCCCEEE-EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEE-----EEEeCCCcEEEEE--cCCc-e
Q 001343 416 PDGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV-----VTCGDDKLIKVWE--LSGR-K 486 (1096)
Q Consensus 416 pd~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l-----~s~s~d~~i~iwd--~~~~-~ 486 (1096)
.+.++|+ ++.....++=.|++.|+.+. ++.-|.. |+-+.+.|+.+...+ +.|-.|..|.-|| ..++ .
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 3444444 45555678888999998876 4555555 778888887543112 3456788999999 5555 3
Q ss_pred EEEeeCCC----CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 487 LFNFEGHE----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 487 ~~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
+..-++|. ....|.+- .++ .+|++|+.+|.||+||--.......+++-+.+|..+..+.+|+++++.+
T Consensus 419 l~~~q~kqy~~k~nFsc~aT--T~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----- 490 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFAT--TES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC----- 490 (644)
T ss_pred eeeeeccccccccccceeee--cCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----
Confidence 33333332 23444443 444 4899999999999998644444556777788999999999999998876
Q ss_pred CCeEEEEeC
Q 001343 563 DSFLVEWNE 571 (1096)
Q Consensus 563 ~~~i~iwd~ 571 (1096)
+..+.+.++
T Consensus 491 ~tyLlLi~t 499 (644)
T KOG2395|consen 491 KTYLLLIDT 499 (644)
T ss_pred ccEEEEEEE
Confidence 667777664
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0038 Score=68.88 Aligned_cols=94 Identities=19% Similarity=0.392 Sum_probs=71.4
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEE-EEEEcCCCCEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS-RVAWSPDGNYVGV 423 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spd~~~l~s 423 (1096)
..|.-+.|+|.-. ++|++..+|.|.+..+. -+.+ |. +.-|+..++ +++|.|||+.||+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEE
Confidence 3678899999988 89999999999998887 3332 32 222445555 9999999999999
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEec
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~ 461 (1096)
|-.||+|++-|++++..+... ...-...|.++-|.+
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 999999999999998766531 223445677777763
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.80 E-value=1.9 Score=51.59 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=73.7
Q ss_pred EEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEE--EecCCCceeEEEc
Q 001343 937 VQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGV--FDADTLRLRCYIA 1014 (1096)
Q Consensus 937 v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~v--wd~~~~~~~~~~~ 1014 (1096)
.+..|.+.+++++....+++||+-..++++...... ....|..+.+ .+..+++|...-.|.+ |+-+..+++....
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~-~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKF-IPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhcc-CceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 466777778888888999999998888777665432 2455666664 5667888886666665 4444445554433
Q ss_pred cccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCC
Q 001343 1015 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1015 ~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
.+ -..+|+ ++.+- |.+.+|.+..=|.+.+-.+...-
T Consensus 1016 D~---------~pR~Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1016 DP---------VPRHVT--ALELL--DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred CC---------ccceee--EEEEe--cCCceeeccccCcEEEEECCCcc
Confidence 22 233566 34443 67788888888888887765543
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.17 Score=49.08 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=66.0
Q ss_pred EEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEE
Q 001343 768 VRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1096)
Q Consensus 768 ~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~l 846 (1096)
..++|+.+.+.+....+ +-+|.-|+.+... |... ..-.++|++..+.....+ --.+++..+|.+.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~t----G~~s--nr~~i~dlrk~~~~e~~~--------PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT----GDLS--NRKVIFDLRKSQPFESLE--------PDGMTIDTEGNLY 226 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCc----cccc--CcceeEEeccCCCcCCCC--------CCcceEccCCcEE
Confidence 46788888777765554 6788778854321 1111 122344444433222111 1235666678766
Q ss_pred EEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEec
Q 001343 847 MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1096)
Q Consensus 847 a~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 882 (1096)
++.- .++|...|..+|+.+.+++-+...|++++|--
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 6665 68899999999999999999999999999954
|
|
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0014 Score=60.90 Aligned_cols=64 Identities=14% Similarity=0.272 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC
Q 001343 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD 135 (1096)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 135 (1096)
++|+|+.|.||+|+..|+.++|..|+.+.-.-+...+.+++++|..+....+..+++....++.
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~ 103 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRS 103 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHh
Confidence 8999999999999999999999999999877777777888999988777776665555544433
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0017 Score=59.56 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-------chHHHHHHH
Q 001343 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1096)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1096)
++|+|+.+.||||+..|+.++|..|+.+.-.-+...+.+++++|+.+....+..+++....+++ ++.+-..|+
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~ 108 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL 108 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence 9999999999999999999999999998777666667899999999998888887776665544 233334555
Q ss_pred HHHHh
Q 001343 145 IELKK 149 (1096)
Q Consensus 145 ~~l~~ 149 (1096)
..|++
T Consensus 109 ~~L~~ 113 (133)
T cd08044 109 RFLES 113 (133)
T ss_pred HHHHH
Confidence 55554
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0048 Score=41.98 Aligned_cols=35 Identities=31% Similarity=0.608 Sum_probs=30.1
Q ss_pred EEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 001343 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWE 373 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd 373 (1096)
...+. |...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 44444 888999999999997 799999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.24 Score=54.21 Aligned_cols=175 Identities=14% Similarity=0.076 Sum_probs=105.6
Q ss_pred cEEEEE-cCCceEEEeeCC-CCCeEEEEeee-cC----CCcEEEEEEC----------CCeEEEEEcCCC----Ceee--
Q 001343 476 LIKVWE-LSGRKLFNFEGH-EAPVYSICPHH-KE----NIQFIFSTAI----------DGKIKAWLYDTM----GSRV-- 532 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~~~~~-~~~v~~~~~~~-~~----~~~~l~s~~~----------dg~i~iwd~~~~----~~~~-- 532 (1096)
.|++.| .+.+.+.++.-. ...+.+++... .. ...+|++|+. .|.|.++++... ....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 577888 667666554322 22355554322 21 2467777753 299999999874 1211
Q ss_pred EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe-eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEE
Q 001343 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1096)
Q Consensus 533 ~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 611 (1096)
......++|++++-- ++. ++++. ...|++|++...+ ....-..+....+.++.. .++++++|.....+.+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-----g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-----GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-----TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-----cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEE
Confidence 112335678888766 344 55544 6789999998777 544433333324444443 4679999998888888
Q ss_pred EeCCC-CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 612 WDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 612 wd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+..+. ...+..+........+.++.|-+++..++++..+|.+.++...
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 75543 3333333332223368888888666799999999999999875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0055 Score=41.69 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=34.2
Q ss_pred ceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEe
Q 001343 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1096)
Q Consensus 862 ~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~ 901 (1096)
++.+..+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355667778899999999999 789999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.1 Score=61.21 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=89.3
Q ss_pred CCeeEEEEecCCCcEEEEee------CCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEE
Q 001343 873 PASTFLAFHPQDNNIIAIGT------EDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 946 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~~l~s~~------~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l 946 (1096)
..+.+.+++| |++.++... .|+.-.||-...+. . ......+. ..+...|+|||..|
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg------------~--~~~lt~g~---~~t~PsWspDG~~l 411 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGG------------V--AVQVLEGH---SLTRPSWSLDADAV 411 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCC------------c--ceeeecCC---CCCCceECCCCCce
Confidence 4678899999 788777665 24444555433222 0 11122232 46889999998877
Q ss_pred EEEec-------------ceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEE---EecCCCcee
Q 001343 947 LVVHE-------------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGV---FDADTLRLR 1010 (1096)
Q Consensus 947 ~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~v---wd~~~~~~~ 1010 (1096)
++..| +.+.+.+++.++... . +...|..+.|||||+.||... +|.|.| -....|..
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~--~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~- 483 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----R--VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY- 483 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh----c--cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce-
Confidence 77322 234444554444322 1 156799999999999988766 577777 55455651
Q ss_pred EEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 1011 CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 1011 ~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
.+.....+..+ -...+. .+.|.+ ++. |+++..++.-.+|.+.-
T Consensus 484 -~l~~~~~l~~~---l~~~~~--~l~W~~-~~~-L~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 484 -ALTNPREVGPG---LGDTAV--SLDWRT-GDS-LVVGRSDPEHPVWYVNL 526 (591)
T ss_pred -eecccEEeecc---cCCccc--cceEec-CCE-EEEEecCCCCceEEEec
Confidence 11111111112 122234 488987 666 55666666666776544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.45 Score=51.65 Aligned_cols=150 Identities=13% Similarity=0.077 Sum_probs=74.2
Q ss_pred CcEEEEEE-CCCeEEEEEcCCCC--e--eeEEeC---CC----CcEEEEEEcCCCCEEEEEeecc--CCCCeEEEEeCCC
Q 001343 508 IQFIFSTA-IDGKIKAWLYDTMG--S--RVDYDA---PG----HWCTTMLYSADGSRLFSCGTSK--DGDSFLVEWNESE 573 (1096)
Q Consensus 508 ~~~l~s~~-~dg~i~iwd~~~~~--~--~~~~~~---~~----~~i~~l~~s~~~~~l~~~~~~~--~~~~~i~iwd~~~ 573 (1096)
.++|+..+ ..+.|.|.|+.+.- . ...+.. .. .....+..-|+|+.++++-.+. ++.+.+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 45666665 67889999987322 1 112211 00 1233445558998888765543 4456888999988
Q ss_pred CeeeEEEcCcCc--cceEEEEEeCCCCEEEEEE--------------------cCCeEEEEeCCCCeEEEEeecCCCCCC
Q 001343 574 GTIKRTYAGFRK--KSNGVVQFDTTQNHFLAVG--------------------EDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 574 ~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
.+.......... ..-..+.+.|..+.+++.. ...++.+||+.+.+.++++........
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888877765433 2344577888888888853 246899999999999999987654224
Q ss_pred ccEEEEeC--CCCEEEEEE-CCCcEEEEE
Q 001343 632 LPRLRFSK--EGNLLAVTT-ADNGFKILA 657 (1096)
Q Consensus 632 v~~~~~s~--~~~~l~~~~-~dg~i~iwd 657 (1096)
+..+.|.. +..+=++++ -.++|..|-
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~ 275 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFY 275 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEE
Confidence 55666654 333333332 334444443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.086 Score=62.61 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=95.8
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCCC-eEEEEeeec---CCCcEEEEEECCCeEEEEEcCCCCeeeEE-e----C
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP-VYSICPHHK---ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-D----A 536 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~----~ 536 (1096)
+|........|+-.| ..|+.+..+..|... |..++.... -+..-.+.|-.+..+..||.+........ . .
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 344445568899999 899999999987754 666653211 01234667888889999999865422211 1 1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 537 ~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
......|++-+.+| +||+|+. +|.|++||--..+....+.+... +|..+..+.||+++++.+. ..+.+++.
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~----~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSN----KGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeC----CCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 23367888888777 5666665 99999999543333344555554 8999999999999888775 46666664
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.32 Score=57.22 Aligned_cols=233 Identities=11% Similarity=0.021 Sum_probs=120.4
Q ss_pred CCCEEEEEECC------CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC------CcEEEEE-cC
Q 001343 417 DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LS 483 (1096)
Q Consensus 417 d~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d------~~i~iwd-~~ 483 (1096)
.+..+++||.+ ..+..||..++.-.. ...+. +...-.+++... +. +.++||.| .++..|| ..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 35556666665 367888888763222 11222 222344455543 44 78888888 3677788 55
Q ss_pred CceEE--EeeCCCCCeEEEEeeecCCCcEEEEEECCCe-----EEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 484 GRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGK-----IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 484 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
++-.. .+...........+ +|.+.++||.||. +-.||..+.+-...-......-..-...-+|...++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 44222 11111111212221 5678889998875 5667666544333222222111122222456666666
Q ss_pred eeccCC--CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC-----eEEEEeCCCCeEEEEeecCCCC
Q 001343 557 GTSKDG--DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 557 ~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
|.+... -..+..||..+......-.-.....-..++ .-++...+.||.|+ +|..||..+.+....-......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 643322 257888888876654332222221111122 23566777777665 3788888887766553222221
Q ss_pred CCccEEEEeCCCCEEEEEECCCc-----EEEEEcCCC
Q 001343 630 PNLPRLRFSKEGNLLAVTTADNG-----FKILANAIG 661 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~ 661 (1096)
..+....+ ++...++|+.||. |..||..++
T Consensus 514 s~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 514 SAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 12222222 6678888887754 555655544
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=4.4 Score=49.23 Aligned_cols=244 Identities=8% Similarity=0.015 Sum_probs=119.3
Q ss_pred CCEEEEEEcCCCCEEEEEECC-----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-----Cc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KL 476 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~ 476 (1096)
-.+..+.|||||++|+.+... ..|++.|+.+|..+.. .+.+ . -..++|.+|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 357778999999999876432 3688999988864332 1222 1 156999999985 33433322 35
Q ss_pred EEEEE-cCC--ceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC---CCeEEEEEcCC--CCeeeEEeCCCCcEEEEEEcC
Q 001343 477 IKVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDT--MGSRVDYDAPGHWCTTMLYSA 548 (1096)
Q Consensus 477 i~iwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~~s~ 548 (1096)
|+.++ -++ +....+........ +......++.+++..+. ++.+.+++... ................+. +.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 66677 444 22333443333333 22222335566554433 35688888532 222222322223233332 22
Q ss_pred CCCEEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecC
Q 001343 549 DGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAE 626 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~ 626 (1096)
+..+...+........|...++.+ ++....+.......+..+.+. .+..+++...+|.-+++-+.. +..+..+...
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~ 356 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFD 356 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCC
Confidence 344444332222244555556552 332223333233366667776 334555555666655544432 2233333311
Q ss_pred CCCCCccEEEEe--CCCC-EEEEEEC---CCcEEEEEcCCC
Q 001343 627 GGLPNLPRLRFS--KEGN-LLAVTTA---DNGFKILANAIG 661 (1096)
Q Consensus 627 ~~~~~v~~~~~s--~~~~-~l~~~~~---dg~i~iwd~~~~ 661 (1096)
.. ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 357 ~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 357 DP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 11 122223344 3333 4444333 356888887765
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.19 Score=54.78 Aligned_cols=145 Identities=12% Similarity=0.192 Sum_probs=99.0
Q ss_pred CCCcEEEEec--CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCc-------EEEEeeCCCeEEEEeeccceeeeee
Q 001343 841 KNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-------IIAIGTEDSTIHIYNVRVDELCVWS 911 (1096)
Q Consensus 841 ~dg~~la~~~--dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~-------~l~s~~~dg~i~iw~~~~~~~~~w~ 911 (1096)
.+..+|.... ...++=.|+..|+.+..++-|.. |+-+.+.| +.+ .-+.|-.|+.|+-||.+-..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~----- 415 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQG----- 415 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccC-----
Confidence 3444544433 36799999999999999987776 77778877 443 23456678888888876432
Q ss_pred ccccccccceeeecCCCCCC---CCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCc
Q 001343 912 IDTWEKRKSVTIHIPAGKTP---TGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 988 (1096)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~---~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 988 (1096)
...+....+|.. ....|.+-..+|..++.+.+|.|++||- .+..-++..++ +..+|..+..+.||+
T Consensus 416 --------~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg--LG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 416 --------KNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPG--LGDAIKHVDVTADGK 484 (644)
T ss_pred --------cceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccc--cCCceeeEEeeccCc
Confidence 001222222222 2456666677775555589999999998 66666666666 389999999999999
Q ss_pred EEEEEecCCcEEEEec
Q 001343 989 LVFATFCDGNIGVFDA 1004 (1096)
Q Consensus 989 ~la~~~~dg~i~vwd~ 1004 (1096)
+|+ |..+..+.+-++
T Consensus 485 wil-~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 485 WIL-ATCKTYLLLIDT 499 (644)
T ss_pred EEE-EecccEEEEEEE
Confidence 988 444556666664
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.022 Score=63.16 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=75.8
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEE-EEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT-TMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
..+.-+.|+|.. .++|.+..+|.+.+..++ .+.+..+..++..++ +++|.|||+.+++|-. +|+|++.|..+
T Consensus 21 ~~i~~~ewnP~~--dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k----dG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKM--DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK----DGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCcc--chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec----CCeEEEEEccC
Confidence 346778888865 589999999999998887 777778887777777 9999999999999998 99999999999
Q ss_pred CeeeEEEcCcCccceEEEEEe
Q 001343 574 GTIKRTYAGFRKKSNGVVQFD 594 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~ 594 (1096)
+..+..+.......+.++.|+
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred CCceeccccccccchheeecc
Confidence 988877543333466667775
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.17 Score=43.57 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=63.5
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCe
Q 001343 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1096)
Q Consensus 350 v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~ 429 (1096)
+.|..||..-|++|+.|..|+||+-. +.+.+ + .-.+.|+++.-... ..++.+..+|+
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E-------------------i-~e~~~v~~L~~~~~-~~F~Y~l~NGT 64 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGD--EIVAE-------------------I-TETDKVTSLCSLGG-GRFAYALANGT 64 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCC--cEEEE-------------------E-ecccceEEEEEcCC-CEEEEEecCCE
Confidence 34455666679999999999999954 33321 1 13457888877766 66888999999
Q ss_pred EEEEEccCCCccccceeecccccCEEEEEEec---CCCcEEEEEEeCCCcEE
Q 001343 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 430 i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~---d~~~~~l~s~s~d~~i~ 478 (1096)
|-+|+-.. +..+ .+ .+..++++.+.. ||.. -|++|=.+|.|-
T Consensus 65 VGvY~~~~-RlWR----iK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 65 VGVYDRSQ-RLWR----IK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EEEEeCcc-eeee----ec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99997533 1121 22 223366665543 3433 588888788764
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.13 E-value=3.2 Score=46.68 Aligned_cols=149 Identities=11% Similarity=0.060 Sum_probs=81.5
Q ss_pred CcEEEEEEcCCC-----CEEEEEeeccCCCCeEEEEeCC-----CCeeeEEEcCcCccc----eEEEEEeCCCCEEEEEE
Q 001343 539 HWCTTMLYSADG-----SRLFSCGTSKDGDSFLVEWNES-----EGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVG 604 (1096)
Q Consensus 539 ~~i~~l~~s~~~-----~~l~~~~~~~~~~~~i~iwd~~-----~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~ 604 (1096)
..|..+.|.|-+ .+|++-. ...|.+|.+. +.+.+..-..+-... ...+.|+|....+++-.
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQH-----kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQH-----KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEec-----cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 358889998853 2444443 7899999875 233333222221111 12377999988887766
Q ss_pred cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC-CcEEEEEcCCCccccccccCCCcccccCcceeE
Q 001343 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1096)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1096)
....-.++++......-..... ..+.|.|.+|.+||+.|+++-.. =.-++||-.. +.+.......-....+.|.++
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q--KtL~~CsfcPVFdv~~~Icsi 208 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ--KTLHRCSFCPVFDVGGYICSI 208 (671)
T ss_pred cCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch--hhhhhCCcceeecCCCceEEE
Confidence 5544456666543333333322 23479999999999887766543 2356776432 233333322222223345555
Q ss_pred EeecCCCeEEec
Q 001343 684 ALKVSASSAVSS 695 (1096)
Q Consensus 684 ~~s~~g~~lv~~ 695 (1096)
.-.-|....+++
T Consensus 209 ~AT~dsqVAvaT 220 (671)
T PF15390_consen 209 EATVDSQVAVAT 220 (671)
T ss_pred EEeccceEEEEe
Confidence 444444444443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.088 Score=62.34 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=76.9
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
.+..++.|+..|.|-..|+.+. ++....-..-.++|++++|+.+|. .++.|-.+|.|.+|| ..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567888999999988888764 221111223467999999999999 899999999999999 88899999988888
Q ss_pred CeEEEEeee-cCCCcEEEEEECCCeEEEEEc
Q 001343 496 PVYSICPHH-KENIQFIFSTAIDGKIKAWLY 525 (1096)
Q Consensus 496 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~ 525 (1096)
+.+++-++. .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877765543 233446788877776 5654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.6 Score=40.32 Aligned_cols=103 Identities=8% Similarity=0.053 Sum_probs=61.8
Q ss_pred eEEEEeeec-CC-CcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 497 VYSICPHHK-EN-IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 497 v~~~~~~~~-~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
|+++++..- ++ .+.|++|+.|..||+|+- .+.+..+. ....|.+++-...++ ++.+.. +|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~-F~Y~l~----NGTVGvY~~~-- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGR-FAYALA----NGTVGVYDRS-- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCE-EEEEec----CCEEEEEeCc--
Confidence 566665442 22 258999999999999953 34444443 345688888777755 555544 8899988753
Q ss_pred eeeEEEcCcCccceEEEEEeCCC---CEEEEEEcCCeEE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIK 610 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~ 610 (1096)
..+-..+..+. ++....+..++ ..|++|-.+|.|-
T Consensus 72 ~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22223333222 33333444333 3688888888764
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.029 Score=40.08 Aligned_cols=34 Identities=29% Similarity=0.588 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCe
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~ 379 (1096)
...|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999999 8999999999999998 5553
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.63 Score=54.93 Aligned_cols=196 Identities=12% Similarity=0.101 Sum_probs=103.0
Q ss_pred CCCcEEEEec-C------CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC-----eEEEEeeccceee
Q 001343 841 KNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDELC 908 (1096)
Q Consensus 841 ~dg~~la~~~-d------g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg-----~i~iw~~~~~~~~ 908 (1096)
-++.+.+.|+ + ..+..||..+......-.-....-...+..- ++++.+.||.++ ++..||..+++
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~-- 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDK-- 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-CCEEEEECCcCCCCCCceEEEEECCCCe--
Confidence 3677777776 3 2378889877654222111111111122233 688889998764 47788887765
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eec-----------------------ceEEEEEccccee
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE-----------------------TQLAIYDASKMER 964 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d-----------------------~~i~iwd~~~~~~ 964 (1096)
|.. +..+..... ....+ .-+|+..+. |.+ ..+..||..+.+-
T Consensus 379 -W~~----------~~~mp~~r~-~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W 444 (557)
T PHA02713 379 -WKM----------LPDMPIALS-SYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW 444 (557)
T ss_pred -EEE----------CCCCCcccc-cccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence 432 111111111 11122 235666666 332 2477888876542
Q ss_pred --ccccccCCCCCCCceEEEEeeCCcEEEEEecCC------cEEEEecCC-CceeEEEccccccCCCccCCCccccceEE
Q 001343 965 --IRQWTPQDALSAPISCAVYSCNSQLVFATFCDG------NIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1035 (1096)
Q Consensus 965 --~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~h~~~v~s~~l 1035 (1096)
+..+... ....-+..-+|++.++|+.++ .|..||.++ .+-...-. .|.. . ... .+
T Consensus 445 ~~v~~m~~~-----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~----m~~~----r-~~~--~~ 508 (557)
T PHA02713 445 ETLPNFWTG-----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT----TESR----L-SAL--HT 508 (557)
T ss_pred eecCCCCcc-----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc----cCcc----c-ccc--ee
Confidence 2333221 112222345778777787542 467899887 55322111 1111 0 111 22
Q ss_pred EecCCCCceEEEEeeCC--cEEEEccCCCCCccccCCCCC
Q 001343 1036 AAHPLEPNQFAIGLTDG--SVKVMEPSESEGKWGVSPPVD 1073 (1096)
Q Consensus 1036 ~~s~~d~~~l~s~~~dg--~i~vW~v~~~~~~~~~~~~~~ 1073 (1096)
+.. ++...++|+.|| ++..||+.+ .+|..-.|-.
T Consensus 509 ~~~--~~~iyv~Gg~~~~~~~e~yd~~~--~~W~~~~~~~ 544 (557)
T PHA02713 509 ILH--DNTIMMLHCYESYMLQDTFNVYT--YEWNHICHQH 544 (557)
T ss_pred EEE--CCEEEEEeeecceeehhhcCccc--ccccchhhhc
Confidence 332 689999999998 788888776 5566554443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.86 E-value=4 Score=45.48 Aligned_cols=278 Identities=10% Similarity=0.138 Sum_probs=145.7
Q ss_pred cCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-----CCCEEEEEECC
Q 001343 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGNYVGVAFTK 427 (1096)
Q Consensus 353 sp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----d~~~l~s~~~d 427 (1096)
+++++..+++||..|.++||+...+..... .+ . +-..-+.+|..+..-+ +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~l----------l----lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DL----------L----LETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc-cE----------E----EEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 344445799999999999999855442111 00 0 0111245677776542 3345555 456
Q ss_pred CeEEEEEccCCCcc------ccceeeccccc--CEEEEEEecC----CCcEEEEEEeCCCcEEEEEcCCceEEE-eeC--
Q 001343 428 HLIQLYSYAGSNDL------RQHSQIDAHVG--AVNDLAFAYP----NKLLCVVTCGDDKLIKVWELSGRKLFN-FEG-- 492 (1096)
Q Consensus 428 g~i~vwd~~~~~~~------~~~~~l~~h~~--~v~~l~~s~d----~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~-- 492 (1096)
..+.||.+...... ..+..+..|.- ....++.-|- ++. +|+.=+-||.+.+++.+.-.... +.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 78888887422111 11112223332 2333333332 223 78888999999999955444333 322
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCC--------------------e---eeEEeCCCC--cEEEEEEc
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--------------------S---RVDYDAPGH--WCTTMLYS 547 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------~---~~~~~~~~~--~i~~l~~s 547 (1096)
..+| +++.+.. +.+++++.+..+..|....-. . .+.+..... .|..+.++
T Consensus 176 lPgP---l~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGP---LCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcC---eEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 2333 4454443 478888888888888653100 0 011211111 23334444
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC----CC---CEEEEEEcCCeEEEEeCCCCeEE
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT----TQ---NHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
.....+++-+ +..+.+.+. +|......+- ...+...+.|.. .+ ..+++++.++.+.||.=. +++
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~ 321 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLV 321 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEE
Confidence 3444455444 677877775 4544433332 121222222222 22 248889999999999743 344
Q ss_pred EEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.........-.+.-..|..-...|++-+.+|.+.+-=+-+.
T Consensus 322 WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 322 WSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 43333221111222223334568888889999988766655
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.86 E-value=3.6 Score=44.98 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=36.0
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEEE-EeecCCCC-CCccEEEEeCCCCEEEEEECCCcEE
Q 001343 597 QNHFLAVGEDSQIKFWDMDNVNILT-STDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
+.++++.-..+.|....++.+..+. ........ ..+..+++.|||.++++...+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3455555556788888887553332 22212222 2688999999999998888888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.85 E-value=1 Score=45.90 Aligned_cols=200 Identities=14% Similarity=0.122 Sum_probs=106.5
Q ss_pred CcccEEEEEEecCCceEEEeecCC--eEEEeeccCCccCCCCceeeecCccccccCcccccc-ccccCCCcCCCeeeeee
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSNG--VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA-NDVAGVNLEEAVPCIAL 839 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg--~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~-~~~~g~~~~~~v~~l~~ 839 (1096)
...-...+.|..+|..+-+++.-| .++.++ +.+|+... ..++ ...--..+++
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d----------------------~~tg~~~~~~~l~---~~~FgEGit~ 97 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVD----------------------LETGKVLQSVPLP---PRYFGEGITI 97 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEE----------------------TTTSSEEEEEE-T---TT--EEEEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEE----------------------CCCCcEEEEEECC---ccccceeEEE
Confidence 334566788888887666666655 444444 44444322 1222 2222334555
Q ss_pred cCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeecccccccc
Q 001343 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRK 919 (1096)
Q Consensus 840 s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~ 919 (1096)
-.|.=+..|=-++...+||..+.+.+.++.-. +.-+.++ . |++.|+.......+.++|..+-+
T Consensus 98 ~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~------------- 160 (264)
T PF05096_consen 98 LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--S-DGKRLIMSDGSSRLYFLDPETFK------------- 160 (264)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--E-CSSCEEEE-SSSEEEEE-TTT-S-------------
T ss_pred ECCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--c-CCCEEEEECCccceEEECCcccc-------------
Confidence 44433333444799999999999999988543 4667777 3 56667766666677777765543
Q ss_pred ceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcE
Q 001343 920 SVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 999 (1096)
Q Consensus 920 ~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i 999 (1096)
.+. .|.|.+ .+.. -..+.-+.+- +|...|-.-....|
T Consensus 161 -------------~~~-----------------~i~V~~--~g~p----------v~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 161 -------------EVR-----------------TIQVTD--NGRP----------VSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp -------------EEE-----------------EEE-EE--TTEE-------------EEEEEEE-TTEEEEEETTSSEE
T ss_pred -------------eEE-----------------EEEEEE--CCEE----------CCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 111 122211 1121 1223344442 77777777777788
Q ss_pred EEEecCCCceeEEEccccccCCCcc--CC--CccccceEEEecCCCCceEEEE
Q 001343 1000 GVFDADTLRLRCYIAPSTYLSPSVL--NG--SQTVYPLVVAAHPLEPNQFAIG 1048 (1096)
Q Consensus 1000 ~vwd~~~~~~~~~~~~~~~~~~~~~--~h--~~~v~s~~l~~s~~d~~~l~s~ 1048 (1096)
...|..+|++...+......+.... .+ ...|.- .|||.|..+++++||
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN-GIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN-GIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE-EEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE-eEeEeCCCCEEEEEe
Confidence 8899999997776654333221000 01 123554 799998556666665
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.82 E-value=6.3 Score=47.48 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=66.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCC---C-cEEEEEEeCCCcEEEEE-cC
Q 001343 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN---K-LLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~---~-~~~l~s~s~d~~i~iwd-~~ 483 (1096)
|.+.+.+ .+.++.+-.+|.+..+....+..+..+.+-..-...|.|+++.++. + .-+++.++.|+++++.. ..
T Consensus 542 Iv~~avn--r~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 542 IVKCAVN--RRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred EEEEeec--ceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 4444443 3456666667777666654333333221222345678999998875 1 11689999999999999 55
Q ss_pred CceEEEe--eCCCCCeEEEEeeecCC-C------cEEEEEECCCeEEEE
Q 001343 484 GRKLFNF--EGHEAPVYSICPHHKEN-I------QFIFSTAIDGKIKAW 523 (1096)
Q Consensus 484 ~~~~~~~--~~~~~~v~~~~~~~~~~-~------~~l~s~~~dg~i~iw 523 (1096)
..++..+ ++-..++.++++-...+ + -+|.+|-.+|.+.-+
T Consensus 620 ~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 620 SDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred cceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 5555544 44555666655543221 1 256677777766544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.76 Score=54.25 Aligned_cols=150 Identities=7% Similarity=0.018 Sum_probs=76.3
Q ss_pred CCcEEEEEECCC-----eEEEEEcCCCCeeeEEeCCCC--cEEEEEEcCCCCEEEEEeeccC------------------
Q 001343 507 NIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKD------------------ 561 (1096)
Q Consensus 507 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~~~~------------------ 561 (1096)
++.+.+.||.++ ++..||..+..-...-..... ....+ .-+|+..+.||.+..
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence 456777887764 477888775432221111111 11122 235666666664211
Q ss_pred -CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC------CeEEEEeCCC-CeEEEEeecCCCCCCcc
Q 001343 562 -GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDN-VNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 562 -~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~ 633 (1096)
.-..+..||..+.+-...-.-... ........-++...+.||.+ ..+..||..+ .+...............
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 023577888877654332211111 11111122345666666643 2467899887 55443332222211222
Q ss_pred EEEEeCCCCEEEEEECCC--cEEEEEcCCC
Q 001343 634 RLRFSKEGNLLAVTTADN--GFKILANAIG 661 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg--~i~iwd~~~~ 661 (1096)
.+++ ++.+.++|+.++ .+..||..++
T Consensus 508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 508 TILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred eEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 2222 778899999888 6677777665
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=6.9 Score=47.57 Aligned_cols=242 Identities=10% Similarity=0.047 Sum_probs=118.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC----eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.+..+.+||||++++.+...+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 5778899999995443333333 688999988764321 0111 11459999999987
Q ss_pred EEEECC------CeEEEEEccCCCccccceeecccccCEE-EEEEecCCCcEEEEEEe--CCCcEEEEE--c-CCceEEE
Q 001343 422 GVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVN-DLAFAYPNKLLCVVTCG--DDKLIKVWE--L-SGRKLFN 489 (1096)
Q Consensus 422 ~s~~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v~-~l~~s~d~~~~~l~s~s--~d~~i~iwd--~-~~~~~~~ 489 (1096)
+....+ ..|..+++.++..-... .+........ .+..+.|++.+ ++.+. .++.+.+++ . .+.....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l-~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYV-VIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEE-EEEEECCccccEEEEECcCCCCCceEE
Confidence 766542 36777888877221111 2333233333 33334477753 33322 235788888 2 3432222
Q ss_pred eeCCCCCeEEEEeeecCCCcEEEEEEC---CCeEEEEEcCCCCeeeEEeCC-C-CcEEEEEEcCCCCEEEEEeeccCCCC
Q 001343 490 FEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAP-G-HWCTTMLYSADGSRLFSCGTSKDGDS 564 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~-~-~~i~~l~~s~~~~~l~~~~~~~~~~~ 564 (1096)
+.........+. +. .+.+++.... ...|...++........+..+ . ..+..+.+. ++.|+.... .++..
T Consensus 265 ~~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~ 338 (686)
T PRK10115 265 LPRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLT 338 (686)
T ss_pred EECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEE
Confidence 222222222222 22 2233333322 223433344422222233333 2 367777776 335554432 22344
Q ss_pred eEEEEeCCCCeeeEEEc-CcCccceEEEEEe--CCCC-EEEEEE---cCCeEEEEeCCCCe
Q 001343 565 FLVEWNESEGTIKRTYA-GFRKKSNGVVQFD--TTQN-HFLAVG---EDSQIKFWDMDNVN 618 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 618 (1096)
.+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 339 ~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 339 SLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 56667765433 33333 2111 22223333 3333 343333 45678899988765
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.4 Score=46.00 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=91.5
Q ss_pred CeeeeeecCCCcEEEEec--CCe--EEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEe-ecccee
Q 001343 833 AVPCIALSKNDSYVMSAT--GGK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN-VRVDEL 907 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~--dg~--v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~-~~~~~~ 907 (1096)
.+.+.++|+||+.+|... ++. +.++.. +.....+. ....++...|++ ++...++...+...+++. -..+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 688899999999887766 444 555553 33333321 223788889999 787777777777777764 223320
Q ss_pred eeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-E---ecceEEEEEcc---cc--eec-cccccCCCCCCC
Q 001343 908 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V---HETQLAIYDAS---KM--ERI-RQWTPQDALSAP 977 (1096)
Q Consensus 908 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~---~d~~i~iwd~~---~~--~~~-~~~~~~~~~~~~ 977 (1096)
....+...... ..|..+.+||||..+|. . .++.|.+--+. .+ ..+ ....-.......
T Consensus 101 -----------~~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~ 167 (253)
T PF10647_consen 101 -----------EPVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD 167 (253)
T ss_pred -----------eeEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc
Confidence 01112222211 16899999999999998 3 26788877663 33 111 111111011567
Q ss_pred ceEEEEeeCCcEEEEEecCCc
Q 001343 978 ISCAVYSCNSQLVFATFCDGN 998 (1096)
Q Consensus 978 i~~l~~s~dg~~la~~~~dg~ 998 (1096)
+..++|.+++.+++.+...+.
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCC
Confidence 899999999998776665443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.36 Score=57.51 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=70.3
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
++|.|+..|.|...|+...-... .| -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 68888899999988876532100 00 1224679999999999999999999999999999998
Q ss_pred CccccceeecccccCEE---EEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 439 NDLRQHSQIDAHVGAVN---DLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~~v~---~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.++. +..|..+.+ .+.+..++. .++++...|. +|.
T Consensus 163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWK 201 (1206)
T ss_pred cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEE
Confidence 88774 333444443 444455555 6788777776 666
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.2 Score=41.75 Aligned_cols=143 Identities=12% Similarity=0.065 Sum_probs=80.6
Q ss_pred ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC--------CeEEEEeeecCCCcEEEEEECCCeEE
Q 001343 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA--------PVYSICPHHKENIQFIFSTAIDGKIK 521 (1096)
Q Consensus 451 ~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (1096)
+...+.-..+|+|+ ++ .|.....=.... ..|..-.-+.+|.- --+.++|..+ ...+.++-+.+-+|.
T Consensus 108 knR~NDgkvdP~Gr--yy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YY-GGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--ee-eeeeccccccccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEEe
Confidence 34566677889998 43 332111111222 22222222233322 2245566532 223455666777887
Q ss_pred EEEcC--CC-----CeeeEEeC----CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEE
Q 001343 522 AWLYD--TM-----GSRVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1096)
Q Consensus 522 iwd~~--~~-----~~~~~~~~----~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~ 590 (1096)
-||.+ ++ +.+..+.. .....-.+++..+|+..+++-. .+.|...|..+|+.+.++.-... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 88844 22 22222221 1112345566678888777775 88999999999999999988876 7888
Q ss_pred EEEeCC-CCEEEE
Q 001343 591 VQFDTT-QNHFLA 602 (1096)
Q Consensus 591 ~~~~~~-~~~l~~ 602 (1096)
++|... -..+++
T Consensus 259 ccFgGkn~d~~yv 271 (310)
T KOG4499|consen 259 CCFGGKNLDILYV 271 (310)
T ss_pred EEecCCCccEEEE
Confidence 888653 234443
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.48 E-value=3.3 Score=50.35 Aligned_cols=203 Identities=10% Similarity=0.081 Sum_probs=115.9
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeeccccc------CEEEEEEec----------------CCCcEEEEEEeCCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG------AVNDLAFAY----------------PNKLLCVVTCGDDK 475 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~------~v~~l~~s~----------------d~~~~~l~s~s~d~ 475 (1096)
+..|..++.++.|.-.|..+|+.+-+.. ...... ....+.+.. .+. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d-~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFD-PKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEc-CCCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 4566666777777777877776553221 111000 012233321 233 577788899
Q ss_pred cEEEEE-cCCceEEEeeCCCCCeE-------------EEEeeecCCCcEEEEEEC----------CCeEEEEEcCCCCee
Q 001343 476 LIKVWE-LSGRKLFNFEGHEAPVY-------------SICPHHKENIQFIFSTAI----------DGKIKAWLYDTMGSR 531 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~ 531 (1096)
.+.-.| .+|+.+..+.. .+.|. .+.-.|.-.+..+++|+. +|.|+-+|.++++..
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999 99999877632 11110 000001101235666643 689999999999988
Q ss_pred eEEeCCC---------C--------cE-EEEEEcCCCCEEEEEeec--------------cCCCCeEEEEeCCCCeeeEE
Q 001343 532 VDYDAPG---------H--------WC-TTMLYSADGSRLFSCGTS--------------KDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 532 ~~~~~~~---------~--------~i-~~l~~s~~~~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~ 579 (1096)
..+.... + .+ ..+++.+....++....+ ..-.+.|.-.|.++|+..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 7664310 0 11 234555555555442210 11245677888889988877
Q ss_pred EcC-cCc-------cceEEEEEeC-CCC---EEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 580 YAG-FRK-------KSNGVVQFDT-TQN---HFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 580 ~~~-~~~-------~~i~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
++. |++ .....+.+.. +|+ .++.++.+|.++++|.++|+.+...+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 765 221 0111122322 443 68888899999999999998887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.055 Score=38.65 Aligned_cols=31 Identities=19% Similarity=0.461 Sum_probs=28.6
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~ 436 (1096)
...|.+++|+|...+||.|+.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.44 E-value=4.3 Score=44.45 Aligned_cols=206 Identities=15% Similarity=0.124 Sum_probs=88.9
Q ss_pred CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc-cCCCCEEEEEEcCCCCEEEEEE--C----C
Q 001343 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAF--T----K 427 (1096)
Q Consensus 355 ~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spd~~~l~s~~--~----d 427 (1096)
+.++|++-|-..+.|.|.|+.+.-..-. -.|+.+.. .+.. ..-+.-..+.--|+|+.++++- . .
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~-l~KvIe~~--------ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPR-LHKVIEPE--------EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-E-EEEEE-HH--------HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCc-eEeeeCHH--------HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 3454444444788999999985321100 01111100 0010 0011122233346888888762 2 2
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe--------------------CCCcEEEEE-cCCce
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--------------------DDKLIKVWE-LSGRK 486 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s--------------------~d~~i~iwd-~~~~~ 486 (1096)
|-+.+.|-++.+....-..-.+...--+.+-|.|..+ .++|.. ...++.+|| .+.+.
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 4677787776543331111111223346677788776 777764 246899999 88888
Q ss_pred EEEeeCCCC--CeEEEEeeecCCCcEEEEEE-CCCeEEEEEc-CCCC----eeeEEeCC-----------------CCcE
Q 001343 487 LFNFEGHEA--PVYSICPHHKENIQFIFSTA-IDGKIKAWLY-DTMG----SRVDYDAP-----------------GHWC 541 (1096)
Q Consensus 487 ~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~-~~~~----~~~~~~~~-----------------~~~i 541 (1096)
++++.--.. ....+.|...++..+=++++ -..+|..|-- +.++ .+..+... ..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 888764332 34567776666555444433 3444444432 2221 11111110 2347
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
+.+.+|.|.++|..... ..|.|+.||+...
T Consensus 315 tDI~iSlDDrfLYvs~W---~~GdvrqYDISDP 344 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNW---LHGDVRQYDISDP 344 (461)
T ss_dssp --EEE-TTS-EEEEEET---TTTEEEEEE-SST
T ss_pred EeEEEccCCCEEEEEcc---cCCcEEEEecCCC
Confidence 89999999999998776 5899999999763
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.7 Score=44.38 Aligned_cols=122 Identities=13% Similarity=0.140 Sum_probs=86.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 001343 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 536 ~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
+....+.++.|+|+.+.|++... ...-.++=...|+.++++.-..-.....+.+..++.++++--.++.++++.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n----~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTN----KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccceeeCCCcceEEEecC----CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 33446999999999999998875 45555555677899988765433345557888888777777788999999887
Q ss_pred CCeEEEE-----ee--cC-CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 616 NVNILTS-----TD--AE-GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 616 ~~~~~~~-----~~--~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
....+.. +. .. ......-.++|.|....|..+-.-.-+.||....+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 6532211 11 11 11335778999999988888888888888887643
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.43 E-value=3.8 Score=42.30 Aligned_cols=231 Identities=13% Similarity=0.056 Sum_probs=120.9
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCC------CccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEe
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAI------GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~ 704 (1096)
.-+.|+++|.+.+.++....+...+||... ...+.-.+...........++.+.|+....+.++....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~------ 97 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI------ 97 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc------
Confidence 357899999999999888889999999862 11222233322222223345667776655554333210
Q ss_pred ccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecC--CceEEEEcCCCCCCcccEEEEEEec--CCceEE
Q 001343 705 RSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS--GQCRLVTMPESTDTSSKVVRLLYTN--SAVGLL 780 (1096)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~s~--~~~~l~ 780 (1096)
.-...++.+++||+|.-|...-.... .... .+.. .....--..+++.. .+..|.
T Consensus 98 -------------------~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~--~~d~-s~~gavYkGLAi~~~~~~~~LY 155 (336)
T TIGR03118 98 -------------------TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEI--VVDA-SQQGNVYKGLAVGPTGGGDYLY 155 (336)
T ss_pred -------------------ccceeEEEEeCCceEEeecCcCCcccccccEE--EEcc-CCCcceeeeeEEeecCCCceEE
Confidence 00123567788899999985421110 1111 1211 00111223444443 345555
Q ss_pred Eeec-CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeee---------eeecCCCcEEEEec
Q 001343 781 ALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC---------IALSKNDSYVMSAT 850 (1096)
Q Consensus 781 ~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~---------l~~s~dg~~la~~~ 850 (1096)
++.- +++|.+||-........+... |+ .++...-...|.. ..-.++++.=+.+.
T Consensus 156 aadF~~g~IDVFd~~f~~~~~~g~F~--------DP--------~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~ 219 (336)
T TIGR03118 156 AANFRQGRIDVFKGSFRPPPLPGSFI--------DP--------ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGA 219 (336)
T ss_pred EeccCCCceEEecCccccccCCCCcc--------CC--------CCCCCCCCcceEEECCeEEEEEEecCCcccccccCC
Confidence 5544 788888875433221111110 00 0110000111111 11122222111222
Q ss_pred -CCeEEEEEcccceEEEeec--CCCCCeeEEEEecC-----CCcEEEEeeCCCeEEEEeeccce
Q 001343 851 -GGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQ-----DNNIIAIGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 851 -dg~v~iwd~~~~~~~~~~~--~h~~~i~~l~~s~~-----d~~~l~s~~~dg~i~iw~~~~~~ 906 (1096)
-|.|-+||. +|++++++. +.-..-+.|+..|. .+.+|+--..||+|..+|..++.
T Consensus 220 G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 220 GLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 367999997 788888874 33345667777552 46688877889999999998877
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.88 E-value=5.3 Score=40.94 Aligned_cols=185 Identities=8% Similarity=0.034 Sum_probs=113.3
Q ss_pred CCCEEEEEEcCCCCEEEEEECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
..-...+.|..+|.++-+.+.-| .|+.+|+.+|+..+.. .+.. .----.++...| + +..-.=.++...+|| .
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-~l~~-~~FgEGit~~~d-~--l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-PLPP-RYFGEGITILGD-K--LYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-E-TT-T--EEEEEEETT-E--EEEEESSSSEEEEEETT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-ECCc-cccceeEEEECC-E--EEEEEecCCeEEEEccc
Confidence 34466788878888888877766 7999999998766532 2221 112233444422 2 333344578899999 7
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC--CC---cEEEEEEcCCCCEEEEEe
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GH---WCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~---~i~~l~~s~~~~~l~~~~ 557 (1096)
+-+.+.++.- .+.=+.++. +++.|+.......++++|..+.+....+... +. .++.+.+- +|. +.+.-
T Consensus 119 tl~~~~~~~y-~~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANV 191 (264)
T PF05096_consen 119 TLKKIGTFPY-PGEGWGLTS----DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANV 191 (264)
T ss_dssp TTEEEEEEE--SSS--EEEE----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEE
T ss_pred cceEEEEEec-CCcceEEEc----CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEe
Confidence 7888887763 345567763 5567777777889999998887766554432 22 45667775 454 43332
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcC-----------c---CccceEEEEEeCCCCEEEEEEc
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAG-----------F---RKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~-----------~---~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
. ....|...|..+|+.+..+.. . .....+.+++.|..+.+++.|.
T Consensus 192 W---~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 192 W---QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp T---TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred C---CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 2 267888899999998887631 0 1236888999998877777664
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.031 Score=54.24 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=53.5
Q ss_pred EEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-CcEEE
Q 001343 467 CVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTT 543 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~ 543 (1096)
.++.|+.+|.|.+|+ ..|.....+..-...|-++... ..++.+..+++.||.||.|++...+..-....|+ .++..
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~-~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN-GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceecccc-ccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 588899999999998 3444333333333344443322 3345688899999999999988776665555555 23333
Q ss_pred EEEcCCCCEEEE
Q 001343 544 MLYSADGSRLFS 555 (1096)
Q Consensus 544 l~~s~~~~~l~~ 555 (1096)
...+..++++..
T Consensus 151 ~ivv~sd~~i~~ 162 (238)
T KOG2444|consen 151 LIVVGSDEFLKI 162 (238)
T ss_pred eEEecCCceEEe
Confidence 333333333333
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.69 E-value=8.8 Score=46.78 Aligned_cols=195 Identities=12% Similarity=0.117 Sum_probs=114.1
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCCC--------eEEEEeee--------------cCCCcEEEEEECCCeEEEE
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP--------VYSICPHH--------------KENIQFIFSTAIDGKIKAW 523 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~--------v~~~~~~~--------------~~~~~~l~s~~~dg~i~iw 523 (1096)
.++.++.++.|.-.| .+|+.+.++...... ...+.+.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 466667777788888 778777666432110 11222221 1123478889999999999
Q ss_pred EcCCCCeeeEEeCCCCcE-------------EEEEEcC--CCCEEEEEeeccC------CCCeEEEEeCCCCeeeEEEcC
Q 001343 524 LYDTMGSRVDYDAPGHWC-------------TTMLYSA--DGSRLFSCGTSKD------GDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 524 d~~~~~~~~~~~~~~~~i-------------~~l~~s~--~~~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
|.++++....+..... + ..+.-.| .+..+++++...+ ..+.|+-+|.++|+.+-.+..
T Consensus 276 DA~TGk~~W~fg~~G~-vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 276 DADTGKLCEDFGNNGT-VDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred ECCCCCEEEEecCCCc-eeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 9999888876532211 1 0111111 1335555543222 268899999999998877652
Q ss_pred cC---------c--------cceEEEEEeCCCCEEEEEE------------------cCCeEEEEeCCCCeEEEEeecCC
Q 001343 583 FR---------K--------KSNGVVQFDTTQNHFLAVG------------------EDSQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 583 ~~---------~--------~~i~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~ 627 (1096)
-. + ..-...++++....++.+. ..+.|.-.|.++|+....++...
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~ 434 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVH 434 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccC
Confidence 10 0 0112345555555554422 23567778888998887776532
Q ss_pred CC-------CCccEEEEeC-CCC---EEEEEECCCcEEEEEcCCCc
Q 001343 628 GL-------PNLPRLRFSK-EGN---LLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 628 ~~-------~~v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~ 662 (1096)
|. ....-+.+.. +|+ .++.++.+|.+.++|..+|+
T Consensus 435 hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 435 HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 21 0111122322 553 78899999999999999983
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.62 E-value=2.9 Score=50.34 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=53.0
Q ss_pred cCCCeeeeeecCCCcEEEEecCCeEEEEEccc----------ceE--E-Eee--------cCCCCCeeEEEEecC--CCc
Q 001343 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMT----------FKV--M-TTF--------MSPPPASTFLAFHPQ--DNN 886 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~----------~~~--~-~~~--------~~h~~~i~~l~~s~~--d~~ 886 (1096)
....|..+.++|+|++||..+...|.|..+.. |+. . +++ ..+...|..+.|+|. ++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 45689999999999999999876655555521 111 1 111 133456788999883 257
Q ss_pred EEEEeeCCCeEEEEeeccce
Q 001343 887 IIAIGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 887 ~l~s~~~dg~i~iw~~~~~~ 906 (1096)
.|++-+.|+++|+||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888999999999986433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.59 E-value=7.5 Score=41.32 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=82.4
Q ss_pred cCCCeeeeeecCCCcEEEEecCCeE-EEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 830 LEEAVPCIALSKNDSYVMSATGGKI-SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~~la~~~dg~v-~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
....+..+..++||++++++..|.+ .-||--...-...-+.-...|..|.|.| ++.+.+.+ ..|.|+.=+..... -
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~-~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG-E 219 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE-E
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc-c
Confidence 3466888899999999999997764 5677422112222223457899999999 77665544 88888877622211 1
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCc
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 988 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 988 (1096)
.|... +....... -.+..+++.+++...|++..+.| +...+.|+.=..........+..+.+.|.++.+
T Consensus 220 ~w~~~---------~~~~~~~~-~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 220 TWSEP---------IIPIKTNG-YGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp EE------------B-TTSS---S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred ccccc---------cCCcccCc-eeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc
Confidence 22211 11111111 15789999999998888877755 445555654333322111266788999987766
Q ss_pred EEEEEecCCcEEEE
Q 001343 989 LVFATFCDGNIGVF 1002 (1096)
Q Consensus 989 ~la~~~~dg~i~vw 1002 (1096)
-++ .+.+|.+.-|
T Consensus 289 gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 289 GFV-LGQDGVLLRY 301 (302)
T ss_dssp EEE-E-STTEEEEE
T ss_pred eEE-ECCCcEEEEe
Confidence 666 5567766544
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.96 Score=52.59 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=75.1
Q ss_pred CEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC----
Q 001343 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD---- 526 (1096)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---- 526 (1096)
...-+.-+.-++ ..+.-+...++.||| ..+.....-. ...+.|.++.|...++++.+++.|..+.|.++.-.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444444455 344444556899999 6555433322 35788999999999999999999999999998532
Q ss_pred -CCC----eee--EEeC-CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 527 -TMG----SRV--DYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 527 -~~~----~~~--~~~~-~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
... .+. .+.. ..++|.+..|.++|..++.+ ++.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s------GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS------GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe------CCEEEEECC
Confidence 111 111 1222 33689999999999888776 457888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=6.9 Score=46.23 Aligned_cols=233 Identities=12% Similarity=0.055 Sum_probs=113.8
Q ss_pred EEEEEeCC------CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC-----
Q 001343 359 LLLVGSSN------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----- 427 (1096)
Q Consensus 359 llasg~~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d----- 427 (1096)
+++.|+.+ ..|..+|..+++-..-.. +. +...-.+++.. ++...++||.|
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEEE-CCEEEEEccccCCCcc
Confidence 67777776 378888888775432100 11 11123333333 45777888888
Q ss_pred -CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC-----cEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 428 -HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 428 -g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~-----~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
.++..||..+++-.. ...+...........+ +|. +.|.||.|| +|-.|| .+.+- ........+....
T Consensus 348 l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~--iYavGG~dg~~~l~svE~YDp~~~~W-~~va~m~~~r~~~ 421 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGK--LYAVGGFDGEKSLNSVECYDPVTNKW-TPVAPMLTRRSGH 421 (571)
T ss_pred cceEEEecCCCCceec-cCCccCccccceeEEE--CCE--EEEEeccccccccccEEEecCCCCcc-cccCCCCcceeee
Confidence 357788887765222 1122222222222222 455 778888886 466777 33322 1111121122222
Q ss_pred EeeecCCCcEEEEEECCC------eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc-CCCCeEEEEeCCC
Q 001343 501 CPHHKENIQFIFSTAIDG------KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESE 573 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~-~~~~~i~iwd~~~ 573 (1096)
....- +|.+.++||.++ ++..||..+..-...-.........-...-++...+.||.+. .....+..||..+
T Consensus 422 gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 422 GVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred EEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCC
Confidence 22111 567788888654 456777766544332222211111112223555666666422 1123477788877
Q ss_pred CeeeEEE--cCcCccceEEEEEeCCCCEEEEEEcCC-----eEEEEeCCCCeEE
Q 001343 574 GTIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNIL 620 (1096)
Q Consensus 574 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 620 (1096)
.+....- ..... ....+. -++...++|+.|| +|..||..+.+..
T Consensus 501 ~~W~~v~~m~~~rs-~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 501 NQWTMVAPMTSPRS-AVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred CceeEcccCccccc-cccEEE--ECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 6554431 11111 222122 2456667777665 4666666655443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.17 Score=49.35 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=57.8
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE-EEcCCCCEEEEEECCCeEEEEEccC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV-AWSPDGNYVGVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~spd~~~l~s~~~dg~i~vwd~~~ 437 (1096)
-+++|+.+|.|.+|++........ ....-...|.++ .--.++.+..+++.||.|+.|++.-
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSD------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred eEEeecccceEEEecCCccchHHH------------------hhhcccccceeccccccccceeEEeccCCceeeecccc
Confidence 388899999999999862211110 011122233333 3334667889999999999999987
Q ss_pred CCccccceeecccc-cCEEEEEEecCCCcEEEEEE--eCCCcEEEEE
Q 001343 438 SNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE 481 (1096)
Q Consensus 438 ~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~--s~d~~i~iwd 481 (1096)
++.+. ....|. .++.....+..++ .++.. |.|..++.|+
T Consensus 134 ~k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 134 NKVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWN 175 (238)
T ss_pred Cceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcc
Confidence 66554 233455 3444444443444 34444 4555555555
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.88 E-value=13 Score=44.98 Aligned_cols=98 Identities=7% Similarity=0.119 Sum_probs=58.3
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
.-.|..|.++|+|++||..|..|. .|..+-.. ......+.+-...|.|=.+.=+.. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~---~~~--------------- 142 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRR--WGKNGEFEDGKKEINCRTVPVDER---FFT--------------- 142 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccc--cCccccccCCCcceeEEEEEechh---hcc---------------
Confidence 457999999999999999888654 44443210 000001222233343333332222 111
Q ss_pred eEEEeeCCCCCeEEEEeeecC-CCcEEEEEECCCeEEEEEcCCCC
Q 001343 486 KLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMG 529 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 529 (1096)
..+...|..+.|||.. ++..|++-..|+++|+||+....
T Consensus 143 -----~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 143 -----SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -----CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1234557788898864 45788888999999999987543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=93.80 E-value=12 Score=40.83 Aligned_cols=188 Identities=14% Similarity=0.165 Sum_probs=107.5
Q ss_pred EEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeee--cCCCcE--EEEEE-CC---CeEEEEEcCCCCe-eeEEeC-
Q 001343 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH--KENIQF--IFSTA-ID---GKIKAWLYDTMGS-RVDYDA- 536 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~--l~s~~-~d---g~i~iwd~~~~~~-~~~~~~- 536 (1096)
+++....++-+.+||..|+.+..+. .+.++.+.... .-+|+. |+.++ .+ .+|++|.++.... +..+..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 6777888899999999999998885 34566554321 112222 34443 22 4799998874322 222221
Q ss_pred ------CCCcEEEEEE--cC-CCCEEEEEeeccCCCCeEEEEeCC---CC----eeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 537 ------PGHWCTTMLY--SA-DGSRLFSCGTSKDGDSFLVEWNES---EG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 537 ------~~~~i~~l~~--s~-~~~~l~~~~~~~~~~~~i~iwd~~---~~----~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
....++.+|+ ++ +|.+.+.... .+|.+..|.+. .+ +.++.|.... .+..|........|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 1124667776 33 4554444332 16777766653 33 4678887654 57778888888899
Q ss_pred EEEEcCCeEEEEeCCC-----CeEEEEeecCCCCCCccEEEEeC--CC--CEEEEEECCCcEEEEEcCCC
Q 001343 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSK--EG--NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s~--~~--~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.+-++.-|.-|+.+. +..+.......-...|-.++.-. ++ .+|++.-.+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998888888763 22333333322334566777643 33 34444445788999997654
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=13 Score=40.75 Aligned_cols=156 Identities=12% Similarity=0.055 Sum_probs=92.3
Q ss_pred CCCeeeeeecCCCcEEEEecCCeEEEE-Ecccce-EEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 831 EEAVPCIALSKNDSYVMSATGGKISLF-NMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 831 ~~~v~~l~~s~dg~~la~~~dg~v~iw-d~~~~~-~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
...+.++.+.|++.+++++..|.+..- +- .++ -...-..-...++++.+.+ +++.+++| ..|.+++=.-+.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~-- 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLE-- 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCC--
Confidence 456788999999999988888876532 21 222 2222223446788999999 78776654 56765432233332
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCc
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 988 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 988 (1096)
.|.. +..+.......+..+.|.+++..++++.+|.+. ...+.|+.-...............+.|..+++
T Consensus 247 sW~~----------~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~ 315 (334)
T PRK13684 247 SWSK----------PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK 315 (334)
T ss_pred cccc----------ccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc
Confidence 2221 111111111157889999998888778877665 34555554333321111134577788877777
Q ss_pred EEEEEecCCcEEEEe
Q 001343 989 LVFATFCDGNIGVFD 1003 (1096)
Q Consensus 989 ~la~~~~dg~i~vwd 1003 (1096)
.++ .+..|.|..|+
T Consensus 316 ~~~-~G~~G~il~~~ 329 (334)
T PRK13684 316 GFV-LGQRGVLLRYV 329 (334)
T ss_pred eEE-ECCCceEEEec
Confidence 766 56677877775
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.71 E-value=10 Score=39.57 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=83.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.+...++|++|+.+.++...++.-.||-...+..... .+ ....+..-.|++++...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~------------------~~--~g~~l~~PS~d~~g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP------------------VL--TGGSLTRPSWDPDGWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee------------------ec--cCCccccccccCCCCEEEEEc
Confidence 7899999999996555553344333443333332211 02 223778889999988777776
Q ss_pred CCCeEEEEE-ccCCCccccceeecccccCEEEEEEecCCCcEEEEE-EeCCCcEEEEE----cCC------ceEEEeeCC
Q 001343 426 TKHLIQLYS-YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVWE----LSG------RKLFNFEGH 493 (1096)
Q Consensus 426 ~dg~i~vwd-~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s-~s~d~~i~iwd----~~~------~~~~~~~~~ 493 (1096)
.+...+++. ..++...........-.+.|..+.++|||.++.++. ...++.|.+=- ..+ ..+......
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 666666664 333332221111222222899999999999643333 12346666653 233 111222233
Q ss_pred CCCeEEEEeeecCCCcEEEEEECC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAID 517 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~d 517 (1096)
...+..+.|.. ++.+++.+...
T Consensus 165 ~~~v~~v~W~~--~~~L~V~~~~~ 186 (253)
T PF10647_consen 165 LSDVTDVAWSD--DSTLVVLGRSA 186 (253)
T ss_pred cCcceeeeecC--CCEEEEEeCCC
Confidence 56788999965 44555555443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=4.6 Score=47.97 Aligned_cols=194 Identities=8% Similarity=0.037 Sum_probs=97.6
Q ss_pred CCCcEEEEec-C------CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC-----eEEEEeeccceee
Q 001343 841 KNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDELC 908 (1096)
Q Consensus 841 ~dg~~la~~~-d------g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg-----~i~iw~~~~~~~~ 908 (1096)
.++.+++.|+ + ..+..||..+.+....-.-+......-+..- ++++++.||.++ .+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~-- 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESK-- 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCc--
Confidence 4666767765 2 1477888877665332111111111112233 677888888763 46677776654
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Ee--c----ceEEEEEcccceecc--ccccCCCCCCCce
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VH--E----TQLAIYDASKMERIR--QWTPQDALSAPIS 979 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~--d----~~i~iwd~~~~~~~~--~~~~~~~~~~~i~ 979 (1096)
|..- ..+..... . .++ ..-+++..+. |. + ..+..||..+.+-.. .+... . ..
T Consensus 370 -W~~~----------~~lp~~r~-~-~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~---r--~~ 430 (534)
T PHA03098 370 -WREE----------PPLIFPRY-N-PCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS---H--YG 430 (534)
T ss_pred -eeeC----------CCcCcCCc-c-ceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc---c--cC
Confidence 4321 11111110 1 112 2335666665 42 1 458899987665322 22111 1 11
Q ss_pred EEEEeeCCcEEEEEecCC--------cEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeC
Q 001343 980 CAVYSCNSQLVFATFCDG--------NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1051 (1096)
Q Consensus 980 ~l~~s~dg~~la~~~~dg--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~d 1051 (1096)
..+...++++.+.|+.++ .+.+||..+.+....-. .+.. + .-.+ .+.+ ++.+++.|+.+
T Consensus 431 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~~---r--~~~~-~~~~---~~~iyv~GG~~ 497 (534)
T PHA03098 431 GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS----LNFP---R--INAS-LCIF---NNKIYVVGGDK 497 (534)
T ss_pred ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC----CCcc---c--ccce-EEEE---CCEEEEEcCCc
Confidence 223345777777776432 37888988876432211 1111 0 1111 1222 57888888765
Q ss_pred -----CcEEEEccCCCCCccccCCC
Q 001343 1052 -----GSVKVMEPSESEGKWGVSPP 1071 (1096)
Q Consensus 1052 -----g~i~vW~v~~~~~~~~~~~~ 1071 (1096)
+.|.++|+.+ ..|...++
T Consensus 498 ~~~~~~~v~~yd~~~--~~W~~~~~ 520 (534)
T PHA03098 498 YEYYINEIEVYDDKT--NTWTLFCK 520 (534)
T ss_pred CCcccceeEEEeCCC--CEEEecCC
Confidence 4688888766 55765443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.57 E-value=10 Score=39.10 Aligned_cols=170 Identities=11% Similarity=0.099 Sum_probs=102.5
Q ss_pred ecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee--CCCCCeEEEEeeecCCCcEEEEEECCCeEEEE
Q 001343 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1096)
Q Consensus 447 l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 523 (1096)
+.+-...+.++.|+|+.+ .|++......-.||= .+|+.+.++. +... .-.+.+ -+++++.++--.++.+.++
T Consensus 81 i~g~~~nvS~LTynp~~r--tLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Iey--ig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTR--TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEY--IGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcc--eEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEE--ecCCEEEEEehhcceEEEE
Confidence 445566699999999999 666666666666766 9999998764 2221 233444 2366777777778888888
Q ss_pred EcCCCCeeeEE----------eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe---eeEEEcCcCc-----
Q 001343 524 LYDTMGSRVDY----------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRK----- 585 (1096)
Q Consensus 524 d~~~~~~~~~~----------~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~----- 585 (1096)
.++........ ...+...-.++|.|....++.+-. ..-+.|+...... .+.....+..
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE----r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE----RNPIGIFEVTQSPSSLSVHASLDPTADRDLF 231 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc----cCCcEEEEEecCCcccccccccCcccccceE
Confidence 77655333211 112446788999999888887754 3444444433221 1111111111
Q ss_pred -cceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 586 -KSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 586 -~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
..++.+.|++..+ .++-+.+++.+.-.|... ..+..+...
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~ 273 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG-EVIELLSLT 273 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCC-CeeeeEEec
Confidence 1455677877554 455566777787777654 445544433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.55 E-value=13 Score=43.29 Aligned_cols=200 Identities=10% Similarity=0.096 Sum_probs=101.2
Q ss_pred CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccce
Q 001343 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445 (1096)
Q Consensus 366 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 445 (1096)
--.|+|+++. |+.+.. ++-.|. .+..+.|+.+..+| +...+|++.||++-.. .+....
T Consensus 63 ~~~I~If~~s-G~lL~~------------------~~w~~~-~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge-~ie~~s 120 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGR------------------ILWKHG-ELIGMGWSDDEELI-CVQKDGTVHVYGLLGE-FIESNS 120 (829)
T ss_pred ceeEEEEecc-ccchHH------------------HHhcCC-CeeeecccCCceEE-EEeccceEEEeecchh-hhcccc
Confidence 4468888864 555432 122243 78899999776555 4668999999998642 222110
Q ss_pred -eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC---CCCCeEEEEee-ecCCCcEEEEEE-CCC
Q 001343 446 -QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG---HEAPVYSICPH-HKENIQFIFSTA-IDG 518 (1096)
Q Consensus 446 -~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~---~~~~v~~~~~~-~~~~~~~l~s~~-~dg 518 (1096)
-.......|..+.|...| ++.-..+|.+.+-+ .....++++.. ...+-.|.... +......++-.. ..|
T Consensus 121 vg~e~~~~~I~ec~~f~~G----Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~ 196 (829)
T KOG2280|consen 121 VGFESQMSDIVECRFFHNG----VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG 196 (829)
T ss_pred cccccccCceeEEEEecCc----eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh
Confidence 012233456666666555 33334456666655 33333333322 11111111111 111111111111 011
Q ss_pred eEEEEEcCCC-CeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC
Q 001343 519 KIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1096)
Q Consensus 519 ~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 596 (1096)
..++..+.. .....+......+..+.+||+.++|+.-.. .|.|.+-+....+....+..........++|..+
T Consensus 197 -~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~----~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 197 -LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE----TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred -hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec----CCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 011111111 111222333457888999999999998876 8888888877766666665332222223555443
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.55 E-value=12 Score=40.61 Aligned_cols=119 Identities=12% Similarity=0.186 Sum_probs=77.8
Q ss_pred eeecCCCCcceEEeec--CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDLPRTVAVSLH--QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~--h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
-|....+...+...+. .+++|.++.||+|.+ ++|+--.+.+|.+.+....+...... +..+.
T Consensus 47 gvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~ 110 (657)
T KOG2377|consen 47 GVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKT 110 (657)
T ss_pred EEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhcc
Confidence 4444443334444433 677999999999999 79999999999999985433321100 01223
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCc
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~ 465 (1096)
.+..|....|+.+ .-+|..... -+-+|-+...+ +..+..+.|+..|....|.++.+-
T Consensus 111 k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 111 KNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred CcceeEEEEEecC-eeEEEEecC-CeEEEEEchhh--hhhhhhhhcccCccEEEEccccce
Confidence 4556899999876 556655544 45667665432 222245678999999999999884
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.42 E-value=9.9 Score=38.55 Aligned_cols=242 Identities=12% Similarity=0.091 Sum_probs=134.1
Q ss_pred cCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCC
Q 001343 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS 801 (1096)
Q Consensus 722 ~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~ 801 (1096)
..+||..-.++...+.|--.|.. +++...+.+. .......+..-|||..-++-+..+..++
T Consensus 69 papdG~VWft~qg~gaiGhLdP~----tGev~~ypLg----~Ga~Phgiv~gpdg~~Witd~~~aI~R~----------- 129 (353)
T COG4257 69 PAPDGAVWFTAQGTGAIGHLDPA----TGEVETYPLG----SGASPHGIVVGPDGSAWITDTGLAIGRL----------- 129 (353)
T ss_pred cCCCCceEEecCccccceecCCC----CCceEEEecC----CCCCCceEEECCCCCeeEecCcceeEEe-----------
Confidence 34555555555544555444443 4555555543 3344556667777765555444422222
Q ss_pred CceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCC-CCeeEEEE
Q 001343 802 GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP-PASTFLAF 880 (1096)
Q Consensus 802 g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~-~~i~~l~~ 880 (1096)
+.++...-...+++...........|.+.|.+-+++..|.---.|- ....+.++.... ..-..|+.
T Consensus 130 ------------dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdP-a~~~i~vfpaPqG~gpyGi~a 196 (353)
T COG4257 130 ------------DPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDP-ARNVISVFPAPQGGGPYGICA 196 (353)
T ss_pred ------------cCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCc-ccCceeeeccCCCCCCcceEE
Confidence 2222222222233322355678899999999999987432111121 112233333222 34567888
Q ss_pred ecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEc
Q 001343 881 HPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDA 959 (1096)
Q Consensus 881 s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~ 959 (1096)
.| ||...++.-.+..|-.-|-.++. ...+..+++... ....+--+|.|+.-++ ...+.+.-+|-
T Consensus 197 tp-dGsvwyaslagnaiaridp~~~~-------------aev~p~P~~~~~-gsRriwsdpig~~wittwg~g~l~rfdP 261 (353)
T COG4257 197 TP-DGSVWYASLAGNAIARIDPFAGH-------------AEVVPQPNALKA-GSRRIWSDPIGRAWITTWGTGSLHRFDP 261 (353)
T ss_pred CC-CCcEEEEeccccceEEcccccCC-------------cceecCCCcccc-cccccccCccCcEEEeccCCceeeEeCc
Confidence 89 78877776666666666655543 223444444332 4555666788887777 56778888887
Q ss_pred ccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEE
Q 001343 960 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCY 1012 (1096)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~ 1012 (1096)
....-+.--.++. ...-.++.+...|+.-.+-..-|.|.-+|.++.++...
T Consensus 262 s~~sW~eypLPgs--~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~ 312 (353)
T COG4257 262 SVTSWIEYPLPGS--KARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVL 312 (353)
T ss_pred ccccceeeeCCCC--CCCcceeeeccCCcEEeeccccCceeecCcccceEEEe
Confidence 6554222212222 55566777777777666555667777777777665443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=3.7 Score=48.69 Aligned_cols=152 Identities=8% Similarity=-0.009 Sum_probs=71.5
Q ss_pred CCcEEEEEECC-----CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC--CCeEEEEeCCCCeeeEE
Q 001343 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG--DSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 507 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~ 579 (1096)
++.+++.||.+ ..+..||..+..-...-..........+..-+++..+.||....+ -..+..||..+.+....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45677777765 246667766543222111111111111122355666666532211 25688899887654332
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcC--------CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC-
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD- 650 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d- 650 (1096)
-......... .+...++..++.||.+ ..+.+||..+++....-...........+. -++.+++.|+.+
T Consensus 422 ~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~ 498 (534)
T PHA03098 422 SPLPISHYGG-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKY 498 (534)
T ss_pred CCCCccccCc-eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcC
Confidence 2111110111 1222345566666532 238889988776544322111111111222 266777777654
Q ss_pred ----CcEEEEEcCCC
Q 001343 651 ----NGFKILANAIG 661 (1096)
Q Consensus 651 ----g~i~iwd~~~~ 661 (1096)
+.+.+||..+.
T Consensus 499 ~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 499 EYYINEIEVYDDKTN 513 (534)
T ss_pred CcccceeEEEeCCCC
Confidence 35777777655
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.89 E-value=5.3 Score=38.59 Aligned_cols=184 Identities=13% Similarity=0.121 Sum_probs=97.9
Q ss_pred CCcEEEEec-C--CeEEEEEcccceEEEeecCCCCCee--EEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccc
Q 001343 842 NDSYVMSAT-G--GKISLFNMMTFKVMTTFMSPPPAST--FLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWE 916 (1096)
Q Consensus 842 dg~~la~~~-d--g~v~iwd~~~~~~~~~~~~h~~~i~--~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~ 916 (1096)
+|.++.+.+ - ..|++||+.+|+.+..-.-....+. .+.-. ...+..-.-.+|.-..+|..+-+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~---------- 122 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLE---------- 122 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhh----------
Confidence 556666665 2 4599999999988765432211221 11111 22233344467777888887765
Q ss_pred cccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccC-CC-CCCCceEEEEeeCCcEEEEE
Q 001343 917 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQ-DA-LSAPISCAVYSCNSQLVFAT 993 (1096)
Q Consensus 917 ~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-~~-~~~~i~~l~~s~dg~~la~~ 993 (1096)
++..+.-.. .=.. ...|++.|+. ....+++.-|.++.....++.-. .+ --..+..+.| -||...|-.
T Consensus 123 -----~lg~~~y~G--eGWg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANV 192 (262)
T COG3823 123 -----ELGRFSYEG--EGWG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANV 192 (262)
T ss_pred -----hhcccccCC--ccee--eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEee
Confidence 222211111 1122 2344554554 34456666666655544333210 00 0122333444 378888888
Q ss_pred ecCCcEEEEecCCCceeEEEccccccCCC-ccCCCccccceEEEecCCCCceEEEE
Q 001343 994 FCDGNIGVFDADTLRLRCYIAPSTYLSPS-VLNGSQTVYPLVVAAHPLEPNQFAIG 1048 (1096)
Q Consensus 994 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~s~~l~~s~~d~~~l~s~ 1048 (1096)
-.+..|...+.++|++...+.....++.. +......|.- .|++.|+.+++++||
T Consensus 193 w~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlN-GIA~~~~~~r~~iTG 247 (262)
T COG3823 193 WQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLN-GIAHDPQQDRFLITG 247 (262)
T ss_pred eeecceEEEcCCCCcEEEEEEccCCchhcCcccccccccc-ceeecCcCCeEEEec
Confidence 88888999999999988777644432211 1112222433 699999444666665
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=92.45 E-value=15 Score=38.14 Aligned_cols=228 Identities=13% Similarity=0.100 Sum_probs=126.0
Q ss_pred CEEEEEEecCCCcEEEEEEeCCCcEEEEEcC-----Cc---eEEEeeC-----CCCCeEEEEeeecCC----------Cc
Q 001343 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-----GR---KLFNFEG-----HEAPVYSICPHHKEN----------IQ 509 (1096)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~-----~~---~~~~~~~-----~~~~v~~~~~~~~~~----------~~ 509 (1096)
.-+.|+|+|.+. +-++...-+...+||.. +. .+.++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 458899999888 77777778899999933 21 1233321 223567777753211 12
Q ss_pred EEEEEECCCeEEEEEcCCCCe-----eeEEeCC-CC-cEEEEEEc--CCCCEEEEEeeccCCCCeEEEEeCCCCeee--E
Q 001343 510 FIFSTAIDGKIKAWLYDTMGS-----RVDYDAP-GH-WCTTMLYS--ADGSRLFSCGTSKDGDSFLVEWNESEGTIK--R 578 (1096)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~-~~-~i~~l~~s--~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~--~ 578 (1096)
.++.+++||+|.-|....... ...+... .. ....+++. ..+.+|..+.. ..++|.++|-.-.+.. .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 367889999999997432222 1222211 22 33445554 33567766644 2778888875422211 0
Q ss_pred EEcCcC---c-cceEE--------EEE---eCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC----
Q 001343 579 TYAGFR---K-KSNGV--------VQF---DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---- 639 (1096)
Q Consensus 579 ~~~~~~---~-~~i~~--------~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---- 639 (1096)
.|.... + .+... +.| .+++..=+.|..-|.|-+||. .+..++.+.........+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 011000 0 01111 111 111112222334578999997 577787776665555678888766
Q ss_pred --CCCEEEEEECCCcEEEEEcCCCccccccccCCC-cccccCcceeEEeec
Q 001343 640 --EGNLLAVTTADNGFKILANAIGLRSLRAVENPP-FEALRTPIESVALKV 687 (1096)
Q Consensus 640 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~ 687 (1096)
.+.+|+----||+|..||..++ +.+-.+.... ..+.....+.+.|..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeeecCCCCCeEEecCeEEeeeCC
Confidence 4567777777999999999888 3333333322 222223344555543
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.3 Score=56.68 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=75.0
Q ss_pred CCEEEEEEcC---CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEE-----------ecCCCcEEEEEEe
Q 001343 407 ISVSRVAWSP---DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-----------AYPNKLLCVVTCG 472 (1096)
Q Consensus 407 ~~V~~l~~sp---d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~-----------s~d~~~~~l~s~s 472 (1096)
..+.-|.|.| +.-++..+-.++.|++.++++... . .+.+|...+..++| +|||. .++.++
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~ 254 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAI 254 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEee
Confidence 3445556655 677888888889999988776433 1 24568877777664 78999 899999
Q ss_pred CCCcEEEEE--cCCc----eEEEeeCCCC-CeEEEEeeecCC-----C--cEEEEE-ECCCeEEEEEcCCCCee
Q 001343 473 DDKLIKVWE--LSGR----KLFNFEGHEA-PVYSICPHHKEN-----I--QFIFST-AIDGKIKAWLYDTMGSR 531 (1096)
Q Consensus 473 ~d~~i~iwd--~~~~----~~~~~~~~~~-~v~~~~~~~~~~-----~--~~l~s~-~~dg~i~iwd~~~~~~~ 531 (1096)
.||.++.|- ..|+ |+..++.|++ +-.|.-++.... + .+++++ ..+..+++|.-...++.
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999998887 5554 4566677763 333322322110 1 123333 34556888866555544
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.03 E-value=5.9 Score=46.33 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=73.4
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEe--CCCCEEEEEEcCCeEEEEeCC--
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD--TTQNHFLAVGEDSQIKFWDMD-- 615 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~iwd~~-- 615 (1096)
.+.-+.-|.-++..++-.. ...+.|||.+.+.....-.-.....|..+.|. |+++.+++.|..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~----~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSS----RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CcceEeecccCcEEEEECC----CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 3444445554554444332 67899999998876554433333477778775 688999999999999998642
Q ss_pred -------CCeEEEEeecCCCC-CCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 616 -------NVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 616 -------~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
+-..+..+...... .+|.+..|.++|.+++.++ +.+.|++-
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 11234444332222 3789999999998776554 46788764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.76 E-value=4.3 Score=43.79 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=92.8
Q ss_pred CcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCee-eeeecC
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP-CIALSK 841 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~-~l~~s~ 841 (1096)
....+..+-..|||+.+..-+. .++.++++........ . +-+...|. ....|+ .+..-.
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r--k-------l~~dspg~----------~~~~Vte~l~lL~ 278 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR--K-------LVDDSPGD----------SRHQVTEQLYLLS 278 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh--h-------hhhcCCCc----------hHHHHHHHHHHHh
Confidence 4567788889999997776666 5888888865433111 0 11111111 011222 222223
Q ss_pred CCcEEEEec-CCeEEEE-Ecccc-----eEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccc
Q 001343 842 NDSYVMSAT-GGKISLF-NMMTF-----KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDT 914 (1096)
Q Consensus 842 dg~~la~~~-dg~v~iw-d~~~~-----~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~ 914 (1096)
.|.-+.+++ ||.|.-| |++.+ ..++.++-....+..+.--. +.+-+++-..+|++.++.-...+..
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~l------ 351 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLL------ 351 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcce------
Confidence 444444444 7776666 44322 22333333333444443333 5566777788888887754433300
Q ss_pred cccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceecc
Q 001343 915 WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 966 (1096)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~ 966 (1096)
..+... .....+++||.+.+|++-..+.++++.+++...-.
T Consensus 352 -------L~~~~~----~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 352 -------LFERAY----QAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNPEI 392 (733)
T ss_pred -------ehhhhh----cCcceeeeCcccchheeecCCceEEEEecCCCCCc
Confidence 011111 15678999999999999888999999998665433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.12 E-value=21 Score=41.81 Aligned_cols=198 Identities=12% Similarity=0.078 Sum_probs=101.4
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEe----eCCCCCeEEEEee
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGHEAPVYSICPH 503 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~~~~~v~~~~~~ 503 (1096)
-.|+|++..+ ..+.. +.-..+.+..+.|+.+.. |+....||++++|+..|..+... ......|..+.+.
T Consensus 64 ~~I~If~~sG-~lL~~---~~w~~~~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLGR---ILWKHGELIGMGWSDDEE---LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFF 136 (829)
T ss_pred eeEEEEeccc-cchHH---HHhcCCCeeeecccCCce---EEEEeccceEEEeecchhhhcccccccccccCceeEEEEe
Confidence 4688888764 44443 222233889999998875 77788999999999777666542 2223334444433
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC-CCC--cEEEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGH--WCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~--~i~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
. +| ++.-..+|.+.+-+-........+.. +.. +..+-...+++. .++-... .. .-.+..-+..+.+..
T Consensus 137 ~--~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~-~v-~~~~~q~~~~~~q~~ 210 (829)
T KOG2280|consen 137 H--NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV-AV-GLHICQVEESRVQLH 210 (829)
T ss_pred c--Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech-hh-hhcccceeccccccc
Confidence 2 33 33444445554332111111111111 111 112222222221 1111100 00 000111111111111
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
. +..... .+.-+..+|+.++|+--..+|.|.+-+.+..+....+....+. ....++|..+.
T Consensus 211 ~-~~~~~~-~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 211 A-LSWPNS-SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred c-cCCCCc-eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 1 111112 5666889999999999999999999999888887777654432 23366665443
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.76 Score=31.80 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCC--cEEEEEeCCCeEEEEecCCC
Q 001343 345 STVISMDFHPSHQ--TLLLVGSSNGEITLWELAMR 377 (1096)
Q Consensus 345 ~~V~~v~fsp~g~--~llasg~~dg~I~iwd~~~~ 377 (1096)
++|.+++|||... -|||..-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999997543 47888878899999999853
|
It contains a characteristic DLL sequence motif. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=13 Score=41.53 Aligned_cols=153 Identities=8% Similarity=-0.008 Sum_probs=0.0
Q ss_pred CCeeeeeecCCCcEEEEecCCeEEEEEcccceE-EEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccc-----
Q 001343 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----- 905 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~-~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~----- 905 (1096)
+....+..++||.+++.+..|.+..=.-..... ...-......++++.|.+ ++.+++++ .+|.+..=+-...
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~S~d~G~~~~~~ 316 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYVSKGTGLTEEDF 316 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEEecCCCCccccc
Q ss_pred eeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEee
Q 001343 906 ELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 985 (1096)
Q Consensus 906 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~ 985 (1096)
+ ............+..+.|.+++..++++..|.+... .+.|+.-.............+.+.|.+
T Consensus 317 ~---------------f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~ 380 (398)
T PLN00033 317 D---------------FEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFD 380 (398)
T ss_pred c---------------eeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcC
Q ss_pred CCcEEEEEecCCcEEEEe
Q 001343 986 NSQLVFATFCDGNIGVFD 1003 (1096)
Q Consensus 986 dg~~la~~~~dg~i~vwd 1003 (1096)
+++.++ .+.+|.|.-|.
T Consensus 381 ~~~g~~-~G~~G~il~~~ 397 (398)
T PLN00033 381 DKKGFV-LGNDGVLLRYL 397 (398)
T ss_pred CCceEE-EeCCcEEEEeC
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=20 Score=41.74 Aligned_cols=185 Identities=7% Similarity=-0.017 Sum_probs=93.9
Q ss_pred CCCcEEEEec-C-----CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC--eEEEEeeccceeeeeec
Q 001343 841 KNDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDELCVWSI 912 (1096)
Q Consensus 841 ~dg~~la~~~-d-----g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg--~i~iw~~~~~~~~~w~~ 912 (1096)
.++.++++|+ + ..+..||..+.+....-.-+..........- ++++.++|+.++ ++..|+..+++ |.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~-~~~iYviGG~~~~~sve~ydp~~n~---W~- 344 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA-NNKLYVVGGLPNPTSVERWFHGDAA---WV- 344 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE-CCEEEEECCcCCCCceEEEECCCCe---EE-
Confidence 3566667776 2 2477888877654332211111111112234 688888888643 46677765544 32
Q ss_pred cccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eec---ceEEEEEcccceecc--ccccCCCCCCCceEEEEeeC
Q 001343 913 DTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE---TQLAIYDASKMERIR--QWTPQDALSAPISCAVYSCN 986 (1096)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d---~~i~iwd~~~~~~~~--~~~~~~~~~~~i~~l~~s~d 986 (1096)
.+..+... ........-+|+..+. |.+ ..+..||..+.+-.. .+... .. ...+..-+
T Consensus 345 ---------~~~~l~~~---r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~---r~--~~~~~~~~ 407 (480)
T PHA02790 345 ---------NMPSLLKP---RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP---HY--KSCALVFG 407 (480)
T ss_pred ---------ECCCCCCC---CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc---cc--cceEEEEC
Confidence 11122211 1111223346666666 433 357788887654322 12111 11 11223457
Q ss_pred CcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeC-----CcEEEEccCC
Q 001343 987 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSE 1061 (1096)
Q Consensus 987 g~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~d-----g~i~vW~v~~ 1061 (1096)
|++.+.|+ .+.+||.++.+-... .+ .+.. +.. . +++.. +++.+++||.+ ..|..||..+
T Consensus 408 ~~IYv~GG---~~e~ydp~~~~W~~~-~~---m~~~---r~~--~--~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 408 RRLFLVGR---NAEFYCESSNTWTLI-DD---PIYP---RDN--P--ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CEEEEECC---ceEEecCCCCcEeEc-CC---CCCC---ccc--c--EEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 77777774 578899887763322 11 1111 111 1 12322 68899998865 3588888876
Q ss_pred CC
Q 001343 1062 SE 1063 (1096)
Q Consensus 1062 ~~ 1063 (1096)
++
T Consensus 472 ~~ 473 (480)
T PHA02790 472 YS 473 (480)
T ss_pred Ce
Confidence 44
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.78 E-value=16 Score=43.34 Aligned_cols=115 Identities=8% Similarity=0.075 Sum_probs=75.3
Q ss_pred CEEEEEEcC--CCCEEEEEECCCeEEEEEccC-------C----------CccccceeecccccCEEEEEEe--cCCCcE
Q 001343 408 SVSRVAWSP--DGNYVGVAFTKHLIQLYSYAG-------S----------NDLRQHSQIDAHVGAVNDLAFA--YPNKLL 466 (1096)
Q Consensus 408 ~V~~l~~sp--d~~~l~s~~~dg~i~vwd~~~-------~----------~~~~~~~~l~~h~~~v~~l~~s--~d~~~~ 466 (1096)
.|+.|.... +...|+.|..||.|.+|.+++ . ..++....+. -...++++++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 466665544 566899999999999997631 0 0011122222 34578999998 6666
Q ss_pred EEEEEeCCCcEEEEE--cC-CceEE-EeeCCCCCeEEEEeeecCC---Cc-EEEEEECCCeEEEEEc
Q 001343 467 CVVTCGDDKLIKVWE--LS-GRKLF-NFEGHEAPVYSICPHHKEN---IQ-FIFSTAIDGKIKAWLY 525 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd--~~-~~~~~-~~~~~~~~v~~~~~~~~~~---~~-~l~s~~~dg~i~iwd~ 525 (1096)
+||.++....|.||- .. .+... .-..|...|.+|+|.+... |. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 788888888888886 21 22111 1112566788999977542 32 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.76 E-value=10 Score=34.17 Aligned_cols=117 Identities=14% Similarity=0.211 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeec---ccceeecccccCccccccccccCCCCEEEEEEcC-----CCC
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS---KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGN 419 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----d~~ 419 (1096)
..-+|..... -|++++.-|+|.|++......... ..++ +-.-...|++|+-.+ +..
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D 65 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRD 65 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcC
Confidence 4455666666 488888999999999765432211 0111 112344677775544 345
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC---CCcEEEEEEeCCCcEEEEEcCCceE
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCGDDKLIKVWELSGRKL 487 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d---~~~~~l~s~s~d~~i~iwd~~~~~~ 487 (1096)
.|+.|+. ..+..||+.....+. .+.-.+.|+++.+-.- .. -++..+.+..|.-+|.+|+.+
T Consensus 66 ~LliGt~-t~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~--~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 66 CLLIGTQ-TSLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPS--PLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred EEEEecc-ceEEEEEcccCchhh----hhhCccceeEEEEEecCCCCC--cEEEECceEEEEEeCCCCcEE
Confidence 6777765 589999999876654 2334567888777321 12 244444477888888666544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=90.62 E-value=6 Score=44.11 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCcEEEEEe-----------CCC-eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGS-----------SNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~-----------~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
.....|+|.++|+ ++++-. ..+ .|.+++-.++.-... +..++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---------------~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---------------KSNVFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---------------eeEEeecCCCCccce
Confidence 3568899999999 555432 223 777776543321110 001122233456789
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCC----ccccc-eeecc----cccCEEEEEEecCCCcEEEEEEe
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN----DLRQH-SQIDA----HVGAVNDLAFAYPNKLLCVVTCG 472 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~----~~~~~-~~l~~----h~~~v~~l~~s~d~~~~~l~s~s 472 (1096)
++.++| .++ +......++.|.+... ....+ ..+.. +......++|.|||. +.++-+
T Consensus 78 ~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~--LYv~~G 142 (367)
T TIGR02604 78 AVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW--LYFNHG 142 (367)
T ss_pred eEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC--EEEecc
Confidence 999998 444 4444333343543211 11111 11222 234578999999998 444433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=90.35 E-value=7.7 Score=43.25 Aligned_cols=150 Identities=11% Similarity=0.045 Sum_probs=82.1
Q ss_pred CeeeeeecCCCcEEEEec------------C-CeEEEEEccc--ce--EEEeecCCCCCeeEEEEecCCCcEEEEeeCCC
Q 001343 833 AVPCIALSKNDSYVMSAT------------G-GKISLFNMMT--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~------------d-g~v~iwd~~~--~~--~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg 895 (1096)
....|+|.++|+++++-. . +.|.+++-.+ |+ ....+.........+++.+ ++ +++ +....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCe
Confidence 456799999999887742 2 3787776543 32 2234444445568899999 77 444 44443
Q ss_pred eEEEEeeccceeeeeeccccccccceeeecCCCC---CCCCCceEEEecCCcEEEE-Eec-------------------c
Q 001343 896 TIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGK---TPTGDTRVQFNADQVRMLV-VHE-------------------T 952 (1096)
Q Consensus 896 ~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~v~~v~fs~dg~~l~~-~~d-------------------~ 952 (1096)
..++.+..... ..+. +....+..+... .......++|.|||.+.++ +.. +
T Consensus 92 i~~~~d~~gdg----~ad~---~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 92 ILFLRDKDGDD----KADG---EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred EEEEeCCCCCC----CCCC---ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCc
Confidence 22333433211 0000 011122222221 0125778999999988777 521 3
Q ss_pred eEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecC
Q 001343 953 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD 996 (1096)
Q Consensus 953 ~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d 996 (1096)
.+.-++.++++. ..+..+ -.....++|+++|+++++-..+
T Consensus 165 ~i~r~~pdg~~~-e~~a~G---~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 165 GLFRYNPDGGKL-RVVAHG---FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eEEEEecCCCeE-EEEecC---cCCCccceECCCCCEEEEccCC
Confidence 455555655443 222222 3445789999999988764433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=13 Score=43.10 Aligned_cols=148 Identities=11% Similarity=0.033 Sum_probs=69.9
Q ss_pred CCcEEEEEECCC--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC
Q 001343 507 NIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 507 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
++.+.+.||.++ .+..||..+.+-...-..........+..-+|+..+.||.+. ....+..||..+.+-...-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCC
Confidence 456777777543 466777654322211111111111122223566666666422 23467788887765443211111
Q ss_pred ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC-----CcEEEEEcC
Q 001343 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANA 659 (1096)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~ 659 (1096)
. .....+..-++...+.| |.+.+||..+++.............. +++ --++++.++||.+ ..+..||..
T Consensus 397 ~-r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 397 P-HYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred c-cccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECC
Confidence 1 11111122344444555 35778998877655433222211112 222 2366778888754 346667765
Q ss_pred CC
Q 001343 660 IG 661 (1096)
Q Consensus 660 ~~ 661 (1096)
++
T Consensus 471 ~~ 472 (480)
T PHA02790 471 TY 472 (480)
T ss_pred CC
Confidence 54
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=89.61 E-value=49 Score=38.87 Aligned_cols=241 Identities=17% Similarity=0.197 Sum_probs=103.4
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCC--Cccccceeec---ccccCEEEEEEec-----CCCcEEEEEEeCCCc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQID---AHVGAVNDLAFAY-----PNKLLCVVTCGDDKL 476 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~l~---~h~~~v~~l~~s~-----d~~~~~l~s~s~d~~ 476 (1096)
..-..++.+|.|+.++.+..++.+.|+.++.. ........+. ...+.|.+++|.. +...+.++-....+.
T Consensus 44 ~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~ 123 (504)
T PF10433_consen 44 QPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRR 123 (504)
T ss_dssp TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-E
T ss_pred cCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEeccc
Confidence 34567899999999999999999999998871 1111100111 1257789999986 222112222222222
Q ss_pred --EEE--EEcCCceEEEee----------CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC--C-eeeEEeCC--
Q 001343 477 --IKV--WELSGRKLFNFE----------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--G-SRVDYDAP-- 537 (1096)
Q Consensus 477 --i~i--wd~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~-~~~~~~~~-- 537 (1096)
+.. |+.......... .+..+ .-+...|.+.+- ++.++. +.+.+-+.... . ........
T Consensus 124 ~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p-~~LIPlp~~~gg-llV~~~-~~i~y~~~~~~~~~~~~~~~~~~~~ 200 (504)
T PF10433_consen 124 THLVTYEWSLDDGLNHVISKSTLPIRLPNEDELP-SFLIPLPNPPGG-LLVGGE-NIIIYKNHLIGSGDYSFLSIPSPPS 200 (504)
T ss_dssp EEEEEEE--------EETTTTEEEE--EEEE-TT-EEEEEE-TTT-S-EEEEES-SEEEEEE------TTEEEEE--H-H
T ss_pred ceeEEEeeecccccceeeeeccccccccccCCCc-cEEEEcCCCCcE-EEEECC-EEEEEecccccccccccccccCCcc
Confidence 222 441111111111 11222 222333343333 434433 33333322111 1 11122111
Q ss_pred --CCcEEEEE-------EcCCCCEEEEEeeccCCCCeEEEEeCCCCe--eeEEEcCcCccceEEEEEeCCC-CEEEEEEc
Q 001343 538 --GHWCTTML-------YSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGE 605 (1096)
Q Consensus 538 --~~~i~~l~-------~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~ 605 (1096)
..-+.+.. ...++..++.+.. +|.++...+.... .....-+.......++++-.++ .+++.|+.
T Consensus 201 ~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e----~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~ 276 (504)
T PF10433_consen 201 SSSSLWTSWARPERNISYDKDGDRILLQDE----DGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSE 276 (504)
T ss_dssp HHTS-EEEEEE------SSTTSSEEEEEET----TSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEES
T ss_pred CCCceEEEEEeccccceecCCCCEEEEEeC----CCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEe
Confidence 22233333 3456667777765 8888877665433 1111111101134445555444 47777774
Q ss_pred --CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC----CC------EEEEEE---CCCcEEEEE
Q 001343 606 --DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE----GN------LLAVTT---ADNGFKILA 657 (1096)
Q Consensus 606 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~------~l~~~~---~dg~i~iwd 657 (1096)
|+.+.-|....-+.+..+.. .++|.++++-+. .. .|++++ .+|.+++..
T Consensus 277 ~gds~l~~~~~~~l~~~~~~~N---~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 277 FGDSQLLQISLSNLEVLDSLPN---WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp SS-EEEEEEESESEEEEEEE-------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred cCCcEEEEEeCCCcEEEEeccC---cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 55666666444445555543 347888887531 11 455554 467788764
|
... |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=89.59 E-value=50 Score=38.95 Aligned_cols=167 Identities=12% Similarity=0.084 Sum_probs=89.1
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec-----CCCcEEEEEEe-CC--CcE
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-----PNKLLCVVTCG-DD--KLI 477 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-----d~~~~~l~s~s-~d--~~i 477 (1096)
.+.|..+.|.++++.+++...+|.|.+||...+........-..+...+..=+|-+ ++..++++.+. .+ -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 56899999999999999999999999999943322111000112333222223333 23332333333 12 245
Q ss_pred EEEEc--CCceEEEee---CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-----C-CcEEEEEE
Q 001343 478 KVWEL--SGRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-----G-HWCTTMLY 546 (1096)
Q Consensus 478 ~iwd~--~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~-~~i~~l~~ 546 (1096)
+++.. ++..+..+. .+........|... +|. |+-- .+++|.+|++...+........ . ..+.++..
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGK-LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEe-CCE-EEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 55554 444444443 22222333334333 333 2222 6789999998776655443322 1 23445544
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
-...+.|++. +..|++.|+.-...+.++.
T Consensus 286 ~s~nRvLLs~------~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 PSPNRVLLSV------NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCCeEEEEc------CCEEEEEeehhhhhhhhhh
Confidence 3333444444 7799999987655555544
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=89.31 E-value=33 Score=36.55 Aligned_cols=283 Identities=10% Similarity=0.074 Sum_probs=126.7
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
+.-...+..|+|..... -+|+| ..+. |+....|-.. |..... ..-..-.-...+|.|..+ .-
T Consensus 13 l~t~~~l~dV~F~d~~~-G~~VG-~~g~--il~T~DGG~t-------W~~~~~------~~~~~~~~~l~~I~f~~~-~g 74 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPNH-GWAVG-AYGT--ILKTTDGGKT-------WQPVSL------DLDNPFDYHLNSISFDGN-EG 74 (302)
T ss_dssp -S-SS-EEEEEESSSS--EEEEE-TTTE--EEEESSTTSS--------EE-----------S-----EEEEEEEETT-EE
T ss_pred cCCCCceEEEEEecCCE-EEEEe-cCCE--EEEECCCCcc-------cccccc------CCCccceeeEEEEEecCC-ce
Confidence 44456899999995555 56776 4454 3444443321 111000 000001224667787643 33
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceE-EEeeCCCCCeEE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYS 499 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~v~~ 499 (1096)
+++ +..+ +.+...+.|+....+..-..-.+....+....++. .++ .+..|.|+.=...|+.= .....-.+.+..
T Consensus 75 ~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~--~~l-~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~ 149 (302)
T PF14870_consen 75 WIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS--AEL-AGDRGAIYRTTDGGKTWQAVVSETSGSIND 149 (302)
T ss_dssp EEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE--EEE-EETT--EEEESSTTSSEEEEE-S----EEE
T ss_pred EEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc--EEE-EcCCCcEEEeCCCCCCeeEcccCCcceeEe
Confidence 444 4444 44455555655443211011233445555555554 333 34456554433334322 223334456777
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe-CCCCeeeE
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKR 578 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd-~~~~~~~~ 578 (1096)
+.. .++|.+++++..-....-||--...-..........|.+|.|+|++...+.+ . .+.|+.=+ ....+.-.
T Consensus 150 ~~r--~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~----Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 150 ITR--SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R----GGQIQFSDDPDDGETWS 222 (302)
T ss_dssp EEE---TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T----TTEEEEEE-TTEEEEE-
T ss_pred EEE--CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-C----CcEEEEccCCCCccccc
Confidence 665 4477777777665566677643222222333345689999999998876655 2 77777766 22222111
Q ss_pred E--EcC-cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec-CCCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 579 T--YAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 579 ~--~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
. ... .....+..++|.+++...++| ..|.+ +...+.|+.-+.... ..-...++.+.|.++. .-.+.+.+|.|.
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~g-g~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG~~G~ll 299 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVG-GSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLGQDGVLL 299 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEE-STT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE-STTEEE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEe-CCccE-EEeCCCCccceECccccCCCCceEEEEEcCCC-ceEEECCCcEEE
Confidence 1 111 122246778998886666655 45554 455666766655543 2222357888987654 444555777776
Q ss_pred EE
Q 001343 655 IL 656 (1096)
Q Consensus 655 iw 656 (1096)
-|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 55
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.99 E-value=23 Score=39.29 Aligned_cols=200 Identities=11% Similarity=0.086 Sum_probs=113.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE-cCCCCEEE-
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-SPDGNYVG- 422 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spd~~~l~- 422 (1096)
+.-..|.|-.+.. ++. .++.|-|+.......+. ..-.+.++.. ..|..-.+..+-. ..|..+|.
T Consensus 419 Ns~L~Vgfrn~rs-yVt---R~n~IGVFk~~de~~Le-F~aaiknvs~---------~~GKSidp~K~mlh~~dssli~~ 484 (776)
T COG5167 419 NSHLVVGFRNERS-YVT---RGNSIGVFKNTDEGSLE-FKAAIKNVSD---------DGGKSIDPEKIMLHDNDSSLIYL 484 (776)
T ss_pred CceEEEEEcccce-eEe---eCCeeeeEeccCCccee-hhhhhhhccC---------CCCCcCChhhceeecCCcceEEe
Confidence 3455666666554 232 57788888765443221 1111111111 1122222222222 33445544
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCc------EEEEEEeCCCcEEEEE--cCCceEEEeeC--
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL------LCVVTCGDDKLIKVWE--LSGRKLFNFEG-- 492 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~------~~l~s~s~d~~i~iwd--~~~~~~~~~~~-- 492 (1096)
.|+....++-.|++.|+.+. ++.-|... -+.|.|+.+. ..|+ |-.+..|.-.| ..|..+.....
T Consensus 485 dg~~~~kLykmDIErGkvve---eW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKd 558 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVE---EWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKD 558 (776)
T ss_pred cCCCcccceeeecccceeee---EeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehh
Confidence 34555677778888888776 45555554 5667664321 0344 44466666667 66755543321
Q ss_pred --CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 493 --HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 493 --~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
......+..- . ...++++++..|-|++||--.......+.+-+..|..+..+.+|+++++.+ ...+.+-|
T Consensus 559 Y~tKn~Fss~~t--T-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-----k~yllL~d 630 (776)
T COG5167 559 YKTKNKFSSGMT--T-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-----KNYLLLTD 630 (776)
T ss_pred cccccccccccc--c-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-----cceEEEEe
Confidence 1122233332 2 235999999999999998544444455666777899999999999988776 66777777
Q ss_pred CC
Q 001343 571 ES 572 (1096)
Q Consensus 571 ~~ 572 (1096)
+.
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 54
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=88.98 E-value=63 Score=41.96 Aligned_cols=148 Identities=12% Similarity=0.188 Sum_probs=83.2
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
|-..++.|.-+++|.+ +=. .|+.++.||..... |..- -..-...++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCe-EEe--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 5556777777888874 332 67788888876543 2210 011233455566555666665
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC--Cc----e--EEEeeCC
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS--GR----K--LFNFEGH 493 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~--~~----~--~~~~~~~ 493 (1096)
.++.. |-|+..+.... ..-..+.+...+++|.- .+.++.....+.+|+ .. +. + .-.+.+-
T Consensus 419 ---k~~~~-l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDDT-LVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCCc-eeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 22221 33554443221 12345777788899983 366666666779998 22 21 1 1222333
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (1096)
.....+|.+++ ..|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 33556666643 3688899999887766553
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.97 E-value=11 Score=36.66 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=81.2
Q ss_pred CCcEEEEEECCC--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC
Q 001343 507 NIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 507 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
+|.++.+.+.-| .|++||+.+++...........+..=-...-|..+..-.. .++.-..+|..+.+++..+....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 456677766544 6999999988887766554322222222222333333322 27788889998888887776543
Q ss_pred ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC---CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG---LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
. -..++ .++..++.+....++++-|.++.....++..... ...++.+.|- +|...|-.-.+..|...+..+|
T Consensus 132 e--GWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 132 E--GWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred c--ceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 3 22233 3555677776667888888776554443332111 1233444543 4555544433444444444444
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=88.72 E-value=46 Score=37.35 Aligned_cols=144 Identities=7% Similarity=-0.025 Sum_probs=88.3
Q ss_pred CCcEEEEEECCCeEEEEEcCCCCee----eEEeCCCCcEEEEEEcC-----CCCEEEEEeeccCCCCeEEEEeCCC--Ce
Q 001343 507 NIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSA-----DGSRLFSCGTSKDGDSFLVEWNESE--GT 575 (1096)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~l~~s~-----~~~~l~~~~~~~~~~~~i~iwd~~~--~~ 575 (1096)
+...|++|+..|.++||+....+.. ..-..-..+|..+..-+ +...|++-. ...+.+|.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLh-----P~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLH-----PRKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEec-----CCEEEEEEEEecCCC
Confidence 3468999999999999987543311 11112234666665432 233455543 67788887621 11
Q ss_pred -------eeEEEcCcC-ccceEEEEEeCC-----CCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC
Q 001343 576 -------IKRTYAGFR-KKSNGVVQFDTT-----QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 576 -------~~~~~~~~~-~~~i~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1096)
.+..+..|. ......+++.|- ..++.+-+.||.+.+|+-+.......+...- -.-.+.|.+...
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l---lPgPl~Y~~~tD 187 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL---LPGPLCYCPRTD 187 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC---CCcCeEEeecCC
Confidence 112222221 112333444432 2577888999999999987765555554422 345688999888
Q ss_pred EEEEEECCCcEEEEEc
Q 001343 643 LLAVTTADNGFKILAN 658 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~ 658 (1096)
.+++++.+..+..|..
T Consensus 188 sfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 188 SFVTASSSWTLECYKY 203 (418)
T ss_pred EEEEecCceeEEEecH
Confidence 9999999988888875
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=88.63 E-value=50 Score=37.74 Aligned_cols=113 Identities=9% Similarity=0.045 Sum_probs=64.1
Q ss_pred CCEEEEEEcCC----CCEEEEEECCCeEEEEEccCC-----Cccccc-eeecccccC--EEEEEEecCCCcEEEEEEeCC
Q 001343 407 ISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGS-----NDLRQH-SQIDAHVGA--VNDLAFAYPNKLLCVVTCGDD 474 (1096)
Q Consensus 407 ~~V~~l~~spd----~~~l~s~~~dg~i~vwd~~~~-----~~~~~~-~~l~~h~~~--v~~l~~s~d~~~~~l~s~s~d 474 (1096)
.-|..+.|.|- --.|.+......|.||.+.-. +.+... .++ +..-+ -..+.|+|... .|+.-...
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi-~e~~pvLpQGCVWHPk~~--iL~VLT~~ 133 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEI-REPFPVLPQGCVWHPKKA--ILTVLTAR 133 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeec-cCCcccCCCcccccCCCc--eEEEEecC
Confidence 45999999994 323444556679999998621 211110 011 01111 24688999988 55554444
Q ss_pred CcEEEEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEE
Q 001343 475 KLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWL 524 (1096)
Q Consensus 475 ~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd 524 (1096)
..-.+.+ .++..++.--...+.|.|.||.. ||+.|+++ +..=.-.+||
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~--DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTK--DGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecC--cCCEEEEEeCCeEEEEEec
Confidence 4444555 34444433334577899999976 56666554 3333456675
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.4 Score=30.51 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=27.4
Q ss_pred CCeeEEEEecCCC--cEEEEeeCCCeEEEEeeccc
Q 001343 873 PASTFLAFHPQDN--NIIAIGTEDSTIHIYNVRVD 905 (1096)
Q Consensus 873 ~~i~~l~~s~~d~--~~l~s~~~dg~i~iw~~~~~ 905 (1096)
+.+.++.|||+.+ .+|+.+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998444 68999989999999999853
|
It contains a characteristic DLL sequence motif. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.02 E-value=3.3 Score=40.23 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=25.5
Q ss_pred CCEEEEEEcCCC------CEEEEEECCCeEEEEEccC
Q 001343 407 ISVSRVAWSPDG------NYVGVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 407 ~~V~~l~~spd~------~~l~s~~~dg~i~vwd~~~ 437 (1096)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999943 4788889999999997654
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=87.67 E-value=52 Score=36.77 Aligned_cols=197 Identities=14% Similarity=0.046 Sum_probs=107.0
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC-Ce
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA-PV 497 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~-~v 497 (1096)
.+.++..+|.|.-.|.+++..+-..... +....+..-.+..+|+ |+.++.++.++..| .+|+.+........ .+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 4444567788888888877644221111 1112233333333675 77788899899999 58999888776551 11
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC---CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
..-.+ ..+ ..++.++.+|.+...|..++.......... ..+..-....++ .++.+..+ . ++.+.-.|..+|
T Consensus 146 ~~~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred ecCcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCC-C-cceEEEEEccCC
Confidence 11111 112 244555577888888888777776654432 111111112233 33333211 1 346777788888
Q ss_pred eeeEEEcCcCccceEE---EEEeC-----CCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 575 TIKRTYAGFRKKSNGV---VQFDT-----TQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~---~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
................ ..... .+..++.++.++.+...+..+++.+......
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7766543221101000 00000 1123456677888999999999998888754
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.59 E-value=48 Score=36.30 Aligned_cols=278 Identities=10% Similarity=0.052 Sum_probs=131.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...+.+|+|..... .+|+|. +|. ||...++-.. |...... +......+.++.|.++ ..+++
T Consensus 45 ~~~l~~v~F~d~~~-g~avG~-~G~--il~T~DgG~t-------W~~~~~~-------~~~~~~~l~~v~~~~~-~~~~~ 105 (334)
T PRK13684 45 EANLLDIAFTDPNH-GWLVGS-NRT--LLETNDGGET-------WEERSLD-------LPEENFRLISISFKGD-EGWIV 105 (334)
T ss_pred CCceEEEEEeCCCc-EEEEEC-CCE--EEEEcCCCCC-------ceECccC-------CcccccceeeeEEcCC-cEEEe
Confidence 45789999986655 577774 443 3444333211 1110000 1112234777888654 33443
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCCCeEEEEe
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICP 502 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~ 502 (1096)
+..+.|.. .-+.|+.......-....+....+....++. .+ .++..|.|..=+..|+.-..+. .-...+.++.+
T Consensus 106 -G~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~-~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~ 180 (334)
T PRK13684 106 -GQPSLLLH-TTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AE-MATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRR 180 (334)
T ss_pred -CCCceEEE-ECCCCCCCeEccCCcCCCCCceEEEEECCCc--ce-eeeccceEEEECCCCCCceeCcCCCcceEEEEEE
Confidence 34444322 2333443332110001111222222222232 23 3344555443333343322221 22445777777
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeee--EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
.+ ++.+ +..+..|.+..- .+...... ........+.++.+.++++.++++. .+.+++=....|..-...
T Consensus 181 ~~--~g~~-v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 181 SP--DGKY-VAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSKP 251 (334)
T ss_pred CC--CCeE-EEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCccccc
Confidence 55 4444 455556655421 12222211 2223345789999999998877764 555543223333321211
Q ss_pred cCc---CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec-CCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 581 AGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 581 ~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
..+ ....+..+.+.+++.. +.++.+|.+. ...+.++....... ..-....+.+.|..++..++ .+..|.|..|
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~ 328 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRY 328 (334)
T ss_pred cCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEe
Confidence 111 1124666888887664 4555667665 45555555544432 11112467778776666554 5566777766
Q ss_pred E
Q 001343 657 A 657 (1096)
Q Consensus 657 d 657 (1096)
+
T Consensus 329 ~ 329 (334)
T PRK13684 329 V 329 (334)
T ss_pred c
Confidence 5
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.27 E-value=59 Score=36.99 Aligned_cols=314 Identities=13% Similarity=0.074 Sum_probs=151.0
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.-...|.++.|...|. +-+|+.|| +..||..+++.+.... ......|..+..+-.|+.
T Consensus 162 l~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~L- 219 (671)
T COG3292 162 LKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGRL- 219 (671)
T ss_pred ccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCcE-
Confidence 3456899999999997 33455554 5667877777654200 001245666665555544
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEE-eeCCC--CCeE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHE--APVY 498 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~--~~v~ 498 (1096)
.+|+.+| |.+.+.++...... -..-..+.|..+.-..+|. +-.|+..|-.+.--........ .+-|. +.|.
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vn 293 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVN 293 (671)
T ss_pred EEEeccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCcccccc
Confidence 4465554 56666554211110 0011233344444333443 4445555543222222222111 12222 2334
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC--CCCEEEEEeeccCCCCeEEEEeCCCCee
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~--~~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1096)
++.. +.+| -+-+++.+|.+++-+-+-..........+..+...+..| .+..+-.... .+.+.+-+-.+|..
T Consensus 294 sL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~ 366 (671)
T COG3292 294 SLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGEL 366 (671)
T ss_pred ceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcE
Confidence 4433 3344 466777777666543221111111111122222222222 1111111111 34455566667777
Q ss_pred eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEE
Q 001343 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1096)
Q Consensus 577 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1096)
++....-.+..++..++.. +..+-.|+...-+-.|+..+ +.......+.. .+.|..+.=.|+++ |..|+.+|.++.
T Consensus 367 v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~-ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLP-SSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccCCc-ccceeeeeecCCCC-EEEeccCCeEec
Confidence 7776555555677777776 45566666665566677666 33333333322 33777888888888 778888887654
Q ss_pred EEcCCCccccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 656 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
+.+.+ +....+...........+..+.+.++|+.-++.
T Consensus 444 -~pe~~-~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~ 481 (671)
T COG3292 444 -DPESG-RVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAA 481 (671)
T ss_pred -Ccccc-chhcccccccCcCCcchhhhhccCCCCceEEEe
Confidence 33322 222222222222223335566777777665333
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.17 E-value=32 Score=38.15 Aligned_cols=153 Identities=8% Similarity=0.067 Sum_probs=90.9
Q ss_pred CEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecC------CCcEEEEEECCCeEEEEEc
Q 001343 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE------NIQFIFSTAIDGKIKAWLY 525 (1096)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~ 525 (1096)
.+..+....+...+++..|+....++-.| ..|+.+..+.-|... -+.+.|.. +.+.| +|-.+..|.-.|.
T Consensus 468 dp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDP 544 (776)
T COG5167 468 DPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDP 544 (776)
T ss_pred ChhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecc
Confidence 34444444445544666677777888888 889999999877765 34444432 12334 4444444444455
Q ss_pred CCCCeeeEEeCCCC-----cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 526 DTMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 526 ~~~~~~~~~~~~~~-----~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
+............. ...+..-. ...++++++. .|-|++||--.-+....+.+... .|..+..+.+|.++
T Consensus 545 R~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~i 618 (776)
T COG5167 545 RARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHI 618 (776)
T ss_pred cccCCceeeeeehhccccccccccccc-cCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEE
Confidence 54442222211111 22233322 3447888876 88999999654444445555555 77778899999998
Q ss_pred EEEEcCCeEEEEeCC
Q 001343 601 LAVGEDSQIKFWDMD 615 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~ 615 (1096)
++.+. ..+.+-|+.
T Consensus 619 laTCk-~yllL~d~~ 632 (776)
T COG5167 619 LATCK-NYLLLTDVP 632 (776)
T ss_pred EEeec-ceEEEEecc
Confidence 88775 366666654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=86.53 E-value=45 Score=38.71 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=44.7
Q ss_pred cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEE
Q 001343 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1096)
Q Consensus 450 h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (1096)
....++++.-+|.+. -++.++.||+|++++ ...+.- .+-....|-..+.|.. .-|++...|..+.-|.
T Consensus 13 ~~e~~~aiqshp~~~--s~v~~~~d~si~lfn~~~r~qs-ki~~~~~p~~nlv~tn----hgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQ--SFVLAHQDGSIILFNFIPRRQS-KICEEAKPKENLVFTN----HGLVTATSDRRALAWK 81 (1636)
T ss_pred ccceeeeeeecCCCc--eEEEEecCCcEEEEeecccchh-hhhhhcCCccceeeec----cceEEEeccchhheee
Confidence 455677888889888 799999999999999 433321 1111223334455532 2377788888887784
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.30 E-value=14 Score=45.27 Aligned_cols=102 Identities=13% Similarity=0.088 Sum_probs=64.4
Q ss_pred CCeeeeeecCCC--cEEEEecCCeEEEEEcccceE-EEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 832 EAVPCIALSKND--SYVMSATGGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 832 ~~v~~l~~s~dg--~~la~~~dg~v~iwd~~~~~~-~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
.-..++.|.|.= ..++.-.|+.|++..+.-... ...+ .-....++++|+| .|+.+++|...|++.-|...--.
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~lei-- 231 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEI-- 231 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEecc-ccceeeEecCCCeEEEeecccce--
Confidence 344566776653 334444478888877633222 2222 3356789999999 99999999999999888654321
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 948 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~ 948 (1096)
.+.+..+.......|.+|.|-....++++
T Consensus 232 -----------k~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 232 -----------KSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred -----------eecccCCCcCCCcceeEEEEecceeEEEE
Confidence 00111121111137899999888888887
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.91 E-value=2.8 Score=45.11 Aligned_cols=162 Identities=11% Similarity=0.055 Sum_probs=93.1
Q ss_pred cCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEE-EeecCC-CC----Cee-EEEEecCCCcEEEEeeCCCeEEEE-e
Q 001343 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVM-TTFMSP-PP----AST-FLAFHPQDNNIIAIGTEDSTIHIY-N 901 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~-~~~~~h-~~----~i~-~l~~s~~d~~~l~s~~~dg~i~iw-~ 901 (1096)
....+..+-..|||+++..-+...+.|+++.+...- +.+... .+ .|+ ++.... ++.-|.++..||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456788899999999999888888999988654331 122111 11 222 233344 68888999999999877 5
Q ss_pred eccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceE
Q 001343 902 VRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISC 980 (1096)
Q Consensus 902 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~ 980 (1096)
+..+. . .+-.-++.+.-.. .++.-+.--...+-+++ ...|++.++....-+.+-.-.. -..+..
T Consensus 298 vr~~~-------~---p~l~h~R~f~l~p-a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~----~~~~~~ 362 (733)
T COG4590 298 VRRDG-------Q---PHLNHIRNFKLAP-AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA----YQAPQL 362 (733)
T ss_pred eecCC-------C---CcceeeeccccCc-ccceeeccccccceEEEEcCCCceeeeecccCcceehhhh----hcCcce
Confidence 44332 0 0000111111100 12222222223344445 6677777766544333222111 346788
Q ss_pred EEEeeCCcEEEEEecCCcEEEEecCCCc
Q 001343 981 AVYSCNSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 981 l~~s~dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
+++||.+.++++ -..|.|+++.+++..
T Consensus 363 ~~~Sp~~~~Ll~-e~~gki~~~~l~Nr~ 389 (733)
T COG4590 363 VAMSPNQAYLLS-EDQGKIRLAQLENRN 389 (733)
T ss_pred eeeCcccchhee-ecCCceEEEEecCCC
Confidence 999999999984 455778988887643
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.88 E-value=7.3 Score=47.40 Aligned_cols=145 Identities=12% Similarity=0.006 Sum_probs=87.4
Q ss_pred CEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce-----EEEeeCC------CCCeEEEEeeecCCCcEEEEEECCCeE
Q 001343 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK-----LFNFEGH------EAPVYSICPHHKENIQFIFSTAIDGKI 520 (1096)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~-----~~~~~~~------~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (1096)
+|..+...+|+....++..+.+-.|..+| .+-.. ..-|..| .....++.|+|... ...++...|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 55666667777643455555555788888 32211 1111111 22344666776543 345677889999
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc---CccceEEEEEeCCC
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF---RKKSNGVVQFDTTQ 597 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~ 597 (1096)
++..+........--.-....++++|+|.|+.+++|-. .|.+.-|... ++....+.+. ....|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 88866533332222223346899999999999999876 8888877643 3444444332 22367888888777
Q ss_pred CEEEEE
Q 001343 598 NHFLAV 603 (1096)
Q Consensus 598 ~~l~~~ 603 (1096)
.++++-
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 776663
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.79 E-value=8.6 Score=47.81 Aligned_cols=166 Identities=14% Similarity=0.222 Sum_probs=93.4
Q ss_pred CcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 334 ~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
|.+++..+.|...=+.+-+-|.=.+.-+| .|+.+.+|+++++..... +.+-...|..|.
T Consensus 68 P~el~eq~~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~ 126 (1311)
T KOG1900|consen 68 PDELLEQFSNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAE-------------------YDGLSHTILKVG 126 (1311)
T ss_pred CHHHHHHhcCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCcccc-------------------ccchhhhheeee
Confidence 33334334444444444455543334554 699999999998655432 344444555554
Q ss_pred E--------cCCCCEEEEEECCCeEEEEEccCCCccccc------eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 414 W--------SPDGNYVGVAFTKHLIQLYSYAGSNDLRQH------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 414 ~--------spd~~~l~s~~~dg~i~vwd~~~~~~~~~~------~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
. -|.=+++.+-+.--.|.++-+.-.+..... ..+....-.|+|+....+|+ .++ +|.||. +
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg~--l 201 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDGN--L 201 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCCC--E
Confidence 3 223344444444456666654322211111 12333456788999888887 454 555664 4
Q ss_pred EE-----cCC---c-e----------------EEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC
Q 001343 480 WE-----LSG---R-K----------------LFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 480 wd-----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (1096)
|. .+| + + +-.+. .+..+|..+.+.. ....+.+-+..|+|++||+..
T Consensus 202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 43 111 1 1 11123 5677899998854 346888999999999999875
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=85.75 E-value=1e+02 Score=38.29 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=105.9
Q ss_pred cCCCeeeeeec---C----CCcEEEEecCCeEEEEEc------cc---------ceEEEeecCC---CCCeeEEEEecCC
Q 001343 830 LEEAVPCIALS---K----NDSYVMSATGGKISLFNM------MT---------FKVMTTFMSP---PPASTFLAFHPQD 884 (1096)
Q Consensus 830 ~~~~v~~l~~s---~----dg~~la~~~dg~v~iwd~------~~---------~~~~~~~~~h---~~~i~~l~~s~~d 884 (1096)
...+|..++|+ . ..++|++-....+.|+.. .. ...+..+..+ ..+...++|.|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46788888887 2 236888888888888872 11 1223333322 2356689999977
Q ss_pred CcEEEEeeCCCeEEEEeeccce---eeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEccc
Q 001343 885 NNIIAIGTEDSTIHIYNVRVDE---LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASK 961 (1096)
Q Consensus 885 ~~~l~s~~~dg~i~iw~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~ 961 (1096)
.+.+|+....|...||++.... ...|.+.... .+ .+ ..+....+....+.|.++-..|+++....+.++|+.+
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~--~g-si-~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNI--SG-SI-IFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCC--Cc-cc-cCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC
Confidence 8899999999999999993221 0111111000 00 01 0111111356688999999999998899999999998
Q ss_pred ceecc-ccccCCCCCCCceEEEEeeCC-cEEEEEecCCcEEEEecCC
Q 001343 962 MERIR-QWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 962 ~~~~~-~~~~~~~~~~~i~~l~~s~dg-~~la~~~~dg~i~vwd~~~ 1006 (1096)
..... ...... ...|..+.-+++. .++++- ....|...++..
T Consensus 234 ~~~~~~l~~~~~--~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKT--WSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCC--hhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 76533 222222 6778888888872 232222 335677777776
|
These proteins are found in fungi. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=85.57 E-value=4.8 Score=40.75 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=51.5
Q ss_pred EcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc-------cCCCCEEEEEEcCCCCEEEEE
Q 001343 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-------DVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 352 fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~spd~~~l~s~ 424 (1096)
+..++. +|.+-+.+|.+++||+.+++.+... +.+. .++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGS-YLLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCC-EEEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 445667 4666789999999999998876531 1111 1122 466789999999999888776
Q ss_pred ECCCeEEEEEccCC
Q 001343 425 FTKHLIQLYSYAGS 438 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~ 438 (1096)
+ +|....|+.+-+
T Consensus 85 s-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 85 S-NGDSYSYSPDLG 97 (219)
T ss_pred e-CCCEEEeccccc
Confidence 5 578888887653
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.94 E-value=13 Score=41.12 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=59.8
Q ss_pred CCCceEEEEeeCCcEEEEEecCCcEEEEe---------cCCCc--eeEEEcc---ccccCCCccCCCccccceEEEecCC
Q 001343 975 SAPISCAVYSCNSQLVFATFCDGNIGVFD---------ADTLR--LRCYIAP---STYLSPSVLNGSQTVYPLVVAAHPL 1040 (1096)
Q Consensus 975 ~~~i~~l~~s~dg~~la~~~~dg~i~vwd---------~~~~~--~~~~~~~---~~~~~~~~~~h~~~v~s~~l~~s~~ 1040 (1096)
.-.|..+..++.|..++-++.+|.+.++- +++|+ +.|+... .-|.... .-.+. .++|+|+
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~----~ltl~--Qa~WHP~ 176 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST----SLTLK--QAAWHPS 176 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC----ceeee--eccccCC
Confidence 45577788899999999999998655533 23454 4444321 1111111 12233 5789995
Q ss_pred C--CceEEEEeeCCcEEEEccCCCCCccccCCC
Q 001343 1041 E--PNQFAIGLTDGSVKVMEPSESEGKWGVSPP 1071 (1096)
Q Consensus 1041 d--~~~l~s~~~dg~i~vW~v~~~~~~~~~~~~ 1071 (1096)
. +..|+.-+.|+.|++|+.......|-.+.|
T Consensus 177 S~~D~hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 177 SILDPHLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred ccCCceEEEEecCcEEEEEecCCcchhhccCCC
Confidence 3 567777889999999999998866666553
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.77 E-value=1.5 Score=51.31 Aligned_cols=148 Identities=15% Similarity=0.212 Sum_probs=80.8
Q ss_pred eecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEE-----------EecCCCcEEEEeeCCCeEEEEeeccc
Q 001343 838 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLA-----------FHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1096)
Q Consensus 838 ~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~-----------~s~~d~~~l~s~~~dg~i~iw~~~~~ 905 (1096)
-|-++.-++..+. +|.|++.++.+.. ...+++|...++.++ .|| ||..++.++.||.++.|.+.-
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi- 266 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYI- 266 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeee-
Confidence 3445666777776 5777776664432 255667887777654 467 777777777777777776532
Q ss_pred eeeeeeccccccccceeeecCCCCCCCCCceEEEecCC---------cEEEEE--ecceEEEEEcccceeccccccCCCC
Q 001343 906 ELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ---------VRMLVV--HETQLAIYDASKMERIRQWTPQDAL 974 (1096)
Q Consensus 906 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg---------~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 974 (1096)
..+...+|+.....|....-.|.-|+... .+++++ ..+.+.+|.....+|+....
T Consensus 267 ---------~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~----- 332 (1283)
T KOG1916|consen 267 ---------TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL----- 332 (1283)
T ss_pred ---------eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----
Confidence 11222334444444432121222232221 133332 35679999988888873332
Q ss_pred CCCceEEEEeeCCcE------------EEEEecCCcEEEEe
Q 001343 975 SAPISCAVYSCNSQL------------VFATFCDGNIGVFD 1003 (1096)
Q Consensus 975 ~~~i~~l~~s~dg~~------------la~~~~dg~i~vwd 1003 (1096)
.+.|..|. -+||+. ++.-+-|+.|++|.
T Consensus 333 ~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 333 IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 33445454 334432 23345677788875
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=84.27 E-value=71 Score=35.16 Aligned_cols=198 Identities=10% Similarity=0.121 Sum_probs=98.7
Q ss_pred cEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecC---CCcE--EEEee-CC---CeEEEEeeccceeeeeecc
Q 001343 844 SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ---DNNI--IAIGT-ED---STIHIYNVRVDELCVWSID 913 (1096)
Q Consensus 844 ~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~---d~~~--l~s~~-~d---g~i~iw~~~~~~~~~w~~~ 913 (1096)
.+++... ++.+.+||+ .|+.+..+. .+..+.+..-.+ +++. |++++ .+ .+|++|.+......+-.+.
T Consensus 69 SlIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp -EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred ceEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 3444444 688999999 667777663 344454433210 3332 34443 32 4799998874320000000
Q ss_pred ccccccceeeecCCCCCCCCCceEEE--ec-CCcEEEE--EecceEEEEEcc---cc----eeccccccCCCCCCCceEE
Q 001343 914 TWEKRKSVTIHIPAGKTPTGDTRVQF--NA-DQVRMLV--VHETQLAIYDAS---KM----ERIRQWTPQDALSAPISCA 981 (1096)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~v~~v~f--s~-dg~~l~~--~~d~~i~iwd~~---~~----~~~~~~~~~~~~~~~i~~l 981 (1096)
.. ..++. .+ ...+..+++ ++ +|.+.+. ..+|.+.-|.+. .| +.++.+.. .+.+..+
T Consensus 146 ~~----~~p~~--~~--~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGC 213 (381)
T PF02333_consen 146 DP----AAPIA--TD--LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEGC 213 (381)
T ss_dssp BT----TC-EE---S--SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEE
T ss_pred CC----Ccccc--cc--cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceEE
Confidence 00 00010 00 013455665 33 4654444 678888888774 22 45666654 5678889
Q ss_pred EEeeCCcEEEEEecCCcEEEEecCCCc--eeEEEccccccCCCccCCCccccceEEEecCCCC--ceEEEEeeCCcEEEE
Q 001343 982 VYSCNSQLVFATFCDGNIGVFDADTLR--LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP--NQFAIGLTDGSVKVM 1057 (1096)
Q Consensus 982 ~~s~dg~~la~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~--~~l~s~~~dg~i~vW 1057 (1096)
.......+|+.+-+|.-|.-|+.+... ....+.... ..+ ...-|--++|-..+ ++ -++++.-.+++..||
T Consensus 214 VVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~--g~~---l~aDvEGlaly~~~-~g~gYLivSsQG~~sf~Vy 287 (381)
T PF02333_consen 214 VVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD--GDG---LVADVEGLALYYGS-DGKGYLIVSSQGDNSFAVY 287 (381)
T ss_dssp EEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS--SSS---B-S-EEEEEEEE-C-CC-EEEEEEEGGGTEEEEE
T ss_pred EEecccCCEEEecCccEEEEEecCCCCCCcceeeeccc--ccc---cccCccceEEEecC-CCCeEEEEEcCCCCeEEEE
Confidence 988888899999999888878776322 222221100 111 12234433344444 33 344444457789999
Q ss_pred ccCCC
Q 001343 1058 EPSES 1062 (1096)
Q Consensus 1058 ~v~~~ 1062 (1096)
+....
T Consensus 288 ~r~~~ 292 (381)
T PF02333_consen 288 DREGP 292 (381)
T ss_dssp ESSTT
T ss_pred ecCCC
Confidence 98764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=84.18 E-value=3.8 Score=27.91 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=22.7
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCC--CeEEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSN--GEITLW 372 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~d--g~I~iw 372 (1096)
....-.+..|||||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455678999999999877787777 776666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=84.15 E-value=1.3e+02 Score=38.05 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=17.2
Q ss_pred CcccEEEEEEecCCceEEEeecC
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSN 785 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~d 785 (1096)
+-+.+.+++.+|||...++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 55678899999999866655544
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=84.08 E-value=87 Score=40.76 Aligned_cols=377 Identities=12% Similarity=0.112 Sum_probs=176.8
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccccc
Q 001343 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (1096)
Q Consensus 588 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 667 (1096)
++.+.-+++|..+=. .|+.+|.||........ . .......+..+.-.-||...+ -+.+ . +-|+..+.....
T Consensus 365 LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~-~-~~~~d~~~S~Ls~qgdG~lYA-k~~~-~--l~nLSs~~~~~~- 435 (1774)
T PF11725_consen 365 LTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKP-P-PDKSDTPFSSLSRQGDGKLYA-KDDD-T--LVNLSSGQMSEA- 435 (1774)
T ss_pred hhccccCCCCCeEEe--ecCceeeeccccceecC-C-CCcccchhhhhcccCCCceEe-cCCC-c--eeecCCCCcchh-
Confidence 444556666665543 46788888877653332 1 112223566666666777666 2222 1 234444421111
Q ss_pred ccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeee
Q 001343 668 VENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIV 747 (1096)
Q Consensus 668 ~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 747 (1096)
....+.+...+++|... +.++-....+.+|++....
T Consensus 436 --------~v~~l~sfSv~~~g~vA------------------------------------~L~~~d~q~~qL~~m~~~~ 471 (1774)
T PF11725_consen 436 --------EVDKLKSFSVAPDGTVA------------------------------------MLTGKDGQTLQLHDMSPVD 471 (1774)
T ss_pred --------hhhhcccccccCCCcee------------------------------------eeecCCCcceeeeccCccc
Confidence 11123344555555442 2233333556788877532
Q ss_pred c---CCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcccccccc
Q 001343 748 D---SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824 (1096)
Q Consensus 748 ~---~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~ 824 (1096)
. +.....+.+.+ ......+|.++++ .|++...+|.++.=++.... ...+++ +......-+.....
T Consensus 472 a~~~p~~~~~L~L~d---G~a~A~~VgLs~d--rLFvADseGkLYsa~l~~~~-~~~~~l------~~~p~~~~~~~~~~ 539 (1774)
T PF11725_consen 472 APPTPRKTKTLQLAD---GKAQAQSVGLSND--RLFVADSEGKLYSADLPAAQ-DNEPKL------KLMPEPAYQLLGSA 539 (1774)
T ss_pred cccCccceeeeeccC---CchhhhheeecCC--eEEEEeCCCCEEeccccccc-CCCcce------Eecccccccccccc
Confidence 2 22224556665 4557888889887 48888888887665554322 111111 11111100001101
Q ss_pred ccCCCcCCCeeeeeecCCCcEEEEecC--CeEEE-------------EEcccceEEEeecCCC-----CCeeEEEEecCC
Q 001343 825 VAGVNLEEAVPCIALSKNDSYVMSATG--GKISL-------------FNMMTFKVMTTFMSPP-----PASTFLAFHPQD 884 (1096)
Q Consensus 825 ~~g~~~~~~v~~l~~s~dg~~la~~~d--g~v~i-------------wd~~~~~~~~~~~~h~-----~~i~~l~~s~~d 884 (1096)
+ | +...|+...-..+|++=|..-| |.+.. |++.+--.+..-.+-. .+-..+.+.. .
T Consensus 540 ~-G--~~~~VtGF~~gd~G~lhAlikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl~r-~ 615 (1774)
T PF11725_consen 540 L-G--GDHKVTGFISGDDGQLHALIKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDLGR-A 615 (1774)
T ss_pred c-c--ccceeeccccCCCCeeeEEEeccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhcccc-c
Confidence 1 1 3444444422234444444432 33333 3332211111111111 1111233333 3
Q ss_pred CcEEEEeeCCCeEEEEeeccceeeeeecccc-ccccceeeecCCCCCC----CCCceEEEecCCcEEEEEecceEEEEEc
Q 001343 885 NNIIAIGTEDSTIHIYNVRVDELCVWSIDTW-EKRKSVTIHIPAGKTP----TGDTRVQFNADQVRMLVVHETQLAIYDA 959 (1096)
Q Consensus 885 ~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~----~~v~~v~fs~dg~~l~~~~d~~i~iwd~ 959 (1096)
| .+|-.||.|.-||-.+.. |.-... .. .+..+-+++... +.|..+.+++.-.-++-+.+..+.+=..
T Consensus 616 G---~v~L~~G~i~~wD~ttq~---W~~~~~kd~--~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~ 687 (1774)
T PF11725_consen 616 G---LVGLQDGKIQYWDSTTQC---WKDAGVKDI--DQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQR 687 (1774)
T ss_pred c---ceeeccceEeeecCcchh---hhhccCcCH--HHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccc
Confidence 3 334457999999987654 421110 00 000011111111 4667777776666555544444432111
Q ss_pred ccceec-cccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEec
Q 001343 960 SKMERI-RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAH 1038 (1096)
Q Consensus 960 ~~~~~~-~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s 1038 (1096)
.+.-.+ ..+.+.. ...|.++++-.+.+|++ ....|.+.+.. ..+.... ...++ -...|.. |+..
T Consensus 688 r~~~e~G~~l~Gl~--~~~i~a~Avv~~~~fva-ld~qg~lt~h~-k~g~p~~------l~~~g---l~G~ik~--l~lD 752 (1774)
T PF11725_consen 688 RNKVELGDALEGLE--DRVITAFAVVNDNKFVA-LDDQGDLTAHQ-KPGRPVP------LSRPG---LSGEIKD--LALD 752 (1774)
T ss_pred cCCCCCCccccCCC--cCcceeEEEEcCCceEE-eccCCcccccc-CCCCCcc------CCCCC---CCcchhh--eeec
Confidence 111111 1122222 66788888876666655 77888888887 6665222 22223 3557884 7776
Q ss_pred CCCCceEEEEeeCCcEEEEc
Q 001343 1039 PLEPNQFAIGLTDGSVKVME 1058 (1096)
Q Consensus 1039 ~~d~~~l~s~~~dg~i~vW~ 1058 (1096)
. ..++++ ...+|.++.-+
T Consensus 753 ~-~~nL~A-lt~~G~Lf~~~ 770 (1774)
T PF11725_consen 753 E-KQNLYA-LTSTGELFRLP 770 (1774)
T ss_pred c-ccceeE-ecCCCceeecC
Confidence 5 555555 45678777543
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.34 E-value=77 Score=34.89 Aligned_cols=100 Identities=12% Similarity=0.151 Sum_probs=67.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccc-ceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
...++|.++.||+|.+.||+--.+.+|.+.+....+.... ..+.+..+..|....|+.... ++..+ +.-+-+|-
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e---~A~i~-~~G~e~y~v 139 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE---IAFIT-DQGIEFYQV 139 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee---EEEEe-cCCeEEEEE
Confidence 3567999999999999999999999999999854332211 112233445688999987643 44444 33455665
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCC
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKEN 507 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~ 507 (1096)
...+.++..+.|...|+-..|.+..+
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccc
Confidence 44455666677888888777776543
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.24 E-value=25 Score=44.45 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=43.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 538 ~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
..++.+..+......+.... .+.+.+|+.........+..... ..+.++..++++..||.+.+||...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 198 EYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCC
Confidence 33455555554444444433 55666666544443333333222 11778899999999999999999987
Q ss_pred eE
Q 001343 618 NI 619 (1096)
Q Consensus 618 ~~ 619 (1096)
..
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 65
|
|
| >smart00757 CRA CT11-RanBPM | Back alignment and domain information |
|---|
Probab=83.12 E-value=3.8 Score=35.38 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=52.2
Q ss_pred CHHHHHHHHHhhcccccccCHH---HHHHHHHHhcccCccchhhhcccCCchHHHHHHHHHHHhhcccCccccccccCCC
Q 001343 89 DKAKAVDILVNDLKVFSTFNEE---LFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPT 165 (1096)
Q Consensus 89 ~~~~A~~~l~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~ 165 (1096)
++.+|+++.|+++.++...++. .++++..++..+...+...+...- ....|+.+.+.+...+-... +.
T Consensus 2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll-~~~~~~~la~~~n~~~l~~~--------~~ 72 (99)
T smart00757 2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELL-SPSQREKLAEELNSAILELL--------HG 72 (99)
T ss_pred cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHC-CHHHHHHHHHHHHHHHHHHc--------cC
Confidence 5789999999999999776643 444444555554331111222111 34468888888877664311 00
Q ss_pred CC-chHHHHHHHHHHHHH
Q 001343 166 LK-SSRLRTLINQSLNWQ 182 (1096)
Q Consensus 166 ~p-~~rL~~Ll~qa~~~q 182 (1096)
.| ...|..++.+.+..+
T Consensus 73 ~~~~s~L~~~~~~~~~~~ 90 (99)
T smart00757 73 KSSESPLEILLSAGLAAL 90 (99)
T ss_pred CCCCChHHHHHHHHHHHH
Confidence 22 357999999887776
|
protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.80 E-value=1 Score=48.99 Aligned_cols=125 Identities=17% Similarity=0.265 Sum_probs=86.6
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
.-.+.-+.....++|.-+|..+++.+-..+.+.+||+.+..... + ..-..|.... +.|++.
T Consensus 68 ~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---L--------------E~gg~~s~sl--l~wsKg 128 (615)
T KOG2247|consen 68 ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---L--------------ESGGTSSKSL--LAWSKG 128 (615)
T ss_pred ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---H--------------hccCcchHHH--HhhccC
Confidence 33344455667778888888666677788999999997643210 0 0011233333 789999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceE
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL 487 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~ 487 (1096)
+..++.+-..|.+.|++..+...+- ....|...++++++.+.+. .+.++.|..+.+-...|+..
T Consensus 129 ~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~qegeta 192 (615)
T KOG2247|consen 129 TPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTTQEGETA 192 (615)
T ss_pred CccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhhhcccee
Confidence 9999999999999999988765443 3444999999999999885 67788787776655444433
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=82.69 E-value=6.2 Score=39.95 Aligned_cols=67 Identities=7% Similarity=0.103 Sum_probs=48.8
Q ss_pred EcCCCCEEEEEECCCeEEEEEccCCCccccce----eec-------ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc
Q 001343 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS----QID-------AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1096)
Q Consensus 414 ~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~l~-------~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 482 (1096)
+..++.+|++.+.+|.+++||+.+++.+.... .+. .....|..+.++.+|. -|++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEe-CCCEEEecc
Confidence 44578899999999999999999887653321 122 3567788888888887 455554 578888884
Q ss_pred C
Q 001343 483 S 483 (1096)
Q Consensus 483 ~ 483 (1096)
+
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 3
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=82.66 E-value=79 Score=34.49 Aligned_cols=71 Identities=10% Similarity=-0.043 Sum_probs=34.0
Q ss_pred CCcEEEEEECC-----CeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 507 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
++.+.+.|+.. ..+..||+.+.+-...-.... ......+..-+++..+.++.+......+..||..+.+-.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 44566666642 356777776544322111111 112222233456666666542211124568888776543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=82.64 E-value=61 Score=33.21 Aligned_cols=231 Identities=12% Similarity=0.029 Sum_probs=134.9
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
.-..++-+|||..-.++...+.|--.|..+|+.... --+....-..+..-|||. .-++-+.. -|.-.| .+.+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y---pLg~Ga~Phgiv~gpdg~--~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY---PLGSGASPHGIVVGPDGS--AWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEE---ecCCCCCCceEEECCCCC--eeEecCcc-eeEEecCcccce
Confidence 445678889998888887777887778888765431 123444556677778877 33433222 344445 34332
Q ss_pred E-EEe--eCCCCCeEEEEeeecCCCcEEEEEEC---------CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 487 L-FNF--EGHEAPVYSICPHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 487 ~-~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
. ..+ +.-........|. +.|.+-+++.. .+.|++|+. ..+...+.|+..|||..-+
T Consensus 137 t~f~lp~~~a~~nlet~vfD--~~G~lWFt~q~G~yGrLdPa~~~i~vfpa----------PqG~gpyGi~atpdGsvwy 204 (353)
T COG4257 137 TRFPLPLEHADANLETAVFD--PWGNLWFTGQIGAYGRLDPARNVISVFPA----------PQGGGPYGICATPDGSVWY 204 (353)
T ss_pred EEeecccccCCCcccceeeC--CCccEEEeeccccceecCcccCceeeecc----------CCCCCCcceEECCCCcEEE
Confidence 2 111 2223345566664 35666666642 123344432 1234567889999999877
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcC-ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
+.-. ...|...|..++.....-.... ......+.-+|.+..-++....+.+..||..... .......+....-.
T Consensus 205 asla----gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpy 279 (353)
T COG4257 205 ASLA----GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPY 279 (353)
T ss_pred Eecc----ccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcc
Confidence 7554 6677777777663322211111 1123335566777777777778888888876655 44455554444667
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++.....++...+--..|.|.-+|..+.
T Consensus 280 s~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 280 SMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred eeeeccCCcEEeeccccCceeecCcccc
Confidence 7777766666665555566666665543
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=82.48 E-value=7.1 Score=46.13 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=72.2
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccc-c-CccccccccccCCCCEEEEEEc--CCCCEEEEEECCCeEEEEE
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAA-C-SLPFQASIFKDVPISVSRVAWS--PDGNYVGVAFTKHLIQLYS 434 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~h~~~V~~l~~s--pd~~~l~s~~~dg~i~vwd 434 (1096)
+|+.+..||.|.+|.+++=....... .-+... . ....+..+...-..+++.++++ ...++||+++....|.||-
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 78888999999999874311000000 000000 0 0000111222345689999999 8889999998888888886
Q ss_pred ccCCCccccceeecccccCEEEEEEecCCC--c--EEEEEEeCCCcEEEEE
Q 001343 435 YAGSNDLRQHSQIDAHVGAVNDLAFAYPNK--L--LCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 435 ~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~--~--~~l~s~s~d~~i~iwd 481 (1096)
......-.....-..|...|-+|+|.++.. . ..+++++-.|.+.+|+
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 654211111101123667899999987651 1 3678888899998887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=81.88 E-value=93 Score=34.81 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=18.6
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
+.+||..+.+....-..... .-...+..-++.+++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788776654322221111 11222333356677777653
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=81.57 E-value=17 Score=37.24 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=66.6
Q ss_pred CeeeeeecCCCcEEEEecC--C--eEEEEEccc----ceEEEee--cCCCCCeeEEEEecCCCcEEEEeeCCC-eEEEEe
Q 001343 833 AVPCIALSKNDSYVMSATG--G--KISLFNMMT----FKVMTTF--MSPPPASTFLAFHPQDNNIIAIGTEDS-TIHIYN 901 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~d--g--~v~iwd~~~----~~~~~~~--~~h~~~i~~l~~s~~d~~~l~s~~~dg-~i~iw~ 901 (1096)
...+-++-+||++|.+|++ | .+++++..+ ......- ......=-++...+ ||+.|+.|+.+. +..+|.
T Consensus 68 FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~-DG~vlIvGG~~~~t~E~~P 146 (243)
T PF07250_consen 68 FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP-DGRVLIVGGSNNPTYEFWP 146 (243)
T ss_pred cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC-CCCEEEEeCcCCCcccccC
Confidence 3344567799999999984 3 388888644 1111110 01112222455667 899999988874 234443
Q ss_pred eccceeeeeeccccccccceeeecCCCCC-CCCCceEEEecCCcEEEEEecceEEEEEcccceeccccc
Q 001343 902 VRVDELCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWT 969 (1096)
Q Consensus 902 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~ 969 (1096)
-.....-.+. ...+....... ..---.+..-|||+.++.+..+ -.|||..+.+.++.+.
T Consensus 147 ~~~~~~~~~~--------~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 147 PKGPGPGPVT--------LPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CccCCCCcee--------eecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEeeCC
Confidence 3211100000 00111110000 0122356677999988886543 5567988887666654
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=81.46 E-value=59 Score=32.26 Aligned_cols=50 Identities=12% Similarity=0.359 Sum_probs=37.1
Q ss_pred CEEEEEEcCCeEEEEeCC--CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 598 NHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
..|+.+...+.|.+|++. ..+.+..+..- +.|..+.++..|++|++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEee
Confidence 455555677889999988 34555555543 378999999999999987543
|
|
| >PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins | Back alignment and domain information |
|---|
Probab=81.41 E-value=9.1 Score=33.38 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=53.8
Q ss_pred CcchHHHHHHHHHHHHHcChHHHHHHHHHhhCCCccHHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHH
Q 001343 2 SSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1096)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 81 (1096)
..+.+|=...|.+|++..| +.+.+++|.|++.-.-+.| .|+.+..|........ .-...+...
T Consensus 32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTvR~r-------Ld~ii~~lg~~~~~~~-------~~~~~~~~I 94 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYPTVRNR-------LDKIIEKLGYEEDEEE-------EEEDERKEI 94 (113)
T ss_pred hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHHHHH-------HHHHHHHhCCCCCccc-------ccchhHHHH
Confidence 4577888999999999999 9999999999998622111 1333344433111111 112347788
Q ss_pred HHhhccCC--HHHHHHHHH
Q 001343 82 LEALDRQD--KAKAVDILV 98 (1096)
Q Consensus 82 lell~~~~--~~~A~~~l~ 98 (1096)
|+.|+.|+ .++|++.|+
T Consensus 95 L~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 95 LDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHcCCCCHHHHHHHhC
Confidence 99999997 677887663
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=81.27 E-value=5.9 Score=27.35 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=27.6
Q ss_pred CCCcEEEEec--CCeEEEEEcccceEEEeecCCCCCeeEEEE
Q 001343 841 KNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAF 880 (1096)
Q Consensus 841 ~dg~~la~~~--dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~ 880 (1096)
|++++|.++. ++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5777777766 588999999999888877652 33334444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=80.63 E-value=63 Score=32.07 Aligned_cols=163 Identities=12% Similarity=0.113 Sum_probs=89.3
Q ss_pred CeeeeeecCCCcEEEEecCCeEEEEEcc--cceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC------eEEEE---e
Q 001343 833 AVPCIALSKNDSYVMSATGGKISLFNMM--TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS------TIHIY---N 901 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~dg~v~iwd~~--~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg------~i~iw---~ 901 (1096)
....++-++.+.++++++..+|.+|++. ..+.+.+|.. -+.|..++++. .|++|+|--.+. .+|+| +
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3445555554556555667889999987 3445666643 37899999999 899999864332 45665 2
Q ss_pred eccce---eeeeecc----ccc----cccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEccccee-ccc--
Q 001343 902 VRVDE---LCVWSID----TWE----KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMER-IRQ-- 967 (1096)
Q Consensus 902 ~~~~~---~~~w~~~----~~~----~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~-~~~-- 967 (1096)
..... +++.-.. ... ...-..+..+-. ....+++--|-.--|+++.++.+.+|.+..... ...
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~---~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~ 173 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLS---EPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFS 173 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCC---CCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEeccccc
Confidence 22111 2221111 000 000011122221 256777777766677778889999999875443 111
Q ss_pred -------cccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEec
Q 001343 968 -------WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1004 (1096)
Q Consensus 968 -------~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 1004 (1096)
+..++ ..-.+..++| .+.|+|..+ +..++|+.+
T Consensus 174 ~lDFe~~l~~~~-~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 174 FLDFERSLIDHI-DNFKPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred EEechhhhhhee-cCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 11111 0222334444 466888555 446776654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1096 | ||||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-10 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-10 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-09 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 4e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 5e-04 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 5e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 5e-04 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 6e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 7e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 8e-04 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 8e-04 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 9e-04 |
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1096 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.9 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.88 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.87 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.86 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.85 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.85 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.84 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.83 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.82 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.81 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.8 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.8 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.79 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.79 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.79 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.78 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.78 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.78 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.76 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.75 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.75 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.71 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.71 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.71 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.7 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.67 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.65 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.65 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.64 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.64 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.63 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.6 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.59 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.58 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.58 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.56 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.56 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.55 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.53 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.53 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.53 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.52 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.51 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.5 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.49 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.47 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.47 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.47 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.47 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.46 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.44 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.43 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.43 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.43 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.43 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.39 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.38 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.35 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.33 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.33 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.32 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.27 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.27 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.23 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.23 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.23 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.21 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.2 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.19 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.19 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.17 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.17 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.12 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.11 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.11 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.1 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.08 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.06 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.06 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.05 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.03 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.03 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.03 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.02 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.0 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.99 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.99 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.97 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.93 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.9 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.89 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.88 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.86 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.83 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.8 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.71 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.66 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.64 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.59 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.59 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.57 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.56 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.49 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.49 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.49 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.48 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.47 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.43 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.42 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.41 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.4 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.4 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.39 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.38 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.38 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.38 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.38 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.37 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.37 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.36 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.34 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.33 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.32 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.3 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.27 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.24 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.23 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.17 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.13 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.08 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.08 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.06 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.02 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.97 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.97 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.96 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.93 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.92 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.91 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.9 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.87 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.76 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.74 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.72 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.72 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.72 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.72 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.7 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.61 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.5 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.41 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.36 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.31 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.2 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.2 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.15 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 97.05 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.05 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.03 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.0 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 96.96 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.95 | |
| 2j49_A | 148 | Transcription initiation factor TFIID subunit 5; n | 96.89 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.89 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.8 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.8 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.71 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.6 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 96.56 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.55 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.46 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.39 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.34 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.33 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.29 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.26 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.25 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.17 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.08 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.03 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.9 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.8 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.71 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.66 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 95.56 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.55 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.1 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.08 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.03 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.94 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.41 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.4 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.98 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 93.8 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.72 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.63 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 92.88 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 92.78 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 92.13 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.1 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 89.0 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 88.86 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 88.36 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 85.73 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 85.42 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 82.28 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 80.15 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-67 Score=636.17 Aligned_cols=565 Identities=20% Similarity=0.337 Sum_probs=485.0
Q ss_pred Eee-cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 339 VSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 339 ~~l-~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
+.| +|++.|+|++|||||+ +||+|+.|++|+|||. +++.+.. +.+|.+.|.+++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECCC
Confidence 345 4999999999999999 6999999999999995 5666543 7889999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCe
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v 497 (1096)
+++||+++.|++|+|||.. ++.+. .+.+|.+.|.+++|+|+++ +|++++.|+.+++|+..........+|...+
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v 142 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSV 142 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCE
T ss_pred CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccccceeeeccCCCCce
Confidence 9999999999999999964 45444 6889999999999999999 8999999999999997777888889999999
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
..+.+.+ ++..+++++.++.+++|+.. .........+...+.++.++|+++++++++. ++.|++||. +++.+
T Consensus 143 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~ 214 (577)
T 2ymu_A 143 WGVAFSP--DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLL 214 (577)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEE
T ss_pred eeeeeec--CCccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcEE
Confidence 9999976 66789999999999999854 4455566778889999999999999999987 999999995 57788
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
..+.+|.. .+.+++|+|++.++++++.|+.|++||. +++.+..+..+.. .|.+++|+|+++.+++++.|+.|++|+
T Consensus 215 ~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~--~v~~v~~~~d~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 215 QTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVNGVAFRPDGQTIASASDDKTVKLWN 290 (577)
T ss_dssp EEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCC--CEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence 88998887 8999999999999999999999999996 4667777776654 899999999999999999999999999
Q ss_pred cCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCC
Q 001343 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDK 737 (1096)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~ 737 (1096)
... +....+.++. ..+.+++|+|+++.+ ++++.|+.
T Consensus 291 ~~~--~~~~~~~~h~-----~~v~~~~~~~~~~~l-------------------------------------~t~~~d~~ 326 (577)
T 2ymu_A 291 RNG--QLLQTLTGHS-----SSVWGVAFSPDGQTI-------------------------------------ASASDDKT 326 (577)
T ss_dssp TTS--CEEEEECCCS-----SCEEEEEECTTSSEE-------------------------------------EEEETTSC
T ss_pred CCC--cEEEEEecCC-----CCeEEEEECCCCCEE-------------------------------------EEEeCCCe
Confidence 743 3455555553 346778887766655 77788899
Q ss_pred ccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCc
Q 001343 738 PKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 817 (1096)
Q Consensus 738 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~ 817 (1096)
|++|+.. ..... .+.+ |...+.+++|+|+++.+++++.++.+++|+...
T Consensus 327 i~~w~~~----~~~~~--~~~~---~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~---------------------- 375 (577)
T 2ymu_A 327 VKLWNRN----GQHLQ--TLTG---HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------------------- 375 (577)
T ss_dssp EEEEETT----SCEEE--EECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----------------------
T ss_pred EEEEeCC----CCeeE--EEeC---CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----------------------
Confidence 9999975 23332 4556 899999999999999999999999999998521
Q ss_pred cccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCe
Q 001343 818 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (1096)
Q Consensus 818 ~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~ 896 (1096)
+.+. .+.+ |...|++++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| |+++|++++.|++
T Consensus 376 -~~~~-~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 376 -QLLQ-TLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKT 449 (577)
T ss_dssp -CEEE-EEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred -CEEE-EecC--CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCE
Confidence 1111 2444 889999999999999999998 799999995 7788999999999999999999 8999999999999
Q ss_pred EEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCC
Q 001343 897 IHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALS 975 (1096)
Q Consensus 897 i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~ 975 (1096)
|++||+... .+..+.+|.. .|.+++|+||+++|++ +.|+.|++||. ++++++.+..| .
T Consensus 450 v~~w~~~~~----------------~~~~~~~~~~-~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h---~ 508 (577)
T 2ymu_A 450 VKLWNRNGQ----------------LLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH---S 508 (577)
T ss_dssp EEEEETTSC----------------EEEEEECCSS-CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC---S
T ss_pred EEEEECCCC----------------EEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC---C
Confidence 999997543 3455667776 9999999999999999 78999999996 57777877765 8
Q ss_pred CCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEE
Q 001343 976 APISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVK 1055 (1096)
Q Consensus 976 ~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~ 1055 (1096)
..|.+++|+|||++||+++.||.|++||. +++....+. + |...|+ +++|+| |+++|+|++.|++|+
T Consensus 509 ~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~---h~~~v~--~~~fs~-dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 509 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------G---HSSSVW--GVAFSP-DGQTIASASSDKTVK 574 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------C---CSSCEE--EEEECT-TSSCEEEEETTSCEE
T ss_pred CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------C---CCCCEE--EEEEcC-CCCEEEEEeCCCEEE
Confidence 99999999999999999999999999996 456544433 3 899999 599999 999999999999999
Q ss_pred EEc
Q 001343 1056 VME 1058 (1096)
Q Consensus 1056 vW~ 1058 (1096)
+||
T Consensus 575 ~Wd 577 (577)
T 2ymu_A 575 LWN 577 (577)
T ss_dssp EEC
T ss_pred EeC
Confidence 997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-66 Score=622.16 Aligned_cols=577 Identities=14% Similarity=0.197 Sum_probs=470.2
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
+.+.+.+++|+|+|+ +||+++ ++.|+||++.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 567889999999999 688886 6799999998776554 2789999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC----CcEEEEEcCCceEEEeeCCCCCeE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~~~v~ 498 (1096)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|+++ .|++++.+ +.|++|| .++.+..+.+|...|+
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee-CCCCcceecCCCCCce
Confidence 99999999999997654432 225778999999999999999 78888765 3677777 5667778999999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
+++|+|.+ ...|++|+.|++|++||..+.+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+.
T Consensus 152 ~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEee
Confidence 99998843 136999999999999999888888889999999999999999999999997 9999999999999988
Q ss_pred EEc-------CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC-CCCccEEEEeCCCCEEEEEECC
Q 001343 579 TYA-------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 579 ~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..... ...+..+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred eeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCC
Confidence 884 5766 899999999999999999999999999999999888865421 113345555 77899999999
Q ss_pred CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCcc
Q 001343 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1096)
Q Consensus 651 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 730 (1096)
+.+++|+...+ .....+.+|. ..|.+++|+|+|+++ +
T Consensus 304 ~~i~~~~~~~~-~~~~~~~gh~-----~~v~~l~~spdg~~l-------------------------------------~ 340 (611)
T 1nr0_A 304 GFINFVNPELG-SIDQVRYGHN-----KAITALSSSADGKTL-------------------------------------F 340 (611)
T ss_dssp CCEEEEETTTT-EEEEEECCCS-----SCEEEEEECTTSSEE-------------------------------------E
T ss_pred CcEEEEeCCCC-CcceEEcCCC-----CCEEEEEEeCCCCEE-------------------------------------E
Confidence 99999999877 4555555653 457888888776665 7
Q ss_pred ccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCc
Q 001343 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1096)
Q Consensus 731 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i 810 (1096)
+++.|++|++|++. .+.+......+ |...|.+++|++++. +++++.|+.+++|++........
T Consensus 341 s~s~D~~v~~Wd~~----~~~~~~~~~~~---h~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~~~--------- 403 (611)
T 1nr0_A 341 SADAEGHINSWDIS----TGISNRVFPDV---HATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSS--------- 403 (611)
T ss_dssp EEETTSCEEEEETT----TCCEEECSSCS---CSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTT---------
T ss_pred EEeCCCcEEEEECC----CCceeeecccC---CcceEEEEEECCCCc-EEEEEcCCceEEeecCCcccccc---------
Confidence 88888999999987 34444322244 899999999998774 88999999999999754221000
Q ss_pred cccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEE
Q 001343 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1096)
Q Consensus 811 ~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s 890 (1096)
...... ......+++|+|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++|++
T Consensus 404 --------~~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~las 465 (611)
T 1nr0_A 404 --------KAVANK-----LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAV 465 (611)
T ss_dssp --------SCCEEE-----CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEE
T ss_pred --------ceeeee-----cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEE
Confidence 000001 23346789999999888888889999998 444 55554 788899999999 9999999
Q ss_pred eeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEccc-ceeccc-
Q 001343 891 GTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASK-MERIRQ- 967 (1096)
Q Consensus 891 ~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~-~~~~~~- 967 (1096)
|+.|++|++||+.++.. ..+.. .+|.. .|.+++|||||++|++ +.|++|++|++.+ ++++..
T Consensus 466 gs~D~~v~lwd~~~~~~-------------~~~~~-~~h~~-~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~ 530 (611)
T 1nr0_A 466 GGQDSKVHVYKLSGASV-------------SEVKT-IVHPA-EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN 530 (611)
T ss_dssp EETTSEEEEEEEETTEE-------------EEEEE-EECSS-CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC
T ss_pred eCCCCeEEEEEccCCce-------------eeeec-cCCCC-ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee
Confidence 99999999999987651 11222 45665 8999999999999999 8899999999998 676554
Q ss_pred cccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeE-EEccccccCCCccCC-CccccceEEEecCCCCceE
Q 001343 968 WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC-YIAPSTYLSPSVLNG-SQTVYPLVVAAHPLEPNQF 1045 (1096)
Q Consensus 968 ~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~h-~~~v~s~~l~~s~~d~~~l 1045 (1096)
....| ...|.+++|+|||++||+|+.|++|++|+++++.... .. ..+ | ...|. +++|+| |+. |
T Consensus 531 ~~~~H--~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~------~~~---h~~~~v~--~v~fs~-d~~-l 595 (611)
T 1nr0_A 531 SWTFH--TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII------KGA---HAMSSVN--SVIWLN-ETT-I 595 (611)
T ss_dssp CCCCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE------TTS---STTSCEE--EEEEEE-TTE-E
T ss_pred eeeec--ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh------hcc---CcccCee--EEEEcC-CCE-E
Confidence 33334 8999999999999999999999999999999876221 11 113 7 78899 599999 887 9
Q ss_pred EEEeeCCcEEEEccC
Q 001343 1046 AIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 1046 ~s~~~dg~i~vW~v~ 1060 (1096)
++|+.|++|++|++.
T Consensus 596 ~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 596 VSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEETTSCEEEEECC
T ss_pred EEecCCCCEEEEecc
Confidence 999999999999973
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-62 Score=586.71 Aligned_cols=555 Identities=15% Similarity=0.189 Sum_probs=442.9
Q ss_pred CCCceeecCCCce-eeecCCCCcceEEee-cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeeccc
Q 001343 314 SAEEVTYSSSRHQ-TWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMA 391 (1096)
Q Consensus 314 ~~~~v~~~~~~~~-~~~~~~~~~~~~~~l-~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 391 (1096)
+...+++...... +|++.+ +....++ +|.+.|++++|||+|+ +||+|+.||+|+|||+.+++....
T Consensus 29 dg~~l~~~~~~~v~l~~~~~--~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~--------- 96 (611)
T 1nr0_A 29 AGDKIQYCNGTSVYTVPVGS--LTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK--------- 96 (611)
T ss_dssp TSSEEEEEETTEEEEEETTC--SSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE---------
T ss_pred CCCEEEeCCCCEEEEecCCC--cccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee---------
Confidence 3444555543322 888764 3444555 5999999999999999 799999999999999976553321
Q ss_pred ccCccccccccccCCCCEEEEEEcCCCCEEEEEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEE
Q 001343 392 ACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467 (1096)
Q Consensus 392 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~ 467 (1096)
..+.+|.+.|.+++|+|||++|++++.+ +.|++|| .++... .+.+|.+.|++++|+|++.. .
T Consensus 97 --------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~ 162 (611)
T 1nr0_A 97 --------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-R 162 (611)
T ss_dssp --------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-E
T ss_pred --------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-E
Confidence 1267799999999999999999998865 3677777 455444 57899999999999999874 6
Q ss_pred EEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-------CCCC
Q 001343 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGH 539 (1096)
Q Consensus 468 l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~ 539 (1096)
|++|+.|++|++|| ..++++..+.+|...|.+++|+| ++.+|++++.||+|++||+.+++....+. .|..
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred EEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC
Confidence 99999999999999 88889999999999999999977 67899999999999999999888877763 6888
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCcc--ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
.|.+++|+|++++|++++. |+.|++||+.+++.+.++..+... ....+.| ++..+++++.|+.+++|+...+
T Consensus 241 ~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~ 314 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG 314 (611)
T ss_dssp CEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT
T ss_pred CEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCC
Confidence 9999999999999999997 999999999999999888754321 3344555 6788999999999999999999
Q ss_pred eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccc-cCCCcccccCcceeEEeecCCCeEEecC
Q 001343 618 NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV-ENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 618 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
+....+.+|.. .|.+++|+|++++|++++.|+.|++||+.++. ....+ .. +...+.+++|++++.
T Consensus 315 ~~~~~~~gh~~--~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~~~~-----h~~~v~~~~~s~~~~------ 380 (611)
T 1nr0_A 315 SIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFPDV-----HATMITGIKTTSKGD------ 380 (611)
T ss_dssp EEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECSSCS-----CSSCEEEEEECTTSC------
T ss_pred CcceEEcCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeecccC-----CcceEEEEEECCCCc------
Confidence 88877777655 89999999999999999999999999998873 33322 22 234577788875543
Q ss_pred CCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCC-ceEEEEcCCCCCCcccEEEEEEecC
Q 001343 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG-QCRLVTMPESTDTSSKVVRLLYTNS 775 (1096)
Q Consensus 697 s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~s~~ 775 (1096)
+++++.|+++++|+........ ...... ....+..++|+|+
T Consensus 381 --------------------------------l~s~s~d~~v~~w~~~~~~~~~~~~~~~~------~~~~~~~~~~s~d 422 (611)
T 1nr0_A 381 --------------------------------LFTVSWDDHLKVVPAGGSGVDSSKAVANK------LSSQPLGLAVSAD 422 (611)
T ss_dssp --------------------------------EEEEETTTEEEEECSSSSSSCTTSCCEEE------CSSCEEEEEECTT
T ss_pred --------------------------------EEEEEcCCceEEeecCCccccccceeeee------cCCCCcEEEEeCC
Confidence 3577778999999976311110 111122 2335678999999
Q ss_pred CceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeE
Q 001343 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKI 854 (1096)
Q Consensus 776 ~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v 854 (1096)
+..++++ .++.+++|+-. + +. .+. |...+.+++|+|||++||+|+ |++|
T Consensus 423 g~~~~~~-~~~~v~~~~~~------------------------~-~~-~~~---~~~~v~~va~spdg~~lasgs~D~~v 472 (611)
T 1nr0_A 423 GDIAVAA-CYKHIAIYSHG------------------------K-LT-EVP---ISYNSSCVALSNDKQFVAVGGQDSKV 472 (611)
T ss_dssp SSCEEEE-ESSEEEEEETT------------------------E-EE-EEE---CSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred CcEEEEE-eCceEEEEeCC------------------------c-ee-eee---cCCCceEEEEeCCCCEEEEeCCCCeE
Confidence 9866666 56788888721 1 00 111 667899999999999999999 7999
Q ss_pred EEEEcccceE--EEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeecc-ceeeeeeccccccccceeeec--CCCC
Q 001343 855 SLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DELCVWSIDTWEKRKSVTIHI--PAGK 929 (1096)
Q Consensus 855 ~iwd~~~~~~--~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~-~~~~~w~~~~~~~~~~~~~~~--~~~~ 929 (1096)
++||+.++.. +.. .+|...|++++|+| |+++|++++.|++|++|++.+ ++ .+.. ..+|
T Consensus 473 ~lwd~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~---------------~~~~~~~~~H 535 (611)
T 1nr0_A 473 HVYKLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFE---------------LAHTNSWTFH 535 (611)
T ss_dssp EEEEEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTE---------------ESCCCCCCCC
T ss_pred EEEEccCCceeeeec-cCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCc---------------eeeeeeeeec
Confidence 9999977654 344 67999999999999 999999999999999999987 44 2222 3347
Q ss_pred CCCCCceEEEecCCcEEEE-EecceEEEEEccccee-c-cccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecC
Q 001343 930 TPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMER-I-RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1005 (1096)
Q Consensus 930 ~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~-~-~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~ 1005 (1096)
.. .|.+++|+|||++||+ +.|++|++||+.++.. + ..+..|. ...|.+++|+||++ |++++.|++|++|++.
T Consensus 536 ~~-~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~--~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 536 TA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA--MSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSST--TSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cc-ceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCc--ccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 76 9999999999999999 7899999999988753 3 3333332 68999999999999 9999999999999973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-61 Score=584.56 Aligned_cols=533 Identities=20% Similarity=0.349 Sum_probs=457.8
Q ss_pred eeecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC
Q 001343 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1096)
+|+. .+++++++. |.+.|++++|+|||+ +||+|+.|++|+|||. +++.+.. +.+|
T Consensus 42 iWd~---~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~-~~~~~~~-------------------~~~~ 97 (577)
T 2ymu_A 42 LWNR---NGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGH 97 (577)
T ss_dssp EECT---TSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET-TSCEEEE-------------------ECCC
T ss_pred EEEC---CCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EECC
Confidence 7874 466777776 999999999999999 7999999999999996 4555532 7789
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
...|.+++|+||+++|++++.|+.+++|+....... ...+|...|.++.|+|++. .+++++.++.+++|+....
T Consensus 98 ~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 171 (577)
T 2ymu_A 98 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRNGQ 171 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE----EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECTTSC
T ss_pred CCCEEEEEECCCCCEEEEEcCCCceeecccccceee----eccCCCCceeeeeeecCCc--cceecccccceecccccee
Confidence 999999999999999999999999999997654322 4678999999999999999 7999999999999997778
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
.......|...|.++.+.+ ++.++++++.||.|++||. +.+....+..|...|.+++|+|+++++++++. ++.
T Consensus 172 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~----d~~ 244 (577)
T 2ymu_A 172 LLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD----DKT 244 (577)
T ss_dssp EEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSC
T ss_pred eeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeC----CCE
Confidence 8888889999999999976 6689999999999999995 45667788889999999999999999999987 999
Q ss_pred EEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE
Q 001343 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1096)
|++||. +++.+..+.+|.. .+.+++|+|+++.+++++.|+.|++|+. +++.+..+..|.. .|.+++|+|++..++
T Consensus 245 i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~--~v~~~~~~~~~~~l~ 319 (577)
T 2ymu_A 245 VKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVWGVAFSPDGQTIA 319 (577)
T ss_dssp EEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSS--CEEEEEECTTSSEEE
T ss_pred EEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCC--CeEEEEECCCCCEEE
Confidence 999995 5678888888877 8999999999999999999999999996 4567777776654 899999999999999
Q ss_pred EEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCC
Q 001343 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d 725 (1096)
+++.|+.|++||.... .+..+.++ ...+.+++|+|+|+.+
T Consensus 320 t~~~d~~i~~w~~~~~--~~~~~~~~-----~~~v~~~~~s~~g~~l--------------------------------- 359 (577)
T 2ymu_A 320 SASDDKTVKLWNRNGQ--HLQTLTGH-----SSSVWGVAFSPDGQTI--------------------------------- 359 (577)
T ss_dssp EEETTSCEEEEETTSC--EEEEECCC-----SSCEEEEEECTTSSEE---------------------------------
T ss_pred EEeCCCeEEEEeCCCC--eeEEEeCC-----CCCEEEEEECCCCCEE---------------------------------
Confidence 9999999999998654 33444444 3346778887776655
Q ss_pred CCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCcee
Q 001343 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (1096)
Q Consensus 726 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~ 805 (1096)
++++.|+.+++|+.. +... ..+.+ |...|.+++|+|+++.|++++.|+.|++|+...
T Consensus 360 ----~~~~~dg~v~~~~~~-----~~~~-~~~~~---~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~---------- 416 (577)
T 2ymu_A 360 ----ASASDDKTVKLWNRN-----GQLL-QTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---------- 416 (577)
T ss_dssp ----EEEETTSEEEEEETT-----CCEE-EEEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEECTTC----------
T ss_pred ----EEEeCCCEEEEEcCC-----CCEE-EEecC---CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC----------
Confidence 677778999999964 2322 24455 899999999999999999999999999998521
Q ss_pred eecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCC
Q 001343 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (1096)
Q Consensus 806 ~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d 884 (1096)
+.+. .+.+ |...|++++|+||+++|++++ |+.|++||. +++.+..+.+|...|++++|+| +
T Consensus 417 -------------~~~~-~~~~--~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d 478 (577)
T 2ymu_A 417 -------------QLLQ-TLTG--HSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-D 478 (577)
T ss_dssp -------------CEEE-EEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-T
T ss_pred -------------CEEE-EecC--CCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC-C
Confidence 1111 2444 899999999999999999998 799999996 6788899999999999999999 9
Q ss_pred CcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccce
Q 001343 885 NNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKME 963 (1096)
Q Consensus 885 ~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~ 963 (1096)
+++|++++.|++|++||.. ++ +++.+.+|.. .|++++|+|||++|++ +.|+.|++||. +++
T Consensus 479 ~~~las~~~d~~i~iw~~~-~~---------------~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~ 540 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNRN-GQ---------------LLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ 540 (577)
T ss_dssp SCEEEEEETTSEEEEEETT-SC---------------EEEEEECCSS-CEEEEEECTTSSCEEEEETTSEEEEECT-TSC
T ss_pred CCEEEEEeCCCEEEEEcCC-CC---------------EEEEEeCCCC-CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCC
Confidence 9999999999999999954 44 4566778876 9999999999999999 78999999996 577
Q ss_pred eccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEe
Q 001343 964 RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1003 (1096)
Q Consensus 964 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd 1003 (1096)
++..+.+| .+.|.+++|+|||++|++++.|++|++||
T Consensus 541 ~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 541 LLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 77777765 89999999999999999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-63 Score=649.85 Aligned_cols=615 Identities=13% Similarity=0.174 Sum_probs=504.9
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
.+|.+.|++++|+|+|+ ++|+|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|+|++
T Consensus 612 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~ 671 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSY 671 (1249)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSE
T ss_pred ecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCCE
Confidence 45999999999999999 799999999999999999987754 7789999999999999999
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
||+|+.||.|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++|| .+++++..+.+|...|++
T Consensus 672 l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 672 IATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence 9999999999999999988766 578999999999999965444899999999999999 899999999999999999
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-------------CCcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
++|+| ++.++++++.||+|++||+.+......+... ...+.+++|+|+|+.+++++ ++.+
T Consensus 749 ~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v 821 (1249)
T 3sfz_A 749 CRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKV 821 (1249)
T ss_dssp EEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEE
T ss_pred EEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcE
Confidence 99987 6689999999999999999987766554322 22688999999999999987 7899
Q ss_pred EEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEE
Q 001343 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
.+||..++.....+...+...+.+++|+|++..+++++.||.|++|++.++..+..+..|.. .|.+++|+|++..+++
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEE
Confidence 99999999988888744444899999999999999999999999999999999998887765 8999999999999999
Q ss_pred EECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeE-eccCCCc-CCCcccCCCCccCC
Q 001343 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV-ERSSPVR-PSPIINGVDPTSRS 724 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~-~~~~~~~-~~~~~~~~~~~~s~ 724 (1096)
++.||.|++|++.+.... .... ......+.+.+++..+++......... ....... ...........++|
T Consensus 900 ~s~dg~v~vw~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 971 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKN-SAIV-------LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971 (1249)
T ss_dssp EETTSCEEEEEHHHHHSC-CSSS-------EEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred EeCCCeEEEEEcccccee-eeec-------ccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence 999999999998653111 1000 001112344444444333222211111 1100000 00000012346789
Q ss_pred CCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCce
Q 001343 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA 804 (1096)
Q Consensus 725 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~ 804 (1096)
+++++++++.+|.|++|++. .+.... .+.+ |...|.+++|+|+++.+++++.||.|++|++..
T Consensus 972 ~g~~l~~g~~~g~i~i~d~~----~~~~~~-~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~--------- 1034 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIELP----NNRVFS-SGVG---HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT--------- 1034 (1249)
T ss_dssp TSSEEEEEETTSCCEEEETT----TTSCEE-ECCC---CSSCCCCEEECSSSSCEEEECSSSBEEEEETTT---------
T ss_pred CCCEEEEEcCCCCEEEEEcC----CCceee-eccc---CCCceEEEEECCCCCEEEEEcCCCEEEEEECCC---------
Confidence 99999999999999999987 333333 5566 999999999999999999999999999999743
Q ss_pred eeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCC
Q 001343 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (1096)
Q Consensus 805 ~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d 884 (1096)
+.... +.+ |...|.+++|+|++++++.+.||.|++||+.+++.+..+.+|.+.|++++|+| +
T Consensus 1035 -------------~~~~~--~~~--~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d 1096 (1249)
T 3sfz_A 1035 -------------GDYVF--LQA--HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-D 1096 (1249)
T ss_dssp -------------TEEEC--CBC--CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECS-S
T ss_pred -------------CceEE--Eec--CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECC-C
Confidence 22222 223 88999999999998876666699999999999999999999999999999999 8
Q ss_pred CcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccce
Q 001343 885 NNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKME 963 (1096)
Q Consensus 885 ~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~ 963 (1096)
++++++++.||+|++||+.+++ ++..+.+|.. .|++++|+|||++|++ +.|+.|++||+.+++
T Consensus 1097 ~~~l~s~s~d~~v~iwd~~~~~---------------~~~~l~~h~~-~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1097 ATKFSSTSADKTAKIWSFDLLS---------------PLHELKGHNG-CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp SSSCEEECCSSCCCEECSSSSS---------------CSBCCCCCSS-CEEEEEECSSSSEEEEEETTSCCCEEESSSSC
T ss_pred CCEEEEEcCCCcEEEEECCCcc---------------eeeeeccCCC-cEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 9999999999999999999877 5677888887 9999999999999999 789999999999999
Q ss_pred ecccccc------CCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEe
Q 001343 964 RIRQWTP------QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1037 (1096)
Q Consensus 964 ~~~~~~~------~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~ 1037 (1096)
++..+.+ ...|.+.|.+++|+|||++|++++ |.|++||+.+++....+. + |...|. +++|
T Consensus 1161 ~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~-------~---~~~~i~--~~~~ 1226 (1249)
T 3sfz_A 1161 LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY-------T---NGTNLK--KIHV 1226 (1249)
T ss_dssp CCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC-------C---SSCCCC--CCEE
T ss_pred eEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee-------c---cCCccc--EEEE
Confidence 8776511 011388999999999999999875 899999999998654332 2 677888 4899
Q ss_pred cCCCCceEEEEeeCCcEEEEccCC
Q 001343 1038 HPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 1038 s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
+| |+++|++++.||.|++|++.+
T Consensus 1227 s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1227 SP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp CS-SSCCEEEECTTCCEEEECCCC
T ss_pred CC-CCCEEEEecCCcEEEEEeecC
Confidence 99 999999999999999999853
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-59 Score=571.08 Aligned_cols=558 Identities=12% Similarity=0.182 Sum_probs=477.4
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCC----CeeecccceeecccccCccccccccccCCCC-EEEEEEcC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR----DRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSP 416 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp 416 (1096)
.|.+.|++++|+|+|+ +||+|+ ++.|+|||+.++ +... .+.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 4788999999999999 688886 899999999987 5443 27889999 99999999
Q ss_pred --CCCEEEEEECCCeEEEEEccCCC-----ccccceeecccccCEEEEEEecCCCcEEEEEEeCC----CcEEEEEcCCc
Q 001343 417 --DGNYVGVAFTKHLIQLYSYAGSN-----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGR 485 (1096)
Q Consensus 417 --d~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~ 485 (1096)
++++||+|+.||.|++||+.+++ .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE-CCC
Confidence 99999999999999999997651 1122235778999999999999999 88999887 6888888 677
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCc-EEEEEECCCeEEEEEcCCCCeeeEEeCCCC---cEEEEEEcCC-CCEEEEEeecc
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSAD-GSRLFSCGTSK 560 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~-~~~l~~~~~~~ 560 (1096)
.+..+.+|...|.+++|+|. +. .+++++.||.|++||+.+.+....+..|.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--
T ss_pred cceeeecCCccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC--
Confidence 88999999999999999874 44 899999999999999999988889988888 9999999999 999999987
Q ss_pred CCCCeEEEEeCCCCeeeEEE-c---CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC--CCCccE
Q 001343 561 DGDSFLVEWNESEGTIKRTY-A---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPR 634 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~-~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~ 634 (1096)
++.|++||+.+++.+..+ . .|.. .+.+++|+ ++.++++++.|+.|++||+.+++.+..+..+.. ...+.+
T Consensus 228 --dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 303 (615)
T 1pgu_A 228 --DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303 (615)
T ss_dssp --TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred --CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeE
Confidence 999999999999999998 5 6665 89999999 999999999999999999999999988886631 125677
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCc
Q 001343 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~ 714 (1096)
+.|. ++.++++++.|+.|++||+.++ +....+.++. ..|.+++| |+
T Consensus 304 ~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~-----~~v~~~~~-~~-------------------------- 349 (615)
T 1pgu_A 304 VVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHN-----KGITALTV-NP-------------------------- 349 (615)
T ss_dssp EEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCS-----SCEEEEET-TT--------------------------
T ss_pred EEeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCC-----CCEEEEEe-cC--------------------------
Confidence 8886 8899999999999999999876 5555665553 34666666 54
Q ss_pred ccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeecc
Q 001343 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 794 (1096)
Q Consensus 715 ~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~ 794 (1096)
+++++.||.|++|++. .+. .+ |...|.+++| +++..+++++.|+.+++|++.
T Consensus 350 --------------l~~~~~dg~i~~w~~~---------~~~-~~---~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~ 401 (615)
T 1pgu_A 350 --------------LISGSYDGRIMEWSSS---------SMH-QD---HSNLIVSLDN-SKAQEYSSISWDDTLKVNGIT 401 (615)
T ss_dssp --------------TEEEETTSCEEETTTT---------EEE-CC---CCSCEEEEEC-CSTTCCEEEETTTEEEETTEE
T ss_pred --------------cEEECCCCeEEEEEch---------hhc-Cc---ccCceEEEEE-CCCcEEEEEeCCCCEEEEEcc
Confidence 4678888999999975 223 55 9999999999 667779999999999999863
Q ss_pred CCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCC
Q 001343 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA 874 (1096)
Q Consensus 795 ~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~ 874 (1096)
... ....+.+++++|++++++++.++.+.+|++.+++.+..+. |...
T Consensus 402 ~~~--------------------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 448 (615)
T 1pgu_A 402 KHE--------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSP 448 (615)
T ss_dssp EEE--------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred cCc--------------------------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCC
Confidence 311 1125778999999999999988999999999999988886 8889
Q ss_pred eeEEEEecCCCcEEEEeeC-CCeEEEEeeccceeeeeeccccccccceee-ecCCCCCCCCCceEEEecCCcEEEE-Eec
Q 001343 875 STFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDELCVWSIDTWEKRKSVTI-HIPAGKTPTGDTRVQFNADQVRMLV-VHE 951 (1096)
Q Consensus 875 i~~l~~s~~d~~~l~s~~~-dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~~l~~-~~d 951 (1096)
+.+++|+ +++|++++. ||.|++||+.++. .. ..+.+|.. .|.+++|+|+|++|++ +.|
T Consensus 449 ~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~---------------~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~d 509 (615)
T 1pgu_A 449 GSAVSLS---QNYVAVGLEEGNTIQVFKLSDLE---------------VSFDLKTPLRA-KPSYISISPSETYIAAGDVM 509 (615)
T ss_dssp EEEEEEC---SSEEEEEETTTSCEEEEETTEEE---------------EEEECSSCCSS-CEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEc---CCEEEEeecCCCeEEEEECCCcc---------------ccccccCCccC-ceEEEEECCCCCEEEEcCCC
Confidence 9999998 669999999 9999999999876 11 56667776 9999999999999999 789
Q ss_pred ceEEEEEcccceeccccccCCCCCCCceEEEEee----------CCcEEEEEecCCcEEEEecCCC-ceeEEEccccccC
Q 001343 952 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSC----------NSQLVFATFCDGNIGVFDADTL-RLRCYIAPSTYLS 1020 (1096)
Q Consensus 952 ~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~----------dg~~la~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~ 1020 (1096)
+.|++||+.+++++..+...| ...|.+++|+| ++++||+++.||.|++||+.++ +....+.
T Consensus 510 g~i~iw~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------ 581 (615)
T 1pgu_A 510 GKILLYDLQSREVKTSRWAFR--TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN------ 581 (615)
T ss_dssp SCEEEEETTTTEEEECCSCCC--SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT------
T ss_pred CeEEEeeCCCCcceeEeecCC--CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh------
Confidence 999999999999988887634 89999999999 9999999999999999999998 4544332
Q ss_pred CCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 1021 PSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 1021 ~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
+ |...|+ +++|+| ++. |++++.||+|++|++..
T Consensus 582 -~---h~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 582 -A---HKDGVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -S---STTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred -c---CccceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 3 888999 599999 888 99999999999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-56 Score=556.16 Aligned_cols=607 Identities=12% Similarity=0.089 Sum_probs=447.3
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
....+|.+.|+|++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 44467999999999999999 79999999999999988766543 223788999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE---------
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--------- 487 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~--------- 487 (1096)
|++|++++.|++|++||+.+++.+.. +. |.+.|++++|+|+++ +|++|+.||+|++|| .++++.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~~---~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLTT---VF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEEE---EE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEEE---Ec-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 88999999999999999999877663 43 778999999999999 899999999999999 665543
Q ss_pred --EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC------------------CCcEEEEEEc
Q 001343 488 --FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------------GHWCTTMLYS 547 (1096)
Q Consensus 488 --~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~l~~s 547 (1096)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 234679999999999884 24689999999999 9999998877777655 3579999999
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE--Ec---Cc------------CccceEEEEEeC----CC-CEEEEEEc
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--YA---GF------------RKKSNGVVQFDT----TQ-NHFLAVGE 605 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~------------~~~~i~~~~~~~----~~-~~l~~~~~ 605 (1096)
|+|++|++++. |+.|++||+++++.+.. +. .| ....|.+++|++ ++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999997 99999999999987754 21 22 122688999964 43 45666766
Q ss_pred C-----CeEEEEeCC------------------CCeEEEEeecCCCCCCccEEEEeC----------CCCEEEEEECCCc
Q 001343 606 D-----SQIKFWDMD------------------NVNILTSTDAEGGLPNLPRLRFSK----------EGNLLAVTTADNG 652 (1096)
Q Consensus 606 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~ 652 (1096)
+ +.+.+|++. +.+....+... +...|.++.+.+ +...+++++.|+.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22233344321 123677888765 3447899999999
Q ss_pred EEEEEcCCCccccccccCCC-cccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccc
Q 001343 653 FKILANAIGLRSLRAVENPP-FEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTV 731 (1096)
Q Consensus 653 i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 731 (1096)
|++|++.++.........+. ...+...|+++++++...
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~----------------------------------------- 414 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN----------------------------------------- 414 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------------------------------------
T ss_pred EEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH-----------------------------------------
Confidence 99999977633322211111 111224566666654321
Q ss_pred cCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCcc
Q 001343 732 DDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ 811 (1096)
Q Consensus 732 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~ 811 (1096)
++|+...... .... ..+.| |...+.+++|+|+++.+++++.|++|++|++....... ..
T Consensus 415 -------~~w~~~~~~~-~~~~-~~l~G---~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~ 473 (902)
T 2oaj_A 415 -------KLWLGALSAA-QNKD-YLLKG---GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NA 473 (902)
T ss_dssp -------HHHHHHHHTT-BCCC-CSCCC---SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TB
T ss_pred -------HHHHHHHhcc-cCCC-CcccC---CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------Cc
Confidence 2233210000 0000 13455 77888899999999999999999999999986532100 00
Q ss_pred ccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccc----------------------------
Q 001343 812 HWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF---------------------------- 862 (1096)
Q Consensus 812 ~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~---------------------------- 862 (1096)
++... .....-.+ |...|.+++|+|||++||+|+ ||+|+|||+.++
T Consensus 474 ~~~~~---l~~~~~~~--h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (902)
T 2oaj_A 474 SFEVN---LSRTLNKA--KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNG 548 (902)
T ss_dssp CEEEE---HHHHTTCS--SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSC
T ss_pred eEEee---chhhcCCC--CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcc
Confidence 00000 00000013 889999999999999999999 799999999766
Q ss_pred -----------------eEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeec
Q 001343 863 -----------------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHI 925 (1096)
Q Consensus 863 -----------------~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~ 925 (1096)
+++..+.+|.+.|++|+||| || +||+|+.|++|+|||+.+.. .++. ..+..
T Consensus 549 ~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~-~~~~---------~~~~~ 616 (902)
T 2oaj_A 549 VLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPA-IIYM---------ENIRE 616 (902)
T ss_dssp SEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTE-EEEE---------EEGGG
T ss_pred ccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCe-EEEE---------eehhH
Confidence 34678889999999999999 89 99999999999999998765 1110 01234
Q ss_pred CC-CCCCCCCceEEEe-----cCC---cEEEE-EecceEEEEEc---ccceeccccccCCC--CCCCceEEE-Ee-----
Q 001343 926 PA-GKTPTGDTRVQFN-----ADQ---VRMLV-VHETQLAIYDA---SKMERIRQWTPQDA--LSAPISCAV-YS----- 984 (1096)
Q Consensus 926 ~~-~~~~~~v~~v~fs-----~dg---~~l~~-~~d~~i~iwd~---~~~~~~~~~~~~~~--~~~~i~~l~-~s----- 984 (1096)
+. +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|++..++.++.. +.+.|.+++ |+
T Consensus 617 ~~~gh~~-~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 695 (902)
T 2oaj_A 617 ISGAQSA-CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKS 695 (902)
T ss_dssp TCSSCCC-CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCC
T ss_pred hcccccc-ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCC
Confidence 54 7876 99999999 886 89999 78999999999 88888877765421 157788777 66
Q ss_pred -----------------eCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccce-EEE------ecCC
Q 001343 985 -----------------CNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPL-VVA------AHPL 1040 (1096)
Q Consensus 985 -----------------~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~-~l~------~s~~ 1040 (1096)
++|.+|+++ +..|+||++.++++..... + |...+.++ .+. |++
T Consensus 696 ~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-------~---~~~~~~~v~~~~~~~~~~~~~- 762 (902)
T 2oaj_A 696 SCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-------K---YPLAATGLSYISTVEKNNDRK- 762 (902)
T ss_dssp BCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC-------S---SCEEEEEEEEEEEECSSSCEE-
T ss_pred cccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc-------c---cceeeeEEEEEEecccccccc-
Confidence 566666654 7789999999998665432 1 44445531 135 777
Q ss_pred CCceEEEEeeCCcEEEEccCCCC--CccccCCCC
Q 001343 1041 EPNQFAIGLTDGSVKVMEPSESE--GKWGVSPPV 1072 (1096)
Q Consensus 1041 d~~~l~s~~~dg~i~vW~v~~~~--~~~~~~~~~ 1072 (1096)
++..|++++.||+|++|++.+.+ ...+.+++.
T Consensus 763 ~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~ 796 (902)
T 2oaj_A 763 NLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPI 796 (902)
T ss_dssp EEEEEEEEETTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CceEEEEEeCCCcEEEEECcchHHHhhccCCccc
Confidence 89999999999999999999988 444444433
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-56 Score=588.34 Aligned_cols=583 Identities=14% Similarity=0.181 Sum_probs=463.5
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|.+.|++++|+|||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 478899999999999999999999999999999999988766 5789999999999999999 89999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
| .+++.+..+.+|...|.+++|++..++.++++|+.||.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9 89999999999999999999998777789999999999999999999999999999999999999999999999987
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcC------------ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFR------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1096)
++.|++||+.+++....+.... ...+.+++|+|++..+++++ ++.+.+||+.++..+..+...
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~- 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG- 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-
Confidence 9999999999998877765321 12567789999999999887 689999999999888777632
Q ss_pred CCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeE-ecc
Q 001343 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV-ERS 706 (1096)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~-~~~ 706 (1096)
+...|.+++|+|++.++++++.||.|++|++.++ .....+.++. ..|.+++|+|+|+.++++...+...+ +..
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~-----~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHL-----SWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCc-----cceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 2348999999999999999999999999999887 5566666653 45788999888877644433222111 100
Q ss_pred CCCc--CCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeec
Q 001343 707 SPVR--PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (1096)
Q Consensus 707 ~~~~--~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 784 (1096)
.... ....-......+.+++..++.....+.+.++... .+.... . +...+.+++|+|++..+++++.
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~------~~~~i~~~~~sp~g~~l~~g~~ 981 (1249)
T 3sfz_A 913 KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK----TGQIDY-L------PEAQVSCCCLSPHLEYVAFGDE 981 (1249)
T ss_dssp HHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEES----SCCEEE-E------CCSCEEEEEECTTSSEEEEEET
T ss_pred ccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecC----cceEEE-c------ccCcEEEEEEcCCCCEEEEEcC
Confidence 0000 0000000001111112222222222222222221 111111 1 4567999999999999999999
Q ss_pred CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccce
Q 001343 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFK 863 (1096)
Q Consensus 785 dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~ 863 (1096)
+|.+++|++.. +.... .+.+ |...|++++|+|+|++|++++ ||.|++||+.+++
T Consensus 982 ~g~i~i~d~~~----------------------~~~~~-~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 982 DGAIKIIELPN----------------------NRVFS-SGVG--HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp TSCCEEEETTT----------------------TSCEE-ECCC--CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred CCCEEEEEcCC----------------------Cceee-eccc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 99999998643 22222 3444 899999999999999999998 7999999999988
Q ss_pred EEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCC
Q 001343 864 VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 943 (1096)
Q Consensus 864 ~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg 943 (1096)
... +..|...|.+++|+| ++ .+++++.||.|++||+.+++ .+..+.+|.. .|.+++|+|||
T Consensus 1037 ~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~~~~~---------------~~~~~~~~~~-~v~~~~~s~d~ 1097 (1249)
T 3sfz_A 1037 YVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNVITGR---------------IERDFTCHQG-TVLSCAISSDA 1097 (1249)
T ss_dssp EEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEETTTTC---------------CCEEEECCSS-CCCCEEECSSS
T ss_pred eEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEECCCCc---------------eeEEEcccCC-cEEEEEECCCC
Confidence 764 558999999999999 66 57889999999999999887 4556667776 89999999999
Q ss_pred cEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCC
Q 001343 944 VRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS 1022 (1096)
Q Consensus 944 ~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1022 (1096)
+++++ +.|+.|++||+.+++++..+..| ...|.+++|+|||++|++++.||.|++||+.+++....+.+.... ..
T Consensus 1098 ~~l~s~s~d~~v~iwd~~~~~~~~~l~~h---~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~ 1173 (1249)
T 3sfz_A 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGH---NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE-EG 1173 (1249)
T ss_dssp SSCEEECCSSCCCEECSSSSSCSBCCCCC---SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-----
T ss_pred CEEEEEcCCCcEEEEECCCcceeeeeccC---CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccc-cc
Confidence 99999 78999999999999988888765 889999999999999999999999999999999865443211100 01
Q ss_pred ccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCCC
Q 001343 1023 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1064 (1096)
Q Consensus 1023 ~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~~ 1064 (1096)
...|...|+ +++|+| |+.+|++++ |.|++||+.+++.
T Consensus 1174 ~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1174 TATHGGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp ---CCSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred ccccCceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 112888899 599999 999999885 8999999999874
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-54 Score=526.49 Aligned_cols=546 Identities=15% Similarity=0.218 Sum_probs=446.5
Q ss_pred CCceeecCCCce-eeecCCC--CcceEEeec-CCCc-eEEEEEcC--CCCcEEEEEeCCCeEEEEecCCCCeeeccccee
Q 001343 315 AEEVTYSSSRHQ-TWSLDDL--PRTVAVSLH-QGST-VISMDFHP--SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387 (1096)
Q Consensus 315 ~~~v~~~~~~~~-~~~~~~~--~~~~~~~l~-h~~~-V~~v~fsp--~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~ 387 (1096)
...+++..++.. +|++++. +......+. |... |++++|+| +|+ +||+|+.||.|+|||+.+++.......
T Consensus 30 g~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~-- 106 (615)
T 1pgu_A 30 TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEV-- 106 (615)
T ss_dssp TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEE--
T ss_pred CCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCcccccccc--
Confidence 334444443322 8988743 114555555 9999 99999999 999 799999999999999976511000000
Q ss_pred ecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCC
Q 001343 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN 463 (1096)
Q Consensus 388 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~ 463 (1096)
.....+.+|...|.+++|+|++++|++++.+ +.|++|| .++.+. .+.+|...|++++|+|++
T Consensus 107 ---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 107 ---------NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSR 172 (615)
T ss_dssp ---------EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSS
T ss_pred ---------cccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCC
Confidence 0011366799999999999999999999987 6888888 444444 578999999999999999
Q ss_pred CcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC---CeEEEEeeecCC-CcEEEEEECCCeEEEEEcCCCCeeeEE-e--
Q 001343 464 KLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA---PVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMGSRVDY-D-- 535 (1096)
Q Consensus 464 ~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~---~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-- 535 (1096)
+. .+++++.|+.|++|| .+++.+..+.+|.. .|.+++|+| + +.+|++++.||.|++||+++++....+ .
T Consensus 173 ~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 249 (615)
T 1pgu_A 173 PM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 249 (615)
T ss_dssp SC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCEEEECCBTT
T ss_pred Cc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCCCeEEEEECCCCCEeEEecccc
Confidence 75 699999999999999 88999999999999 999999987 5 689999999999999999999888888 5
Q ss_pred -CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC---ccceEEEEEeCCCCEEEEEEcCCeEEE
Q 001343 536 -APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1096)
Q Consensus 536 -~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i 611 (1096)
.|...|.+++|+ +++++++++. ++.|++||+.+++.+..+..+. ...+..+.+. ++.++++++.||.|++
T Consensus 250 ~~~~~~v~~~~~~-~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 250 EPVQGGIFALSWL-DSQKFATVGA----DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNF 323 (615)
T ss_dssp BCCCSCEEEEEES-SSSEEEEEET----TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEE
T ss_pred cccCCceEEEEEc-CCCEEEEEcC----CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEE
Confidence 788899999999 9999999987 8999999999999999988763 2356667775 8899999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCe
Q 001343 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1096)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 691 (1096)
||+.+++.+..+..+.. .|.+++| |+ +++++.||.|++|++. .+. .. +...|.+++| ++
T Consensus 324 ~d~~~~~~~~~~~~~~~--~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~--~~-----~~~~v~~~~~-~~--- 382 (615)
T 1pgu_A 324 YELGHDEVLKTISGHNK--GITALTV-NP---LISGSYDGRIMEWSSS----SMH--QD-----HSNLIVSLDN-SK--- 382 (615)
T ss_dssp EETTEEEEEEEECCCSS--CEEEEET-TT---TEEEETTSCEEETTTT----EEE--CC-----CCSCEEEEEC-CS---
T ss_pred EECCCCcEEEEEeCCCC--CEEEEEe-cC---cEEECCCCeEEEEEch----hhc--Cc-----ccCceEEEEE-CC---
Confidence 99999998888887655 8999999 88 9999999999999986 121 22 2345666666 22
Q ss_pred EEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEE
Q 001343 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1096)
Q Consensus 692 lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1096)
+..+++++.|+.+++|++... . ....+.+++
T Consensus 383 ----------------------------------~~~l~~~~~d~~i~~~~~~~~---------~------~~~~~~~~~ 413 (615)
T 1pgu_A 383 ----------------------------------AQEYSSISWDDTLKVNGITKH---------E------FGSQPKVAS 413 (615)
T ss_dssp ----------------------------------TTCCEEEETTTEEEETTEEEE---------E------CSSCEEEEE
T ss_pred ----------------------------------CcEEEEEeCCCCEEEEEcccC---------c------ccCCceEEE
Confidence 345578888999999998731 1 122678999
Q ss_pred EecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-
Q 001343 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT- 850 (1096)
Q Consensus 772 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~- 850 (1096)
++|++..++++ .++.+.+|++.. ++.+. .+. +...+.+++|+ +++|++++
T Consensus 414 ~s~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~-~~~---~~~~~~~~~~~--~~~l~~~~~ 464 (615)
T 1pgu_A 414 ANNDGFTAVLT-NDDDLLILQSFT----------------------GDIIK-SVR---LNSPGSAVSLS--QNYVAVGLE 464 (615)
T ss_dssp ECSSSEEEEEE-TTSEEEEEETTT----------------------CCEEE-EEE---CSSCEEEEEEC--SSEEEEEET
T ss_pred EcCCCCEEEEe-CCCceEEEeccC----------------------Cceee-ecc---cCCCceEEEEc--CCEEEEeec
Confidence 99999855555 788899988632 22222 122 67889999999 78888887
Q ss_pred -CCeEEEEEcccceEE-EeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCC
Q 001343 851 -GGKISLFNMMTFKVM-TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAG 928 (1096)
Q Consensus 851 -dg~v~iwd~~~~~~~-~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 928 (1096)
++.|++||+.+++.. ..+..|...|++++|+| ++++|++++.||.|++||+.+++ .+..+.+
T Consensus 465 ~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~ 528 (615)
T 1pgu_A 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSRE---------------VKTSRWA 528 (615)
T ss_dssp TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE---------------EEECCSC
T ss_pred CCCeEEEEECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCc---------------ceeEeec
Confidence 688999999888776 77889999999999999 99999999999999999999887 5566666
Q ss_pred -CCCCCCceEEEec----------CCcEEEE-EecceEEEEEcccc-eeccccccCCCCCCCceEEEEeeCCcEEEEEec
Q 001343 929 -KTPTGDTRVQFNA----------DQVRMLV-VHETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 995 (1096)
Q Consensus 929 -~~~~~v~~v~fs~----------dg~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~ 995 (1096)
|.. .|++++|+| ++++|++ +.|+.|++||+.++ +++..+..| ...|.+++|+|+++ |++++.
T Consensus 529 ~h~~-~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~-l~s~~~ 603 (615)
T 1pgu_A 529 FRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPST-LVSSGA 603 (615)
T ss_dssp CCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS---TTCEEEEEEEETTE-EEEEET
T ss_pred CCCC-ceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC---ccceEEEEEcCCCC-eEEecC
Confidence 776 999999999 9999999 78999999999998 666666654 89999999999999 999999
Q ss_pred CCcEEEEecCC
Q 001343 996 DGNIGVFDADT 1006 (1096)
Q Consensus 996 dg~i~vwd~~~ 1006 (1096)
||.|++|+++.
T Consensus 604 d~~v~iw~~~~ 614 (615)
T 1pgu_A 604 DACIKRWNVVL 614 (615)
T ss_dssp TSCEEEEEEC-
T ss_pred CceEEEEeeec
Confidence 99999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=505.58 Aligned_cols=604 Identities=10% Similarity=0.036 Sum_probs=408.1
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
+|+... .++...+.|...|++++|+| |+ +|++|+.|++|+|||+.+++.+.. +. |.
T Consensus 43 lw~~~~--~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~-------------------~~-~~ 98 (902)
T 2oaj_A 43 IYGQQQ--VEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTT-------------------VF-VP 98 (902)
T ss_dssp EECSTT--CEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEE-------------------EE-CS
T ss_pred EEeCCC--cEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEE-------------------Ec-CC
Confidence 777643 45566677999999999999 88 799999999999999999887653 22 66
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccc-c-------eeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-H-------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~-~-------~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
..|++++|+|++++|++|+.||.|++||+.+++.... . ..+.+|.+.|++++|+|++.. .|++|+.|+.|
T Consensus 99 ~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~-~l~~g~~dg~v- 176 (902)
T 2oaj_A 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG-TVLISYEYVTL- 176 (902)
T ss_dssp SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE-EEEEECSSCEE-
T ss_pred CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC-EEEEEeCCCcE-
Confidence 7899999999999999999999999999998764310 0 235789999999999997533 78999999999
Q ss_pred EEE-cCCceEEEeeCC------------------CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe----
Q 001343 479 VWE-LSGRKLFNFEGH------------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---- 535 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---- 535 (1096)
+|| .+++++..+.+| ...|++++|+| +|.+|++++.||+|++||+++++.+....
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~ 254 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFET 254 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCS
T ss_pred EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEEeeccc
Confidence 999 888888888766 57799999977 67899999999999999999877654321
Q ss_pred -C-------------CCCcEEEEEEc----CCC-CEEEEEeeccC-CCCeEEEEeCC------------------CCeee
Q 001343 536 -A-------------PGHWCTTMLYS----ADG-SRLFSCGTSKD-GDSFLVEWNES------------------EGTIK 577 (1096)
Q Consensus 536 -~-------------~~~~i~~l~~s----~~~-~~l~~~~~~~~-~~~~i~iwd~~------------------~~~~~ 577 (1096)
. +...|.+++|+ |++ ..+++++.+.. ....+.+|++. +++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM 334 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccce
Confidence 1 23479999995 444 34555544211 12478888842 22334
Q ss_pred EEEcCcCccceEEEEEeC----------CCCEEEEEEcCCeEEEEeCCCCeEEEEe-----ecCCCCCCccEEEEeCCCC
Q 001343 578 RTYAGFRKKSNGVVQFDT----------TQNHFLAVGEDSQIKFWDMDNVNILTST-----DAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~ 642 (1096)
+.+.......+..+.+.+ +...+++++.||.|++|++.++...... ....+...|++++|++...
T Consensus 335 ~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~ 414 (902)
T 2oaj_A 335 KIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN 414 (902)
T ss_dssp EEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH
T ss_pred EEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH
Confidence 444421222566676654 3447899999999999999877543320 1111123566666543210
Q ss_pred EEEEEECCCcEEEEEcC-----CCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccC
Q 001343 643 LLAVTTADNGFKILANA-----IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~ 717 (1096)
++|+.. .+...+. ++.. .+..++|+
T Consensus 415 -----------~~w~~~~~~~~~~~~~l~---G~~~-----~v~sv~~s------------------------------- 444 (902)
T 2oaj_A 415 -----------KLWLGALSAAQNKDYLLK---GGVR-----TKRQKLPA------------------------------- 444 (902)
T ss_dssp -----------HHHHHHHHTTBCCCCSCC---CSBC-----CCCCCCCC-------------------------------
T ss_pred -----------HHHHHHHhcccCCCCccc---CCcC-----CCCccccc-------------------------------
Confidence 111100 0111111 1111 12223333
Q ss_pred CCCccCCCCCCccccCCCCCccceeeeeeecC-CceEEEEcC-----CCCCCcccEEEEEEecCCceEEEeecCCeEEEe
Q 001343 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS-GQCRLVTMP-----ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1096)
Q Consensus 718 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~-----~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw 791 (1096)
||++++++++.|++|++||+...... .......+. + |...|.+++|+||++.|++++.||+|++|
T Consensus 445 ------pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~---h~~~V~svafspdg~~LAsgs~DgtV~lw 515 (902)
T 2oaj_A 445 ------EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA---KELAVDKISFAAETLELAVSIETGDVVLF 515 (902)
T ss_dssp ------SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS---SSCCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ------ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC---CCCceeEEEecCCCCeEEEEecCcEEEEE
Confidence 33444466677777777776532100 011111111 4 88899999999999999999999999999
Q ss_pred eccCCccCCC-------C-ce------eeecC---cccc-----ccCccccccccccCCCcCCCeeeeeecCCCcEEEEe
Q 001343 792 KWHRNEQNPS-------G-KA------TASAV---PQHW-----LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (1096)
Q Consensus 792 ~~~~~~~~~~-------g-~~------~~~~~---i~~w-----~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~ 849 (1096)
++....+... . .. +.... ..+. ....+......+.+ |...|++++||||| +||+|
T Consensus 516 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsg 592 (902)
T 2oaj_A 516 KYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIA 592 (902)
T ss_dssp EEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEE
T ss_pred EecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEE
Confidence 9976421000 0 00 00000 0000 00111111224566 99999999999999 99999
Q ss_pred c-CCeEEEEEcccceEEE-----eec-CCCCCeeEEEEe-----cCCC---cEEEEeeCCCeEEEEee---ccceeeeee
Q 001343 850 T-GGKISLFNMMTFKVMT-----TFM-SPPPASTFLAFH-----PQDN---NIIAIGTEDSTIHIYNV---RVDELCVWS 911 (1096)
Q Consensus 850 ~-dg~v~iwd~~~~~~~~-----~~~-~h~~~i~~l~~s-----~~d~---~~l~s~~~dg~i~iw~~---~~~~~~~w~ 911 (1096)
+ |++|+|||+.++..+. .+. +|.+.|++|+|+ | |+ ++|++|+.|++|++||+ .+++ +
T Consensus 593 s~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~-~--- 667 (902)
T 2oaj_A 593 YAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGK-F--- 667 (902)
T ss_dssp ETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGC-E---
T ss_pred eCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEEEEEecCCCCc-E---
Confidence 9 7999999998877653 343 899999999999 8 64 89999999999999999 6655 2
Q ss_pred ccccccccceeeecCCCCC----CCCCceEE-Ee----------------------cCCcEEEEEecceEEEEEccccee
Q 001343 912 IDTWEKRKSVTIHIPAGKT----PTGDTRVQ-FN----------------------ADQVRMLVVHETQLAIYDASKMER 964 (1096)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~----~~~v~~v~-fs----------------------~dg~~l~~~~d~~i~iwd~~~~~~ 964 (1096)
...+.+|. .+.|..+. |+ ++|..|+++ +..++||++.++++
T Consensus 668 -----------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~ 735 (902)
T 2oaj_A 668 -----------DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKS 735 (902)
T ss_dssp -----------EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCE
T ss_pred -----------EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccc
Confidence 22222221 02555555 54 556555555 88999999999999
Q ss_pred ccccccCCCCCCCceEE---E------EeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEE
Q 001343 965 IRQWTPQDALSAPISCA---V------YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1035 (1096)
Q Consensus 965 ~~~~~~~~~~~~~i~~l---~------~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l 1035 (1096)
.+....+ ...+.++ . |+++|..|++++.||.|++|++.+++.+......... ....+.. .
T Consensus 736 ~~k~~~~---~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~------~~~~~~~--~ 804 (902)
T 2oaj_A 736 THKGFKY---PLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPI------AAKYITE--S 804 (902)
T ss_dssp EEEECSS---CEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCC------CHHHHTT--C
T ss_pred eeeEccc---ceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCccc------ccccccc--e
Confidence 8877544 4455555 5 7899999999999999999999999977665532211 1112332 5
Q ss_pred EecCCCCceEEEEe
Q 001343 1036 AAHPLEPNQFAIGL 1049 (1096)
Q Consensus 1036 ~~s~~d~~~l~s~~ 1049 (1096)
.|.+ +|+.|.-.+
T Consensus 805 ~~~~-~G~~~~~~~ 817 (902)
T 2oaj_A 805 SVLR-NGDIAIRVS 817 (902)
T ss_dssp EECT-TSCEEEECS
T ss_pred EEcC-CCCEEEEeC
Confidence 7777 788776544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=480.54 Aligned_cols=574 Identities=14% Similarity=0.181 Sum_probs=419.9
Q ss_pred EEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
.+++. |.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|+|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~ 65 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIA 65 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEG
T ss_pred ceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeC
Confidence 44555 999999999999999 799999999999999999887653 678999999999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-ceEEEeeCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHE 494 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~~~ 494 (1096)
++++|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ .|++++.||.|++|| .++ .....+.+|.
T Consensus 66 ~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 140 (814)
T 3mkq_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (814)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence 99999999999999999999987766 5778999999999999999 899999999999999 655 6778889999
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcC--CCCEEEEEeeccCCCCeEEEEeC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~--~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.+|.+++|+|. ++..+++++.||+|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||+
T Consensus 141 ~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~ 215 (814)
T 3mkq_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDY 215 (814)
T ss_dssp SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEET
T ss_pred CcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEEC
Confidence 99999999873 45799999999999999999888877776655 7899999999 9999999986 999999999
Q ss_pred CCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC--EEEEEEC
Q 001343 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTA 649 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~ 649 (1096)
.+++.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++. +++++ .
T Consensus 216 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~-~ 291 (814)
T 3mkq_A 216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG-F 291 (814)
T ss_dssp TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEE-E
T ss_pred CCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEE-e
Confidence 99999999999877 899999999999999999999999999999999998887755 899999999986 35544 5
Q ss_pred CCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCc
Q 001343 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (1096)
Q Consensus 650 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 729 (1096)
++.+.+|++..+ ...+.++|+|+.+++........ . +
T Consensus 292 ~~~~~~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~~~------------------------~-~ 328 (814)
T 3mkq_A 292 DNGFTVLSLGND------------------EPTLSLDPVGKLVWSGGKNAAAS------------------------D-I 328 (814)
T ss_dssp TTEEEEEECSCC------------------SCCEEECSSSEEEEECCTTSCTT------------------------C-E
T ss_pred CCCEEEEEcCCC------------------CceeEECCCCCEEEECcccccce------------------------e-e
Confidence 667889987544 12367888888775543321000 0 0
Q ss_pred cccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecC
Q 001343 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1096)
Q Consensus 730 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~ 809 (1096)
..... -..|++.... ........+.. +...+.+++|+|+|+.+++++ ++.+.+|++..
T Consensus 329 ~~~~~---~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~-------------- 386 (814)
T 3mkq_A 329 FTAVI---RGNEEVEQDE-PLSLQTKELGS---VDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA-------------- 386 (814)
T ss_dssp EEEEC---CSCCCCCSSS-CBCCCCEEECC---CSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT--------------
T ss_pred eeeec---ccccccccCc-cceeeeecCCC---CccCCceeEECCCCCEEEEec-CCEEEEEECcc--------------
Confidence 00000 0011111000 00111112233 667889999999999777776 89999998632
Q ss_pred ccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCC---
Q 001343 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN--- 885 (1096)
Q Consensus 810 i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~--- 885 (1096)
|. .. +.+.+.+++|+|||+++|+++ +|.|++|+ .+.+|...+.+++|+| ++
T Consensus 387 ---~~-----------~~--~~~~i~~~~~spdg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~-dg~~~ 441 (814)
T 3mkq_A 387 ---WR-----------NK--AFGKCQDFVWGPDSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAI-DRLFS 441 (814)
T ss_dssp ---TE-----------EE--EEEECSEEEECTTSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCC-CEEEC
T ss_pred ---cc-----------cc--CCCceEEEEEeCCCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCc-cceec
Confidence 10 00 446788999999999999998 69999996 3456888899999999 77
Q ss_pred cEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEE------ecceEEEEEc
Q 001343 886 NIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV------HETQLAIYDA 959 (1096)
Q Consensus 886 ~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~------~d~~i~iwd~ 959 (1096)
.+|++++.|+.|++||+.+++ .+..+.++. ..+.|+|||++|+++ .++.+.+|..
T Consensus 442 ~~l~~~~~d~~v~~~d~~~~~---------------~~~~~~~~~----~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 442 GALLGVKSDGFVYFFDWDNGT---------------LVRRIDVNA----KDVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp SSSEEEEETTEEEEECTTTCC---------------EEEEESSCE----EEEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred ceEEEEecCCEEEEEECCcCc---------------EEEEEecCC----CEEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 589999999999999999887 445555543 389999999999996 5666666644
Q ss_pred ccceeccccccC-----CCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceE
Q 001343 960 SKMERIRQWTPQ-----DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1034 (1096)
Q Consensus 960 ~~~~~~~~~~~~-----~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~ 1034 (1096)
..+.....+... .+.......+. + -+..+.++..++.+.+|....+++............. ....+. .
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~---~~~~~~--~ 575 (814)
T 3mkq_A 503 NKDAYLEAANNGNIDDSEGVDEAFDVLY-E-LSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAH---YTKEMY--L 575 (814)
T ss_dssp CHHHHHHHHHHTCCBTTTBCTTTEEEEE-E-ECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEE---CSSCCE--E
T ss_pred chHHhhhhhhccCCccccchhhheeeee-E-eccEEEeeEEeCCEEEEEcCCCeEEEEeCCeeEEEEE---CCccEE--E
Confidence 322211111000 00000000000 0 0111222333344444443222221111100000000 223444 3
Q ss_pred EEecCCCCceEEEEeeCCcEEEEccCCC
Q 001343 1035 VAAHPLEPNQFAIGLTDGSVKVMEPSES 1062 (1096)
Q Consensus 1035 l~~s~~d~~~l~s~~~dg~i~vW~v~~~ 1062 (1096)
+.|.+ +++.++....++.++.|++...
T Consensus 576 ~~~~~-~~~~l~~~d~~~~~~~~~l~~~ 602 (814)
T 3mkq_A 576 LGYLA-RDNKVYLADREVHVYGYEISLE 602 (814)
T ss_dssp EEEEG-GGTEEEEECTTCCEEEEECCHH
T ss_pred EEEEe-cCCEEEEEcCCCCEEEEEECcH
Confidence 66777 7888988899999999997643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=455.49 Aligned_cols=464 Identities=15% Similarity=0.185 Sum_probs=383.3
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|.+.|.+++|+|++++||+|+.||.|+|||+.+++.+. .+.+|.+.|++++|+|+++ +|++|+.||.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 478899999999999999999999999999999999987666 5778999999999999999 89999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcC-CCCEEEEEe
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSCG 557 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~ 557 (1096)
| .+++.+..+.+|...|++++|+| ++.+|++++.||.|++||+++. .....+..|...|.+++|+| ++..+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9 89999999999999999999987 6689999999999999999987 55567788899999999999 888999988
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC--CCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
. ++.|++||+.++.....+..+....+..++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.++
T Consensus 161 ~----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~ 234 (814)
T 3mkq_A 161 L----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFA 234 (814)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEE
T ss_pred C----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEE
Confidence 7 999999999999888888877755889999999 999999999999999999999999998887765 89999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcc
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~ 715 (1096)
+|+|++.++++++.||.|++||+.++ +...
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~------------------------------------------------- 264 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY-KVEK------------------------------------------------- 264 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC-SEEE-------------------------------------------------
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC-cEEE-------------------------------------------------
Confidence 99999999999999999999998655 1111
Q ss_pred cCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceE-EEeecCCeEEEeecc
Q 001343 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL-LALGSNGVQKLWKWH 794 (1096)
Q Consensus 716 ~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l-~~~~~dg~v~vw~~~ 794 (1096)
.+.. +...+.+++|+|++..+ ++++.++.+.+|++.
T Consensus 265 ----------------------------------------~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 265 ----------------------------------------TLNV---GLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp ----------------------------------------EECC---SSSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred ----------------------------------------Eeec---CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence 1112 56688899999998753 667777788888752
Q ss_pred CCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC-C---eEEE------EEcccceE
Q 001343 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-G---KISL------FNMMTFKV 864 (1096)
Q Consensus 795 ~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d-g---~v~i------wd~~~~~~ 864 (1096)
. ....+.++|+|+++++++. . .+.. |++..+..
T Consensus 302 ~-------------------------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (814)
T 3mkq_A 302 N-------------------------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEP 344 (814)
T ss_dssp C-------------------------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSC
T ss_pred C-------------------------------------CCceeEECCCCCEEEECcccccceeeeeeecccccccccCcc
Confidence 1 1234778899999888762 2 1222 33333332
Q ss_pred E----EeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEe
Q 001343 865 M----TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 940 (1096)
Q Consensus 865 ~----~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs 940 (1096)
. ..+..+...+.+++|+| +++++++++ ||.+.+|++.... .. +. +.+.+++|+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~---------------~~-----~~-~~i~~~~~s 401 (814)
T 3mkq_A 345 LSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWR---------------NK-----AF-GKCQDFVWG 401 (814)
T ss_dssp BCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTE---------------EE-----EE-EECSEEEEC
T ss_pred ceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccc---------------cc-----CC-CceEEEEEe
Confidence 2 34456677899999999 999999998 8999999976543 00 01 278899999
Q ss_pred cCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCC---cEEEEEecCCcEEEEecCCCceeEEEccc
Q 001343 941 ADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS---QLVFATFCDGNIGVFDADTLRLRCYIAPS 1016 (1096)
Q Consensus 941 ~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg---~~la~~~~dg~i~vwd~~~~~~~~~~~~~ 1016 (1096)
|||+++++ +.++.+++|+.- ..+ ...+.+++|+||| ++|++++.|+.|++||+.+++....+..
T Consensus 402 pdg~~la~~~~~g~v~l~~~~--------~~~---~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~- 469 (814)
T 3mkq_A 402 PDSNSYALIDETGQIKYYKNF--------KEV---TSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDV- 469 (814)
T ss_dssp TTSSCEEEECTTCCEEEEETT--------EEC---TTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESS-
T ss_pred CCCCeEEEEeCCCcEEEEECC--------CCc---cceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEec-
Confidence 99999999 688999999633 222 6778899999999 6888899999999999999997776652
Q ss_pred cccCCCccCCCccccceEEEecCCCCceEEEE------eeCCcEEEE
Q 001343 1017 TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG------LTDGSVKVM 1057 (1096)
Q Consensus 1017 ~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~------~~dg~i~vW 1057 (1096)
|.. .+.|+| ||++|+++ +.++.+.+|
T Consensus 470 ---------~~~-----~v~~s~-dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 470 ---------NAK-----DVIWSD-NGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp ---------CEE-----EEEECT-TSSEEEEEECCCSSCSCSEEEEE
T ss_pred ---------CCC-----EEEEcC-CCCEEEEEEcCcccCCceEEEEE
Confidence 222 489999 99999999 555555554
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=412.78 Aligned_cols=283 Identities=21% Similarity=0.381 Sum_probs=264.9
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+|.++|++++|+|+++ +||+|+.||+|+|||+.+++.... +.+|...|.+++|+|++++|
T Consensus 106 gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEE
Confidence 5889999999999999 799999999999999999887643 78899999999999999999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++|+.|++|++||+.+++++. .+.+|...|.+++|+|++. +|++|+.|++|++|| .++.++..+.+|...|.++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 999999999999999887766 5789999999999999999 899999999999999 8999999999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC--------------------CCEEEEEeecc
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--------------------GSRLFSCGTSK 560 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--------------------~~~l~~~~~~~ 560 (1096)
.+++ ++.+|++|+.||+|++||+.+......+..|...|.+++|+|+ +.++++++.
T Consensus 241 ~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~-- 316 (410)
T 1vyh_C 241 RPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-- 316 (410)
T ss_dssp EECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--
T ss_pred EECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC--
Confidence 9866 6789999999999999999999999999999999999999996 678999987
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
++.|++||+.++.++..+.+|.. .+.+++|+|++.+|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+
T Consensus 317 --D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~ 391 (410)
T 1vyh_C 317 --DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKT 391 (410)
T ss_dssp --TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSS
T ss_pred --CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCC
Confidence 99999999999999999999987 899999999999999999999999999999999999988765 8999999999
Q ss_pred CCEEEEEECCCcEEEEEc
Q 001343 641 GNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd~ 658 (1096)
+.+|++|+.||.|++|+.
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999986
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=358.70 Aligned_cols=292 Identities=15% Similarity=0.222 Sum_probs=264.4
Q ss_pred cceEEee-cCCCceEEEEEcCC----CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCE
Q 001343 335 RTVAVSL-HQGSTVISMDFHPS----HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 335 ~~~~~~l-~h~~~V~~v~fsp~----g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
+.+...+ +|.+.|++++|+|+ +. +||+|+.|++|+||++.+++.... ..+.+|...|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v 83 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGV 83 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCE
Confidence 3444544 49999999999985 45 799999999999999987654321 1278899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE
Q 001343 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1096)
Q Consensus 410 ~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 488 (1096)
.+++|++++.++++|+.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++|| .+++...
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeE
Confidence 999999999999999999999999999987766 5778999999999999999 899999999999999 8899999
Q ss_pred EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
.+..|...|.+++|+| ++++|++|+.||.|++||+++++....+..|...|.+++|+|++++|++++. ++.|++
T Consensus 159 ~~~~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~i 232 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKI 232 (321)
T ss_dssp EEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEE
T ss_pred EecCCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEE
Confidence 9999999999999977 6789999999999999999999988899999999999999999999999987 999999
Q ss_pred EeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
||+++++....+.+|.. .+.+++|+|++.+|++++.|+.|++||+.+++.+..+..+.. .|.+++|+|++.+|++++
T Consensus 233 wd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEE
T ss_pred EECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEe
Confidence 99999999999999987 899999999999999999999999999999999999887755 899999999999999999
Q ss_pred CCCcEEEEEc
Q 001343 649 ADNGFKILAN 658 (1096)
Q Consensus 649 ~dg~i~iwd~ 658 (1096)
.|+.|++||.
T Consensus 310 ~d~~i~vwd~ 319 (321)
T 3ow8_A 310 DDQEIHIYDC 319 (321)
T ss_dssp TTCCEEEEEC
T ss_pred CCCeEEEEeC
Confidence 9999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=358.33 Aligned_cols=292 Identities=18% Similarity=0.286 Sum_probs=262.8
Q ss_pred cceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 335 ~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
.+...++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence 34455665 999999999999999 799999999999999998887653 667999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEccCCCc-cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee
Q 001343 414 WSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1096)
Q Consensus 414 ~spd~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 491 (1096)
|+|++++|++|+.|+.|++|++.++.. ......+.+|.+.|.++.|++++. +++++.|++|++|| .+++++..+.
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999987642 223335789999999999998874 88999999999999 8899999999
Q ss_pred CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
+|...|.+++|+| ++.++++|+.||+|++||++++.....+..|...|.+++|+|+++++++++. ++.|++||+
T Consensus 182 ~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~ 255 (340)
T 1got_B 182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEEC
Confidence 9999999999977 6689999999999999999999999999999999999999999999999987 999999999
Q ss_pred CCCeeeEEEcCcC-ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 572 SEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 572 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
++++.+..+..+. ...+.+++|+|+++++++|+.||.|++||+.+++.+..+.+|.. .|.+++|+|++.+|++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCC
Confidence 9998887775432 12688999999999999999999999999999999999888765 89999999999999999999
Q ss_pred CcEEEEE
Q 001343 651 NGFKILA 657 (1096)
Q Consensus 651 g~i~iwd 657 (1096)
+.|++||
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=358.12 Aligned_cols=294 Identities=17% Similarity=0.253 Sum_probs=264.1
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
....++. |.+.|+|++|+|+++ +||+|+.||+|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 4455665 999999999999998 799999999999999988876643 5568889999999
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCc---cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~ 490 (1096)
+|+|.+|++|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++|| .+++++..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 122335778999999999999999 899999999999999 899999999
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
.+|...|.+++++|.+++.+|++|+.||+|++||+++++....+..|...|.+++|+|++.++++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999998777889999999999999999999999999999999999999999999999997 99999999
Q ss_pred CCCCeeeEEEcCcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC
Q 001343 571 ESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
+++++.+..+..+.. ..+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|++.+|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcC
Confidence 999988877765432 2578899999999999999999999999999999988877755 8999999999999999999
Q ss_pred CCcEEEEE
Q 001343 650 DNGFKILA 657 (1096)
Q Consensus 650 dg~i~iwd 657 (1096)
|+.|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=350.36 Aligned_cols=299 Identities=21% Similarity=0.283 Sum_probs=259.3
Q ss_pred eEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 337 VAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 337 ~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
+..++. |.+.|++++|+|++..+|++|+.|++|++|++......... +...+.+|...|.+++|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~s 74 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTLT 74 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEEC
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEEC
Confidence 344555 99999999999987458999999999999998754322110 112378999999999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA 495 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~ 495 (1096)
|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||..++++..+.+|..
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~~~~~~~~h~~ 149 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQCLATLLGHND 149 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSCEEEEECCCSS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeccCC
Confidence 999999999999999999999987765 5789999999999999999 89999999999999977889999999999
Q ss_pred CeEEEEeeecC----CCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 496 PVYSICPHHKE----NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 496 ~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.|.++.+.|.. ++..+++++.|++|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++||+
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~ 225 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNL 225 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEET
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEEC
Confidence 99999998743 3458999999999999999998888889999999999999999999999997 999999999
Q ss_pred CCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC------CCCCccEEEEeCCCCEEE
Q 001343 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG------GLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~ 645 (1096)
.+++.+..+..+. .+.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|+|++|+
T Consensus 226 ~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 302 (319)
T 3frx_A 226 AAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302 (319)
T ss_dssp TTTEEEEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE
T ss_pred CCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEE
Confidence 9999999988653 68899999999998888754 69999999887777665321 233688999999999999
Q ss_pred EEECCCcEEEEEcCCC
Q 001343 646 VTTADNGFKILANAIG 661 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~~~ 661 (1096)
+|+.||.|++||+.++
T Consensus 303 sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 303 AGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETTSCEEEEEEEEC
T ss_pred EeecCceEEEEEEeec
Confidence 9999999999998654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=347.20 Aligned_cols=290 Identities=18% Similarity=0.297 Sum_probs=255.2
Q ss_pred eEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 337 VAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 337 ~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
+.+++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~ 64 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEe
Confidence 345555 999999999999999 799999999999999999887653 67799999999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-ceEEEeeCC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGH 493 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~~ 493 (1096)
|++++|++|+.|++|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++|+.|++|++|| .++ .....+.+|
T Consensus 65 ~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhccc
Confidence 999999999999999999999988766 5789999999999999999 899999999999999 666 456778999
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-CCCCcEEEEEEcC--CCCEEEEEeeccCCCCeEEEEe
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~--~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
...|.+++|+|. ++.+|++|+.||+|++||++.......+. .+...+..+.|+| ++.++++++. ++.|++||
T Consensus 140 ~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd 214 (304)
T 2ynn_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWD 214 (304)
T ss_dssp CSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEE
T ss_pred CCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEe
Confidence 999999999874 45799999999999999998877766554 4456889999986 7789999987 99999999
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC--EEEEEE
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTT 648 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~ 648 (1096)
+++++++..+.+|.. .+..++|+|++.+|++|+.||.|++||..+++.+..+..+.. .+.+++|+|++. ++++|+
T Consensus 215 ~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEEE
T ss_pred CCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEec
Confidence 999999999999987 899999999999999999999999999999999999887654 899999999875 577776
Q ss_pred CCCcEEEEEcCC
Q 001343 649 ADNGFKILANAI 660 (1096)
Q Consensus 649 ~dg~i~iwd~~~ 660 (1096)
.| .+.+|++.+
T Consensus 292 ~~-g~~~~~~~~ 302 (304)
T 2ynn_A 292 DN-GFTVLSLGN 302 (304)
T ss_dssp TT-EEEEEECC-
T ss_pred CC-ceEEEEecc
Confidence 65 477777654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=362.74 Aligned_cols=301 Identities=17% Similarity=0.270 Sum_probs=261.5
Q ss_pred cceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 335 ~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
..+.+++. |.+.|++++|+|+|+ +||+|+.||+|+|||+.+++.... +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 44566666 999999999999999 699999999999999999887653 677999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEccCCCc----cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE
Q 001343 414 WSPDGNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1096)
Q Consensus 414 ~spd~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 488 (1096)
|+|+|++|++|+.|+.|++||+.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++|| .+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999975421 1222357899999999999998654 699999999999999 8888888
Q ss_pred Ee-----eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 489 NF-----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 489 ~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+ .+|...|.++++++. ++.+|++|+.||+|++||++. ......+..|...|.+++|+|+++++++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 77 689999999999753 567999999999999999984 4667788899999999999999999999987
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCc------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec--CCCCCCccE
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA--EGGLPNLPR 634 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 634 (1096)
|+.|++||+++++.+..+..+.. ..+.+++|+|+++++++|+.||.|++||...++.+..+.. ..+...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 99999999999999988876533 1378899999999999999999999999999988877632 234458999
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++|+|+|.+|++|+.|+.|++|++...
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999998655
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=359.15 Aligned_cols=246 Identities=20% Similarity=0.322 Sum_probs=231.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|.+.|++++|+|++.+|++|+.||+|++||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 67899999999999999999999999999999999988766 6889999999999999999 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.+++++..+.+|...|.+++|+| ++.+|++|+.||+|++||++++.....+..|...|.++.+++++.++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 88899999999999999999987 5689999999999999999999999999999999999999999999999997
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC--------------------CCEEEEEEcCCeEEEEeCCCCeEE
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--------------------QNHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
++.|++||+.+++....+.+|.. .+.+++|+|+ +.++++|+.|+.|++||+.++..+
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 99999999999999999999887 8999999996 678999999999999999999999
Q ss_pred EEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
..+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++
T Consensus 332 ~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 332 MTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp EEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 99988765 8999999999999999999999999998654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=351.84 Aligned_cols=292 Identities=15% Similarity=0.168 Sum_probs=239.3
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeC------CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
.|...|++|+|||||+ +||+|+. |+.|++|+..++...... .....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~---------------~~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESL---------------CTAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGG---------------CSEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeE---------------ecccCCCCCCEEEEEEc
Confidence 4999999999999999 7999987 678999998877654321 01245689999999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccc-eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~ 493 (1096)
|++++| +++.||+|+|||+.+++..... ....+|.+.|++++|+|+++ +|++|+.|++|++|| .+++++..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 6788999999999988654322 23558999999999999999 899999999999999 889999999999
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCCcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEe
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd 570 (1096)
...|++++|++.++ .++++++.||+|++||+++++....+. .+...+.+++|+|++ .++++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999987543 478999999999999999887765443 455579999999985 56777776 89999999
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CCCEEEEEE
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTT 648 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 648 (1096)
+++++.++.+.+|.. .|.+++|+|++ ++|++|+.|++|+|||+++++.+..+ .| ...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H--~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH--RDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC--SSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC--CCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999987 89999999987 57889999999999999999887765 33 44899999998 899999999
Q ss_pred CCCcEEEEEcCCC
Q 001343 649 ADNGFKILANAIG 661 (1096)
Q Consensus 649 ~dg~i~iwd~~~~ 661 (1096)
.||.|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=341.63 Aligned_cols=248 Identities=14% Similarity=0.272 Sum_probs=226.9
Q ss_pred cccCCCCEEEEEEcCC----CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 402 FKDVPISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
+.+|.+.|.+++|+|+ +.+|++|+.|++|+||++.+++.. ....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5679999999999985 679999999999999999876432 2235789999999999999999 89999999999
Q ss_pred EEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
++|| .+++.+..+..|...+.+++|+| ++++|++++.||.|++|++++......+..+...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999 88999999999999999999977 67899999999999999999999998999999999999999999999999
Q ss_pred eeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
+. ++.|++||+++++.+..+.+|.. .+.+++|+|++++|++++.|+.|++||+.+++....+..|.. .|.+++
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~ 255 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLNVA 255 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS--CEEEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEEEE
Confidence 87 99999999999999999999887 899999999999999999999999999999999988887765 899999
Q ss_pred EeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 637 FSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|+|++.+|++++.|+.|++||+.++
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 9999999999999999999998765
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=345.19 Aligned_cols=300 Identities=17% Similarity=0.247 Sum_probs=247.8
Q ss_pred ceEEeec-CCC-ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 336 TVAVSLH-QGS-TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 336 ~~~~~l~-h~~-~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
.++.++. |.+ .|++++|+|+|+ +||+|+.|++|+|||+.++..... .....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence 3455665 877 999999999999 699999999999999987754321 012468999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC---ceEEE
Q 001343 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFN 489 (1096)
Q Consensus 414 ~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~~~~ 489 (1096)
|+|+|++||+|+.|++|++||+..+.. .....+.+|.+.|.+++|+|+++ +|++|+.|++|++|| ..+ .++..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987642 22336889999999999999999 899999999999999 554 34667
Q ss_pred eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEE
Q 001343 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~ 567 (1096)
+.+|...|.+++|+| ++.+|++++.|++|++||.+.... ...+..|...|.+++|+|+|++|++++. |+.|+
T Consensus 146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVR 219 (345)
T ss_dssp ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEE
T ss_pred ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEE
Confidence 889999999999987 568999999999999999987653 3567888899999999999999999997 99999
Q ss_pred EEeCCC---------------CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe----EE---EEeec
Q 001343 568 EWNESE---------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN----IL---TSTDA 625 (1096)
Q Consensus 568 iwd~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~---~~~~~ 625 (1096)
+|+... .+++..+.+.+...+..++|+|++..+++++.|+.|++|+...+. .. .....
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 299 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH 299 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred EeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence 999632 234556666444589999999999999999999999999987542 11 11112
Q ss_pred CCCCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCC
Q 001343 626 EGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 661 (1096)
..|...|++++|+|++ .+|++++.||.|++|++.++
T Consensus 300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 2344589999999987 59999999999999999876
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=344.51 Aligned_cols=296 Identities=14% Similarity=0.147 Sum_probs=239.2
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCc-cccccccccCCCCEEEEEEcCCCCEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL-PFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
|...|.+++|+|||+ +|++|+ |+++++||.... +|+...... .........|...|.+++|+|++ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 667899999999999 688776 888999984321 111000000 00011133467789999999985 78
Q ss_pred EEEECCCeEEEEEccCCCccccc-eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~-~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+++ +|++|+.|++|++|| .+++++..+.+|...|++
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998776533 23568999999999999999 899999999999999 899999999999999999
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCCcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEeCCCCee
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTI 576 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1096)
++|++.+. .+|++++.||+|++||+++++....+. .+...+.+++|+|++ +++++++. ++.|++||+++++.
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99987532 588999999999999999988877654 445579999999954 56777776 99999999999999
Q ss_pred eEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC-EEEEEECCCcEE
Q 001343 577 KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFK 654 (1096)
Q Consensus 577 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~ 654 (1096)
+..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++.+. +..| ...|++++|+|++. +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999988 89999999998 578999999999999999987654 4444 44899999999875 678999999999
Q ss_pred EEEcCCC
Q 001343 655 ILANAIG 661 (1096)
Q Consensus 655 iwd~~~~ 661 (1096)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9999764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=341.05 Aligned_cols=248 Identities=16% Similarity=0.214 Sum_probs=226.7
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|.+.|.+++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 378899999999999999999999999999999999887665 5778999999999999999 89999999999999
Q ss_pred E-cCC----ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 481 E-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 481 d-~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
| .++ .....+.+|.+.|.++.|.+. + .+++++.||+|++||+++++....+..|...|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9 544 355678899999999999763 3 5899999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
++. ++.|++||++++..+..+.+|.. .+.+++|+|++++|++|+.||.|++||+++++.+..+........|.++
T Consensus 202 g~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EeC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 987 99999999999999999999987 8999999999999999999999999999999888877655555579999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+|+|++++|++|+.|+.|++||+.++
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccC
Confidence 99999999999999999999998654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=334.96 Aligned_cols=291 Identities=18% Similarity=0.301 Sum_probs=258.0
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
.+..++. |...|++++|+|+|+ +||+|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 3445554 999999999999999 799999999999999998876643 6789999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~ 493 (1096)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++|| .+++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987766 5789999999999999999 899999999999999 889999999999
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
..+|.+++|++ ++.++++++.||.|++||+++.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 99999999976 66899999999999999999888776654 44558999999999999999987 9999999999
Q ss_pred CCeeeEEEcCcCccc--eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE--
Q 001343 573 EGTIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-- 648 (1096)
Q Consensus 573 ~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 648 (1096)
+++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEcc
Confidence 999999998886532 22223346788999999999999999999999999987765 899999999999999997
Q ss_pred CCCcEEEEEcC
Q 001343 649 ADNGFKILANA 659 (1096)
Q Consensus 649 ~dg~i~iwd~~ 659 (1096)
.|+.|++|+..
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999863
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=353.57 Aligned_cols=357 Identities=13% Similarity=0.197 Sum_probs=283.6
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEec----CCCCe------eecccceeecccccCcccc-ccccccCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL----AMRDR------LVSKPFKIWDMAACSLPFQ-ASIFKDVP 406 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~h~ 406 (1096)
.....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++. ... +. .++. .....+|.
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~ 108 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAE--LR--------HPFALSASSGKTT 108 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEE--EE--------CCCCCC------C
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccc--cc--------ccccccccccCCC
Confidence 3344578999999999999856999999999999999 88773 211 00 0000 00123478
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 485 (1096)
+.|.+++|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGT 182 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCc
Confidence 8999999999999999999999999999 4445444 5778999999999999999 899999999999999 8899
Q ss_pred eEEEeeCCCCC---------------eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC
Q 001343 486 KLFNFEGHEAP---------------VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1096)
Q Consensus 486 ~~~~~~~~~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 550 (1096)
.+..+..+... +.+++|++. ..+++++.||.|++||+++......+..+...|.+++|+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 99999888777 899999873 368999999999999999998888888999999999999999
Q ss_pred CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCC
Q 001343 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
+++++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+..
T Consensus 260 ~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-- 331 (425)
T 1r5m_A 260 KLLLSASD----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV-- 331 (425)
T ss_dssp TEEEEEET----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--
T ss_pred CEEEEEcC----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--
Confidence 99999986 99999999999999999988877 89999999999 999999999999999999999998887655
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCc
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~ 710 (1096)
.|.+++|+|++++|++++.||.|++|++.++......+...
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--------------------------------------- 372 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGN--------------------------------------- 372 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------------------------------------------
T ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecc---------------------------------------
Confidence 89999999999999999999999999997652221111111
Q ss_pred CCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcc--cEEEEEEecCCceEEEeecCCeE
Q 001343 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS--KVVRLLYTNSAVGLLALGSNGVQ 788 (1096)
Q Consensus 711 ~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~dg~v 788 (1096)
.++.+..+. .. ....+.+ |.. .|.+++|+|+++.|++++.||.|
T Consensus 373 -----------------------~~~~~~~~~-------~~-~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 373 -----------------------RDGILNPLP-------IP-LYASYQS---SQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp -----------------------------CEE-------CC-EEEEECC---TTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred -----------------------cccccCccc-------ch-hhhhhcC---cccCCceEEEEccCCCceEEEEecCceE
Confidence 011111111 11 1223444 655 99999999999999999999999
Q ss_pred EEeecc
Q 001343 789 KLWKWH 794 (1096)
Q Consensus 789 ~vw~~~ 794 (1096)
++|+++
T Consensus 419 ~iw~~~ 424 (425)
T 1r5m_A 419 SVVAIP 424 (425)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999974
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=345.75 Aligned_cols=307 Identities=17% Similarity=0.254 Sum_probs=251.2
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 337 ~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
+...+.|.+.|+|++|||+|+ +||+|+ ++.++||++.+++.+.......-.. .............+...|.+++|+|
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred eEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECC
Confidence 455678999999999999999 688875 7899999999988764311000000 0000000001113445699999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
||++||+|+.|+.|++||+.+++.+. .+.+|...|++++|+|+++ .|++|+.|++|++|| .++++...+. +..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 99999999999999999999887655 5789999999999999999 899999999999999 8888877776 566
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-------eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
.+.+++++|. ++.+|++|+.||.|++||++++.....+ ..|...|.+++|+|++++|++++. ++.|++
T Consensus 208 ~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL 282 (393)
T ss_dssp CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred CcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEE
Confidence 7999999763 5689999999999999999988776655 467789999999999999999987 999999
Q ss_pred EeCCCC------------eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 569 WNESEG------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 569 wd~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
||+.+. .+...+.+|.. .+.+++|+|++.+|++|+.|+.|++||..+++.+..+.+|.. .|.+++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~ 359 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVA 359 (393)
T ss_dssp EEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEE
Confidence 998753 34567778877 889999999999999999999999999999999999988765 899999
Q ss_pred EeC------CCCEEEEEECCCcEEEEEcCC
Q 001343 637 FSK------EGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 637 ~s~------~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
|++ ++++|++|+.||.|++|++..
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 986 688999999999999999854
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=330.41 Aligned_cols=248 Identities=18% Similarity=0.311 Sum_probs=225.8
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|.+.|.+++|+|++++|++|+.||+|++||+.++..++ .+.+|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence 488899999999999999999999999999999999987666 5778999999999999999 89999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcC-CCCEEEEEe
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSA-DGSRLFSCG 557 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~-~~~~l~~~~ 557 (1096)
| .+++++..+.+|...|.+++|+| ++.+|++|+.||+|++||+++... ...+..|...|.+++|+| ++..+++++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9 89999999999999999999987 568999999999999999987744 456788999999999999 678999998
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC--CCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
. |+.|++||+.++.....+..+....+..+.|.| ++.++++++.|+.|++||+.+++.+..+..|.. .|.++
T Consensus 161 ~----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~ 234 (304)
T 2ynn_A 161 L----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFA 234 (304)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEE
T ss_pred C----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEE
Confidence 7 999999999988877777665555788888886 678999999999999999999999999988765 89999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+|+|++.+|++++.||.|++||+.++
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999999998766
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=337.90 Aligned_cols=299 Identities=17% Similarity=0.267 Sum_probs=243.9
Q ss_pred eEEeec-CCCceEEEEE-----cC-CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCE
Q 001343 337 VAVSLH-QGSTVISMDF-----HP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 337 ~~~~l~-h~~~V~~v~f-----sp-~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
+..++. |.+.|++++| +| +++ +||+|+.|++|+|||+.+++..... ......+.+|...|
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~V 79 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHFV 79 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSCE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCce
Confidence 344554 9999999999 77 888 7999999999999999765432100 00112478999999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEE
Q 001343 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN 489 (1096)
Q Consensus 410 ~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~ 489 (1096)
.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||..+.....
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~~~~ 154 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGECKFS 154 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCEEEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCceee
Confidence 999999999999999999999999999987765 5789999999999999999 89999999999999955665555
Q ss_pred ee---CCCCCeEEEEeeecCC--------CcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 490 FE---GHEAPVYSICPHHKEN--------IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 490 ~~---~~~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
.. +|...|.+++|+|... +.++++++.||+|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC
Confidence 44 7899999999987532 268999999999999994 45566678889999999999999999999997
Q ss_pred ccCCCCeEEEEeCC-CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE--EeecC---------
Q 001343 559 SKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STDAE--------- 626 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~--------- 626 (1096)
++.|++||+. .......+.. .. .+.+++|+|++.++++ +.|+.|++|++.+++... .+...
T Consensus 234 ----dg~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 234 ----DKKLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp ----TCEEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred ----CCeEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 9999999994 4444455432 22 6899999999887765 467889999998766543 33311
Q ss_pred CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 34457999999999999999999999999998665
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=333.80 Aligned_cols=294 Identities=16% Similarity=0.225 Sum_probs=232.3
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccc-c-cCCCCEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF-K-DVPISVSRV 412 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~l 412 (1096)
+++.++. |.+.|++++|+|+ +||+|+.|++|+|||+.++..... ..+ . +|...|.++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~v 64 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRSV 64 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEEE
Confidence 3455555 9999999999997 699999999999999987542110 012 3 399999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCC----ccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc-CC---
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SG--- 484 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~-~~--- 484 (1096)
+|+|++++||+|+.|++|++||+.... .......+.+|.+.|++++|+|+++ +|++|+.|++|++||. ..
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence 999999999999999999999986432 1222336789999999999999999 8999999999999993 32
Q ss_pred -ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC--CeeeEEeCCCCcEEEEEEcCC--CCEEEEEeec
Q 001343 485 -RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSAD--GSRLFSCGTS 559 (1096)
Q Consensus 485 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~~ 559 (1096)
+++..+.+|...|.+++|+| ++.+|++++.||+|++||.... .....+..|...|.+++|+|+ +..+++++.
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred eEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 45778899999999999987 5689999999999999998766 456678889999999999998 678999887
Q ss_pred cCCCCeEEEEeCCCC--------eeeEEEcC-cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE--EEEeecCCC
Q 001343 560 KDGDSFLVEWNESEG--------TIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGG 628 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 628 (1096)
|+.|++||+.++ .....+.+ |.. .+.+++|++++ .|++++.||.|++|+..+++. .... ...+
T Consensus 220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h 293 (330)
T 2hes_X 220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR-QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCH 293 (330)
T ss_dssp ---TSCEEEEEEEEECTTSCEEEEEEEECCSCCSS-CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTT
T ss_pred ---CCeEEEEEecCCCccccceeEEeeeccccccc-ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccc
Confidence 999999998764 44555555 544 89999999654 899999999999999988743 2222 2233
Q ss_pred CC-CccEEEEeC--CCCEEEEEECCCcEEEEEcCC
Q 001343 629 LP-NLPRLRFSK--EGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 629 ~~-~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.. .|.+++|+| ++.+|++++.||.|++|++..
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33 799999999 789999999999999999854
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=334.81 Aligned_cols=248 Identities=15% Similarity=0.170 Sum_probs=225.0
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|.+.|.+++|+|++++||+|+.||+|++||..+++... .+..|...|.+++|+|++. .|++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 78899999999999999999999999999999998877655 5677999999999999999 899999999999999
Q ss_pred -cCC------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC--CCCE
Q 001343 482 -LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGSR 552 (1096)
Q Consensus 482 -~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~--~~~~ 552 (1096)
... .....+.+|...|.+++|++ ++..|++++.||+|++||+++++....+..|...|.+++++| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 332 34567788999999999977 567999999999999999999999999999999999999987 5789
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCc
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1096)
+++++. |+.|++||+++++.+..+.+|.. .+.+++|+|++..|++++.|++|++||++.++.+..+..+.....+
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 999987 99999999999999999999987 8999999999999999999999999999999888777765554578
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+++|+|++.+|++++.|+.|++||+.++
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 89999999999999999999999998655
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=350.28 Aligned_cols=348 Identities=11% Similarity=0.153 Sum_probs=277.7
Q ss_pred ccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEc----cCCCc------cccce-eec------ccccCEEEEEEecCCC
Q 001343 403 KDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSY----AGSND------LRQHS-QID------AHVGAVNDLAFAYPNK 464 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~-~l~s~~~dg~i~vwd~----~~~~~------~~~~~-~l~------~h~~~v~~l~~s~d~~ 464 (1096)
..|.+.|.+++|+|+++ +||+|+.||.|++||+ .+++. ...+. .+. +|.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34678999999999999 9999999999999999 88772 22110 111 2688999999999999
Q ss_pred cEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCc----
Q 001343 465 LLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW---- 540 (1096)
Q Consensus 465 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---- 540 (1096)
+|++++.||.|++||.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.+++....+..+...
T Consensus 122 --~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 122 --SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp --EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred --EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 89999999999999988899999999999999999977 6689999999999999999998888887777666
Q ss_pred -----------EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeE
Q 001343 541 -----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1096)
Q Consensus 541 -----------i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 609 (1096)
+.+++|++++. +++++. ++.|++||+.+++.+..+..|.. .+.+++|+|++++|++++.||.|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSCE
T ss_pred eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCEE
Confidence 89999999865 666665 89999999999999999998877 89999999999999999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCC
Q 001343 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1096)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 689 (1096)
++||+.+++.+..+..+.. .|.+++|+|++ ++++++.|+.|++||+.++ +...
T Consensus 272 ~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~----------------------- 324 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFYGHSQ--SIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLA----------------------- 324 (425)
T ss_dssp EEECSSSBSCSEEECCCSS--CEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEE-----------------------
T ss_pred EEEECCCCccceEecCCCc--cEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeE-----------------------
Confidence 9999999988888876654 89999999999 9999999999999998655 1100
Q ss_pred CeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEE
Q 001343 690 SSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR 769 (1096)
Q Consensus 690 ~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 769 (1096)
.+.+ |...|.+
T Consensus 325 ------------------------------------------------------------------~~~~---~~~~i~~ 335 (425)
T 1r5m_A 325 ------------------------------------------------------------------LSIV---DGVPIFA 335 (425)
T ss_dssp ------------------------------------------------------------------EEEC---TTCCEEE
T ss_pred ------------------------------------------------------------------eccc---CCccEEE
Confidence 1111 6678889
Q ss_pred EEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEe
Q 001343 770 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (1096)
Q Consensus 770 l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~ 849 (1096)
++|+|++..+++++.||.|++|++.. +......+ . ..
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~----------------------~~~~~~~~------------~---------~~ 372 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKK----------------------LNSKSRSL------------Y---------GN 372 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHH----------------------HHC-----------------------------
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCC----------------------Cccceeee------------e---------cc
Confidence 99999999888888899999998632 11000001 0 00
Q ss_pred cCCeEEEEEcccceEEEeecCCCC--CeeEEEEecCCCcEEEEeeCCCeEEEEeec
Q 001343 850 TGGKISLFNMMTFKVMTTFMSPPP--ASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1096)
Q Consensus 850 ~dg~v~iwd~~~~~~~~~~~~h~~--~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~ 903 (1096)
.++ ++.......+..+..|.. .|++++|+| ++++|++++.||.|++|++.
T Consensus 373 ~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 373 RDG---ILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred ccc---ccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEeec
Confidence 112 223334457788888976 999999999 89999999999999999985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=342.79 Aligned_cols=247 Identities=15% Similarity=0.177 Sum_probs=201.1
Q ss_pred CcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCC
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~d 842 (1096)
|...|.+++|+|++. +++++.||+|++|++....... .......+ |...|.+++|+|+
T Consensus 93 ~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~-------------------~~~~~~~~--h~~~V~~v~~spd 150 (357)
T 4g56_B 93 TEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLL-------------------VNKFAKYE--HDDIVKTLSVFSD 150 (357)
T ss_dssp CSSCEEEEEEETTTE-EEEEETTSCEEEC--------C-------------------CCCEEECC--CSSCEEEEEECSS
T ss_pred CCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeE-------------------EEeeccCC--CCCCEEEEEECCC
Confidence 778899999999986 7778889999999975422100 01111223 8999999999999
Q ss_pred CcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccce
Q 001343 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSV 921 (1096)
Q Consensus 843 g~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~ 921 (1096)
|++|++++ |+.|++||+.+++++..+.+|...|++++|++++..++++++.||+|++||+.+++
T Consensus 151 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~--------------- 215 (357)
T 4g56_B 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK--------------- 215 (357)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS---------------
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc---------------
Confidence 99999998 79999999999999999999999999999999333589999999999999998876
Q ss_pred eeecC--CCCCCCCCceEEEecCC-cEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCC-cEEEEEecC
Q 001343 922 TIHIP--AGKTPTGDTRVQFNADQ-VRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCD 996 (1096)
Q Consensus 922 ~~~~~--~~~~~~~v~~v~fs~dg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-~~la~~~~d 996 (1096)
++... ..+.. .+.+++|+|++ .+|++ +.|+.|++||+.+++++..+..+ ...|.+++|+|++ ++||+|+.|
T Consensus 216 ~~~~~~~~~~~~-~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 216 PATRIDFCASDT-IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH---SQNITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp CBCBCCCTTCCS-CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC---SSCEEEEEECSSSSCCEEEEETT
T ss_pred eeeeeeeccccc-cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc---ceeEEEEEEcCCCCCEEEEEeCC
Confidence 22222 23333 78999999985 57777 68999999999999988888765 8899999999987 579999999
Q ss_pred CcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCC
Q 001343 997 GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 997 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
++|+|||++++++...+. |...|+ +|+|+|.|+.+|++|+.||+|++|++.+..
T Consensus 292 ~~i~iwd~~~~~~~~~~~-----------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 292 CTVAVLDADFSEVFRDLS-----------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SCEEEECTTSCEEEEECC-----------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CEEEEEECCCCcEeEECC-----------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999999999998766544 888999 699998678999999999999999997643
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=332.74 Aligned_cols=302 Identities=22% Similarity=0.303 Sum_probs=258.4
Q ss_pred CcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 334 PRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 334 ~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
...+..+|. |.+.|++|+|+|++..+||||+.|++|+|||+.+++.... .+...+.+|...|.++
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~ 92 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDV 92 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEE
Confidence 344556676 9999999999998544899999999999999987664321 1123478899999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc-eEEEe
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNF 490 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~-~~~~~ 490 (1096)
+|+|++++|++|+.|+.|++|+...+.... ....+...+..+.+++++. .|++|+.|+.+++|| .... ....+
T Consensus 93 ~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECS
T ss_pred EECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEe
Confidence 999999999999999999999998876554 4567888999999999999 899999999999999 4333 34456
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
.+|...+..++|++.....++++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++||
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd 243 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWD 243 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEE
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEE
Confidence 78999999999988777788999999999999999999999999999999999999999999999987 99999999
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec-------CCCCCCccEEEEeCCCCE
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-------EGGLPNLPRLRFSKEGNL 643 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~ 643 (1096)
+.+++.+..+..+. .+..++|+|++. +++++.|+.|++||++++..+..+.. ..+...|++++|+|++++
T Consensus 244 ~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 244 LNEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred eccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 99999999888764 688899999865 55666799999999999887776643 234558999999999999
Q ss_pred EEEEECCCcEEEEEcCCC
Q 001343 644 LAVTTADNGFKILANAIG 661 (1096)
Q Consensus 644 l~~~~~dg~i~iwd~~~~ 661 (1096)
|++|+.||.|++||+.+|
T Consensus 321 l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEEEETTSCEEEEEEEC-
T ss_pred EEEEeCCCEEEEEeCCCc
Confidence 999999999999999887
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=355.29 Aligned_cols=366 Identities=14% Similarity=0.197 Sum_probs=276.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEE----------eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVG----------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg----------~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1096)
.+...|.+++|+|+|+.+||+| +.|+.|+|||+.+++.... .....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEE
Confidence 3456799999999998689999 8899999999988763210 012358899999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEccCCCc-cccceeecccccCEEEEEEecC-CCcEEEEEEeCCCcEEEEE-cCCc---
Q 001343 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR--- 485 (1096)
Q Consensus 412 l~~spd~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~~~~--- 485 (1096)
++|+|++++|++|+.||.|++||+.+... ......+.+|.+.|++++|+|+ +. +|++++.|+.|++|| .+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1122357889999999999998 66 899999999999999 6665
Q ss_pred ---eE---EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC------CCcEEEEEEcCCC-CE
Q 001343 486 ---KL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADG-SR 552 (1096)
Q Consensus 486 ---~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~-~~ 552 (1096)
.. ..+.+|...|.+++|++.+ +.++++++.||.|++||+++.+....+..+ ...|.+++|+|++ .+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence 32 2346799999999998742 579999999999999999998888888776 6789999999997 57
Q ss_pred EEEEeeccCCCC---eEEEEeCCCC-eeeEEEc-CcCccceEEEEEeC-CCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 553 LFSCGTSKDGDS---FLVEWNESEG-TIKRTYA-GFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 553 l~~~~~~~~~~~---~i~iwd~~~~-~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
+++++. ++ .|++||++++ ..+..+. +|.. .+.+++|+| ++.+|++++.||.|++||+.+++.+..+..+
T Consensus 230 l~~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 230 VATATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp EEEEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred EEEEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 777775 66 9999999986 6777777 7776 899999999 8999999999999999999999999999877
Q ss_pred CCCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEec
Q 001343 627 GGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1096)
Q Consensus 627 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~ 705 (1096)
.. .|.+++|+|++ .+|++++.|+.|++|++.+...... ..... .........+.+.+..++.........+
T Consensus 305 ~~--~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 376 (416)
T 2pm9_A 305 GN--WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD-EQETE---TKQQESETDFWNNVSREESKEKPSVFHL-- 376 (416)
T ss_dssp SS--CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC-C-------------------------CCSCCCSSCC--
T ss_pred CC--ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc-ccccc---ccccCCcccccccccccccccccccccc--
Confidence 65 89999999998 8999999999999999987632211 11100 0001111222222222221111111110
Q ss_pred cCCCcCCCccc--CCCCccCCCCCCccccCCCCCccceeee
Q 001343 706 SSPVRPSPIIN--GVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 706 ~~~~~~~~~~~--~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
....... .....+++||+++++++.|+.|++|++.
T Consensus 377 ----~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 377 ----QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp ----CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred ----cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 0000011 1245689999999999999999999986
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=344.14 Aligned_cols=249 Identities=18% Similarity=0.210 Sum_probs=220.7
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 88999999999999999999999999999999999887665 5788999999999999999 899999999999999
Q ss_pred -cCC-------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-----eCCCCcEEEEEEcC
Q 001343 482 -LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-----DAPGHWCTTMLYSA 548 (1096)
Q Consensus 482 -~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~ 548 (1096)
... .....+.+|.+.|.++.|.|.. +..|++|+.|++|++||+++++....+ ..|...|.++++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 432 2345678999999999998753 357999999999999999998887766 56777999999987
Q ss_pred -CCCEEEEEeeccCCCCeEEEEeCC-CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 549 -DGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 549 -~~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
+++++++++. |+.|++||++ .++.+..+.+|.. .|.+++|+|++.+|++|+.||+|++||+.+++.+..+..+
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 8889999987 9999999998 5678889999987 8999999999999999999999999999999998887654
Q ss_pred CC-----CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 627 GG-----LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 627 ~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.. ...|.+++|+|+|++|++|+.||.|++||..++
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence 32 224899999999999999999999999998665
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=323.15 Aligned_cols=247 Identities=19% Similarity=0.310 Sum_probs=220.3
Q ss_pred ccccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEEccCCCcc--ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 401 IFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~-~~l~s~~~dg~i~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 488999999999999965 89999999999999998753321 22346889999999999999999 89999999999
Q ss_pred EEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC------C
Q 001343 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD------G 550 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~------~ 550 (1096)
++|| .+++.+..+.+|...|.+++|++ ++.+|++|+.||+|++||++ ......+..|...|.++.++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999 89999999999999999999976 66899999999999999986 4566778889999999999985 4
Q ss_pred CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCC
Q 001343 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
..+++++. ++.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+.
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 238 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD--- 238 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS---
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---
Confidence 47888887 99999999999999999999987 89999999999999999999999999999999998887643
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.|.+++|+|++.++++++.+ .+++|++...
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 79999999999999988865 5999998654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=320.29 Aligned_cols=250 Identities=21% Similarity=0.329 Sum_probs=225.8
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|...|.+++|+|++++|++|+.||.|++|+..+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 478999999999999999999999999999999999887665 5789999999999999999 89999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
| .+++++..+.+|...|.+++|+| ++.+|++|+.||.|++||+++++....+..|...|.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9 88999999999999999999977 5689999999999999999999998899999999999999999999999987
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe-
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS- 638 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s- 638 (1096)
++.|++||+.+++.+..+.......+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred ---CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 9999999999999888887666658899999999999999999999999999999999888877653333334444
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++.+|++++.||.|++||+.++
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTC
T ss_pred CCCcEEEEECCCCEEEEEECCCc
Confidence 57889999999999999998665
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=327.66 Aligned_cols=285 Identities=14% Similarity=0.165 Sum_probs=245.1
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
|.++|.+++|+|||+ +++++..++.+.+|......... ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 567899999999999 68777777777666554433221 1346999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeec--ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc--eEEEeeCCCCCe
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPV 497 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~--~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~--~~~~~~~~~~~v 497 (1096)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++|| .+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999877655444444 7999999999999999 899999999999999 6665 567788999999
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
.+++|++ ++.++++++.||.|++||+++.+....+..|...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999977 6689999999999999999999888888889999999999999999999987 999999999999988
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
..+.. .. .+.+++|+|+++.+++++.++.|++||+.+++... +..+ ...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-CC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCC--ccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 88753 33 68899999999999999999999999999887653 3333 34899999999999999999999999999
Q ss_pred cCCC
Q 001343 658 NAIG 661 (1096)
Q Consensus 658 ~~~~ 661 (1096)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8765
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=325.70 Aligned_cols=251 Identities=14% Similarity=0.217 Sum_probs=214.1
Q ss_pred ccccCCC-CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 401 IFKDVPI-SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 401 ~~~~h~~-~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.+.+|.. .|.+++|+|+|++||+|+.|++|+|||+.++..........+|...|++++|+|+++ +|++|+.|++|++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence 3678887 999999999999999999999999999998754433223468999999999999999 8999999999999
Q ss_pred EE-cCC--ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe---eeEEeCCCCcEEEEEEcCCCCEE
Q 001343 480 WE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 480 wd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
|| ..+ +++..+.+|...|.+++|+| ++++|++|+.||+|++||++.... ...+..|...|.+++|+|++++|
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence 99 554 45788999999999999977 668999999999999999987643 34667888899999999999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCe--eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC--------------
Q 001343 554 FSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-------------- 617 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------- 617 (1096)
++++. ++.|++||..++. ....+.+|.. .|.+++|+|++++|++++.|++|++|+....
T Consensus 166 ~s~s~----d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 166 ASASY----DDTVKLYREEEDDWVCCATLEGHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp EEEET----TSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred EEEeC----CCcEEEEEecCCCEEEEEEecCCCC-ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence 99987 9999999998875 4567888887 8999999999999999999999999996321
Q ss_pred -eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 618 -NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 618 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
..+..+... +...|.+++|+|++..|++++.|+.|++|+...+
T Consensus 241 ~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 241 WKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp EEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred cceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 223333331 3348999999999999999999999999998654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=325.43 Aligned_cols=246 Identities=15% Similarity=0.147 Sum_probs=202.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccC-------CCc-cccceeecccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG-------SND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~-------~~~-~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
.|...|.+++|+|||++|++++ |+++++||... ... .........|...|.+++|+|++ .|++|+.||
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~---~l~~~s~dg 103 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER---GILVASDSG 103 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT---EEEEEETTS
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC---eEEEEECCC
Confidence 4677899999999999999887 66778876321 000 11111233467889999999986 588999999
Q ss_pred cEEEEE-cCCceEEE----eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC
Q 001343 476 LIKVWE-LSGRKLFN----FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 550 (1096)
+|++|| .+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+++++.+..+..|...|.+++|++++
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp--dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLS--SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence 999999 77776543 458999999999977 67899999999999999999999999999999999999999998
Q ss_pred C-EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC-ccceEEEEEeCC-CCEEEEEEcCCeEEEEeCCCCeEEEEeecCC
Q 001343 551 S-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 551 ~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1096)
. .+++++. |+.|++||+++++....+..+. ...+.+++|+|+ +.++++|+.||.|++||+++++.+..+..|.
T Consensus 182 ~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~ 257 (344)
T 4gqb_B 182 DSVFLSCSE----DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS 257 (344)
T ss_dssp TTEEEEEET----TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS
T ss_pred CCceeeecc----ccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC
Confidence 5 6778876 9999999999999888875432 236788999985 5688899999999999999999999998876
Q ss_pred CCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCC
Q 001343 628 GLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 628 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 661 (1096)
. .|++++|+|++ ++|++++.|++|++||+.++
T Consensus 258 ~--~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 258 Q--CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp S--CEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred C--CEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 5 89999999998 68999999999999997554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=364.36 Aligned_cols=515 Identities=14% Similarity=0.113 Sum_probs=368.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
+...+.+.+|||+ .+|.++. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~---~iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD---RIIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT---EEEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC---EEEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4567899999964 4665544 799999998876542 667999999999999999999
Q ss_pred EEECC------CeEEEEEccCCCccccceeecccccCE-------EEEEEecCCCcEEEEEEeCC------CcEEEEEcC
Q 001343 423 VAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAV-------NDLAFAYPNKLLCVVTCGDD------KLIKVWELS 483 (1096)
Q Consensus 423 s~~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v-------~~l~~s~d~~~~~l~s~s~d------~~i~iwd~~ 483 (1096)
+++.+ ..|++||+.+++. + .+..|...+ ..++|+|||+ ++++++.+ ..|++||..
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 3799999988753 2 477888888 9999999998 78887754 357788844
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC------------CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCC
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI------------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 551 (1096)
+.....+..+. ...++|+| | ++++++. +...++|..........+..|...+.++.|+++ .
T Consensus 143 ~g~~~~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 143 GINFVPLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp GTEEEECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E
T ss_pred CCCeEEecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E
Confidence 44444554433 34566765 5 7877753 345677765444555566788889999999988 4
Q ss_pred EEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC---
Q 001343 552 RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG--- 627 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 627 (1096)
.++++.. ++.+.+|.+.. +...+.+..+.. +...+|+|+|+.++++ .++.|++|++...... .+..+.
T Consensus 216 l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~~--~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~ 287 (1045)
T 1k32_A 216 IYFITDI----DGFGQIYSTDLDGKDLRKHTSFTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLES 287 (1045)
T ss_dssp EEEEECT----TSSCEEEEEETTSCSCEECCCCCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCB
T ss_pred EEEEEec----cCceEEEEEeCCCCcceEecCCCC--cceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccc
Confidence 4444433 56667776542 334455555543 4557999999988887 4899999999554433 443321
Q ss_pred ------CCCCccEEEEe-CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCc
Q 001343 628 ------GLPNLPRLRFS-KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1096)
Q Consensus 628 ------~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~ 700 (1096)
+...+..++|+ |+|+.|++++ ++.|.+|++..+. ..
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~----------------------------------- 330 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VL----------------------------------- 330 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EE-----------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eE-----------------------------------
Confidence 11257889999 9998888877 6778888765431 00
Q ss_pred eeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcc-cEEEEEEecCCceE
Q 001343 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS-KVVRLLYTNSAVGL 779 (1096)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l 779 (1096)
.+.+ +.. .+..++|+ ||+.+
T Consensus 331 -------------------------------------------------------~~~~---~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 331 -------------------------------------------------------KVPE---PLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp -------------------------------------------------------ECSC---CSCEEEEEECSS-SEEEE
T ss_pred -------------------------------------------------------EccC---CCcceEEeeeEc-CCCeE
Confidence 0111 444 67788899 88888
Q ss_pred EEeecCCeEE-EeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEE
Q 001343 780 LALGSNGVQK-LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (1096)
Q Consensus 780 ~~~~~dg~v~-vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iw 857 (1096)
+.++.++.+. +|++. ++.... +.+ |...+..++|||||++||+++ ++.|++|
T Consensus 352 ~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYR----------------------TGKAEK--FEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp EEEETTEEEEEEEETT----------------------TCCEEE--CCC--CCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEECCCceEEEEECC----------------------CCCceE--ecC--CccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 8877766666 66653 222222 223 678899999999999999988 6899999
Q ss_pred EcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC----------eEEEEeeccceeeeeeccccccccceeeecCC
Q 001343 858 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----------TIHIYNVRVDELCVWSIDTWEKRKSVTIHIPA 927 (1096)
Q Consensus 858 d~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg----------~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~ 927 (1096)
|+.+++....+.+|.+.+.+++||| |+++|++++.++ .|++||+.+++ +..+.
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----------------~~~l~ 468 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----------------IFAAT 468 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----------------EEECS
T ss_pred ECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc----------------EEEee
Confidence 9999998888878999999999999 899998887654 89999998775 23344
Q ss_pred CCCCCCCceEEEecCCcEEEE-EecceEEEEEccccee------------------------------------------
Q 001343 928 GKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMER------------------------------------------ 964 (1096)
Q Consensus 928 ~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~------------------------------------------ 964 (1096)
.+.. .+..++|+|||++|++ +.++...+|+......
T Consensus 469 ~~~~-~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 547 (1045)
T 1k32_A 469 TENS-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK 547 (1045)
T ss_dssp CSSS-BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGG
T ss_pred CCCc-ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhH
Confidence 4444 6788999999999998 6656555565422111
Q ss_pred -ccccccCCCCCCCceEEEEeeCCcEEEE-------------EecCCcEEEEecCCCceeEEEccccccCCCccCCCccc
Q 001343 965 -IRQWTPQDALSAPISCAVYSCNSQLVFA-------------TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTV 1030 (1096)
Q Consensus 965 -~~~~~~~~~~~~~i~~l~~s~dg~~la~-------------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 1030 (1096)
+..+.. +.+.+..++++|||+++++ ......|.+||+.+++...... .+
T Consensus 548 ~~~~l~~---~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--------------~v 610 (1045)
T 1k32_A 548 RSSPINV---DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN--------------NL 610 (1045)
T ss_dssp GCEECSC---CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEE--------------EE
T ss_pred ceEEcCC---CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeec--------------Cc
Confidence 011111 1567889999999998875 1234578889999887543321 35
Q ss_pred cceEEEecCCCCceEEEEeeCCcEEEEccCCCC
Q 001343 1031 YPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1031 ~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
. .++||| ||++|++++.| .|++||+.+++
T Consensus 611 ~--~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 611 T--DLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E--EEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred c--eEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 5 489999 99999998766 89999998876
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=341.60 Aligned_cols=283 Identities=15% Similarity=0.145 Sum_probs=239.0
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
..+++++|+|+|++ |++|+.||.|++||+.+++.... +..| ..+....|+|++++|++|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence 34568999999995 99999999999999987765421 3444 455566889999999999
Q ss_pred ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEee
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~ 503 (1096)
+.||.|++||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|++|++|| .+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999876654 4678999999999999999 899999999999999 8899999999999999999998
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC---CCcEEE---------------------EEEcCCCCEEEEEeec
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTT---------------------MLYSADGSRLFSCGTS 559 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~---------------------l~~s~~~~~l~~~~~~ 559 (1096)
| ++.+|++++.||+|++||+++++....+..+ ...+.+ ++|+|+++++++++.
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV- 267 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence 7 6689999999999999999998888777643 334444 455789999999987
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCCeE-EEEeecCCCCCCccEEEE
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~ 637 (1096)
++.|++||+++++....+.......+.+++|+|++. +|++++.||.|++||+.+++. +..+..+. ...|.++.+
T Consensus 268 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~ 343 (420)
T 3vl1_A 268 ---SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYF 343 (420)
T ss_dssp ---TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEE
T ss_pred ---CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEe
Confidence 999999999999988888765445899999999998 999999999999999998753 66666532 236777755
Q ss_pred eCCCCEEEEEECCCcEEEEEcCCC
Q 001343 638 SKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 638 s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++.+|++++.|+.|++|++...
T Consensus 344 -~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 -AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -ETTEEEEEETTTEEEEEEEECCT
T ss_pred -CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=329.27 Aligned_cols=295 Identities=13% Similarity=0.182 Sum_probs=246.2
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
.+...+. |...|++++|+|+|..+||+|+.||.|+|||+.+++..... .+.+|...|.+++|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~ 126 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKF 126 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEe
Confidence 3455554 99999999999999338999999999999999988765420 13479999999999
Q ss_pred cC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC
Q 001343 415 SP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (1096)
Q Consensus 415 sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 493 (1096)
+| ++++|++++.|+.|++||+.+ ..+..+....+|...|.+++|+|+++ +|++|+.|+.|++||.+++.+..+.+|
T Consensus 127 ~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~h 203 (383)
T 3ei3_B 127 NQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGLDGHEIFKEKLH 203 (383)
T ss_dssp ETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEETTSCEEEEEECS
T ss_pred CCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEECCCCEEEEeccC
Confidence 99 789999999999999999986 44443333345668999999999999 899999999999999888999999999
Q ss_pred CCCeEEEEeeecCCCc-EEEEEECCCeEEEEEcCC----CCeeeEEeCCCCcEEEEEEcC-CCCEEEEEeeccCCCCeEE
Q 001343 494 EAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDT----MGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~~~i~ 567 (1096)
...|.+++|+| ++. ++++++.||.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++.|+
T Consensus 204 ~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~ 276 (383)
T 3ei3_B 204 KAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIR 276 (383)
T ss_dssp SSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEE
T ss_pred CCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEE
Confidence 99999999987 446 899999999999999997 4444444 6888999999999 9999999987 99999
Q ss_pred EEeCCCCeeeEEEcCcCc----------------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCC
Q 001343 568 EWNESEGTIKRTYAGFRK----------------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 568 iwd~~~~~~~~~~~~~~~----------------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
+||+.+++....+.+|.. ..+..++++|++.+ +++.||.|++||+.+++.+..+..+.+...
T Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~ 354 (383)
T 3ei3_B 277 VYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGI 354 (383)
T ss_dssp EEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSC
T ss_pred EEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCce
Confidence 999999888777765431 12333555666655 667899999999999999999987665557
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
+..++|+|++++|++++ |+.|++||+.+
T Consensus 355 ~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 355 ISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 88889999999999997 89999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=356.06 Aligned_cols=295 Identities=20% Similarity=0.301 Sum_probs=251.6
Q ss_pred Eee-cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 339 VSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 339 ~~l-~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
..+ .|.+.|+|++|+|++..+|+||+.|++|+|||+.++..... .....+.+|...|.+++|+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~ 441 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSD 441 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTT
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCC
Confidence 344 49999999999998766899999999999999986543210 011237889999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEe----eCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGH 493 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~~ 493 (1096)
+++|++|+.||+|+|||+.+++..+ .+.+|.+.|.+++|+|+++ .|++|+.|++|++||..+.+...+ .+|
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h 516 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGH 516 (694)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSC
T ss_pred CCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCC
Confidence 9999999999999999999987665 5789999999999999999 899999999999999555544443 478
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
...|.+++|+|......+++++.||+|++||+++......+..|...|.+++|+|++++|++++. ++.|++||+.+
T Consensus 517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~ 592 (694)
T 3dm0_A 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAE 592 (694)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTT
T ss_pred CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCC
Confidence 89999999988655578999999999999999999988899999999999999999999999997 99999999999
Q ss_pred CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC-----------------CCCccEEE
Q 001343 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-----------------LPNLPRLR 636 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~ 636 (1096)
++.+..+..+. .+.+++|+|++.++++++ ++.|++||+.++..+..+..+.. ...+.+++
T Consensus 593 ~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 669 (694)
T 3dm0_A 593 GKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN 669 (694)
T ss_dssp TEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred CceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence 99888776543 689999999988777665 56799999999988877653311 11367899
Q ss_pred EeCCCCEEEEEECCCcEEEEEcC
Q 001343 637 FSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
|+|+|++|++|+.||.|++|++.
T Consensus 670 ~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 670 WSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcCCCCEEEEEcCCCeEEEEecc
Confidence 99999999999999999999974
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=316.63 Aligned_cols=246 Identities=20% Similarity=0.314 Sum_probs=209.2
Q ss_pred ccccCCCCEEEEEE-----cC-CCCEEEEEECCCeEEEEEccCCCcc----ccceeecccccCEEEEEEecCCCcEEEEE
Q 001343 401 IFKDVPISVSRVAW-----SP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVT 470 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~-----sp-d~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~l~~h~~~v~~l~~s~d~~~~~l~s 470 (1096)
.+.+|.+.|++++| ++ |+++|++|+.|++|++||+.+++.. .....+.+|...|++++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 48899999999999 77 9999999999999999999765321 22336789999999999999999 8999
Q ss_pred EeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe---CCCCcEEEEEE
Q 001343 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLY 546 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~ 546 (1096)
|+.|++|++|| .+++.+..+.+|...|.+++|+| ++.+|++++.||+|++||+.. ....... .|...|.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 99999999999 88999999999999999999987 668999999999999999973 3333332 56678999999
Q ss_pred cCCC----------CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC-
Q 001343 547 SADG----------SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD- 615 (1096)
Q Consensus 547 s~~~----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~- 615 (1096)
+|++ .++++++. ++.|++|| .+++....+.+|.. .+.+++|+|++++|++|+.||.|++||+.
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9987 68899887 99999999 55677788888887 89999999999999999999999999994
Q ss_pred CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.......+.. .+ .|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 245 ~~~~~~~~~~-~~--~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 245 LTYPQREFDA-GS--TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp CSSCSEEEEC-SS--CEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CcccceeecC-CC--cEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 4444444432 22 69999999999888755 5778999998765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=345.94 Aligned_cols=359 Identities=10% Similarity=0.056 Sum_probs=255.2
Q ss_pred CcceEEeecCCCceEEEEEcCCC---------CcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 334 PRTVAVSLHQGSTVISMDFHPSH---------QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 334 ~~~~~~~l~h~~~V~~v~fsp~g---------~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
..+...++.+.+.|++|+|+|++ + +||+|+.++.. .
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~------------~---------------------- 167 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD------------E---------------------- 167 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC------------C----------------------
Confidence 44556667788999999999997 5 79988755320 0
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccc-ceeecccccCEEEEEEecC------CCcEEEEEEeCCCcE
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYP------NKLLCVVTCGDDKLI 477 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~l~~h~~~v~~l~~s~d------~~~~~l~s~s~d~~i 477 (1096)
..+|+++.|++++.|++|+|||+.+++.... ...+.+|.+.|++++|+|+ +. +|++++.||+|
T Consensus 168 --------~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 168 --------PLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred --------ccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 1268999999999999999999988764321 1235678899999999997 45 89999999999
Q ss_pred EEEE-cCCce-----------EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEE
Q 001343 478 KVWE-LSGRK-----------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTM 544 (1096)
Q Consensus 478 ~iwd-~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l 544 (1096)
++|| ..+.. ...+.+|...|++++|++ + ..|++|+.||+|++||++++.. ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999 54432 346789999999999975 3 4899999999999999987643 45678899999999
Q ss_pred --EEcCCC-CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 001343 545 --LYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 545 --~~s~~~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
+|++++ .+|++++. |+.|++||+++++....+.+|.. ..+.+++|+|++..+++++.|++|++||++++..+
T Consensus 315 ~~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~ 390 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV 390 (524)
T ss_dssp EEECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC
T ss_pred EEEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc
Confidence 578888 88999987 99999999999888877777653 24678999999999999999999999999999887
Q ss_pred EEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCc
Q 001343 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~ 700 (1096)
..+..|.. .|++++|+|++++|++|+.||+|++||+... .+..............+..++|+|+|..+.
T Consensus 391 ~~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~------- 459 (524)
T 2j04_B 391 HPLVSRET--TITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYR------- 459 (524)
T ss_dssp EEEEECSS--CEEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEE-------
T ss_pred eeeecCCC--ceEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEE-------
Confidence 77877655 8999999999999999999999999998543 222211110011112355677777776431
Q ss_pred eeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCc---
Q 001343 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV--- 777 (1096)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~--- 777 (1096)
.. +..++|.... .+. ....+.+ |...|.+++|+|++.
T Consensus 460 -------------------------------~~--~~~~~~~~~~---~g~-~~~~l~g---h~~~V~~Vafsp~~~~~~ 499 (524)
T 2j04_B 460 -------------------------------ID--SSYEVYPLTV---NDV-SKAKIDA---HGINITCTKWNETSAGGK 499 (524)
T ss_dssp -------------------------------EC--CCCCCCC--------------------CCCSCCCEEECCSTTTTT
T ss_pred -------------------------------cc--CCceeccccc---CCc-ceeeecC---CCceEEEEECCCCCCccH
Confidence 11 1223333210 122 2235566 999999999999964
Q ss_pred eEEEeecCCeEEEeeccC
Q 001343 778 GLLALGSNGVQKLWKWHR 795 (1096)
Q Consensus 778 ~l~~~~~dg~v~vw~~~~ 795 (1096)
.+++++.+|.|+||++..
T Consensus 500 ~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 500 CYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEEECTTSEEEEEECSC
T ss_pred HHHhhccCceEEEEEccc
Confidence 778888889999999754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=328.36 Aligned_cols=295 Identities=13% Similarity=0.170 Sum_probs=253.2
Q ss_pred EEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
...+. |.+.|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|+|
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~ 72 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVLQ 72 (397)
T ss_dssp EEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEec
Confidence 44454 999999999999 4 79999999999999999887211100 0112678999999999999
Q ss_pred C----C---CEEEEEECCCeEEEEEccCCCc-----cccceeeccc-----ccCEEEEEEe----cCCCcEE-EEEEeCC
Q 001343 417 D----G---NYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAH-----VGAVNDLAFA----YPNKLLC-VVTCGDD 474 (1096)
Q Consensus 417 d----~---~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~l~~h-----~~~v~~l~~s----~d~~~~~-l~s~s~d 474 (1096)
+ + ++|++++.||.|++||+.+++. +. .+.+| ...|.+++|+ |+++ . |++++.|
T Consensus 73 ~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~d 147 (397)
T 1sq9_A 73 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVK 147 (397)
T ss_dssp EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETT
T ss_pred ccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCC
Confidence 9 9 9999999999999999998875 44 56677 6999999999 9999 8 9999999
Q ss_pred CcEEEEE-cC------CceEE-----Ee-------eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe
Q 001343 475 KLIKVWE-LS------GRKLF-----NF-------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1096)
Q Consensus 475 ~~i~iwd-~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 535 (1096)
+.|++|| .. ++.+. .+ ..|...|.+++|++ ++ ++++++.||.|++||+++.+....+.
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~ 224 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFE 224 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence 9999999 66 66666 77 44899999999977 66 99999999999999999988888888
Q ss_pred C---C---CCcEEEEEEcCCCCEEEEEeeccCCC---CeEEEEeCCCCeeeEEEcC-------------cCccceEEEEE
Q 001343 536 A---P---GHWCTTMLYSADGSRLFSCGTSKDGD---SFLVEWNESEGTIKRTYAG-------------FRKKSNGVVQF 593 (1096)
Q Consensus 536 ~---~---~~~i~~l~~s~~~~~l~~~~~~~~~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~i~~~~~ 593 (1096)
. | ...|.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |.. .+.+++|
T Consensus 225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 299 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSF 299 (397)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEE
T ss_pred ccccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEE
Confidence 8 8 889999999999999999987 7 8999999999999999988 766 8999999
Q ss_pred eCCCCEEEEEEcCCeEEEEeCCCCeEEEEee------cC-------------CCCCCccEEEEeCCC----------CEE
Q 001343 594 DTTQNHFLAVGEDSQIKFWDMDNVNILTSTD------AE-------------GGLPNLPRLRFSKEG----------NLL 644 (1096)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~~~~s~~~----------~~l 644 (1096)
+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|
T Consensus 300 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l 379 (397)
T 1sq9_A 300 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESL 379 (397)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceE
Confidence 9999999999999999999999999999988 54 013489999999998 799
Q ss_pred EEEECCCcEEEEEcCCC
Q 001343 645 AVTTADNGFKILANAIG 661 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~~~ 661 (1096)
++++.||.|++|++.++
T Consensus 380 ~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 380 CCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEETTTEEEEEEEEC-
T ss_pred EEecCCCcEEEEEcCCC
Confidence 99999999999999775
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=312.13 Aligned_cols=293 Identities=13% Similarity=0.186 Sum_probs=252.4
Q ss_pred cceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 335 ~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
......++|...|++++|+|+++ ++++|+ ||.|+|||+.+++.... + ......+|...|.+++|
T Consensus 42 ~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~ 105 (337)
T 1gxr_A 42 ARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--V------------SQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp EEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--S------------EEEECSCTTSBEEEEEE
T ss_pred cccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCceee--e------------ecccccCCCCcEEEEEE
Confidence 44556678999999999999999 688888 99999999988764421 0 10012368999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~ 493 (1096)
+|++++|++++.||.|++||+.+++.. ....+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++.+..+.+|
T Consensus 106 ~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 182 (337)
T 1gxr_A 106 LPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred cCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCCC--EEEEEeCCCcEEEEeCCCCceeeeeecc
Confidence 999999999999999999999987632 2225778999999999999999 899999999999999 888999999999
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
...|.+++|+| ++.+|++++.||.|++||+++.+....+. +...+.+++|+|+++++++++. ++.|++||+.+
T Consensus 183 ~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~ 255 (337)
T 1gxr_A 183 TDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNK 255 (337)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS
T ss_pred cCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcC----CCcEEEEECCC
Confidence 99999999977 66899999999999999999887776654 5668999999999999999986 89999999998
Q ss_pred CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
++.. .+..|.. .+..++|+|+++++++++.||.|++|++.+++.+..... ...|.+++|+|++++|++++.||.|
T Consensus 256 ~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 256 PDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp SCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecC---CCcEEEEEECCCCCEEEEecCCCeE
Confidence 8764 5666666 899999999999999999999999999999988865543 2379999999999999999999999
Q ss_pred EEEEc
Q 001343 654 KILAN 658 (1096)
Q Consensus 654 ~iwd~ 658 (1096)
++|++
T Consensus 331 ~iw~~ 335 (337)
T 1gxr_A 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=317.14 Aligned_cols=286 Identities=13% Similarity=0.124 Sum_probs=256.0
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 340 ~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
..+|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|+|+++
T Consensus 28 l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCFTK 87 (369)
T ss_dssp EECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSS
T ss_pred EEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCCCC
Confidence 345999999999999999 799999999999999999887653 778999999999999999
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-----CcEEEEE-cCCc--------
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGR-------- 485 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~i~iwd-~~~~-------- 485 (1096)
+|++++.||.|++||+.+++.+.. +. |...|.+++|+|+++ ++++++.+ +.|++|| ..+.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVAT---WK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEE---EE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEE---ee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 999999999999999999887663 43 889999999999999 89999998 9999999 4442
Q ss_pred ---eEEEeeCCCC--CeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 486 ---KLFNFEGHEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 486 ---~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+++ ......+..+...|.+++|+|++++|++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 238 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR- 238 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred ccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC-
Confidence 4455666766 899999987 568999999999999999998 6667788889999999999999999999986
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC--------------eEEEEeCCCCeEEEEeec
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--------------QIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~ 625 (1096)
++.|++||+.+++.+..+.. .. .+..++|+|++.++++++.++ .+++||..+++.+..+..
T Consensus 239 ---d~~i~v~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 239 ---DTNSFLVDVSTLQVLKKYET-DC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp ---TSEEEEEETTTCCEEEEEEC-SS-CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred ---CceEEEEECCCCceeeeecC-CC-CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence 99999999999999988883 33 788999999999999999888 899999999999999987
Q ss_pred CCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 314 ~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 314 HFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 765 8999999999999999999999999999765
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=309.75 Aligned_cols=287 Identities=17% Similarity=0.261 Sum_probs=252.8
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
++.+++. |.+.|++++| |+++ +|++|+.||.|+|||+.+++.... +..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEEE
Confidence 5566665 9999999999 9998 699999999999999988776542 6678999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCC
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 494 (1096)
+|++++|++|+.||.|++|++...........+.+|...|.+++| +++ .+++++.|+.|++|| .++.+..+..|.
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d-~~~~~~~~~~~~ 142 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK-EGSLVYNLQAHN 142 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE-TTEEEEEEECCS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc-CCcEEEecccCC
Confidence 999999999999999999999876554545578899999999999 456 899999999999999 778888999999
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC-CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
.++.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+++
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCc
Confidence 99999999874 457999999999999999 4455556665 778999999999998 777776 99999999999
Q ss_pred CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.||.|
T Consensus 215 ~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 215 GDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCcE
Confidence 999999999887 89999999998 689999999999999999999999987765 899999999998 6679999999
Q ss_pred EEEEcCCC
Q 001343 654 KILANAIG 661 (1096)
Q Consensus 654 ~iwd~~~~ 661 (1096)
++|++.++
T Consensus 290 ~iw~~~~~ 297 (313)
T 3odt_A 290 RIFSQEKS 297 (313)
T ss_dssp EEEESCGG
T ss_pred EEEeCCCC
Confidence 99999876
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=322.86 Aligned_cols=289 Identities=18% Similarity=0.282 Sum_probs=243.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccc------------------cCEEEEEEecCCCc
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV------------------GAVNDLAFAYPNKL 465 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~------------------~~v~~l~~s~d~~~ 465 (1096)
+|.+.|.+++|||||++||+|+ ++.+++|++.+++.+.. +..|. ..|++++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR---LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE---ECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE---ecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 68999999999876653 33332 3499999999999
Q ss_pred EEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEE
Q 001343 466 LCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (1096)
Q Consensus 466 ~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 544 (1096)
+|++|+.|++|++|| .+++.+..+.+|...|.+++|+| ++.+|++++.||+|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999 88889999999999999999977 66899999999999999999888776665 34579999
Q ss_pred EEcC-CCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE-------cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 545 LYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY-------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 545 ~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
+|+| +++++++++. ++.|++||+.+++.+..+ .+|.. .+.+++|+|++.+|++++.|+.|++||+.+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999 8999999987 999999999999888777 45655 899999999999999999999999999976
Q ss_pred Ce------------EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEE
Q 001343 617 VN------------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1096)
Q Consensus 617 ~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1096)
.. ....+..|.. .|.+++|+|++.+|++++.|+.|++||..++ ..+..+.+|. ..|.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~-----~~v~~v~ 359 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHR-----NSVISVA 359 (393)
T ss_dssp -------------CEEEEEECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCS-----SCEEEEE
T ss_pred CCCcccccCCCCCcceEEEecccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECCCC-----CCEEEEE
Confidence 32 3444555544 8999999999999999999999999999888 5556666664 3477788
Q ss_pred eecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeee
Q 001343 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1096)
Q Consensus 685 ~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 745 (1096)
|+++.. +.|++.++++++.|++|++|++..
T Consensus 360 ~~~~~~-------------------------------~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 360 VANGSS-------------------------------LGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECSSCT-------------------------------TCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ecCCcC-------------------------------cCCCCCEEEEECCCCcEEECcccc
Confidence 765432 357788899999999999999873
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=331.33 Aligned_cols=333 Identities=10% Similarity=0.020 Sum_probs=266.5
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
.+++++|+|++++|++|+.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++|| .+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence 45579999999999999999999999999876655 34455 4455667899999 899999999999999 88888
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
...+.+|...|++++|+| ++.+|++++.||.|++||+++.+....+..|...|.+++|+|++++|++++. ++.|
T Consensus 132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v 205 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI 205 (420)
T ss_dssp EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence 888889999999999987 5689999999999999999999999999999999999999999999999987 9999
Q ss_pred EEEeCCCCeeeEEEcCcCc--cceEE---------------------EEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 567 VEWNESEGTIKRTYAGFRK--KSNGV---------------------VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~--~~i~~---------------------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
++||+++++.+..+..+.. ..+.+ ++|+|+++++++++.||.|++||+.+++.+..+
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 285 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL 285 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc
Confidence 9999999999999876421 13444 445788999999999999999999998887776
Q ss_pred ecCCCCCCccEEEEeCCCC-EEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCcee
Q 001343 624 DAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1096)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~ 702 (1096)
... +...|.+++|+|++. +|++++.||.|++||+.++...+..+..
T Consensus 286 ~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------------------------------- 332 (420)
T 3vl1_A 286 PSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-------------------------------- 332 (420)
T ss_dssp CCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE--------------------------------
T ss_pred ccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc--------------------------------
Confidence 542 234899999999998 9999999999999999765211111100
Q ss_pred EeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEe
Q 001343 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1096)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 782 (1096)
. |...|.++.+ +++..++++
T Consensus 333 --------------------------------------------------------~---~~~~v~~~~~-~~~~~l~s~ 352 (420)
T 3vl1_A 333 --------------------------------------------------------N---EGTPINNVYF-AAGALFVSS 352 (420)
T ss_dssp --------------------------------------------------------S---TTSCEEEEEE-ETTEEEEEE
T ss_pred --------------------------------------------------------c---CCCCceEEEe-CCCCEEEEe
Confidence 0 4556777754 567788888
Q ss_pred ecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCc----EEEEecCCeEEEEE
Q 001343 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS----YVMSATGGKISLFN 858 (1096)
Q Consensus 783 ~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~----~la~~~dg~v~iwd 858 (1096)
+.|+.+++|++....... . +....... .+.+ |...|.+++|+|+++ ++++|++|.+.+|+
T Consensus 353 ~~d~~v~iw~~~~~~~~~---~-------~~~~~~~~----~~~~--~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 353 GFDTSIKLDIISDPESER---P-------AIEFETPT----FLVS--NDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp TTTEEEEEEEECCTTCCS---C-------EECTTSCE----EECC--SSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred cCCccEEEEeccCCCCCc---c-------ceeccCcc----EEcc--CCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 899999999986532100 0 00001111 1223 788999999999998 77777799999999
Q ss_pred ccc
Q 001343 859 MMT 861 (1096)
Q Consensus 859 ~~~ 861 (1096)
+.+
T Consensus 417 ~~~ 419 (420)
T 3vl1_A 417 LSN 419 (420)
T ss_dssp SCC
T ss_pred ccC
Confidence 854
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=325.75 Aligned_cols=304 Identities=16% Similarity=0.250 Sum_probs=260.8
Q ss_pred cCCCce-EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 342 HQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 342 ~h~~~V-~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
+|.+.| +|+. ++|+ ++++|+.||+|+|||+.+++.+.. +.+|...|.+++|+ +++
T Consensus 116 ~h~~~v~~~~~--~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~~~ 171 (445)
T 2ovr_B 116 GHDDHVITCLQ--FCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--DNI 171 (445)
T ss_dssp CSTTSCEEEEE--EETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--TTE
T ss_pred ccCCCcEEEEE--EcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--CCE
Confidence 487765 5554 4677 799999999999999999987754 77899999999998 679
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
|++|+.||+|++||+.+++.+. .+.+|...|.++.|+ ++ .+++|+.||+|++|| .+++.+..+.+|...|.+
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 244 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 244 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEE
Confidence 9999999999999999987665 578999999999996 44 799999999999999 889999999999999999
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
+++ ++.++++|+.||.|++||+++.+....+..|...|.++.| ++.++++++. ++.|++||+.+++.+..
T Consensus 245 ~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 245 VQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNCIHT 314 (445)
T ss_dssp EEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred EEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCEEEE
Confidence 998 4578999999999999999999988899999999999999 7889999987 99999999999999999
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC-CCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
+.+|.. .+.++.+ +++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||.|++||+
T Consensus 315 ~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 315 LTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 998877 6766666 46799999999999999999999998887632 44589999995 579999999999999999
Q ss_pred CCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
.++ +.+..+...........+.+++|+|++..+
T Consensus 390 ~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 422 (445)
T 2ovr_B 390 KTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVC 422 (445)
T ss_dssp TTC-CEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred CCC-ceeeeeeccccCCCCceEEEEEecCCEEEE
Confidence 988 445444322223345678888988877665
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=312.45 Aligned_cols=247 Identities=15% Similarity=0.169 Sum_probs=202.6
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceee-cc-cccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-DA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l-~~-h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
.+.+|.+.|.+++|+|+ +||+|+.|++|++||+.++... ....+ .+ |.+.|++++|+|+++ +|++|+.|++|+
T Consensus 9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~ 83 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-LIDVLDETAHKKAIRSVAWRPHTS--LLAAGSFDSTVS 83 (330)
T ss_dssp EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-EEEEECTTCCCSCEEEEEECTTSS--EEEEEETTSCEE
T ss_pred eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-EEEEEecCCccCCEEEEEECCCCC--EEEEEeCCCcEE
Confidence 37889999999999998 9999999999999999875321 11134 34 999999999999999 899999999999
Q ss_pred EEEc-C-------CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC----CeeeEEeCCCCcEEEEEE
Q 001343 479 VWEL-S-------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM----GSRVDYDAPGHWCTTMLY 546 (1096)
Q Consensus 479 iwd~-~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~ 546 (1096)
+||. . .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||++.. +....+..|...|.+++|
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECT--TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 9993 2 346778899999999999977 6789999999999999999533 334567788899999999
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCCCC--eeeEEEcCcCccceEEEEEeCC--CCEEEEEEcCCeEEEEeCCCC-----
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNV----- 617 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~----- 617 (1096)
+|++.+|++++. |+.|++||..++ +++..+.+|.. .|.+++|+|+ +..+++++.|++|++||+..+
T Consensus 162 ~p~~~~l~s~s~----D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 162 HPSEALLASSSY----DDTVRIWKDYDDDWECVAVLNGHEG-TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp CSSSSEEEEEET----TSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred CCCCCEEEEEcC----CCeEEEEECCCCCeeEEEEccCCCC-cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 999999999997 999999998776 67888999987 8999999998 678999999999999998654
Q ss_pred ---eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 618 ---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 618 ---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.....+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus 237 ~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 237 QEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 23333332 134489999999665 7899999999999997543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-35 Score=336.48 Aligned_cols=385 Identities=9% Similarity=0.065 Sum_probs=277.1
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEEEEEECCCe
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHL 429 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~~~dg~ 429 (1096)
.|+|+++ .+++++ .|+. +++.+.. +..+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~-~~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQE-IVRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCC-CCCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCccc-cccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 4788888 466543 4873 4555432 1378999999999999 9999999999999
Q ss_pred EEEEEccC---CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c---CCceEEEeeCCCCCeEEEEe
Q 001343 430 IQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---SGRKLFNFEGHEAPVYSICP 502 (1096)
Q Consensus 430 i~vwd~~~---~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~---~~~~~~~~~~~~~~v~~~~~ 502 (1096)
|+|||+.+ +...+....+ +|.+.|++++|+|+++ +|++|+.||+|++|| . .++.+..+.+| .+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~ 162 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINL 162 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEc
Confidence 99999987 5433322223 5999999999999999 899999999999999 3 67777777666 5677776
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEE--EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML--YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~--~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
++.+ +...+.++. +++++.++++++. ++.|++||+++++.+..+
T Consensus 163 ~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 163 KNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQII 208 (437)
T ss_dssp GGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEEE
T ss_pred cCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEEE
Confidence 5521 122344444 6789999999987 999999999999999999
Q ss_pred cC--cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC----CCCEEEEEECCCcEE
Q 001343 581 AG--FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK----EGNLLAVTTADNGFK 654 (1096)
Q Consensus 581 ~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~ 654 (1096)
.+ |.. .+.+++|+|++.+|++|+.||.|++||+++++.+..+.... ...|.+++|+| ++.+|++++.||.|+
T Consensus 209 ~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 209 ENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp ECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred ccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 88 555 89999999999999999999999999999999998876322 23799996664 678999999999999
Q ss_pred EEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCC
Q 001343 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (1096)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 734 (1096)
+||+.++ +....+.++... +..+.|+|+++.+ ....
T Consensus 287 iwd~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~l-------------------------------------~~~~- 322 (437)
T 3gre_A 287 IWNFVKG-HCQYAFINSDEQ-----PSMEHFLPIEKGL-------------------------------------EELN- 322 (437)
T ss_dssp EEETTTT-EEEEEEESSSSC-----CCGGGGSCBCSSG-------------------------------------GGCC-
T ss_pred EEEcCCC-cEEEEEEcCCCC-----Cccceeccccccc-------------------------------------ccce-
Confidence 9999887 555555554322 3334444443322 1000
Q ss_pred CCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccc
Q 001343 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1096)
Q Consensus 735 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~ 814 (1096)
+.+ ..|...|.+++|+ ++..|++++.|+.|++|++..
T Consensus 323 ----------------------~~~-~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~------------------- 359 (437)
T 3gre_A 323 ----------------------FCG-IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE------------------- 359 (437)
T ss_dssp ----------------------CCC-CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-------------------
T ss_pred ----------------------ecc-cccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-------------------
Confidence 000 1178899999999 778899999999999999743
Q ss_pred cCccccccccccC-CCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCC--CcEEEEe
Q 001343 815 PSSGLLMANDVAG-VNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD--NNIIAIG 891 (1096)
Q Consensus 815 ~~~~~~~~~~~~g-~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d--~~~l~s~ 891 (1096)
+++.. .+.+ ......+....++++..+++.. |+...+.....+..|...|++++|++ + +.+|++|
T Consensus 360 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~h~~~I~~i~~~~-~~~~~~l~s~ 427 (437)
T 3gre_A 360 ---LSSSK-AVISPSRFSDVFIPTQVTANLTMLLRK-------MKRTSTHSVDDSLYHHDIINSISTCE-VDETPLLVAC 427 (437)
T ss_dssp ---GGGCE-EEECC--CCCEEEEEEEETTEEEEEEE-------CC-------------CCCEEEEEEEE-SSSSEEEEEE
T ss_pred ---cccce-EEecccccCceEEEEEeecceEEEEEe-------cccccccccCcccccccceeeEeeec-cCCceEEEEE
Confidence 22222 1222 0023344555666666555544 33334445556677999999999999 6 7899999
Q ss_pred eCCCeEEEEe
Q 001343 892 TEDSTIHIYN 901 (1096)
Q Consensus 892 ~~dg~i~iw~ 901 (1096)
+.||.|+||+
T Consensus 428 ~~dG~I~iw~ 437 (437)
T 3gre_A 428 DNSGLIGIFQ 437 (437)
T ss_dssp ETTSCEEEEC
T ss_pred cCCceEEEeC
Confidence 9999999995
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=339.73 Aligned_cols=349 Identities=9% Similarity=0.033 Sum_probs=246.5
Q ss_pred CCCCEEEEEEcCCC---------CEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 405 VPISVSRVAWSPDG---------NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 405 h~~~V~~l~~spd~---------~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 57789999999987 799999876420 01268888 899999999
Q ss_pred cEEEEE-cCCceE----EEeeCCCCCeEEEEeeec----CCCcEEEEEECCCeEEEEEcCCCCe-----------eeEEe
Q 001343 476 LIKVWE-LSGRKL----FNFEGHEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGS-----------RVDYD 535 (1096)
Q Consensus 476 ~i~iwd-~~~~~~----~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~ 535 (1096)
+|+||| ..++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999 655542 446778899999999986 3467999999999999999976542 23567
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC-eeeEEEcCcCccceEEE--EEeCCC-CEEEEEEcCCeEEE
Q 001343 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVV--QFDTTQ-NHFLAVGEDSQIKF 611 (1096)
Q Consensus 536 ~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i 611 (1096)
.|...|.+++|++++ .|++++. |+.|++||++++ .+...+.+|.. .|.++ .|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788899999999864 7888886 999999999976 44566888887 78888 578887 89999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCe
Q 001343 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1096)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 691 (1096)
||+++++....+..+.....|.+++|+|++..+++++.|++|++||+.++. +..
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~------------------------- 391 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVH------------------------- 391 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCE-------------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-cce-------------------------
Confidence 999988776666554332358899999999999999999999999986541 100
Q ss_pred EEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEE
Q 001343 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1096)
Q Consensus 692 lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1096)
.+.+ |...|.+++
T Consensus 392 ----------------------------------------------------------------~l~g---H~~~V~sva 404 (524)
T 2j04_B 392 ----------------------------------------------------------------PLVS---RETTITAIG 404 (524)
T ss_dssp ----------------------------------------------------------------EEEE---CSSCEEEEE
T ss_pred ----------------------------------------------------------------eeec---CCCceEEEE
Confidence 1112 888999999
Q ss_pred EecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC
Q 001343 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (1096)
Q Consensus 772 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d 851 (1096)
|+|+++.|++++.||+|++|++.... +....+ .....+...+.+++|+|+|+.+.. .
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~---------------~~~~~~------~~~~~~~~~v~~v~~sp~g~~~~~-~- 461 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRL---------------LHGIKN------SSATQKSLRLWKWDYSIKDDKYRI-D- 461 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSST---------------TTCC------------CCCCEEEECBCCSSSCEEEE-C-
T ss_pred eCCCCCeEEEEECCCEEEEEechHhh---------------cccccc------CccceeeeEEEEeccCCCCCeEEc-c-
Confidence 99999999999999999999963311 000000 000001235778999999986533 2
Q ss_pred CeEEEEEcc-cceEEEeecCCCCCeeEEEEecCCC---cEEEEeeCCCeEEEEeecc
Q 001343 852 GKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDN---NIIAIGTEDSTIHIYNVRV 904 (1096)
Q Consensus 852 g~v~iwd~~-~~~~~~~~~~h~~~i~~l~~s~~d~---~~l~s~~~dg~i~iw~~~~ 904 (1096)
+.+++|+.. ++.++.++.+|...|.+|+|+| ++ ..+++|+.||.|+||++..
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 233344432 5778889999999999999999 64 5999999999999999864
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=322.64 Aligned_cols=278 Identities=16% Similarity=0.261 Sum_probs=244.0
Q ss_pred ecCCCc-eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 341 LHQGST-VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 341 l~h~~~-V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
.+|... +.|+.|+ ++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+|++
T Consensus 118 ~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~~~- 174 (464)
T 3v7d_B 118 RGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAHGG- 174 (464)
T ss_dssp ECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECSTT-
T ss_pred cCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcCCC-
Confidence 348777 4777774 55 799999999999999999887753 77899999999999988
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec--CCCcEEEEEEeCCCcEEEEE-cCCc-----------
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGR----------- 485 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~--d~~~~~l~s~s~d~~i~iwd-~~~~----------- 485 (1096)
+|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++|| .++.
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 249 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------CCS
T ss_pred EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccCCc
Confidence 99999999999999999987665 5789999999999995 556 899999999999999 5544
Q ss_pred ------------eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEE
Q 001343 486 ------------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 486 ------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
.+..+.+|...|.++.. ++.++++++.||.|++||+++.+....+..|...|.+++|+|+++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 250 PLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp SEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred ceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 25567889999998853 45799999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
++++. ++.|++||+.+++.+..+.+|.. .+.++.++ +.++++++.||.|++||+.++......... ..+.
T Consensus 326 ~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---~~~~ 395 (464)
T 3v7d_B 326 ISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT---NLSA 395 (464)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---TCCC
T ss_pred EEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---CCcc
Confidence 99987 99999999999999999999987 88889887 589999999999999999998776666432 2678
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.++|++++.++++++ ||.|++||+.++
T Consensus 396 ~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 396 ITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred EEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 899999999999998 899999999877
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=335.02 Aligned_cols=307 Identities=15% Similarity=0.213 Sum_probs=259.6
Q ss_pred eeecCCCCc-ceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCC----CeeecccceeecccccCccccccc
Q 001343 327 TWSLDDLPR-TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR----DRLVSKPFKIWDMAACSLPFQASI 401 (1096)
Q Consensus 327 ~~~~~~~~~-~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1096)
+|++..... ..+..+.|...|++++|+|+++ +||+|+.||.|+|||+.+. +.+. .
T Consensus 49 iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~-------------------~ 108 (416)
T 2pm9_A 49 LWSLLAADSEKPIASLQVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAINSMA-------------------R 108 (416)
T ss_dssp EEESSSGGGCSCSCCCCCSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCCEEE-------------------E
T ss_pred EEEccCCCCCcEEEEEecCCceEEEEECCCCC-eEEEEccCCeEEEeecccccccccchh-------------------h
Confidence 898876443 3556677999999999999999 6999999999999999872 2322 2
Q ss_pred cccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCC------ccccceeecccccCEEEEEEecC-CCcEEEEEEeC
Q 001343 402 FKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSN------DLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGD 473 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~s~ 473 (1096)
+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ .......+.+|...|.+++|+|+ +. +|++++.
T Consensus 109 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~ 186 (416)
T 2pm9_A 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH--VFASAGS 186 (416)
T ss_dssp CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTT--EEEEESS
T ss_pred ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCc--EEEEEcC
Confidence 7789999999999998 8999999999999999999876 33333345689999999999999 55 8999999
Q ss_pred CCcEEEEE-cCCceEEEeeCC------CCCeEEEEeeecCCCcEEEEEECCC---eEEEEEcCCC-CeeeEEe-CCCCcE
Q 001343 474 DKLIKVWE-LSGRKLFNFEGH------EAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTM-GSRVDYD-APGHWC 541 (1096)
Q Consensus 474 d~~i~iwd-~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~i 541 (1096)
|+.|++|| .+++.+..+..| ...|.+++|+|.+ ..++++++.|+ .|++||+++. .....+. .|...|
T Consensus 187 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v 265 (416)
T 2pm9_A 187 SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN-STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI 265 (416)
T ss_dssp SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC-TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE
T ss_pred CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC-CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCce
Confidence 99999999 888888888876 7899999998752 36899999999 9999999986 4555666 788899
Q ss_pred EEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeE
Q 001343 542 TTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 542 ~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 619 (1096)
.+++|+| ++++|++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++ .++++++.||.|++|++.++..
T Consensus 266 ~~~~~s~~~~~~l~s~~~----dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGR----DNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EEEEECSSCSSCEEEEES----SSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred eEEEeCCCCCCeEEEEeC----CCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 9999999 9999999987 99999999999999999999887 88899999998 8999999999999999987653
Q ss_pred EEEeec--------------------C-------------CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 620 LTSTDA--------------------E-------------GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 620 ~~~~~~--------------------~-------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
...... + .+...+.+++|+|+|++|++++.|+.|++|++.+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 341 TLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 221100 0 02346779999999999999999999999998754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=319.81 Aligned_cols=319 Identities=19% Similarity=0.320 Sum_probs=271.1
Q ss_pred ccccCCCCE-EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 401 IFKDVPISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 401 ~~~~h~~~V-~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.+.+|.+.| .| ++++|++|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+ +. .+++|+.||+|++
T Consensus 113 ~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~v 183 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKV 183 (445)
T ss_dssp EEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEE
T ss_pred EecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEE
Confidence 377898875 55 45568999999999999999999988766 578999999999998 44 8999999999999
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
|| .+++.+..+.+|...|.++.++ +..+++|+.||+|++||+++++....+..|...|.++.+ +++++++++.
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred EECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence 99 8899999999999999999984 358999999999999999999999999999999999999 7888999987
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
++.|++||+.+++.+..+.+|.. .+.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+
T Consensus 258 ----dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~- 327 (445)
T 2ovr_B 258 ----DFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL- 327 (445)
T ss_dssp ----TSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred ----CCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence 99999999999999999998887 7888888 788999999999999999999999988877654 6777666
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~ 718 (1096)
+++++++++.||.|++||+.++. ...
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~-~~~---------------------------------------------------- 353 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQ-CLQ---------------------------------------------------- 353 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCC-EEE----------------------------------------------------
T ss_pred -eCCEEEEEeCCCeEEEEECCCCc-EEE----------------------------------------------------
Confidence 56799999999999999986541 000
Q ss_pred CCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCcc
Q 001343 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (1096)
Q Consensus 719 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~ 798 (1096)
.+.+
T Consensus 354 -------------------------------------~~~~--------------------------------------- 357 (445)
T 2ovr_B 354 -------------------------------------TLQG--------------------------------------- 357 (445)
T ss_dssp -------------------------------------EECS---------------------------------------
T ss_pred -------------------------------------EEcc---------------------------------------
Confidence 0000
Q ss_pred CCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEee-----cCCC
Q 001343 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF-----MSPP 872 (1096)
Q Consensus 799 ~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~-----~~h~ 872 (1096)
.. .|...|.+++|+ +++|++++ ||.|++||+.+++.+..+ .+|.
T Consensus 358 --------------------------~~--~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 407 (445)
T 2ovr_B 358 --------------------------PN--KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407 (445)
T ss_dssp --------------------------TT--SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGT
T ss_pred --------------------------CC--CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCC
Confidence 00 155667777774 56788887 788999999888888877 4788
Q ss_pred CCeeEEEEecCCCcEEEEeeCCCe----EEEEeeccc
Q 001343 873 PASTFLAFHPQDNNIIAIGTEDST----IHIYNVRVD 905 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~~l~s~~~dg~----i~iw~~~~~ 905 (1096)
+.|++++|+| ++.++++|+.||+ |.+||+...
T Consensus 408 ~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 408 GVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCCC
Confidence 8999999999 8999999999998 999998753
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=333.59 Aligned_cols=293 Identities=17% Similarity=0.236 Sum_probs=237.7
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 420 (1096)
.|...|+|++|||.+..+||+|+.||.|+|||+.+++.... ..+.+|.+.|++|+|+| ++++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~~ 179 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTNQ 179 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTTE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCCE
Confidence 48889999999996555899999999999999987764321 12678999999999998 7899
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~ 500 (1096)
|++|+.||+|++||++++. .........+...+.+++|+|++. +|++|+.||.|++||.+++.+..+.+|...|+++
T Consensus 180 l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 180 FYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEE
T ss_pred EEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCcceeEEEecccceEEee
Confidence 9999999999999998753 332222334556788999999999 8999999999999997788889999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeee---EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
+|+|.. ..++++|+.||+|++||+++..... ....|...|.+++|+|+|++|++++. |+.|++||+.++...
T Consensus 257 ~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 998754 2588899999999999998766543 33567789999999999999999997 999999999999888
Q ss_pred EEEcCcCcc-----ceEEEEEeCCCCEEEEEE------------cCCeEEEEeCCCCeEEEEeecCCCCCCccEE-EEeC
Q 001343 578 RTYAGFRKK-----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRL-RFSK 639 (1096)
Q Consensus 578 ~~~~~~~~~-----~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~ 639 (1096)
..+..|... ......|+|++..+++++ .++.|++||..+++.+..+.... ...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECC
Confidence 887665431 122356777777776664 34679999999999988775432 3367777 6999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001343 640 EGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 640 ~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+|.+|++|+ |+.|+||++.++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999999876 779999999887
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-34 Score=320.37 Aligned_cols=292 Identities=15% Similarity=0.109 Sum_probs=247.4
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCC--eeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
|.++|++++|+|+|+ +||+|+.|+.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 889999999999999 79999999999999998876 332 26789999999999999999
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce---E-EEeeCCCC
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK---L-FNFEGHEA 495 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~---~-~~~~~~~~ 495 (1096)
|++++.||.|++||+.+++..... .+..|...|.+++|+|+++ +|++++.|+.|++|| ..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPTL-VILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEE-ECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeeeeE-EeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 999999999999999887643322 3567999999999999999 899999999999999 55552 2 33367899
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcC------------------CCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYD------------------TMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
.|.+++|+| ++.+|++++.||.|++||++ .......+..|...|.+++|+|+++++++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999977 66899999999999999954 5566677778888999999999999999998
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC--CeEE---------------
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNIL--------------- 620 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 620 (1096)
. ++.|++||+.+++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 7 99999999999999999998876 89999999999877777 999999999987 4311
Q ss_pred -----------------------EEeecCCCCCCccEEEEe-CCC---CEEEEEECCCcEEEEEcCCCccccc
Q 001343 621 -----------------------TSTDAEGGLPNLPRLRFS-KEG---NLLAVTTADNGFKILANAIGLRSLR 666 (1096)
Q Consensus 621 -----------------------~~~~~~~~~~~v~~~~~s-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 666 (1096)
..+. ..|...|++++|+ ++| .+|++++.||.|++|++.++.+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 1111 2445589999976 576 9999999999999999987644433
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=349.93 Aligned_cols=514 Identities=12% Similarity=0.023 Sum_probs=366.4
Q ss_pred ceeecCCCce-eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCC------CeEEEEecCCCCeeecccceeec
Q 001343 317 EVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN------GEITLWELAMRDRLVSKPFKIWD 389 (1096)
Q Consensus 317 ~v~~~~~~~~-~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~d------g~I~iwd~~~~~~~~~~~~~~~~ 389 (1096)
.++|...... +|+.+ .+.......|...|.+++|||||+ .||.++.+ ..|.+|++.+++...
T Consensus 26 ~iaf~~~~~l~~~~~~--gg~~~~lt~~~~~v~~~~~SPDG~-~la~~s~~~~~~~~~~i~~~d~~~g~~~~-------- 94 (1045)
T 1k32_A 26 RIIFVCCDDLWEHDLK--SGSTRKIVSNLGVINNARFFPDGR-KIAIRVMRGSSLNTADLYFYNGENGEIKR-------- 94 (1045)
T ss_dssp EEEEEETTEEEEEETT--TCCEEEEECSSSEEEEEEECTTSS-EEEEEEEESTTCCEEEEEEEETTTTEEEE--------
T ss_pred EEEEEECCcEEEEECC--CCcEEEeeeCCCcccCeEECCCCC-EEEEEEeeccCCCCCeEEEEECCCCCeEE--------
Confidence 4666655432 45544 445555567999999999999999 47766433 489999998876432
Q ss_pred ccccCccccccccccCCCCE-------EEEEEcCCCCEEEEEECC------CeEEEEEccCCCccccceeecccccCEEE
Q 001343 390 MAACSLPFQASIFKDVPISV-------SRVAWSPDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVND 456 (1096)
Q Consensus 390 ~~~~~~~~~~~~~~~h~~~V-------~~l~~spd~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~ 456 (1096)
+..|...+ .+++|||||+.+++++.+ ..|.+|++.+++... +..+. ...
T Consensus 95 ------------lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~--~~~ 156 (1045)
T 1k32_A 95 ------------ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLGP--ATH 156 (1045)
T ss_dssp ------------CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSCS--CSE
T ss_pred ------------cccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCCC--cce
Confidence 66788888 999999999977777654 368888887765432 32332 346
Q ss_pred EEEecCCCcEEEEEEeC------------CCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEE
Q 001343 457 LAFAYPNKLLCVVTCGD------------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1096)
Q Consensus 457 l~~s~d~~~~~l~s~s~------------d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 523 (1096)
++|+| | ++++++. +...++|. ..+.....+.+|...+.++.|++ + .++++++.||.+++|
T Consensus 157 ~~~sp-G---~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~ 229 (1045)
T 1k32_A 157 ILFAD-G---RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIY 229 (1045)
T ss_dssp EEEET-T---EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEE
T ss_pred eeeCC-C---EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEE
Confidence 77999 6 4666652 34567776 44456667789999999999965 4 577788889999999
Q ss_pred EcCCC-CeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC----------ccceEEEE
Q 001343 524 LYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----------KKSNGVVQ 592 (1096)
Q Consensus 524 d~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~i~~~~ 592 (1096)
.++.. .....+..+. .+...+|+|||+.++.+. ++.|++||...... ..+.++. ...+..++
T Consensus 230 ~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~ 302 (1045)
T 1k32_A 230 STDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAED 302 (1045)
T ss_dssp EEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEE
T ss_pred EEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-----CCEEEEecCCceEe-eeeccCcccccccccccccccceee
Confidence 87653 3333444443 466779999999998874 88999999954443 3554421 11477899
Q ss_pred Ee-CCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCC-CccEEEEeCCCCEEEEEECCCcEE-EEEcCCCcccccccc
Q 001343 593 FD-TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP-NLPRLRFSKEGNLLAVTTADNGFK-ILANAIGLRSLRAVE 669 (1096)
Q Consensus 593 ~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~ 669 (1096)
|+ |+|+.+++++ ++.|++|+...+.... +.. +.. .+..++|+ +|+.+++++.++.+. +|++.++. .
T Consensus 303 ~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-~----- 371 (1045)
T 1k32_A 303 FSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPE--PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-A----- 371 (1045)
T ss_dssp EEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSC--CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-E-----
T ss_pred ecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccC--CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-c-----
Confidence 99 9999998887 7899999998877554 322 223 67889999 999999998877777 77765431 0
Q ss_pred CCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecC
Q 001343 670 NPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS 749 (1096)
Q Consensus 670 ~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~ 749 (1096)
T Consensus 372 -------------------------------------------------------------------------------- 371 (1045)
T 1k32_A 372 -------------------------------------------------------------------------------- 371 (1045)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCC
Q 001343 750 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (1096)
Q Consensus 750 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~ 829 (1096)
. .+.+ +...+..++|+|||+.|++++.++.+++|++.. ++... .+.+
T Consensus 372 ---~--~l~~---~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t----------------------g~~~~-~~~~-- 418 (1045)
T 1k32_A 372 ---E--KFEE---NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET----------------------GKPTV-IERS-- 418 (1045)
T ss_dssp ---E--ECCC---CCCSEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------CCEEE-EEEC--
T ss_pred ---e--EecC---CccceeeeEECCCCCEEEEECCCCeEEEEECCC----------------------CceEE-eccC--
Confidence 0 0112 556788999999999999999999999988632 33222 1223
Q ss_pred cCCCeeeeeecCCCcEEEEec-CC----------eEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEE
Q 001343 830 LEEAVPCIALSKNDSYVMSAT-GG----------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~~la~~~-dg----------~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~ 898 (1096)
|...+.+++|||||++||+++ ++ .|++||+.+++ +..+..|...+..++|+| ||++|++++.++...
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~ 496 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDP 496 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCC
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCc
Confidence 778889999999999998876 33 79999998887 677888888899999999 999999999988888
Q ss_pred EEeecccee------eeeec--c--ccc-----------------cc-cceeeecCCCCCCCCCceEEEecCCcEEEE--
Q 001343 899 IYNVRVDEL------CVWSI--D--TWE-----------------KR-KSVTIHIPAGKTPTGDTRVQFNADQVRMLV-- 948 (1096)
Q Consensus 899 iw~~~~~~~------~~w~~--~--~~~-----------------~~-~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-- 948 (1096)
+|+...... ..|.+ . ... .. ....+..+..+.. .+..++|+|||+.+++
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~-~~~~~~~s~dg~~~~~~~ 575 (1045)
T 1k32_A 497 SPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG-DYRMIIPLESSILIYSVP 575 (1045)
T ss_dssp EECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB-CEEEEEECSSEEEEEECC
T ss_pred CcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCC-ChhheEEcCCCeEEEEec
Confidence 887654331 01100 0 000 00 0011222333433 6889999999997874
Q ss_pred ------------EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCc
Q 001343 949 ------------VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 949 ------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
.....|.+||+.+++.. .+. ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 576 ~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 576 VHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ccCcccccccccCCCceEEEEECCCCcEE-Eee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 13557899999888742 222 347889999999999988876 89999998876
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=317.68 Aligned_cols=294 Identities=13% Similarity=0.203 Sum_probs=244.6
Q ss_pred eEEeec-CCCceEEEEEcCCCCcEEEEEeC---CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 337 VAVSLH-QGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 337 ~~~~l~-h~~~V~~v~fsp~g~~llasg~~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
+.+.+. |...|++++|+|++.+++++|+. ||.|+|||+.+++.... ...+|...|.++
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~ 71 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCG 71 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEE
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEE
Confidence 334444 99999999999999877888877 99999999998876532 123689999999
Q ss_pred EEcCC---CCEEEEEECCCeEEEEEccCCC-ccccceeecccccCEEEEEE------ecCCCcEEEEEEeCCCcEEEEE-
Q 001343 413 AWSPD---GNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 413 ~~spd---~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~l~~h~~~v~~l~~------s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
+|+|+ +++|++|+.||.|++||+.+++ .+. .+.+|...|.++.| +|+++ .|++++.|+.|++||
T Consensus 72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDP 146 (357)
T ss_dssp ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECT
T ss_pred EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeC
Confidence 99998 7999999999999999999887 444 57899999999965 67888 899999999999999
Q ss_pred cCCc-eEEEeeCCCC----CeEEEEeee--cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC---CCC
Q 001343 482 LSGR-KLFNFEGHEA----PVYSICPHH--KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA---DGS 551 (1096)
Q Consensus 482 ~~~~-~~~~~~~~~~----~v~~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~---~~~ 551 (1096)
.+++ .+..+..|.+ .+.+++|.+ .+++.++++++.||.|++||+++.+... ...+...|.+++|+| ++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~ 225 (357)
T 3i2n_A 147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMN 225 (357)
T ss_dssp TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCC
T ss_pred CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCC
Confidence 6665 6778876655 788888422 3367899999999999999999877644 456677899999999 999
Q ss_pred EEEEEeeccCCCCeEEEEeCCCCeeeEEEc-----CcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCC--------
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYA-----GFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV-------- 617 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-------- 617 (1096)
++++++. ++.|++||+++++....+. +|.. .+.+++|+|++. ++++++.||.|++||+..+
T Consensus 226 ~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 226 KLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp EEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT
T ss_pred EEEEECC----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC
Confidence 9999987 9999999999887666554 7766 899999999998 8999999999999999754
Q ss_pred -----------eEEEEeecCCCCCCccEEEEeCCCCEEE-EEECCCcEEEEEcCCC
Q 001343 618 -----------NILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIG 661 (1096)
Q Consensus 618 -----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~ 661 (1096)
+.+..+..+.. .|.+++|+|++++|+ +++.|+.|++|++.+.
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLSTQ--PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCccccccccceeeccccCCC--CeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 34556666644 899999999999998 8999999999999765
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=319.45 Aligned_cols=319 Identities=18% Similarity=0.292 Sum_probs=270.9
Q ss_pred cccCCCCE-EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 402 FKDVPISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 402 ~~~h~~~V-~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
+.+|...| .++.+ ++++|++|+.||+|++||+.+++.+. .+.+|.+.|++++|++++ .|++|+.||+|++|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence 67788774 66666 57899999999999999999987666 578999999999999877 69999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-----------------------eeEEeC
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-----------------------RVDYDA 536 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~~ 536 (1096)
| .+++++..+.+|...|.+++|++.+++.++++|+.||+|++||+++... ...+..
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 9 8899999999999999999999877889999999999999999987653 234556
Q ss_pred CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 537 ~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
|...+.++ +++++++++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|+++.+++|+.||.|++||+.+
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 66677766 578899999987 99999999999999999999887 899999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecC
Q 001343 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
++.+..+..|.. .|.+++|+ +.++++++.||.|++||+.++..
T Consensus 342 ~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~--------------------------------- 384 (464)
T 3v7d_B 342 GELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSR--------------------------------- 384 (464)
T ss_dssp TEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCE---------------------------------
T ss_pred CcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEEECCCCce---------------------------------
Confidence 999999887755 88999987 57999999999999999754300
Q ss_pred CCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCC
Q 001343 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (1096)
Q Consensus 697 s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 776 (1096)
T Consensus 385 -------------------------------------------------------------------------------- 384 (464)
T 3v7d_B 385 -------------------------------------------------------------------------------- 384 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEE
Q 001343 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISL 856 (1096)
Q Consensus 777 ~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~i 856 (1096)
.... .+...+..++|++++++|+++++|.|++
T Consensus 385 --~~~~----------------------------------------------~~~~~~~~~~~~~~~~~l~~~~dg~i~i 416 (464)
T 3v7d_B 385 --KFSY----------------------------------------------HHTNLSAITTFYVSDNILVSGSENQFNI 416 (464)
T ss_dssp --EEEE----------------------------------------------ECTTCCCEEEEEECSSEEEEEETTEEEE
T ss_pred --eeee----------------------------------------------cCCCCccEEEEEeCCCEEEEecCCeEEE
Confidence 0000 0233455678899999999999999999
Q ss_pred EEcccceEEEe-ecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEee
Q 001343 857 FNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1096)
Q Consensus 857 wd~~~~~~~~~-~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~ 902 (1096)
||+.+++.+.. +..|...|.+++|+. ..++++++.||.+.+|-+
T Consensus 417 wd~~~g~~~~~~~~~~~~~v~~v~~~~--~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 417 YNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EETTTCCEEESCTTTTCSEEEEEEEET--TEEEEEEEETTEEEEEEE
T ss_pred EECCCCcEEehhhccCCCcEEEEEecC--CEEEEEEEeCCeEEEEEe
Confidence 99999999986 678899999999974 667777788887766644
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=305.68 Aligned_cols=298 Identities=17% Similarity=0.264 Sum_probs=247.2
Q ss_pred ccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCcc--ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
.|.||.+.|++|+|+|+ +++||||+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 48899999999999997 689999999999999999876543 22346789999999999999999 89999999999
Q ss_pred EEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCC--CEE
Q 001343 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADG--SRL 553 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~--~~l 553 (1096)
++|+ ..+........+...+..+.+.+ ++.+|++++.||.+++||........ ....+...+..++|++++ ..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 9999 77888888888888888888866 56799999999999999987655433 345677789999998875 456
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+.+.+..+..+. .|.
T Consensus 189 ~s~~~----d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~ 260 (340)
T 4aow_A 189 VSCGW----DKLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---IIN 260 (340)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEcC----CCEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eEE
Confidence 67765 89999999999999999999987 89999999999999999999999999999999998887653 789
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~ 713 (1096)
++.|+|++.++ +++.|+.|++||+.++ .....+...
T Consensus 261 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~-~~~~~~~~~------------------------------------------ 296 (340)
T 4aow_A 261 ALCFSPNRYWL-CAATGPSIKIWDLEGK-IIVDELKQE------------------------------------------ 296 (340)
T ss_dssp EEEECSSSSEE-EEEETTEEEEEETTTT-EEEEEECCC------------------------------------------
T ss_pred eeecCCCCcee-eccCCCEEEEEECCCC-eEEEecccc------------------------------------------
Confidence 99999988655 5567899999998765 222221111
Q ss_pred cccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeec
Q 001343 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1096)
Q Consensus 714 ~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~ 793 (1096)
.......+ |...|.+++|+|++++|++++.||.|++|++
T Consensus 297 --------------------------------------~~~~~~~~---h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 297 --------------------------------------VISTSSKA---EPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ---------------------------------------------C---CCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred --------------------------------------ceeeeccC---CCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 00011223 8889999999999999999999999999997
Q ss_pred cC
Q 001343 794 HR 795 (1096)
Q Consensus 794 ~~ 795 (1096)
..
T Consensus 336 ~t 337 (340)
T 4aow_A 336 TI 337 (340)
T ss_dssp EC
T ss_pred CC
Confidence 54
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=320.51 Aligned_cols=290 Identities=15% Similarity=0.236 Sum_probs=244.9
Q ss_pred cCCCceEEEEEcCC---CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-
Q 001343 342 HQGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~---g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 417 (1096)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCC
Confidence 49999999999994 444566677788999999998876542 1 11112237789999999999
Q ss_pred ---CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec-CCCcEEEEEEeCCCcEEEEE-cCCceEEEe--
Q 001343 418 ---GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (1096)
Q Consensus 418 ---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-- 490 (1096)
+++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.||.|++|| .+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999987766 5778999999999999 788 899999999999999 888888888
Q ss_pred -eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe----------------------------CCCCcE
Q 001343 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----------------------------APGHWC 541 (1096)
Q Consensus 491 -~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~i 541 (1096)
.+|...|.+++|+| ++.+|++++.||.|++||+++.+....+. .+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 78999999999977 66899999999999999998765433222 377899
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee--------------eEEEcCcCccceEEEEEeCC--CCEEEEEEc
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--------------KRTYAGFRKKSNGVVQFDTT--QNHFLAVGE 605 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~ 605 (1096)
.+++|+ ++++++++. ++.|++||+.++.. +..+.+|.. .+.+++|+|+ +++|++++.
T Consensus 235 ~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999998 779999887 99999999987643 777888876 7888999999 999999999
Q ss_pred CCeEEEEeCCCCe----EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 606 DSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 606 dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999875 44467766545689999999999999999999999999985
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=322.78 Aligned_cols=298 Identities=13% Similarity=0.189 Sum_probs=245.0
Q ss_pred CCcceEEee-c-CCCceEEEEEcC-CCCcEEEEEeCCCeEEEEecCC---CCeeecccceeecccccCccccccccccCC
Q 001343 333 LPRTVAVSL-H-QGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM---RDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 333 ~~~~~~~~l-~-h~~~V~~v~fsp-~g~~llasg~~dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
..++++..+ . |.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +..... ....+|.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~ 111 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCS 111 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECS
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCC
Confidence 456777777 4 889999999999 998 799999999999999977 432110 0122599
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEcc---CCCccccce-------eecc--cccCEEEEE--EecCCCcEEEEEEe
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYA---GSNDLRQHS-------QIDA--HVGAVNDLA--FAYPNKLLCVVTCG 472 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~---~~~~~~~~~-------~l~~--h~~~v~~l~--~s~d~~~~~l~s~s 472 (1096)
..|.+++|+|++++|++|+.||.|++||+. +++...... .+.. +...+.++. +++++. +|++|+
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~ 189 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS--LLVALT 189 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE--EEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC--EEEEEe
Confidence 999999999999999999999999999995 444433110 1112 566777777 457777 899999
Q ss_pred CCCcEEEEE-cCCceEEEeeC--CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-CCCCcEEEEEEc-
Q 001343 473 DDKLIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYS- 547 (1096)
Q Consensus 473 ~d~~i~iwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s- 547 (1096)
.|+.|++|| .+++++..+.+ |...|++++|+| ++.+|++|+.||.|++||++++.....+. .+...|.+++++
T Consensus 190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence 999999999 89999999998 899999999977 56899999999999999999988877775 666689999665
Q ss_pred ---CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC-------------------------ccceEEEEEeCCCCE
Q 001343 548 ---ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-------------------------KKSNGVVQFDTTQNH 599 (1096)
Q Consensus 548 ---~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-------------------------~~~i~~~~~~~~~~~ 599 (1096)
+++.++++++. ++.|++||+.+++.+..+.++. ...+.+++|+ ++++
T Consensus 268 ~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~ 342 (437)
T 3gre_A 268 FYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKI 342 (437)
T ss_dssp TTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred ccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceE
Confidence 46778999886 9999999999999998887652 2357788999 7789
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEeecCC-----------------------------------CCCCccEEEEeCC--CC
Q 001343 600 FLAVGEDSQIKFWDMDNVNILTSTDAEG-----------------------------------GLPNLPRLRFSKE--GN 642 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~~~~s~~--~~ 642 (1096)
|++|+.||.|++||+.+++....+..+. +...|++++|+++ +.
T Consensus 343 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~ 422 (437)
T 3gre_A 343 LLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETP 422 (437)
T ss_dssp EEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSE
T ss_pred EEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCce
Confidence 9999999999999999988777766531 4558999999998 78
Q ss_pred EEEEEECCCcEEEEE
Q 001343 643 LLAVTTADNGFKILA 657 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd 657 (1096)
+|++|+.||.|++|+
T Consensus 423 ~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 423 LLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEETTSCEEEEC
T ss_pred EEEEEcCCceEEEeC
Confidence 999999999999995
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=317.91 Aligned_cols=315 Identities=11% Similarity=0.070 Sum_probs=245.3
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
-...|.+|+|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 356899999999999 799999999999 6444332 46799999999999998
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCC-----Ce
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-----PV 497 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-----~v 497 (1096)
.++.+.+|+.+....+ .+ +|...|.+++|+|||+ .|++++.||.|++||..+ ++..+. |.. .|
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCE
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccE
Confidence 4555555554332211 12 5688999999999999 899999999999999444 677777 765 49
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-------eeEE----eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-------RVDY----DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
.+++|+| +|++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+|+| +++++. |+.+
T Consensus 133 ~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 9999977 779999999999999999998752 3454 5566799999999999 666665 9999
Q ss_pred EEEeCCCCee---eEEEc-CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE--eCC
Q 001343 567 VEWNESEGTI---KRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF--SKE 640 (1096)
Q Consensus 567 ~iwd~~~~~~---~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~~ 640 (1096)
++||+.++.. .+++. +|.. .|..++|+ +..+++++ ++.|++||+.+++......+| ...|..++| +|+
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~~~s~d 278 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEETTCSS
T ss_pred EEEECCCCccccceeeecccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEeeeCCC
Confidence 9999988773 35664 5554 88899999 68888887 699999999988875444344 448999999 999
Q ss_pred CCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCC
Q 001343 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~ 720 (1096)
+..+++++.||+ ++|... .++++|++.
T Consensus 279 ~~~La~a~edG~-klw~~d----------------------~~~~spd~~------------------------------ 305 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED----------------------ELHVTADNI------------------------------ 305 (588)
T ss_dssp CEEEEECSSCEE-EEEESS----------------------SEEEECCCS------------------------------
T ss_pred CCEEEEEcCCCC-EEEeec----------------------cEEECCCce------------------------------
Confidence 999999999999 999875 144655554
Q ss_pred ccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeec
Q 001343 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (1096)
Q Consensus 721 ~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 784 (1096)
.+++. |+++++|+.. .+... .-+ +...|.+++|||||+.+++++.
T Consensus 306 -------l~a~~--d~~v~lW~~~----g~~l~---~~~---~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 306 -------IAPYL--EKKFKKWSTI----WNEFN---NYE---TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -------SHHHH--HHHHHHTTTT----TTSSS---SSC---CEEEEEEEEECTTSSEEEEEEE
T ss_pred -------EEEEc--CCEEEEEECC----CCcee---eec---cceEEEEEEECCCCCEEEEEEe
Confidence 44554 6999999975 22211 111 4567999999999997766654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=324.89 Aligned_cols=285 Identities=13% Similarity=0.090 Sum_probs=225.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCC--CeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
|.++|+|++|+|+|+ +||+|+.|+.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 667999999999999 7999999999999999987 3332 37789999999999999999
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc---eEEEeeC-CCC
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEG-HEA 495 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~---~~~~~~~-~~~ 495 (1096)
|++|+.|+.|++||+.+++.......+.+|...|++++|+|+++ +|++|+.|+.|++|| ..++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873333345778999999999999999 899999999999999 6655 4677887 999
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC------------------CeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM------------------GSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
.|.+++|+| ++.+|++++.||.|++||++.. .....+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999987 6689999999999999998632 233334 7778999999999999999998
Q ss_pred eccCCCCeEEEEeCCCCee----eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe---------------
Q 001343 558 TSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--------------- 618 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------- 618 (1096)
. ++.|++||+.+++. +..+.+|.. .+.+++|+|++.+|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 7 99999999999887 788888877 89999999999998888766655 66654211
Q ss_pred ------------------------EEEEeec-----------CCCCCCccEEEEeCCC-C---EEEEEECCCcEEEEEc
Q 001343 619 ------------------------ILTSTDA-----------EGGLPNLPRLRFSKEG-N---LLAVTTADNGFKILAN 658 (1096)
Q Consensus 619 ------------------------~~~~~~~-----------~~~~~~v~~~~~s~~~-~---~l~~~~~dg~i~iwd~ 658 (1096)
....... ..|...|+++++.+.. . .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 0145589999976643 3 6999999999999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=309.10 Aligned_cols=281 Identities=15% Similarity=0.255 Sum_probs=242.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.+++|+||+++ +||+|. |++|+|||..+|+..... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999864 688874 999999999999876421 1567889999999999999999999
Q ss_pred CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeEEEEee
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~ 503 (1096)
.||.|+|||+.+++.++ .+.+|...+.++.++ +. .|++|+.|+.+++|| .....+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999988776 578999999998886 45 899999999999999 4466778899999999999997
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCe----eeEEeCCCCcEEEEEEcCCCCEEE-EEeeccCCCCeEEEEeCCCCeeeE
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRLF-SCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~l~-~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
+ ++.++++++.||.+++|+..+++. ......+...|.+++|+|++..++ +++. ..|+.|++||+.+++...
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 6 668999999999999999987653 346677888999999999776554 4432 238999999999999999
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEE--cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
.+..+. .+..+.|+++++.+++++ .|+.|++||+.+++.+..+.+|.. .|.+++|+|+|.+|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 988765 577899999999998876 789999999999999999988765 89999999999999999999999999
Q ss_pred EcCCC
Q 001343 657 ANAIG 661 (1096)
Q Consensus 657 d~~~~ 661 (1096)
|+.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 98765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=307.80 Aligned_cols=288 Identities=14% Similarity=0.230 Sum_probs=242.7
Q ss_pred cCCCc--eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 342 HQGST--VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 342 ~h~~~--V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
+|... +.+++|++ .. +++++.|+.|+|||+.+++.... ....|...|.+++|+|+++
T Consensus 89 ~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGS 147 (401)
T ss_dssp TCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSS
T ss_pred CCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCC
Confidence 45555 45566665 43 66677999999999999887642 1223889999999999999
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c-CCceEEEeeCCCCCe
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEGHEAPV 497 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~~~~~~~~v 497 (1096)
+|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. .|++|+.||.|++|| . .+..+..+.+|...|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 99999999999999999987666 577999999999994 45 899999999999999 4 577788999999999
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
.+++|++ ++.+|++|+.||.|++||+++......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+
T Consensus 221 ~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 221 CGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEE
T ss_pred eEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEE
Confidence 9999987 6689999999999999999999988888899999999999998765554331 112899999999999999
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEE--cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1096)
..+..+ . .+.+++|+|+++.+++++ .||.|++|++.+++.........+...|.+++|+|++.+|++++.||.|++
T Consensus 298 ~~~~~~-~-~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 298 NTVDAG-S-QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp EEEECS-S-CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred EEEeCC-C-cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 988643 3 789999999999999954 899999999999877666544444558999999999999999999999999
Q ss_pred EEcCCCc
Q 001343 656 LANAIGL 662 (1096)
Q Consensus 656 wd~~~~~ 662 (1096)
|++.++.
T Consensus 376 w~~~~~~ 382 (401)
T 4aez_A 376 WRVYDGD 382 (401)
T ss_dssp EECCC--
T ss_pred EECCCCc
Confidence 9998874
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=302.31 Aligned_cols=300 Identities=12% Similarity=0.159 Sum_probs=252.6
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 488999999999999999999999999999999999987766 5789999999999999999 89999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC-----CeEEEEEcCCCCe-----------eeEEeCCCC--cE
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGS-----------RVDYDAPGH--WC 541 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~i 541 (1096)
| .+++.+..+. +..+|.+++|++ ++.++++++.+ |.|++||+..... ...+..+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 9 8888888888 889999999977 66899999999 9999999986542 234444544 89
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|.. .+.+++|+|++.+|++++.||.|++||+.+++.+
T Consensus 179 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 99999999999999986 89999999998 788889998877 8999999999999999999999999999999999
Q ss_pred EEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCc
Q 001343 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~ 700 (1096)
..+... ..+..++|+|++.++++++.++.+.+|.....
T Consensus 254 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------------------------------- 291 (369)
T 3zwl_B 254 KKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSAN--------------------------------------- 291 (369)
T ss_dssp EEEECS---SCEEEEEECSSSSEEEEEECCC-------------------------------------------------
T ss_pred eeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecC---------------------------------------
Confidence 888733 37999999999999999999987777654322
Q ss_pred eeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEE
Q 001343 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1096)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 780 (1096)
.....+++|+.. ...... .+.+ |...|.+++|+|+++.|+
T Consensus 292 --------------------------------~~~~~i~~~d~~----~~~~~~-~~~~---~~~~v~~~~~s~~~~~l~ 331 (369)
T 3zwl_B 292 --------------------------------EGKFEARFYHKI----FEEEIG-RVQG---HFGPLNTVAISPQGTSYA 331 (369)
T ss_dssp -----------------------------------CEEEEEETT----TCCEEE-EEEC---CSSCEEEEEECTTSSEEE
T ss_pred --------------------------------CCcceeEEEecC----CCcchh-heec---ccCcEEEEEECCCCCEEE
Confidence 001356777765 233222 4455 899999999999999999
Q ss_pred EeecCCeEEEeeccC
Q 001343 781 ALGSNGVQKLWKWHR 795 (1096)
Q Consensus 781 ~~~~dg~v~vw~~~~ 795 (1096)
+++.||.|++|++..
T Consensus 332 s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 332 SGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEETTSEEEEEEECH
T ss_pred EEcCCCeEEEEECcc
Confidence 999999999999854
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=307.46 Aligned_cols=300 Identities=11% Similarity=0.118 Sum_probs=229.9
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCC-------CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSN-------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~d-------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
-..+|+|++|+|||+ +||+|+.+ +.|+||++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 456899999999998 79998754 35999999876543211110 00111367888999988775
Q ss_pred CCCCEEEEEE-----------CCCeEEEEEccCCCccccc------eeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 416 PDGNYVGVAF-----------TKHLIQLYSYAGSNDLRQH------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 416 pd~~~l~s~~-----------~dg~i~vwd~~~~~~~~~~------~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
++.+++|+ .|+.+++|++.+....... .....+...+.+++|+|||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 55666653 4778999998765432111 1123455679999999999954445666899999
Q ss_pred EEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE--eCCCCcEEEEEEcCCCCEEEE
Q 001343 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
||| .+++++..+. |...|.+++|+| +|.++++++.+ .+++|+..++...... ..|...|.+++|+|+++.+++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 999 8888888886 778899999977 77899888855 5666766666665433 346668999999999999999
Q ss_pred EeeccCCCCeEEEEeCCCCee----eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe-ecCCCCC
Q 001343 556 CGTSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-DAEGGLP 630 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 630 (1096)
++.+......+++|+...+.. ...+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++++..+ .+|..
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~-- 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF-- 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS--
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC--
Confidence 987443344788999876653 345667766 8999999999999999999999999999999998875 55654
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.|++++|+|||++||+++.|++|+||++..+
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=293.63 Aligned_cols=250 Identities=19% Similarity=0.285 Sum_probs=212.2
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~i 479 (1096)
+.+|...|.+++|+|+|++||+|+.|++|+|||+.++.. +...++.+|.+.|++++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 778999999999999999999999999999999975421 222368899999999999864 77 8999999999999
Q ss_pred EE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCC-----
Q 001343 480 WE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSAD----- 549 (1096)
Q Consensus 480 wd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~----- 549 (1096)
|| .+++ .+..+.+|...|.+++|+|..++.+|++++.||+|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 99 6653 567788999999999999865578999999999999999987642 4567788889999999997
Q ss_pred --------CCEEEEEeeccCCCCeEEEEeCCCCe----eeEEEcCcCccceEEEEEeCCC---CEEEEEEcCCeEEEEeC
Q 001343 550 --------GSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 550 --------~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~ 614 (1096)
+++|++++. |+.|++||+++++ ....+.+|.. .|.+++|+|++ .+|++++.|++|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 578999987 9999999998765 6678888887 89999999984 78999999999999999
Q ss_pred CCCe---EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 615 DNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 615 ~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
.+.. ....+....+...|.+++|+|++++|++++.|+.|++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8743 22233223344589999999999999999999999999975
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-32 Score=304.66 Aligned_cols=244 Identities=15% Similarity=0.133 Sum_probs=215.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCC--ccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
+..|...|.+++|+|++++|++|+.|+.|++||+.+++ .+. .+.+|...|++++|+|+++ +|++++.|+.|++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~v 78 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH---ELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYV 78 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE---EEECCSSCEEEEEEETTTT--EEEEEETTSCEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee---eecCCCCcccEEEEeCCCC--EEEEEcCCCeEEE
Confidence 45589999999999999999999999999999999875 343 5779999999999999999 8999999999999
Q ss_pred EE-cCCceEE--EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe----eeEEeCCCCcEEEEEEcCCCCE
Q 001343 480 WE-LSGRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 480 wd-~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~ 552 (1096)
|| .+++... .+..|...|.+++|++ ++.+|++++.||.|++||++.... ......|...|.+++|+|++++
T Consensus 79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 79 WTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred EECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 99 6766443 3467999999999977 668999999999999999998774 2233556779999999999999
Q ss_pred EEEEeeccCCCCeEEEEeC------------------CCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 553 LFSCGTSKDGDSFLVEWNE------------------SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
+++++. ++.|++||+ ..++.+..+.+|.. .+.+++|+|++++|++++.||.|++||+
T Consensus 157 l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 157 LAAGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEEEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEEEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 999987 999999995 46788888888877 8999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.+++.+..+..+.. .|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 232 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 232 DKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999987755 89999999999988887 999999999977
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=305.93 Aligned_cols=299 Identities=12% Similarity=0.138 Sum_probs=240.9
Q ss_pred eecccccCEEEEEEecCC-CcEEEEEEeCCCcEEEEE-cCCceEEEee--CCCCCeEEEEeeecCCCcEEEEEECCCeEE
Q 001343 446 QIDAHVGAVNDLAFAYPN-KLLCVVTCGDDKLIKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIK 521 (1096)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~-~~~~l~s~s~d~~i~iwd-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (1096)
.+.+|.+.|++++|+|++ + +|++|+.|+.|++|| .+++....+. +|...|.+++|+|. ++.+|++++.||.|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPT--TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRGATT 144 (383)
T ss_dssp EECCCSSCEEEEEECSSCTT--EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTTEEE
T ss_pred eccCCCCCEEEEEECCCCCC--EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCCEEE
Confidence 577899999999999999 6 899999999999999 7777776665 69999999999773 357999999999999
Q ss_pred EEEcCCCCeeeEEeCCC---CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC
Q 001343 522 AWLYDTMGSRVDYDAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1096)
Q Consensus 522 iwd~~~~~~~~~~~~~~---~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1096)
+||++. .....+..+. ..|.+++|+|+++++++++. ++.|++||+ +++.+..+.+|.. .+.+++|+|+++
T Consensus 145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~-~~~~~~~~~~h~~-~v~~~~~~~~~~ 217 (383)
T 3ei3_B 145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS----TGRLLLLGL-DGHEIFKEKLHKA-KVTHAEFNPRCD 217 (383)
T ss_dssp EEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEET----TSEEEEEET-TSCEEEEEECSSS-CEEEEEECSSCT
T ss_pred EEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECC----CCCEEEEEC-CCCEEEEeccCCC-cEEEEEECCCCC
Confidence 999985 4444444433 67999999999999999987 999999999 5788888998887 899999999998
Q ss_pred -EEEEEEcCCeEEEEeCCC----CeEEEEeecCCCCCCccEEEEeC-CCCEEEEEECCCcEEEEEcCCCccccccccCCC
Q 001343 599 -HFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPP 672 (1096)
Q Consensus 599 -~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 672 (1096)
++++++.|+.|++||+.+ +..+..+. + ...|.+++|+| ++.+|++++.|+.|++||+.++ .....+..+.
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~--~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~ 293 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMP-H--EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKPDQIIIHP 293 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-C--SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSCSEEEECC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEec-C--CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-cccccccccc
Confidence 999999999999999987 66666663 3 34899999999 9999999999999999999776 2222211110
Q ss_pred cccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCce
Q 001343 673 FEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQC 752 (1096)
Q Consensus 673 ~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~ 752 (1096)
..
T Consensus 294 ~~------------------------------------------------------------------------------ 295 (383)
T 3ei3_B 294 HR------------------------------------------------------------------------------ 295 (383)
T ss_dssp BC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCC
Q 001343 753 RLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 832 (1096)
Q Consensus 753 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~ 832 (1096)
..+ |...+. +.|+|+ .
T Consensus 296 ----~~~---~~~~~~-~~~~p~--------------------------------------------------------~ 311 (383)
T 3ei3_B 296 ----QFQ---HLTPIK-ATWHPM--------------------------------------------------------Y 311 (383)
T ss_dssp ----CCT---TSCCCC-CEECSS--------------------------------------------------------S
T ss_pred ----ccc---cccceE-EeccCC--------------------------------------------------------C
Confidence 000 222221 133332 3
Q ss_pred CeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecC--CCCCeeEEEEecCCCcEEEEeeCCCeEEEEeecc
Q 001343 833 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~--h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~ 904 (1096)
.+..++|+|||++ +++ ||.|+|||+.+++++..+.+ |...+..++|+| ++++|++|+ ||.|++||+++
T Consensus 312 ~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 312 DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 3456788899988 666 79999999999999999986 457788889999 899999997 99999999874
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-32 Score=307.37 Aligned_cols=249 Identities=9% Similarity=0.078 Sum_probs=217.7
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCc---cccceeecccccCEEEEEEecC----C---CcEEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYP----N---KLLCVVT 470 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~l~~h~~~v~~l~~s~d----~---~~~~l~s 470 (1096)
.+.+|.+.|++++|+| ++|++|+.||.|++||+.+++. ......+.+|...|++++|+|+ + + +|++
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~s 86 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVAT 86 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEEE
Confidence 4789999999999999 8999999999999999998761 1122357799999999999999 8 8 8999
Q ss_pred EeCCCcEEEEE-cCCce-----EEEeeCC-----CCCeEEEEeeec--CCCcE-EEEEECCCeEEEEEcCC------CCe
Q 001343 471 CGDDKLIKVWE-LSGRK-----LFNFEGH-----EAPVYSICPHHK--ENIQF-IFSTAIDGKIKAWLYDT------MGS 530 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~~~~-----~~~~~~~-----~~~v~~~~~~~~--~~~~~-l~s~~~dg~i~iwd~~~------~~~ 530 (1096)
++.|+.|++|| .+++. +..+.+| ...|.+++|++. +++.+ |++++.||.|++||+++ ...
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999999 77776 8888888 589999999821 36678 99999999999999998 555
Q ss_pred ee-----EE-------eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC---c---CccceEEEE
Q 001343 531 RV-----DY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RKKSNGVVQ 592 (1096)
Q Consensus 531 ~~-----~~-------~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~---~~~~i~~~~ 592 (1096)
.. .+ ..+...|.+++|+|++ .+++++. ++.|++||+++++.+..+.. | .. .+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i~ 240 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVK 240 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEE
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccCC-ccceEE
Confidence 55 55 4477789999999999 8888886 99999999999999999998 7 65 899999
Q ss_pred EeCCCCEEEEEEcC---CeEEEEeCCCCeEEEEeec-------------CCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 593 FDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDA-------------EGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 593 ~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
|+|++.+|++++.| |.|++||+.+++.+..+.. +.. .|.+++|+|++++|++++.||.|++|
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS--WVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS--CEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC--cEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 99999999999999 9999999999999988876 544 89999999999999999999999999
Q ss_pred EcCCC
Q 001343 657 ANAIG 661 (1096)
Q Consensus 657 d~~~~ 661 (1096)
|+.++
T Consensus 319 d~~~~ 323 (397)
T 1sq9_A 319 DVKTK 323 (397)
T ss_dssp ETTTT
T ss_pred EcCCC
Confidence 99877
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=307.84 Aligned_cols=299 Identities=16% Similarity=0.196 Sum_probs=241.7
Q ss_pred cCCCceEEEEEcC-CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCC
Q 001343 342 HQGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1096)
Q Consensus 342 ~h~~~V~~v~fsp-~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~ 419 (1096)
.|.+.|++++|+| +++ +||+|+.||.|+|||+.+++......... . .........+|...|.+++|+| ++.
T Consensus 41 ~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKA--V----CSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp CCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECE--E----EEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred ccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccc--c----ccccccccccCCCcEEEEEEccCCCc
Confidence 4999999999999 998 79999999999999999887654211000 0 0000111356999999999999 788
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec---CCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~---d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
+|++++.||.|++||+.+++.... + .+...+.++.|++ ++. ++++++.|+.|++|| .+++.+..+.+|..
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 187 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADV---F-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSHILQGHRQ 187 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEE---E-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCEEECCCCS
T ss_pred EEEEEeCCCeEEEeeCCCCcccee---c-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceeeeecCCCC
Confidence 999999999999999999876652 2 3788899999998 445 799999999999999 88999999999999
Q ss_pred CeEEEEeeecCCCc-EEEEEECCCeEEEEEcCCCCee-eEE---------------eCCCCcEEEEEEcCCCCEEEEEee
Q 001343 496 PVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSR-VDY---------------DAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~-~~~---------------~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
.|.+++|+|. +. ++++++.||.|++||++..... ..+ ..+...|.+++|+|+++++++++.
T Consensus 188 ~v~~~~~~~~--~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 188 EILAVSWSPR--YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp CEEEEEECSS--CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred cEEEEEECCC--CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 9999999874 45 6899999999999999876532 222 456778999999999999999987
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCc----cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
++.|++||+.+++....+..+.. ...........+..+++++.++.|++||+.+++.+..+..+.. .|.+
T Consensus 266 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~v~~ 339 (408)
T 4a11_B 266 ----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK--TVDC 339 (408)
T ss_dssp ----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS--CEEE
T ss_pred ----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC--eEEE
Confidence 99999999999877655443211 1122222234456777788899999999999999999987765 8999
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++|+|++++|++++.||.|++|++.++
T Consensus 340 ~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 340 CVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 999999999999999999999999877
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=330.33 Aligned_cols=248 Identities=20% Similarity=0.272 Sum_probs=215.9
Q ss_pred ccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCcc--ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
.+.+|.+.|++++|+|+ +++|++|+.|++|++||+.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 47899999999999986 479999999999999999865432 12235789999999999999999 89999999999
Q ss_pred EEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE---eCCCCcEEEEEEcCCC--C
Q 001343 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADG--S 551 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~--~ 551 (1096)
++|| .+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||.......... ..|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999 88999999999999999999977 6689999999999999997644332222 3466789999999987 5
Q ss_pred EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCC
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
.+++++. ++.|++||+++++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 533 ~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~ 604 (694)
T 3dm0_A 533 TIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV 604 (694)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC
T ss_pred eEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc
Confidence 7888886 99999999999999999999987 8999999999999999999999999999999988777643 37
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|.+++|+|++.++++++. +.|++||+.++
T Consensus 605 v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~ 633 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAATE-HGIKIWDLESK 633 (694)
T ss_dssp EEEEEECSSSSEEEEEET-TEEEEEETTTT
T ss_pred EEEEEEcCCCcEEEEEcC-CCEEEEECCCC
Confidence 999999999998887764 56999999877
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-31 Score=290.01 Aligned_cols=281 Identities=15% Similarity=0.257 Sum_probs=236.8
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~ 426 (1096)
.++|+||+++ +||+| .|++|+|||+.+++.+... .+.+|...|.+++|+|++++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg-~D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVA-LDNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEE-ETTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEE-eCCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999986 68887 5999999999999876531 15678899999999999999999999
Q ss_pred CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeEEEEeee
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHH 504 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~ 504 (1096)
||+|++||+++++.+. .+.+|...+.++.+. +. .+++++.++.+++|+ .....+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999988776 577899998877665 55 899999999999999 44566788899999999999966
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCe----eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
++.++++++.||+|++||+++++. ......+...|.++++++++..++.... ...++.|++||..........
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 668999999999999999987654 2355567778999999998776553321 123789999999988877766
Q ss_pred cCcCccceEEEEEeCCCCEEEEEE--cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.... .+..+.|++++..+++++ .|+.|++||+.+++.+..+.+|.. .|++++|+|++++|++|+.||+|++||+
T Consensus 238 ~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5443 578899999999888765 799999999999999999988765 8999999999999999999999999998
Q ss_pred CCC
Q 001343 659 AIG 661 (1096)
Q Consensus 659 ~~~ 661 (1096)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=316.33 Aligned_cols=299 Identities=14% Similarity=0.221 Sum_probs=234.3
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC------------C
Q 001343 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP------------I 407 (1096)
Q Consensus 340 ~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~ 407 (1096)
.+.|.+.|+|++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. .
T Consensus 24 ~~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~ 94 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEE 94 (447)
T ss_dssp CCCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECC
T ss_pred cccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccC
Confidence 355788999999999999 7999999999999999887631100000 000112367887 8
Q ss_pred CEEEEEEcCCC--CEEEEEECCCeEEEEEccCCCcccc------------------------------------c-eeec
Q 001343 408 SVSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLRQ------------------------------------H-SQID 448 (1096)
Q Consensus 408 ~V~~l~~spd~--~~l~s~~~dg~i~vwd~~~~~~~~~------------------------------------~-~~l~ 448 (1096)
.|.+++|+|++ .+|++++.|+.|++||+.+++.... . ....
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 89999999998 8999999999999999986433100 0 1136
Q ss_pred ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c-CCceEE-------EeeCCCCCeEEEEeeecCCC-cEEEEEECCC
Q 001343 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLF-------NFEGHEAPVYSICPHHKENI-QFIFSTAIDG 518 (1096)
Q Consensus 449 ~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg 518 (1096)
+|...|++++|+|+++ +|++| .|+.|++|| . .++.+. .+.+|...|.+++|+| ++ .+|++|+.||
T Consensus 175 ~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg 249 (447)
T 3dw8_B 175 AHTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKG 249 (447)
T ss_dssp CCSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTS
T ss_pred CCCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCC
Confidence 8999999999999999 89998 799999999 4 344444 3568999999999987 44 7999999999
Q ss_pred eEEEEEcCCCCe----eeEEeCCCC------------cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC-CeeeEEEc
Q 001343 519 KIKAWLYDTMGS----RVDYDAPGH------------WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYA 581 (1096)
Q Consensus 519 ~i~iwd~~~~~~----~~~~~~~~~------------~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~ 581 (1096)
.|++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+++ ++.+..+.
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~ 324 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQ 324 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEE
T ss_pred eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceee
Confidence 999999998876 667777765 899999999999999886 58999999997 88888888
Q ss_pred CcCccc--------------eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC---------------------
Q 001343 582 GFRKKS--------------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE--------------------- 626 (1096)
Q Consensus 582 ~~~~~~--------------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------------- 626 (1096)
+|.... +..++|+|++.+|++|+.||.|++||+.+++.+......
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRK 404 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCC
T ss_pred ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcc
Confidence 875311 223899999999999999999999999998876422111
Q ss_pred ---------CCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 627 ---------GGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 627 ---------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.....|..++|+|++++||+++.++ +.+|..
T Consensus 405 ~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 405 KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1223688999999999999998875 777764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=290.96 Aligned_cols=248 Identities=15% Similarity=0.198 Sum_probs=207.3
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCC--CeeecccceeecccccCccccccccccCCCCEEEEEEcCC-
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 417 (1096)
.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+. .+.+|.+.|.+++|+|+
T Consensus 6 ~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~ 65 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK 65 (297)
T ss_dssp CSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGG
T ss_pred cCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCC
Confidence 35999999999999999 6999999999999999754 2222 37899999999999874
Q ss_pred -CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEEEEE-cCCc--eEEEee
Q 001343 418 -GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGR--KLFNFE 491 (1096)
Q Consensus 418 -~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~~--~~~~~~ 491 (1096)
+++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++|| ..+. ....+.
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 142 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIID 142 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEE
T ss_pred cCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeee
Confidence 899999999999999999887422 22257789999999999998 77 899999999999999 5543 246778
Q ss_pred CCCCCeEEEEeeecC-----------CCcEEEEEECCCeEEEEEcCCCC----eeeEEeCCCCcEEEEEEcCCC---CEE
Q 001343 492 GHEAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSADG---SRL 553 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~~---~~l 553 (1096)
+|...|.+++|+|.. ++.+|++|+.||+|++||+++.. ....+..|...|.+++|+|++ .+|
T Consensus 143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYM 222 (297)
T ss_dssp CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEE
Confidence 999999999998752 25699999999999999998766 445677899999999999995 789
Q ss_pred EEEeeccCCCCeEEEEeCCCCe--e-eEEE--cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 554 FSCGTSKDGDSFLVEWNESEGT--I-KRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~--~-~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
++++. |+.|++||+.++. . ...+ ..+.. .+.+++|+|++++|++++.|+.|++|+...
T Consensus 223 as~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 223 ASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 99887 9999999987643 1 2233 34444 789999999999999999999999999863
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=313.16 Aligned_cols=222 Identities=9% Similarity=0.023 Sum_probs=181.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 484 (1096)
-..+|.+++|||||+++|+++.|++|+ |...++ .+.+|...|++++|+|+| .++.+.+|+.++
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCCC
Confidence 457899999999999999999999999 755443 346899999999999998 377777777444
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC-----cEEEEEEcCCCCEEEEEeec
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~i~~l~~s~~~~~l~~~~~~ 559 (1096)
..+..+ .|...|.+++|+| +|.+|++++.||.|++||.+. ....+. |.. .+.+++|||||++|++++.
T Consensus 77 ~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~- 149 (588)
T 2j04_A 77 NGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE- 149 (588)
T ss_dssp SCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET-
T ss_pred ceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC-
Confidence 444444 4588999999977 778999999999999999544 444444 443 5999999999999999997
Q ss_pred cCCCCeEEEEeCCCCe-------eeEEE----cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE---EEEee-
Q 001343 560 KDGDSFLVEWNESEGT-------IKRTY----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI---LTSTD- 624 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~-------~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~- 624 (1096)
|+.|++||+.++. .+.++ .+|.. .|.+++|+|+| +++++.|+.|++|++.++.. ..++.
T Consensus 150 ---DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~-~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 150 ---DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD-WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp ---TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred ---CCEEEEEECCCCccccccceeeeeeecccccccc-cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 9999999999885 35776 55554 89999999998 88999999999999988773 34553
Q ss_pred cCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+. ..|.+++|+ |+.||+++ ++.|++||+.++
T Consensus 224 ~h~--~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 224 ASR--RKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp CCS--SCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred ccc--CcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 443 489999999 68999887 699999999776
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=306.05 Aligned_cols=272 Identities=19% Similarity=0.299 Sum_probs=239.1
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+|...|+|++| +++ ++++|+.||.|++||+.+++.+.. +.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEE
Confidence 37788999988 677 799999999999999999887653 7789999999999 78999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE---EEeeCCCCCe
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPV 497 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~---~~~~~~~~~v 497 (1096)
++|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.||.|++|| .++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999988766 5778999999999974 4 799999999999999 666655 6788999999
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
.++++ ++.++++|+.||.|++||+++++....+..|...|.++.+ +++++++++. ++.|++||+++++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEE
Confidence 99998 4579999999999999999999999999999999999998 4679999987 999999999999999
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe---------EEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
..+.+|.. .+.+++| ++.++++|+.||.|++||+.++. .+..+..|.. .|.+++| ++.+|++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEe
Confidence 99999887 7888888 78899999999999999997665 6777776655 8999999 778999999
Q ss_pred CCCcEEEEEcCCC
Q 001343 649 ADNGFKILANAIG 661 (1096)
Q Consensus 649 ~dg~i~iwd~~~~ 661 (1096)
.||.|++||+.++
T Consensus 403 ~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 403 HDDTILIWDFLND 415 (435)
T ss_dssp SSSEEEEEC----
T ss_pred CCCEEEEEECCCC
Confidence 9999999999776
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=299.91 Aligned_cols=249 Identities=15% Similarity=0.236 Sum_probs=212.1
Q ss_pred ccccCCCCEEEEEEcCC----CCEEEEEECCCeEEEEEccCCCccccceeec--ccccCEEEEEEecC----CCcEEEEE
Q 001343 401 IFKDVPISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYP----NKLLCVVT 470 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~--~h~~~v~~l~~s~d----~~~~~l~s 470 (1096)
+..+|.+.|.+++|+|+ ...+++++.++.|++||+.+++.+..+.... .|...|++++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 45689999999999984 4566666677799999999887765433222 36788999999999 55 8999
Q ss_pred EeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE---eCCCCcEEEEEE
Q 001343 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLY 546 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~ 546 (1096)
|+.||.|++|| .+++.+..+.+|..+|.+++|+|. ++.+|++++.||.|++||+++++....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 99999999999 889999999999999999999773 4579999999999999999998888877 678889999999
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC----------------------------cCccceEEEEEeCCCC
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG----------------------------FRKKSNGVVQFDTTQN 598 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~----------------------------~~~~~i~~~~~~~~~~ 598 (1096)
+|+++++++++. ++.|++||+++++....+.. |.. .+.+++|+ ++
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~ 242 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--GD 242 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--TT
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--CC
Confidence 999999999987 99999999998765544332 555 78889998 77
Q ss_pred EEEEEEcCCeEEEEeCCCCeE--------------EEEeecCCCCCCccEEEEeCC--CCEEEEEECCCcEEEEEcCCC
Q 001343 599 HFLAVGEDSQIKFWDMDNVNI--------------LTSTDAEGGLPNLPRLRFSKE--GNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++++++.||.|++||+.++.. +..+..+.. .|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 999999999999999987643 666666654 8999999999 999999999999999998765
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=297.75 Aligned_cols=310 Identities=13% Similarity=0.172 Sum_probs=242.6
Q ss_pred cccccCCCCEEEEEEcCCCCEEE-EEEC---CCeEEEEEccCCCccccceeecccccCEEEEEEecC---CCcEEEEEEe
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVG-VAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG 472 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~-s~~~---dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d---~~~~~l~s~s 472 (1096)
.++.+|...|.+++|+|++..++ +|+. ||.|++||+.+++.... ...+|...|.+++|+|+ +. +|++|+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 34678999999999999997555 5555 89999999998775432 23379999999999999 57 899999
Q ss_pred CCCcEEEEE-cCCc-eEEEeeCCCCCeEEEEeee----cCCCcEEEEEECCCeEEEEEcCCCC-eeeEEeCCCC----cE
Q 001343 473 DDKLIKVWE-LSGR-KLFNFEGHEAPVYSICPHH----KENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGH----WC 541 (1096)
Q Consensus 473 ~d~~i~iwd-~~~~-~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~i 541 (1096)
.||.|++|| .+++ .+..+.+|...|.++.|.+ .+++.+|++++.||.|++||+++.. ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 999999999 7777 8899999999999997753 4577899999999999999999887 5666655443 78
Q ss_pred EEEE----EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC---CCCEEEEEEcCCeEEEEeC
Q 001343 542 TTML----YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT---TQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 542 ~~l~----~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~ 614 (1096)
.+++ |+++++++++++. ++.|++||+++++.... ..+.. .+.+++|+| ++..+++++.||.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 8888 7899999999986 89999999999987554 44444 799999999 8999999999999999999
Q ss_pred CCCeEEEEee-----cCCCCCCccEEEEeCCCC-EEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecC
Q 001343 615 DNVNILTSTD-----AEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1096)
Q Consensus 615 ~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 688 (1096)
.+++....+. .+. ..|.+++|+|++. ++++++.||.|++||+.++.... .. .++
T Consensus 242 ~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-----------------~~~ 301 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHK--STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRS-KK-----------------DSE 301 (357)
T ss_dssp EEEETTTEEEEEEEECCS--SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC---C-----------------CTT
T ss_pred cCCCcccceeeeccCCCc--CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccc-cc-----------------cCC
Confidence 8766544333 444 4899999999998 89999999999999997662111 00 001
Q ss_pred CCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEE
Q 001343 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1096)
Q Consensus 689 g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1096)
|... .. .+.. .....+.+ |...|.
T Consensus 302 g~~~-------------------------------------~~---~~~~-------------~~~~~~~~---~~~~v~ 325 (357)
T 3i2n_A 302 GIEM-------------------------------------GV---AGSV-------------SLLQNVTL---STQPIS 325 (357)
T ss_dssp SCCC-------------------------------------CC---CCEE-------------EEEEEEEC---CSSCEE
T ss_pred CCcc-------------------------------------cc---cccc-------------ceeecccc---CCCCee
Confidence 1000 00 0110 11223445 889999
Q ss_pred EEEEecCCceEE-EeecCCeEEEeeccC
Q 001343 769 RLLYTNSAVGLL-ALGSNGVQKLWKWHR 795 (1096)
Q Consensus 769 ~l~~s~~~~~l~-~~~~dg~v~vw~~~~ 795 (1096)
+++|+|+++.++ +++.|+.|++|++..
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 999999999998 788899999999753
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=311.59 Aligned_cols=243 Identities=14% Similarity=0.099 Sum_probs=202.7
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC--CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
+..|.+.|.+++|+|++++||+|+.|+.|++||+.++ +... .+.+|.+.|++++|+|+++ +|++++.|++|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3446789999999999999999999999999999987 4444 5789999999999999999 8999999999999
Q ss_pred EE-cCCc---eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe---eeEEeC-CCCcEEEEEEcCCCC
Q 001343 480 WE-LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDA-PGHWCTTMLYSADGS 551 (1096)
Q Consensus 480 wd-~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~i~~l~~s~~~~ 551 (1096)
|| .+++ ....+.+|...|.+++|+| ++.+|++++.||.|++||++..+. ...+.. |...|.+++|+|+++
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 99 6665 6778889999999999977 668999999999999999998763 556666 888999999999999
Q ss_pred EEEEEeeccCCCCeEEEEeCC------------------CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEe
Q 001343 552 RLFSCGTSKDGDSFLVEWNES------------------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1096)
++++++. ++.|++||+. .++.+..+ +|.. .+.+++|+|++++|++++.||.|++||
T Consensus 160 ~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 160 LLAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999987 8999999985 35566666 6665 899999999999999999999999999
Q ss_pred CCCCeE----EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 614 MDNVNI----LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 614 ~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
+.+++. +..+..+.. .|.+++|+|++++|++++.++.+ +|+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp ECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred CCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 999877 666666654 89999999999999998776655 666543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=299.63 Aligned_cols=303 Identities=10% Similarity=0.094 Sum_probs=225.5
Q ss_pred CccEEEEeCCCCEEEEEECCC-------cEEEEEcCCCccccc---------cccCCCcccccCcceeEEeecCCCeEEe
Q 001343 631 NLPRLRFSKEGNLLAVTTADN-------GFKILANAIGLRSLR---------AVENPPFEALRTPIESVALKVSASSAVS 694 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~g~~lv~ 694 (1096)
+|++++|+||+++|++|+.+. .|++|++..+..... .+..+. ..+. ++++++..+++
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~-----~~v~--s~~~~~~~~~~ 88 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDND-----DSPT--AIDASKGIILV 88 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTS-----CCCC--EEEEETTEEEE
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCC-----CceE--EEEeCCCEEEE
Confidence 799999999999999998643 499999876532111 112221 1233 44566667655
Q ss_pred cCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCce-EEEEcCCCCCCcccEEEEEEe
Q 001343 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQC-RLVTMPESTDTSSKVVRLLYT 773 (1096)
Q Consensus 695 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s 773 (1096)
+... .+..+++++.|+.+++|++......... ....+.....+...+++++||
T Consensus 89 g~~~--------------------------~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS 142 (365)
T 4h5i_A 89 GCNE--------------------------NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS 142 (365)
T ss_dssp ECCC--------------------------CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC
T ss_pred EECC--------------------------CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc
Confidence 5432 3446788899999999998742111111 111111112255679999999
Q ss_pred cCCceEEEee--cCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC
Q 001343 774 NSAVGLLALG--SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (1096)
Q Consensus 774 ~~~~~l~~~~--~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d 851 (1096)
|||+++++++ .|++|++|++. +++++. .+. |...|.+++|+|||++|+++++
T Consensus 143 pDg~~la~as~~~d~~i~iwd~~----------------------~~~~~~-~~~---~~~~V~~v~fspdg~~l~s~s~ 196 (365)
T 4h5i_A 143 REGTVAAIASSKVPAIMRIIDPS----------------------DLTEKF-EIE---TRGEVKDLHFSTDGKVVAYITG 196 (365)
T ss_dssp TTSSCEEEEESCSSCEEEEEETT----------------------TTEEEE-EEE---CSSCCCEEEECTTSSEEEEECS
T ss_pred CCCCEEEEEECCCCCEEEEeECC----------------------CCcEEE-EeC---CCCceEEEEEccCCceEEeccc
Confidence 9999876544 47899999863 233322 222 6778999999999999999998
Q ss_pred CeEEEEEcccceEEE--eecCCCCCeeEEEEecCCCcEEEEeeCCC----eEEEEeeccceeeeeeccccccccceeeec
Q 001343 852 GKISLFNMMTFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGTEDS----TIHIYNVRVDELCVWSIDTWEKRKSVTIHI 925 (1096)
Q Consensus 852 g~v~iwd~~~~~~~~--~~~~h~~~i~~l~~s~~d~~~l~s~~~dg----~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~ 925 (1096)
+.+.+|+..+++.+. ....|...|.+++|+| +++++++++.|+ .+++|++..... .......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~-----------~~~~~~~ 264 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNT-----------SVLRSKQ 264 (365)
T ss_dssp SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEE-----------EEEEEEE
T ss_pred eeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeeccccccee-----------cceeeee
Confidence 888888888877654 3557888999999999 999999999887 688888876650 0112334
Q ss_pred CCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEec
Q 001343 926 PAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1004 (1096)
Q Consensus 926 ~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 1004 (1096)
+.+|.. .|++++|||||++||+ +.|++|+|||+.+++++..+..+| ...|++++|||||++||+|+.|++|+|||+
T Consensus 265 ~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 265 VTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp EESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred ecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 556665 8999999999999999 789999999999999998876555 999999999999999999999999999999
Q ss_pred CCC
Q 001343 1005 DTL 1007 (1096)
Q Consensus 1005 ~~~ 1007 (1096)
...
T Consensus 342 p~~ 344 (365)
T 4h5i_A 342 PLN 344 (365)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-31 Score=293.36 Aligned_cols=278 Identities=10% Similarity=0.116 Sum_probs=238.6
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC-E
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-Y 420 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~ 420 (1096)
.|.+.|++++|+|+++ +|++|+.||.|+|||+.+++.... ...+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcE
Confidence 4999999999999999 699999999999999988762110 011457999999999999999 9
Q ss_pred EEEEECCCeEEEEEc-cCCCccccceeecc--cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC---------CceE
Q 001343 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS---------GRKL 487 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~-~~~~~~~~~~~l~~--h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~---------~~~~ 487 (1096)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. .|++++.|+.|++|| .+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 87654 25778 999999999999 77 899999999999999 66 6667
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCe--eeEEeCCCCcEEEEEEcC-CCCEEEEEeeccCCC
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGD 563 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~ 563 (1096)
..+. |...|.+++|++ ++ +++++.||.|++||++. ... ......+...+.+++|+| +++++++++. +
T Consensus 145 ~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----D 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----T
T ss_pred eEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----C
Confidence 6776 889999999975 33 99999999999999998 543 334456677899999999 9999999987 9
Q ss_pred CeEEEEeCCCC------eeeEEEcCcCc--------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC-CC
Q 001343 564 SFLVEWNESEG------TIKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GG 628 (1096)
Q Consensus 564 ~~i~iwd~~~~------~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~ 628 (1096)
+.+++|++... +....+..|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~ 295 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED 295 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC
Confidence 99999999887 77888887743 27899999999999999999999999999999999888776 54
Q ss_pred CCCccEEEEeCCCCEEEEEECCCc-EEEE
Q 001343 629 LPNLPRLRFSKEGNLLAVTTADNG-FKIL 656 (1096)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~dg~-i~iw 656 (1096)
.|.+++ |++.+|++++.||. .+.|
T Consensus 296 --~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 296 --SVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp --EEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred --CceEec--CCCCeEEEEecCCcccccc
Confidence 889998 99999999999997 4443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-30 Score=285.01 Aligned_cols=239 Identities=15% Similarity=0.226 Sum_probs=212.1
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|.+.|.+++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 48899999999999 999999999999999999998876555 5678999999999999999 89999999999999
Q ss_pred E-cC---CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC-CCCEEEE
Q 001343 481 E-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLFS 555 (1096)
Q Consensus 481 d-~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~ 555 (1096)
+ .. ++.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.+++++| +++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9 43 3567888999999999998 346999999999999999 6667778888999999999988 8999999
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
++. ++.|++|| .++....+.......+.+++|+|++. +++++.||.|++||+.+++.+..+..+.. .|.++
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~ 231 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCI 231 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eEEEE
Confidence 987 99999999 56777788874444899999999987 99999999999999999999999987765 89999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+|+|++ .+++++.||.|++||+.++
T Consensus 232 ~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 232 KLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEecCC-CEEEEecCCEEEEEECCCC
Confidence 999999 5889999999999998665
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=298.97 Aligned_cols=327 Identities=13% Similarity=0.142 Sum_probs=252.9
Q ss_pred CCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-------------CCCC
Q 001343 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------------APGH 539 (1096)
Q Consensus 474 d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~ 539 (1096)
++.+++|+ ..++....+.+|.++|++++|+|. ++.+|++|+.||.|++||+.+......+. .|..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 45678888 777888889999999999999762 45799999999999999999876655443 4788
Q ss_pred cEEEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC---CCEEEEEEcCCeEEEEeCC
Q 001343 540 WCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 540 ~i~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~ 615 (1096)
.|.+++|+| ++.++++++. ++.|++||+.+++....+... . .+..+.+.+. +.++++++.||.|++||+.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSF----DKTLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp CEEEEEECTTCTTCEEEEET----TSEEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred cEEEEEEccCCCcEEEEEeC----CCeEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 999999999 7788999886 999999999999998888743 3 6788888884 4599999999999999999
Q ss_pred CCeEEEEeecCCCCCCccEEEEeCCCC-EEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEe
Q 001343 616 NVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1096)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~ 694 (1096)
+++.+..+..+.. .|.+++|+|++. ++++++.||.|++||+.++......+..+.....
T Consensus 175 ~~~~~~~~~~~~~--~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------------ 234 (408)
T 4a11_B 175 SGSCSHILQGHRQ--EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS------------------ 234 (408)
T ss_dssp SSCCCEEECCCCS--CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC------------------
T ss_pred CcceeeeecCCCC--cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc------------------
Confidence 9998888887655 899999999998 6999999999999999877433333322211000
Q ss_pred cCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEec
Q 001343 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1096)
Q Consensus 695 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1096)
..+.. ...+ |...|.+++|+|
T Consensus 235 -----------------------------------------~~~~~---------------~~~~---~~~~v~~~~~~~ 255 (408)
T 4a11_B 235 -----------------------------------------QAVES---------------ANTA---HNGKVNGLCFTS 255 (408)
T ss_dssp -----------------------------------------CCTTT---------------SSCS---CSSCEEEEEECT
T ss_pred -----------------------------------------eeecc---------------cccc---ccCceeEEEEcC
Confidence 00000 1122 888999999999
Q ss_pred CCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeE
Q 001343 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKI 854 (1096)
Q Consensus 775 ~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v 854 (1096)
++.++++++.||.+++|++........ ..+.... . ..............+.+++++.++.|
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLV--------------NYGKVCN---N--SKKGLKFTVSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCC--------------CCCCCCC---C--CSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred CCCEEEEecCCCeEEEEECCCCcccee--------------ccccccc---c--ccccceeEEecCCCceEEEEecCCEE
Confidence 999999999999999999865321000 0000000 0 01122223333445566666668999
Q ss_pred EEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccce
Q 001343 855 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 855 ~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~ 906 (1096)
++||+.+++.+..+.+|...|++++|+| ++++|++++.||.|++|++.+++
T Consensus 317 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 317 AVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC--
T ss_pred EEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCC
Confidence 9999999999999999999999999999 89999999999999999999877
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=311.05 Aligned_cols=208 Identities=13% Similarity=0.135 Sum_probs=171.3
Q ss_pred eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEE
Q 001343 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (1096)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 522 (1096)
...+|...|++++|+|.+.. +||+|+.||+|+||| ..++ ....+.+|.+.|++++|+|. ++.+|++|+.||+|++
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~-~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPS-TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGTTRL 191 (435)
T ss_dssp EEEECSSCEEEEEECSSCTT-CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSCEEE
T ss_pred cCCCCCCCEEEEEEeCCCCC-EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCEEEE
Confidence 45678999999999995443 799999999999999 5554 34556789999999999874 4579999999999999
Q ss_pred EEcCCCCeeeEEeCC--CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC-E
Q 001343 523 WLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-H 599 (1096)
Q Consensus 523 wd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 599 (1096)
||+++.........+ ...+.+++|+|++++|++++. ++.|++||++ ++.+..+.+|.. .|.+++|+|++. +
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~----dg~i~~wd~~-~~~~~~~~~h~~-~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN----VGNVILLNMD-GKELWNLRMHKK-KVTHVALNPCCDWF 265 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS----SSBEEEEESS-SCBCCCSBCCSS-CEEEEEECTTCSSE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC----CCcEeeeccC-cceeEEEecccc-eEEeeeecCCCceE
Confidence 999865544433333 336789999999999999987 9999999986 456677888877 899999999876 6
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEe-ecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 600 FLAVGEDSQIKFWDMDNVNILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++++.|+.|++||+++.+....+ ....+...|++++|+|+|.+|++++.||.|++||+.++
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 788999999999999886654333 22234458999999999999999999999999999887
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-30 Score=293.02 Aligned_cols=289 Identities=17% Similarity=0.239 Sum_probs=240.3
Q ss_pred CcceEEeec-CCCceEEEEEcCC---CCcEEEEEeCCCeEEEEecCC-CCeeecccceeecccccCccccccccccCCCC
Q 001343 334 PRTVAVSLH-QGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (1096)
Q Consensus 334 ~~~~~~~l~-h~~~V~~v~fsp~---g~~llasg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (1096)
+...+..+. |.+.|+|++|+|+ |+ +|++|+.||.|+|||+.+ +..+. ..+.+|...
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~ 88 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMHTGP 88 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEE------------------EEEEECSSC
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeE------------------EEeccccCC
Confidence 445566665 9999999999999 57 799999999999999987 44431 126779999
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEE--ecCCCcEEEEEEeCCCcEEEEE-cCCc
Q 001343 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF--AYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~--s~d~~~~~l~s~s~d~~i~iwd-~~~~ 485 (1096)
|.+++|+|++++|++|+.||.|++||+.+++... +.+|...|++++| ++++. +|++++.|+.|++|| .+++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 9999999999999999999999999999887554 5679999999999 88888 899999999999999 8889
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCCcEEEEEEcCCCCE----EEEEeec
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSR----LFSCGTS 559 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~----l~~~~~~ 559 (1096)
.+..+..+. .+.++.+.+ ..+++++.++.+++|+++......... .....+.++.+.++... +++++.
T Consensus 163 ~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI- 236 (368)
T ss_dssp CSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET-
T ss_pred EEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC-
Confidence 888888765 566666542 478999999999999998776554332 23345666666665544 888876
Q ss_pred cCCCCeEEEEeCCCC---eeeEEEcCcCcc-----------ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec
Q 001343 560 KDGDSFLVEWNESEG---TIKRTYAGFRKK-----------SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~-----------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
++.|++||+... ..+..+.+|... .+.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 237 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 237 ---EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp ---TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 999999999987 567778777653 589999999999999999999999999999999998887
Q ss_pred CCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
+.. .|.+++|+|++.+|++++.|+..+.|++
T Consensus 314 ~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 314 LDQ--PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CSS--CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CCC--CceEEEECCCCCeEEEEecccccccccc
Confidence 655 8999999999999999999886555544
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-31 Score=301.37 Aligned_cols=295 Identities=13% Similarity=0.159 Sum_probs=240.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVA 424 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~ 424 (1096)
...+++++|+...++++|+.||.|+||++.+...... ....+.+|.+.|.+++|+| ++++|++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 4557899999875666788999999999966433211 1123788999999999999 99999999
Q ss_pred ECCCeEEEEEccCCCcc----ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe--eCCCCCe
Q 001343 425 FTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--EGHEAPV 497 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~----~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~--~~~~~~v 497 (1096)
+.||.|++||+.++... .....+.+|...|++++|+|++.. +|++++.|+.|++|| .+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987432 223367899999999999999843 899999999999999 889999999 8899999
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-eCCCCc-EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
.+++|+| ++.+|++++.||.|++||+++++....+ ..|... +.+++|+|++++++++. +...++.|++||+.+++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CTTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cCCCCceEEEEcCcccc
Confidence 9999987 6689999999999999999998888877 566664 89999999999988883 11128999999999876
Q ss_pred e-eEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeE-EEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 576 I-KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 576 ~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
. +..........+..++|+|+++.+++++ .||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 4444433333788899999999997655 799999999998874 555554444558999999999988764 5679
Q ss_pred EEEEEcCCC
Q 001343 653 FKILANAIG 661 (1096)
Q Consensus 653 i~iwd~~~~ 661 (1096)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999776
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-31 Score=291.67 Aligned_cols=248 Identities=15% Similarity=0.219 Sum_probs=204.0
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CCC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~ 419 (1096)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++.... ..+.+|.+.|.+++|+| +++
T Consensus 11 ~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ---CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGSS
T ss_pred cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCCC
Confidence 5999999999999999 799999999999999987753211 12788999999999986 489
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEEEEE-cCCce---EEEeeCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGH 493 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~~~---~~~~~~~ 493 (1096)
+|++|+.|++|++||+.+++.. ....+.+|...|++++|+|+ +. +|++|+.|++|++|| ..+.. ...+.+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 9999999999999999886432 22257789999999999998 66 899999999999999 54422 3556789
Q ss_pred CCCeEEEEeeecC---------------CCcEEEEEECCCeEEEEEcCCCC---eeeEEeCCCCcEEEEEEcCCC----C
Q 001343 494 EAPVYSICPHHKE---------------NIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADG----S 551 (1096)
Q Consensus 494 ~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~~----~ 551 (1096)
...|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++ .
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 9999999998752 14689999999999999997553 445677888899999999987 7
Q ss_pred EEEEEeeccCCCCeEEEEeCCCC---e-eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEG---T-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
+|++++. |+.|++|++.+. . ....+..|.. .+.+++|+|++++|++++.|+.|++|+..
T Consensus 230 ~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 230 TIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEET----TCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEcC----CCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 8999987 999999998763 1 2234455655 89999999999999999999999999976
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=292.69 Aligned_cols=249 Identities=17% Similarity=0.297 Sum_probs=204.9
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~ 478 (1096)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 47789999999999999999999999999999999886432 12368899999999999863 67 899999999999
Q ss_pred EEE-cCC--ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe---eeEEeCCCCcEEEEEEcCC---
Q 001343 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD--- 549 (1096)
Q Consensus 479 iwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~--- 549 (1096)
+|| .++ ..+..+.+|...|.+++|+|..++.+|++|+.||+|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999 665 4667788999999999999875578999999999999999987643 2344567778999999997
Q ss_pred --------------CCEEEEEeeccCCCCeEEEEeCCCC---eeeEEEcCcCccceEEEEEeCCC----CEEEEEEcCCe
Q 001343 550 --------------GSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQ 608 (1096)
Q Consensus 550 --------------~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~ 608 (1096)
+++|++++. |+.|++||++.+ +.+..+.+|.. .|.+++|+|++ .+|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 468888886 999999999755 46677888887 89999999986 78999999999
Q ss_pred EEEEeCCCC---e-EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 609 IKFWDMDNV---N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 609 i~iwd~~~~---~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
|++|++.+. . ....+..+. ..|.+++|+|++++|++++.|+.|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKFN--DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEECS--SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcCC--CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999998762 1 122233343 389999999999999999999999999975
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=290.57 Aligned_cols=279 Identities=17% Similarity=0.198 Sum_probs=236.6
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
.+.+++|++ ..+++++.|+.|++||+.+++..... ...|...|++++|+|+++ +|++|+.||.|++|| .+++.
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~~~~~~ 168 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYDVESQTK 168 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCE
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEECcCCeE
Confidence 355667765 55788889999999999998766532 224899999999999999 899999999999999 88999
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC-CCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
+..+.+|...|.+++|+ +.++++++.||.|++||++ .......+..|...|.+++|+|+++++++++. ++.
T Consensus 169 ~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----d~~ 240 (401)
T 4aez_A 169 LRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN----DNV 240 (401)
T ss_dssp EEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC----CCe
Confidence 99999999999999983 3699999999999999999 45556788889999999999999999999987 899
Q ss_pred EEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC-EEEEEE--cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC
Q 001343 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1096)
|++||+.+++.+..+..|.. .+.+++|+|++. .+++++ .|+.|++||+.+++.+..+... ..|.+++|+|++.
T Consensus 241 v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~ 316 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSK 316 (401)
T ss_dssp EEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSS
T ss_pred EEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCC
Confidence 99999999999999988877 889999999775 555554 6999999999999999888643 2799999999999
Q ss_pred EEEEEE--CCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCC
Q 001343 643 LLAVTT--ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1096)
Q Consensus 643 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~ 720 (1096)
.+++++ .||.|++|++.++. .
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~-~-------------------------------------------------------- 339 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSG-L-------------------------------------------------------- 339 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTE-E--------------------------------------------------------
T ss_pred eEEEEeecCCCcEEEEecCCcc-c--------------------------------------------------------
Confidence 999954 89999999986541 0
Q ss_pred ccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccC
Q 001343 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 795 (1096)
Q Consensus 721 ~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~ 795 (1096)
.....+.+ |...|.+++|+|++..+++++.||.|++|++..
T Consensus 340 -------------------------------~~~~~~~~---h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 340 -------------------------------TKQVDIPA---HDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp -------------------------------EEEEEEEC---CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred -------------------------------eeEEEecC---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 00112233 888999999999999999999999999999754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=290.99 Aligned_cols=254 Identities=15% Similarity=0.203 Sum_probs=211.9
Q ss_pred EEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCC--CeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
+.++. |.+.|++++|+|+|+ +||+|+.||.|+|||+..+ +.+. .+.+|...|.+++|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~ 63 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDW 63 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEE
T ss_pred cEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEe
Confidence 44454 999999999999999 6999999999999999843 3332 27789999999999
Q ss_pred cCC--CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEEEEE-cCC--ceE
Q 001343 415 SPD--GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKL 487 (1096)
Q Consensus 415 spd--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~--~~~ 487 (1096)
+++ +++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|+.|++|| ..+ ...
T Consensus 64 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~ 140 (379)
T 3jrp_A 64 AHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSP 140 (379)
T ss_dssp CCGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCE
T ss_pred CCCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceee
Confidence 987 999999999999999999987521 22257789999999999999 88 899999999999999 555 345
Q ss_pred EEeeCCCCCeEEEEeeecC-----------CCcEEEEEECCCeEEEEEcCCCCee----eEEeCCCCcEEEEEEcCC---
Q 001343 488 FNFEGHEAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSAD--- 549 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~l~~s~~--- 549 (1096)
..+.+|...|.+++|+|.. ++.++++++.||.|++||+++.... ..+..|...|.+++|+|+
T Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence 5678899999999998742 4689999999999999999876533 456678889999999999
Q ss_pred CCEEEEEeeccCCCCeEEEEeCCCCe---eeEEEc--CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE
Q 001343 550 GSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYA--GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1096)
++++++++. ++.|++||+.++. ....+. .+.. .+.+++|+|++++|++++.||.|++|++..+..
T Consensus 221 ~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 221 RSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp SEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 899999987 9999999998864 222222 2444 789999999999999999999999999985443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=288.46 Aligned_cols=296 Identities=10% Similarity=0.124 Sum_probs=219.8
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CC
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~ 418 (1096)
.+|.+.|++++|+|+|+ +||+|+.||.|+|||+.++..... ....+.+|...|.+++|+| |+
T Consensus 8 ~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~ 71 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYG 71 (351)
T ss_dssp CCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGC
T ss_pred cccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCC
Confidence 35999999999999999 799999999999999987653211 1123678999999999999 69
Q ss_pred CEEEEEECCCeEEEEEccCCCcc------ccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEEEEE-cCCceEEE
Q 001343 419 NYVGVAFTKHLIQLYSYAGSNDL------RQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~~~------~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 489 (1096)
++|++|+.||.|++||+.+++.. .....+.+|.+.|.+++|+|+ +. +|++++.|+.|++|| .+++.+..
T Consensus 72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTC
T ss_pred CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhcc
Confidence 99999999999999999886421 223467789999999999999 88 899999999999999 77765544
Q ss_pred ee-------------CCCCCeEEEEeeec-CCCcEEEEEECCCeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCCC---
Q 001343 490 FE-------------GHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADG--- 550 (1096)
Q Consensus 490 ~~-------------~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~--- 550 (1096)
+. +|...+.+++|+|. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence 32 68889999999874 1257999999999998888777665 45666788899999999998
Q ss_pred -CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE----EcCCeEEEEeCCCCeEEEEeec
Q 001343 551 -SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV----GEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 551 -~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
+++++++. ++.|++||+.++........... ........+....+..+ .....+.+|+....+.+..+..
T Consensus 230 ~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
T 3f3f_A 230 YQLIATGCK----DGRIRIFKITEKLSPLASEESLT-NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD 304 (351)
T ss_dssp SEEEEEEET----TSCEEEEEEEECC----------------------------------------CCSEEEEEEEEECT
T ss_pred ceEEEEEcC----CCeEEEEeCCCCcCccccCCccc-ceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence 78999886 99999999987655444333222 22223333333333332 3445566677666777777776
Q ss_pred CCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|.. .|++++|+|++++|++++.||.|++|++.++
T Consensus 305 h~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 305 HNG--EVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp TSS--CEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccc--cEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 655 8999999999999999999999999999876
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=285.65 Aligned_cols=267 Identities=17% Similarity=0.280 Sum_probs=224.2
Q ss_pred eeecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC
Q 001343 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1096)
+|+..+........++ |...|+||+|+|+|+ +||+|+.||+|+|||+.+++.+.. +.+|
T Consensus 129 lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~~~-------------------~~~h 188 (420)
T 4gga_A 129 LWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRN-------------------MTSH 188 (420)
T ss_dssp EEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCC
T ss_pred EEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEEEE-------------------EeCC
Confidence 9998865444334444 888999999999999 799999999999999999987754 7789
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
...|.+++|+ +.+|++|+.|+.+++||........ ..+.+|...+..+.|+|++. ++++++.|+.|++|+ ..+
T Consensus 189 ~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~--~~~~~h~~~~~~~~~~~~g~--~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 189 SARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV--ATLSGHSQEVCGLRWAPDGR--HLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE--EEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEESSCC
T ss_pred CCceEEEeeC--CCEEEEEeCCCceeEeeecccceee--EEecccccceeeeeecCCCC--eeeeeeccccceEEeeccc
Confidence 9999998874 6799999999999999988754332 25789999999999999999 899999999999999 655
Q ss_pred c----eEEEeeCCCCCeEEEEeeecCCCcEEEEE--ECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 485 R----KLFNFEGHEAPVYSICPHHKENIQFIFST--AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 485 ~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
+ .+.....|...|.+++|+|... .+++++ +.|++|++||+.++.....+..+ ..+.++.|+++++.+++++.
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~-~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCT-TEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEEC
T ss_pred cccceeeeeecccCCceeeeeeCCCcc-cEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEe
Confidence 4 3567788999999999988643 566554 57999999999998887777655 46889999999999988753
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
. .++.|++||+.+++.+.++.+|.. .|.+++|+|+|.+|++|+.|++|+|||+....+.....
T Consensus 341 ~--~d~~I~iwd~~~~~~v~~l~gH~~-~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 341 F--AQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp T--TTCCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred c--CCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence 1 278999999999999999999987 89999999999999999999999999998765554443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=295.94 Aligned_cols=247 Identities=12% Similarity=0.185 Sum_probs=205.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCc--------cccceeecccc------------cCEEEEEEecCC-
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND--------LRQHSQIDAHV------------GAVNDLAFAYPN- 463 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~l~~h~------------~~v~~l~~s~d~- 463 (1096)
|.+.|.+++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. +.|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 678999999999999999999999999999997752 11233677898 889999999998
Q ss_pred -CcEEEEEEeCCCcEEEEE-cCCceE---------------------------------------EE-eeCCCCCeEEEE
Q 001343 464 -KLLCVVTCGDDKLIKVWE-LSGRKL---------------------------------------FN-FEGHEAPVYSIC 501 (1096)
Q Consensus 464 -~~~~l~s~s~d~~i~iwd-~~~~~~---------------------------------------~~-~~~~~~~v~~~~ 501 (1096)
. .|++++.|++|++|| .++... .. ..+|...|.+++
T Consensus 107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 6 899999999999999 543321 12 368999999999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeE--------EeCCCCcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEeCC
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--------YDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
|+| ++.+|++| .||.|++||++....... +..|...|.+++|+|++ +++++++. ++.|++||++
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~ 257 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR 257 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence 987 66899998 899999999985443332 44778899999999998 89999987 9999999999
Q ss_pred CCee----eEEEcCcCc-----------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecCCCCCC-----
Q 001343 573 EGTI----KRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPN----- 631 (1096)
Q Consensus 573 ~~~~----~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~----- 631 (1096)
+++. +..+.++.. ..+.+++|+|++.+|++++. +.|++||+.. ++.+..+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 9887 788888765 27999999999999999999 9999999997 888888877643111
Q ss_pred --------ccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 632 --------LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 632 --------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+..++|+|++.+|++++.||.|++||+.++
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 234999999999999999999999999887
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=283.98 Aligned_cols=253 Identities=19% Similarity=0.299 Sum_probs=217.2
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~ 478 (1096)
++.+|.+.|.+++|+|++++||+|+.||.|++||+..+.. .....+.+|.+.|++++|+++ +. +|++|+.||.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 4788999999999999999999999999999999984321 222367899999999999977 77 899999999999
Q ss_pred EEE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCC--eeeEEeCCCCcEEEEEEcC-----
Q 001343 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (1096)
Q Consensus 479 iwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~----- 548 (1096)
+|| .+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999 7776 77888899999999999886336899999999999999998874 3446678888999999999
Q ss_pred --------CCCEEEEEeeccCCCCeEEEEeCCCCe----eeEEEcCcCccceEEEEEeCC---CCEEEEEEcCCeEEEEe
Q 001343 549 --------DGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (1096)
Q Consensus 549 --------~~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd 613 (1096)
++.++++++. ++.|++||++++. ....+.+|.. .+.+++|+|+ +.+|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999987 9999999997654 5567778877 8999999999 89999999999999999
Q ss_pred CCCCe---EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 614 MDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 614 ~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.++. .........+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 98864 3344444345558999999999999999999999999998754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=269.18 Aligned_cols=236 Identities=18% Similarity=0.250 Sum_probs=197.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE
Q 001343 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 487 (1096)
.++|+||+++ +||+| .|++|+|||+.+++.++.+ .+.+|...|++++|+|+++ +|++|+.||+|++|| .+++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5789999986 77776 4899999999999877643 3568899999999999999 899999999999999 999999
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
..+.+|...+.++.+ ++..+++++.++.+++|+...... ...+..|...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988765 336899999999999999887654 4567888899999999999999999987 9999
Q ss_pred EEEeCCCCee----eEEEcCcCccceEEEEEeCCCCEE---EEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 567 VEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHF---LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 567 ~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
++||+.+++. ......+.. .+..+.++|++..+ ++++.++.|++||.............. .+..+.|+|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~---~v~~~~~~~ 250 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSP 250 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCCS-CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS---CEEEEEEET
T ss_pred eEEECCCCcccccceeeecccCC-ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee---eeeeeeecc
Confidence 9999987653 334444544 78889999876543 345678999999999888777665433 689999999
Q ss_pred CCCEEEEEE--CCCcEEEEEcCCC
Q 001343 640 EGNLLAVTT--ADNGFKILANAIG 661 (1096)
Q Consensus 640 ~~~~l~~~~--~dg~i~iwd~~~~ 661 (1096)
++..+++++ .|+.|++||+.++
T Consensus 251 ~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 251 HYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp TTTEEEEEECTTTCCEEEEETTTC
T ss_pred cccceEEEEEcCCCEEEEEECCCC
Confidence 998887765 7899999998665
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-29 Score=285.64 Aligned_cols=273 Identities=16% Similarity=0.266 Sum_probs=230.8
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
.+|...|.|++| ++++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ +|++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 447778999887 79999999999999999999987766 57899999999999 677 899999999999999
Q ss_pred cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee---eEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
.+++.+..+.+|...|.+++|+ +..+++|+.||.|++||+++.... ..+..|...|.++++ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 8999999999999999999984 358999999999999999987765 567788889999999 7889999987
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
++.|++||+++++.+..+.+|.. .+.++.+ +++.+++|+.||.|++||+.+++.+..+..+.. .|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe-
Confidence 99999999999999999999887 7888888 468999999999999999999999999887755 8999998
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCcc--------ccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCc
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLR--------SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~ 710 (1096)
++.+|++|+.||.|++||+.++.. ....+.++ ...|.+++|
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~------------------------- 393 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-----SGRVFRLQF------------------------- 393 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-----SSCCCCEEE-------------------------
T ss_pred -cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC-----CCCeEEEEe-------------------------
Confidence 788999999999999999876521 22233332 223334443
Q ss_pred CCCcccCCCCccCCCCCCccccCCCCCccceeeee
Q 001343 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1096)
Q Consensus 711 ~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 745 (1096)
++..+++++.||.|++|++..
T Consensus 394 --------------~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 394 --------------DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp --------------CSSCEEECCSSSEEEEEC---
T ss_pred --------------CCCEEEEEeCCCEEEEEECCC
Confidence 455678999999999999974
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-29 Score=276.12 Aligned_cols=248 Identities=10% Similarity=-0.017 Sum_probs=210.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
..+|.+.|.+++|+|++++|++|+.||.|++||+.+++.......+.+|...|.+++|+|+++. +|++|+.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5679999999999999999999999999999999987632222346689999999999999872 488999999999999
Q ss_pred c-CCceEEEeeC--CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC---------CCeeeEEeCCCCcEEEEEEcCC
Q 001343 482 L-SGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---------MGSRVDYDAPGHWCTTMLYSAD 549 (1096)
Q Consensus 482 ~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~ 549 (1096)
. .......+.+ |...|.+++|++ +.++++++.||.|++||+++ .+....+. +...+.+++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred eccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 7 8878888999 999999999987 47999999999999999987 55555554 6778999999998
Q ss_pred CCEEEEEeeccCCCCeEEEEeCCC-Cee--eEEEcCcCccceEEEEEeC-CCCEEEEEEcCCeEEEEeCCCC------eE
Q 001343 550 GSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNV------NI 619 (1096)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~ 619 (1096)
+ +++++. ++.|++||+++ +.. ......+.. .+.+++|+| +++++++++.||.|++|+++.. +.
T Consensus 162 ~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 162 R--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp E--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred c--EEEEeC----CCeEEEEECCccccccceeeecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 7 777776 89999999988 543 233344444 899999999 9999999999999999999887 77
Q ss_pred EEEeecCCC-------CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 620 LTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 620 ~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
...+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 777776643 348999999999999999999999999998766
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=282.70 Aligned_cols=298 Identities=12% Similarity=0.063 Sum_probs=234.3
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCC---eeecccceeeccccc----------------------------
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRD---RLVSKPFKIWDMAAC---------------------------- 393 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 393 (1096)
.++.|++|+|+|+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 4789999999999 56665 58899999999998 4322 221100
Q ss_pred ------------CccccccccccCCCCEEEEEEcCCCCEE-EEEECCCeEEEEEcc--CCCccccceeecccccCEEEEE
Q 001343 394 ------------SLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLA 458 (1096)
Q Consensus 394 ------------~~~~~~~~~~~h~~~V~~l~~spd~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~l~~h~~~v~~l~ 458 (1096)
..........+|.+.|.+++|+|++++| ++|+.||.|++||+. +++.+..+. ...|...|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000011123577789999999999996 889999999999999 777665321 136789999999
Q ss_pred EecCCCcEEEEEEeCCCcEEEEE-cCCceEE----EeeCCCCCeEEEEeeec-CCCcEEEEEECCCeEEEEEcCCCCeee
Q 001343 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF----NFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (1096)
Q Consensus 459 ~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~ 532 (1096)
|+|+++ +|++|+.|+.|++|+ .+++... .+.+|...|++++|+|. ..+.+|++++.|++|++||++++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 899999999999999 6666443 78899999999999884 126899999999999999999888777
Q ss_pred E-EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC------------------------ccc
Q 001343 533 D-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------------------------KKS 587 (1096)
Q Consensus 533 ~-~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------------------------~~~ 587 (1096)
. ...|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 9999999987 9999999999999988886431 236
Q ss_pred eEEEEEeCCCCEEEEEE-cCCeEEEEeC--CCC---eEEEEeecCCCCCCccEEEEeCCCCEEEEEEC------CCcEEE
Q 001343 588 NGVVQFDTTQNHFLAVG-EDSQIKFWDM--DNV---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKI 655 (1096)
Q Consensus 588 i~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i 655 (1096)
+..++|+|+++++++++ .++.|++|++ ..+ ..+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 78899999999999999 8999999999 555 666667665 37999999996544443332 455888
Q ss_pred EEcCC
Q 001343 656 LANAI 660 (1096)
Q Consensus 656 wd~~~ 660 (1096)
|.+..
T Consensus 387 ~~~~~ 391 (450)
T 2vdu_B 387 IEYNL 391 (450)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 87654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=273.98 Aligned_cols=214 Identities=11% Similarity=0.133 Sum_probs=181.2
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcc-ccceeecccccCEEEEEEec--CCCcEEEEEEeCCCc
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKL 476 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~l~~h~~~v~~l~~s~--d~~~~~l~s~s~d~~ 476 (1096)
.++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+| ++. +|++|+.||.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCe
Confidence 457899999999999999999999999999999999976432 23335779999999999999 578 8999999999
Q ss_pred EEEEE-cCC---------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-----------
Q 001343 477 IKVWE-LSG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----------- 535 (1096)
Q Consensus 477 i~iwd-~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------- 535 (1096)
|++|| ..+ +.+..+.+|...|.+++|+|..++.+|++++.||.|++||+++.+....+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 99999 655 567888999999999999885336899999999999999998776543322
Q ss_pred --CCCCcEEEEEEcCC---CCEEEEEeeccCCCCeEEEEeCCCCee--eEEEcCcCccceEEEEEeCCC----CEEEEEE
Q 001343 536 --APGHWCTTMLYSAD---GSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQ----NHFLAVG 604 (1096)
Q Consensus 536 --~~~~~i~~l~~s~~---~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~----~~l~~~~ 604 (1096)
.+...+.+++|+|+ +..+++++. ++.+.+|+...++. +..+.+|.. .+.+++|+|++ ++|++++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEc
Confidence 45668999999997 899999886 88888888877765 667777776 89999999998 7999999
Q ss_pred cCCeEEEEeCCCCeEE
Q 001343 605 EDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 605 ~dg~i~iwd~~~~~~~ 620 (1096)
.||.|++||+..+...
T Consensus 238 ~dg~i~iwd~~~~~~~ 253 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSP 253 (351)
T ss_dssp TTSCEEEEEEEECC--
T ss_pred CCCeEEEEeCCCCcCc
Confidence 9999999999865443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-29 Score=282.77 Aligned_cols=274 Identities=14% Similarity=0.153 Sum_probs=223.1
Q ss_pred CEEEEEEcCCCCEEE-EEECCCeEEEEEccCCCc-cccceeecccccCEEEEEEec-CCCcEEEEEEeCCCcEEEEE-cC
Q 001343 408 SVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~-s~~~dg~i~vwd~~~~~~-~~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
....++++|+...++ +++.||.|+||++..... ......+.+|.+.|++++|+| ++. +|++|+.||+|++|| .+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 445688998876544 578899999999965432 233345789999999999999 788 899999999999999 66
Q ss_pred C-------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE--eCCCCcEEEEEEcCCCCEEE
Q 001343 484 G-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 484 ~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~ 554 (1096)
+ +++..+.+|...|.+++|+|.+ ..+|++++.||.|++||+++++....+ ..|...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 6 6788899999999999998742 269999999999999999999888888 77888999999999999999
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEE-cCcCccceEEEEEeCCCCEEEEE---EcCCeEEEEeCCCCeE-EEEeecCCCC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTTQNHFLAV---GEDSQIKFWDMDNVNI-LTSTDAEGGL 629 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~ 629 (1096)
+++. ++.|++||+++++.+..+ .+|....+..+.|+|++.++++| +.|+.|++||+.+++. +..... .+.
T Consensus 193 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 267 (402)
T 2aq5_A 193 TSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTS 267 (402)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCC
T ss_pred EEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCC
Confidence 9987 999999999999999998 77777558889999999999998 6899999999998654 333332 223
Q ss_pred CCccEEEEeCCCCEEEEEE-CCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 630 PNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
..+.+++|+|++++|++++ .||.|++|++.++...+..+..+. ...++.+++|+|++.++
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLE 328 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSC
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEecccccc
Confidence 4799999999999997555 799999999988743344443332 23567788888776654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-28 Score=271.97 Aligned_cols=277 Identities=14% Similarity=0.185 Sum_probs=221.4
Q ss_pred ccccCCCCEEEEEEcCC---CCEEEEEECCCeEEEEEccC-CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc
Q 001343 401 IFKDVPISVSRVAWSPD---GNYVGVAFTKHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd---~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~ 476 (1096)
.+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+. ..+.+|.+.|++++|+|+++ +|++++.||.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 37889999999999999 69999999999999999997 44332 25778999999999999999 8999999999
Q ss_pred EEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 477 i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
|++|| .+++.+ .+.+|...|.+++|++.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..+++
T Consensus 110 v~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~ 185 (368)
T 3mmy_A 110 AKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVV 185 (368)
T ss_dssp EEEEETTTTEEE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEE
T ss_pred EEEEEcCCCCce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEE
Confidence 99999 666555 46779999999999766688999999999999999999988888877665 466666654 46677
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEE-EcCcCccceEEEEEeCCCCE----EEEEEcCCeEEEEeCCCC---eEEEEeecCC
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRT-YAGFRKKSNGVVQFDTTQNH----FLAVGEDSQIKFWDMDNV---NILTSTDAEG 627 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~ 627 (1096)
++. ++.+.+|++........ ..........++.+.++... +++++.||.|++|++... ..+..+..+.
T Consensus 186 ~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 186 ATA----ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EEG----GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred EeC----CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 665 88999999987654333 33323335566666655544 999999999999999887 4555665553
Q ss_pred CC----------CCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 628 GL----------PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 628 ~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
.. ..|.+++|+|++++|++++.||.|++||+.++ +.+..+..+ ..+|.+++|+|+|++++++
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-----~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQL-----DQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCC-----SSCEEEEEECTTSSCEEEE
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCC-----CCCceEEEECCCCCeEEEE
Confidence 21 15999999999999999999999999999887 556666654 3468889998887776444
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=309.57 Aligned_cols=251 Identities=15% Similarity=0.196 Sum_probs=210.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC--CC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--GN 419 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--~~ 419 (1096)
+|.+.|++++|+|+|+ +|++|+.||.|+|||+.++.... ...+.+|.+.|.+++|+|+ ++
T Consensus 7 gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~-----------------~~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 7 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp -CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCTTSCS
T ss_pred cCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCcc-----------------ceeccCCcCceEEEEecCCCCCC
Confidence 4999999999999999 59999999999999998433211 1137789999999999998 99
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEEEEE-cCC--ceEEEeeCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGHE 494 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~--~~~~~~~~~~ 494 (1096)
+|++|+.||.|++||+.+++.. ....+.+|...|++++|+|+ +. .+++|+.||.|++|| ..+ .....+.+|.
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCccc-ccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 9999999999999999987521 22257789999999999999 88 899999999999999 555 3456678899
Q ss_pred CCeEEEEeeecC-----------CCcEEEEEECCCeEEEEEcCCCC----eeeEEeCCCCcEEEEEEcCC---CCEEEEE
Q 001343 495 APVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSAD---GSRLFSC 556 (1096)
Q Consensus 495 ~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~---~~~l~~~ 556 (1096)
..|.+++|+|.. ++.++++|+.||.|++||+++.. ....+..|...|.+++|+|+ +++++++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 999999998742 46799999999999999998774 33466788889999999999 8999999
Q ss_pred eeccCCCCeEEEEeCCCCe-----eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 557 GTSKDGDSFLVEWNESEGT-----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
+. ++.|++||+.++. .......+.. .+.+++|+|++.++++++.||.|++|++..+.
T Consensus 226 s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 226 SQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 87 9999999998864 2222233444 78889999999999999999999999998643
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=271.36 Aligned_cols=276 Identities=13% Similarity=0.164 Sum_probs=215.4
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.|.+.|+|++|+|||+ +||+|+.+ .++|||+.+++.... .+...+..++++++++++
T Consensus 17 ~h~~~V~~v~fs~dg~-~la~g~~~-~~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQS-CLILSTLK-SFEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYV 73 (355)
T ss_dssp --CCCCCEEEECTTSS-EEEEECSS-EEEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEE
T ss_pred cCCCceEEEEECCCCC-EEEEEcCC-EEEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEE
Confidence 3999999999999999 79988766 578999987765532 122257888999998888
Q ss_pred E-EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-ceEEEeeCCCCCeE
Q 001343 422 G-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVY 498 (1096)
Q Consensus 422 ~-s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~~~~~v~ 498 (1096)
+ +++.|++|++||..+++.+. .+. |...|.+++|+++. ++.+. |+.|++|| .++ +.+..+.. +..
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred EEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc---CCc
Confidence 5 57778999999999988766 343 67799999998763 34443 88999999 666 66666654 344
Q ss_pred EEEeeecCCCcEEEE--EECCCeEEEEEcCCCC----------------eeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 499 SICPHHKENIQFIFS--TAIDGKIKAWLYDTMG----------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.+++++ .++++ |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|++++.
T Consensus 142 ~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-- 215 (355)
T 3vu4_A 142 VCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-- 215 (355)
T ss_dssp EEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred eEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--
Confidence 455544 35555 6899999999998765 25678899999999999999999999997
Q ss_pred CCCCe-EEEEeCCCCeeeEEEc-C-cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE--EEe------------
Q 001343 561 DGDSF-LVEWNESEGTIKRTYA-G-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL--TST------------ 623 (1096)
Q Consensus 561 ~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~------------ 623 (1096)
|+. |++||+.+++.+..+. + |.. .+.+++|+|++++|++++.|+.|++||+..+... ..+
T Consensus 216 --d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 216 --DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp --TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred --CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 998 9999999999999998 5 655 8999999999999999999999999999764311 111
Q ss_pred ------ecC-CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 624 ------DAE-GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 624 ------~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
... ........++|+++++.+++++.||.+++|++..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 000 11123477999999999999999999999998665
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-27 Score=265.36 Aligned_cols=276 Identities=9% Similarity=0.046 Sum_probs=224.0
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE-EEEECCCeEEEEEcc
Q 001343 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYA 436 (1096)
Q Consensus 358 ~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-~s~~~dg~i~vwd~~ 436 (1096)
+++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 4788999999999999999887643 3444 458999999999987 566689999999999
Q ss_pred CCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEE-EEE
Q 001343 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FST 514 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~ 514 (1096)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++|| .+++.+..+..+ ..+.+++|++ +++.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEEe
Confidence 987665 344343 8999999999993 335666789999999 778888777754 4689999976 55666 788
Q ss_pred ECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEe
Q 001343 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (1096)
Q Consensus 515 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 594 (1096)
+.++.|++||+.+++....+..+ ..+.+++|+|+++.+++++. .++.|++||+.+++.+..+..+. .+..++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 88999999999988877776654 45799999999998854432 27899999999999888876543 67889999
Q ss_pred CCCCEEEEEE---cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEE-EEEECCCcEEEEEcCCCccccccccC
Q 001343 595 TTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 595 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.|+.|++||+.++ +....+..
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 9999999988 68999999999999988887654 57899999999877 56678999999999887 55555544
Q ss_pred C
Q 001343 671 P 671 (1096)
Q Consensus 671 ~ 671 (1096)
+
T Consensus 285 ~ 285 (391)
T 1l0q_A 285 G 285 (391)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-28 Score=277.60 Aligned_cols=266 Identities=14% Similarity=0.242 Sum_probs=215.7
Q ss_pred ceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 336 ~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
.....+.|.+.|++++|+|++..+||+|+.||.|+|||+.+....... .........+.+|...|.+++|+
T Consensus 120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~ 190 (430)
T 2xyi_A 120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWN 190 (430)
T ss_dssp EEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEEC
T ss_pred EEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeC
Confidence 345567799999999999985448999999999999999863111000 00000112377899999999999
Q ss_pred CCCC-EEEEEECCCeEEEEEccCCCcc----ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC---ce
Q 001343 416 PDGN-YVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RK 486 (1096)
Q Consensus 416 pd~~-~l~s~~~dg~i~vwd~~~~~~~----~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~ 486 (1096)
|++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++|| .++ +.
T Consensus 191 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp TTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSC
T ss_pred CCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcc
Confidence 9998 9999999999999999885332 123356789999999999995443 899999999999999 555 57
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCeeeEEeCCCCcEEEEEEcCCCC-EEEEEeeccCCCC
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDS 564 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~~~~~~~ 564 (1096)
+..+..|...|++++|+|.+ ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ ++++++. ++
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~ 344 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DR 344 (430)
T ss_dssp SEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TS
T ss_pred eeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CC
Confidence 78888999999999998843 24799999999999999998 456778888999999999999996 5777775 89
Q ss_pred eEEEEeCCC--------------CeeeEEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCC
Q 001343 565 FLVEWNESE--------------GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 565 ~i~iwd~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (1096)
.|++||+.. .+.+..+.+|.. .+..++|+|++. ++++++.||.|++|++...
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999999987 356677777776 899999999998 8999999999999998753
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=272.32 Aligned_cols=302 Identities=9% Similarity=0.071 Sum_probs=245.7
Q ss_pred eeecCCC--CcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDL--PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~--~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|.++.. ....+..+.+...+.+++|+|++. ++++++.++.|++||+.+++...... ...+.+
T Consensus 103 l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~ 167 (433)
T 3bws_A 103 LIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKK 167 (433)
T ss_dssp EEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHT
T ss_pred EEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccc
Confidence 6666553 335666677667788999999665 78888889999999999988764211 112567
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
|...|.+++|+|+++++++++.|+.|++||+.+++... .+..|...+.+++|+|+++. ++++++.|+.|++|| .+
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKT 243 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTT
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCC
Confidence 99999999999999999999999999999999887665 46689999999999999993 335666899999999 78
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEE--------CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
++.+..+..+ ..+.+++|+| ++.++++++ .||.|++||+.+++..... .+...+.+++|+|+++.+++
T Consensus 244 ~~~~~~~~~~-~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 244 KLEIRKTDKI-GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp TEEEEECCCC-SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEE
T ss_pred CcEEEEecCC-CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEE
Confidence 8888777754 4588999976 667888887 5899999999987665544 33447889999999987765
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEc---------------CCeEEEEeCCCCeEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---------------DSQIKFWDMDNVNIL 620 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~ 620 (1096)
.+. .++.|++||+.+++.+..+... . .+..++|+|+++++++++. ||.|++||..+++.+
T Consensus 320 ~~~---~~~~v~v~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 320 SDM---CCSKIEVYDLKEKKVQKSIPVF-D-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EET---TTTEEEEEETTTTEEEEEEECS-S-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred Eec---CCCEEEEEECCCCcEEEEecCC-C-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 532 2899999999999988888633 3 6788999999999988876 579999999999999
Q ss_pred EEeecCCCCCCccEEEEeCCCCEEEEEEC-CCcEEEEEcC
Q 001343 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~ 659 (1096)
..+.... .+.+++|+|++++|++++. |+.|++|++.
T Consensus 395 ~~~~~~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 395 EFWEAGN---QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECSS---SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEecCCC---CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 8887632 6899999999999998875 9999999985
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=271.48 Aligned_cols=307 Identities=14% Similarity=0.215 Sum_probs=235.8
Q ss_pred CCceEEEEEcCCCC---------cEEEEEeC----CCeEEEEecCCCCeeec----------ccceeecccccCcccccc
Q 001343 344 GSTVISMDFHPSHQ---------TLLLVGSS----NGEITLWELAMRDRLVS----------KPFKIWDMAACSLPFQAS 400 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~---------~llasg~~----dg~I~iwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 400 (1096)
.-+..|+.|.|+.. ..+++|+. ...|.|+++.-...... ..+..+. .....+...
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~ 122 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFG--SVCGKIEIE 122 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC----------------------------CEEEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCcccccccccccccccccccc--CCCCceEEE
Confidence 34678999999752 35777764 35677776541100000 0000000 001112223
Q ss_pred ccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCC-------CccccceeecccccCEEEEEEecCCCcEEEEEEe
Q 001343 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s 472 (1096)
...+|.+.|++++|+|+ +.+||+++.||.|++||+.+. ........+.+|...|++++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 35679999999999997 789999999999999999862 112233367899999999999999876 799999
Q ss_pred CCCcEEEEE-cCCce-------EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC---CeeeEEeCCCCcE
Q 001343 473 DDKLIKVWE-LSGRK-------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWC 541 (1096)
Q Consensus 473 ~d~~i~iwd-~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i 541 (1096)
.||.|++|| ..+.. ...+.+|...|.+++|+|. ++.+|++++.||.|++||+++. .....+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999 54221 4567789999999999875 3479999999999999999977 4566777888999
Q ss_pred EEEEEcCCCC-EEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCC--
Q 001343 542 TTMLYSADGS-RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDN-- 616 (1096)
Q Consensus 542 ~~l~~s~~~~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-- 616 (1096)
.+++|+|++. .+++++. ++.|++||+++ ...+..+.+|.. .+.+++|+|++. .+++++.||.|++||+..
T Consensus 281 ~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp EEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred EEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 9999999998 5777776 99999999998 567888888877 899999999985 689999999999999987
Q ss_pred ------------CeEEEEeecCCCCCCccEEEEeCCCC-EEEEEECCCcEEEEEcCCC
Q 001343 617 ------------VNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 617 ------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+.+.....|.. .|.+++|+|++. ++++++.||.|++|++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGGHTA--KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCCCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcCCCCC--CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 245555555544 899999999998 9999999999999998654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-27 Score=259.72 Aligned_cols=238 Identities=10% Similarity=0.161 Sum_probs=187.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|...|.+++|+|||++||+|+.++ +++||+++++.... .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-----QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-----EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-----eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 577999999999999999999998774 78999987654331 22235888899988883 346788889999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcCCCCEEEEE-ee
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSC-GT 558 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~-~~ 558 (1096)
.+++++..+. +..+|.++++++ + .++++ .|+.|++||+.+. +....+.. ....+++++ .+++++ +.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~ 156 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEF 156 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESS
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCC
Confidence 8899998887 667899999864 2 34444 4889999999987 55444433 445566667 566664 21
Q ss_pred ccCCCCeEEEEeCCCCe----------------eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCe-EEEEeCCCCeEEE
Q 001343 559 SKDGDSFLVEWNESEGT----------------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILT 621 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~ 621 (1096)
.++.|++||+.++. .+..+.+|.. .|.+++|+|++++|++|+.|++ |++||+.+++.+.
T Consensus 157 ---~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 157 ---NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp ---CTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred ---cCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 28999999999875 2778889987 8999999999999999999998 9999999999999
Q ss_pred EeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+....+...|.+++|+|++++|++++.|+.|++||+..+
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 9883212348999999999999999999999999999765
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-28 Score=295.46 Aligned_cols=253 Identities=19% Similarity=0.294 Sum_probs=214.4
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~ 478 (1096)
++.+|.+.|++++|+|++++|++|+.||.|+|||+.++.. .....+.+|.+.|++++|+++ ++ +|++|+.||+|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 4789999999999999999999999999999999984322 223367899999999999988 77 899999999999
Q ss_pred EEE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCC--eeeEEeCCCCcEEEEEEcC-----
Q 001343 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (1096)
Q Consensus 479 iwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~----- 548 (1096)
+|| .+++ .+..+.+|..+|++++|+|..++.++++|+.||.|++||++... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 999 6666 77888899999999999886336899999999999999998773 3456678888999999999
Q ss_pred --------CCCEEEEEeeccCCCCeEEEEeCCCC----eeeEEEcCcCccceEEEEEeCC---CCEEEEEEcCCeEEEEe
Q 001343 549 --------DGSRLFSCGTSKDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (1096)
Q Consensus 549 --------~~~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd 613 (1096)
++..+++++. ++.|++||++++ .....+.+|.. .+.+++|+|+ +.++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999987 999999999876 56677888877 8999999999 89999999999999999
Q ss_pred CCCCeEE---EEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 614 MDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 614 ~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.+++.. .......+...|.+++|+|++.++++++.||.|++|++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 12222334458999999999999999999999999999765
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-26 Score=264.17 Aligned_cols=336 Identities=13% Similarity=0.134 Sum_probs=253.9
Q ss_pred CCEEEEE---EcCCCCEEEEEE--------------CCCeEEEEEcc--CCCccccceeecccccCEEEEEEecCCCcEE
Q 001343 407 ISVSRVA---WSPDGNYVGVAF--------------TKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467 (1096)
Q Consensus 407 ~~V~~l~---~spd~~~l~s~~--------------~dg~i~vwd~~--~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~ 467 (1096)
..+..++ |+|+++.+++.+ .++.+.+|.++ ++. ......+..+ ..+.+++|+|++. +
T Consensus 61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~ 136 (433)
T 3bws_A 61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--L 136 (433)
T ss_dssp EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--E
T ss_pred CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--E
Confidence 3456666 677666555432 23323455443 332 1222234433 4566999999665 7
Q ss_pred EEEEeCCCcEEEEE-cCCceEE-----EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcE
Q 001343 468 VVTCGDDKLIKVWE-LSGRKLF-----NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1096)
Q Consensus 468 l~s~s~d~~i~iwd-~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 541 (1096)
+++++.|+.|++|| .+++.+. .+.+|...|.+++|++ ++.++++++.|+.|++||+++.+....+..+...+
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~ 214 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWS 214 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSE
T ss_pred EEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCe
Confidence 88888899999999 7788776 4568899999999965 56899999999999999999988888888888899
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE--------cCCeEEEEe
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--------EDSQIKFWD 613 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~dg~i~iwd 613 (1096)
.+++|+|+++.+++++. .++.|++||+.+++.+..+..+. .+..++|+|+++.+++++ .||.|++||
T Consensus 215 ~~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 215 KILLYDPIRDLVYCSNW---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp EEEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred eEEEEcCCCCEEEEEec---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 99999999998876552 27899999999999988887654 588899999999999988 488999999
Q ss_pred CCCCeEEEEeecCCCCCCccEEEEeCCCCEE-EEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 614 MDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
+.+++.+..+.... .+.+++|+|+++.+ ++++.|+.|++||+.++ +...
T Consensus 290 ~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~-------------------------- 339 (433)
T 3bws_A 290 MDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQK-------------------------- 339 (433)
T ss_dssp TTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEE--------------------------
T ss_pred CCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEE--------------------------
Confidence 99998877764332 67899999999755 56688999999998655 1110
Q ss_pred EecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEE
Q 001343 693 VSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY 772 (1096)
Q Consensus 693 v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 772 (1096)
.+. +...+.+++|
T Consensus 340 -------------------------------------------------------------~~~------~~~~~~~~~~ 352 (433)
T 3bws_A 340 -------------------------------------------------------------SIP------VFDKPNTIAL 352 (433)
T ss_dssp -------------------------------------------------------------EEE------CSSSEEEEEE
T ss_pred -------------------------------------------------------------Eec------CCCCCCeEEE
Confidence 001 3446778999
Q ss_pred ecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-C
Q 001343 773 TNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-G 851 (1096)
Q Consensus 773 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-d 851 (1096)
+|+++.+++++.+.. .. +..++++++ |
T Consensus 353 s~dg~~l~~~~~~~~------------------------------------------~~----------~~~~~~~g~~d 380 (433)
T 3bws_A 353 SPDGKYLYVSCRGPN------------------------------------------HP----------TEGYLKKGLVL 380 (433)
T ss_dssp CTTSSEEEEEECCCC------------------------------------------CT----------TTCTTSCCSSC
T ss_pred cCCCCEEEEEecCCC------------------------------------------cc----------ccccccccccc
Confidence 999987777765411 00 223344555 7
Q ss_pred CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeC-CCeEEEEeecc
Q 001343 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE-DSTIHIYNVRV 904 (1096)
Q Consensus 852 g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~-dg~i~iw~~~~ 904 (1096)
|.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++|+++.
T Consensus 381 g~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 381 GKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred eEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 9999999999999988876 45789999999 8999888775 99999999863
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=244.05 Aligned_cols=279 Identities=11% Similarity=0.112 Sum_probs=198.3
Q ss_pred cEEEEeCCCC---EEEEEECCCcEEEEEcCCCc--cccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccC
Q 001343 633 PRLRFSKEGN---LLAVTTADNGFKILANAIGL--RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1096)
Q Consensus 633 ~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~ 707 (1096)
.++-|-..+. .+++++. ..|++|+..++. +.+.++..+. .+|..+.+.||...+++..-
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~---------- 106 (356)
T 2w18_A 43 SAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAE-----VPVLQIVPVPDVYNLVCVAL---------- 106 (356)
T ss_dssp EEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCS-----SCEEEECCCTTCCSCEEEEE----------
T ss_pred eeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccC-----ceeEEEEEcCcccceeeeee----------
Confidence 3444544332 6666765 489999998873 4455555553 35667787777554422211
Q ss_pred CCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecC----CceEEEee
Q 001343 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS----AVGLLALG 783 (1096)
Q Consensus 708 ~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~----~~~l~~~~ 783 (1096)
| ..+...|+.++++|| ++.+++++
T Consensus 107 ----------------------------~------------------------~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 107 ----------------------------G------------------------NLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp ----------------------------C------------------------SSSEEEEEEECC------CCEEEEEEE
T ss_pred ----------------------------c------------------------cccccceEEEEECCCccccccEEEeCC
Confidence 0 115668999999999 88777766
Q ss_pred cCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec---CCeEEEEEc-
Q 001343 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNM- 859 (1096)
Q Consensus 784 ~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~---dg~v~iwd~- 859 (1096)
.+ +++|.+ ++|+++.++. |+.|++|++
T Consensus 135 ~~--~~v~~l-----------------------------------------------~~g~lv~ss~~g~d~~V~~~~~s 165 (356)
T 2w18_A 135 NI--KAVLGL-----------------------------------------------TKRRLVSSSGTLSDQQVEVMTFA 165 (356)
T ss_dssp EE--EEEEEE-----------------------------------------------TTTEEEEEESSSTTCEEEEEEEC
T ss_pred Ce--EEEEec-----------------------------------------------CCCcEEEecccCCCCcEEEEEEC
Confidence 33 444442 3566777744 788888888
Q ss_pred ccceEEEeecCCCCCeeEEEEec--CCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCC--CCCc
Q 001343 860 MTFKVMTTFMSPPPASTFLAFHP--QDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTP--TGDT 935 (1096)
Q Consensus 860 ~~~~~~~~~~~h~~~i~~l~~s~--~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~v~ 935 (1096)
.+|+.+..+.+|...++.++|++ +++.+|++|+.|++|+|||+.+++ +++.+.+|.. ..+.
T Consensus 166 ~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk---------------~l~tL~g~~~~v~~v~ 230 (356)
T 2w18_A 166 EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ---------------LLKKMHIDDSYQASVC 230 (356)
T ss_dssp TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC---------------EEEEEECCC---CCCE
T ss_pred CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc---------------EEEEEcCCCcceeeeE
Confidence 55888888888999998888887 467899999999999999999988 4445544322 3677
Q ss_pred eEEEecCCcEEE------------E-EecceEEEEEcccceeccccc----cCCCCCCCceEEEEeeCCcEEEEEecCCc
Q 001343 936 RVQFNADQVRML------------V-VHETQLAIYDASKMERIRQWT----PQDALSAPISCAVYSCNSQLVFATFCDGN 998 (1096)
Q Consensus 936 ~v~fs~dg~~l~------------~-~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~i~~l~~s~dg~~la~~~~dg~ 998 (1096)
+++|||||++++ + +.|++|++||..+++++..+. .+| ...+.+.. .++.++|+++.|++
T Consensus 231 ~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh--~~~~lsg~--~sg~~lASgS~DgT 306 (356)
T 2w18_A 231 HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQ--AGRFLEGD--VKDHCAAAILTSGT 306 (356)
T ss_dssp EEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTC--CCCEEEEE--EETTEEEEEETTSC
T ss_pred EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCC--cceeEccc--cCCCEEEEEcCCCc
Confidence 889999999874 3 468999999999999876552 232 44444333 44889999999999
Q ss_pred EEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEcc
Q 001343 999 IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1059 (1096)
Q Consensus 999 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v 1059 (1096)
|+|||+.+++++..+. + |...+.+ .++|+| ||++|++|+.|++|++||+
T Consensus 307 IkIWDl~tGk~l~tL~-------g---H~~~vvs-~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQCTALLP-------P---VSDQHWS-FVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTTCSEEEEEC-------C---C--CCCC-EEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCcEEEEec-------C---CCCCeEE-EEEECC-CCCEEEEEECCCcEEEecC
Confidence 9999999999887765 3 7766664 589999 9999999999999999986
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-27 Score=266.78 Aligned_cols=302 Identities=12% Similarity=0.091 Sum_probs=200.2
Q ss_pred CceEEEEE---cCCCCcEEEEEeCCCeEEEEecCCCCeeec-----ccceeecccccC-----ccccccccccCCCCEEE
Q 001343 345 STVISMDF---HPSHQTLLLVGSSNGEITLWELAMRDRLVS-----KPFKIWDMAACS-----LPFQASIFKDVPISVSR 411 (1096)
Q Consensus 345 ~~V~~v~f---sp~g~~llasg~~dg~I~iwd~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~~h~~~V~~ 411 (1096)
....++.| +|++..++++| .++.|.+|+......... ..+..+...... .+........|...+..
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 34566666 55665566666 588899998653321111 011111110000 00001112334445555
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEccCCCccc--cceeecccccCEEEEEEec--------CCCcEEEEEEeCCCcEEEEE
Q 001343 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAY--------PNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 412 l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~l~~h~~~v~~l~~s~--------d~~~~~l~s~s~d~~i~iwd 481 (1096)
..+++++.+||+|+.|++|+|||..+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+|||
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWR 172 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEE
Confidence 5666678899999999999999999876542 2235789999999999998 777 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-------------------------e
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------------------------D 535 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------~ 535 (1096)
.++.++..+.+|..+|.+++|+|.+ ..+|++++.||+|++||+++++..... .
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 7888888888999999999998842 358999999999999999876543321 2
Q ss_pred CCCCcEEEEEEc-CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEE------------------EEEeC-
Q 001343 536 APGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV------------------VQFDT- 595 (1096)
Q Consensus 536 ~~~~~i~~l~~s-~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~------------------~~~~~- 595 (1096)
.+...+.++.|+ ++++.+++++. ++.+++||+..++....+..+.. .+.. ..++|
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred cccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEccC
Confidence 345567888886 89999999987 99999999988776666554432 2221 22333
Q ss_pred -CCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 596 -TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 596 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
++.++++|+.||.|++||+.+++.......+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 233566677899999999999988877776655 899999999999999998776 666655
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=255.40 Aligned_cols=322 Identities=11% Similarity=0.031 Sum_probs=243.3
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
+|+.+ .+++...+.+...+.+++|+|+|++++++++.|+.|++||+.+++.+.. +..+
T Consensus 16 v~d~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-------------------~~~~- 73 (391)
T 1l0q_A 16 VIDVT--SNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAG- 73 (391)
T ss_dssp EEETT--TTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECS-
T ss_pred EEECC--CCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-------------------EECC-
Confidence 77765 4567777776678999999999996668888999999999999887643 2223
Q ss_pred CCEEEEEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
..|.+++|+|++++|++++ .++.|++||+.+++.+. .+. +...+.+++|+|+++. ++++++.|+.|++|| .++
T Consensus 74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~---~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~v~~~d~~~~ 148 (391)
T 1l0q_A 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTK 148 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTT
T ss_pred CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE---EEe-CCCCcceEEECCCCCE-EEEEeCCCCEEEEEECCCC
Confidence 3899999999999886555 56999999999987655 233 4457899999999993 337888899999999 888
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEE-EEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
+.+..+..+. .+.+++|++ ++..+ ++++.++.|++||+++.+....+. +...+.+++|+|+++++++++.+ ..+
T Consensus 149 ~~~~~~~~~~-~~~~~~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~-~~~ 223 (391)
T 1l0q_A 149 AVINTVSVGR-SPKGIAVTP--DGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVD-KYF 223 (391)
T ss_dssp EEEEEEECCS-SEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEEC-SSC
T ss_pred cEEEEEecCC-CcceEEECC--CCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecC-cCC
Confidence 8888887654 568899976 55666 677889999999999887666554 34578999999999999988731 127
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE-EEEEcCCeEEEEeCCCCeEEEEeecCCCCCC-ccEEE-----
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTSTDAEGGLPN-LPRLR----- 636 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~----- 636 (1096)
+.|++||+.+++.+..+..+. .+..++|+|+++++ ++++.|+.|++||+.+++.+..+..+..... ...+.
T Consensus 224 ~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (391)
T 1l0q_A 224 NTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQ 301 (391)
T ss_dssp CEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSC
T ss_pred CcEEEEECCCCeEEEEEecCC--CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccc
Confidence 899999999999999888765 46789999999988 5567899999999999999888765432100 01122
Q ss_pred -------EeCCC----------CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEe
Q 001343 637 -------FSKEG----------NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1096)
Q Consensus 637 -------~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~ 694 (1096)
|+.+. ..+...+.|...++|++.++.... .. -....|+++|.+.+.
T Consensus 302 ~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~-----~~-------~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 302 PVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK-----KQ-------NPTHTYSETGIYTVR 364 (391)
T ss_dssp CCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC-----SS-------SCEECCSSCEEEEEE
T ss_pred ccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC-----cC-------CCeEEeCCCceEEEE
Confidence 22211 235555668889999998773211 11 112578888877643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=264.93 Aligned_cols=241 Identities=15% Similarity=0.093 Sum_probs=199.6
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeec--------------------------------------
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-------------------------------------- 448 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~-------------------------------------- 448 (1096)
.++.+++|+|||++|+++ .++.|++||+.+|+....+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 378899999999977666 57899999999988211111222
Q ss_pred ----------------ccccCEEEEEEecCCCcEEE-EEEeCCCcEEEEE-c--CCceEEEee--CCCCCeEEEEeeecC
Q 001343 449 ----------------AHVGAVNDLAFAYPNKLLCV-VTCGDDKLIKVWE-L--SGRKLFNFE--GHEAPVYSICPHHKE 506 (1096)
Q Consensus 449 ----------------~h~~~v~~l~~s~d~~~~~l-~s~s~d~~i~iwd-~--~~~~~~~~~--~~~~~v~~~~~~~~~ 506 (1096)
+|.+.|++++|+|+++ +| ++|+.||.|++|| . +++.+..+. .|...|.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-- 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-- 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--
Confidence 3555799999999999 64 8999999999999 6 788888886 5678899999977
Q ss_pred CCcEEEEEECCCeEEEEEcCCCCeee----EEeCCCCcEEEEEEcCC---CCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 507 NIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSAD---GSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~---~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
++.+|++++.+|.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDK 235 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEE
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeee
Confidence 66899999999999999998776543 66778889999999999 999999987 89999999999998887
Q ss_pred E-cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC-----------------------CCCCCccEE
Q 001343 580 Y-AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----------------------GGLPNLPRL 635 (1096)
Q Consensus 580 ~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~~ 635 (1096)
+ .+|.. .+.+++|+ ++.+|++++.|+.|++||+.+++.+..+..+ .....|.++
T Consensus 236 ~~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 236 WLFGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp ECCCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred eecCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 4 46766 89999999 9999999999999999999999988887632 112357788
Q ss_pred EEeCCCCEEEEEE-CCCcEEEEEc
Q 001343 636 RFSKEGNLLAVTT-ADNGFKILAN 658 (1096)
Q Consensus 636 ~~s~~~~~l~~~~-~dg~i~iwd~ 658 (1096)
+|+|+++++++++ .|+.|++|++
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe
Confidence 8888888888887 7888888887
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=263.96 Aligned_cols=267 Identities=8% Similarity=0.064 Sum_probs=211.2
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeE
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i 430 (1096)
.+.+++. ++++|+.||.|++||+.+++.+.. +. ...|.++.|+|+ +++|+.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 4456777 799999999999999999987653 11 346777888888 9999999999
Q ss_pred EEEEcc---------CCCccccceeecccccCEEEEEEec--CCCcEEEEEEeCCCcEEEEE-cCCceEEEee-CCCCCe
Q 001343 431 QLYSYA---------GSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPV 497 (1096)
Q Consensus 431 ~vwd~~---------~~~~~~~~~~l~~h~~~v~~l~~s~--d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-~~~~~v 497 (1096)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++|+.||+|++|| .+++.+.... .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999766 3332222 1236778999999999 999 899999999999999 8888876664 456689
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee-eEEeC-CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
.+++|+| ++.+|++|+.||.|++||++++... ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 9999977 6789999999999999999998887 67777 889999999999999999998 4499999999987
Q ss_pred eeEEEcCcCc--cce--EEEEEeCCCCEEEEEEc-CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC---CCCEEEEE
Q 001343 576 IKRTYAGFRK--KSN--GVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAVT 647 (1096)
Q Consensus 576 ~~~~~~~~~~--~~i--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~ 647 (1096)
.+..+..+.. ..+ .+++|+|++++|++++. |+.|++|++......... ..+..+.|.+ +...++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 7655543211 122 36999999999999998 999999999765433332 1566778888 88899999
Q ss_pred ECCCcEEEEEcC
Q 001343 648 TADNGFKILANA 659 (1096)
Q Consensus 648 ~~dg~i~iwd~~ 659 (1096)
+.|+.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999999987543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=263.36 Aligned_cols=280 Identities=10% Similarity=0.016 Sum_probs=211.4
Q ss_pred ccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCC
Q 001343 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (1096)
Q Consensus 721 ~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~ 800 (1096)
.+..++.++++|+.||+|++||+.. ......+ ....|.++.|+|+ +++++.|+++++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~---~~~~~~~-------~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~----- 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKD---SKTITTI-------TTPNPRTGGEHPA---IISRGPCNRLLLLYPGN----- 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESS---SSCEEEE-------EEECCCTTCCCCS---EEEECSTTEEEEEETTT-----
T ss_pred hhcCCCCEEEEECCCCcEEEEECCC---CcEEEEE-------ecCCceeeeeCCc---eEEecCCCeEEEEEccC-----
Confidence 3456788899999999999999973 2222222 2345677788887 89999999999999754
Q ss_pred CCceeeecCccccccCccccccccccCCCcCCCeeeeeecC--CCcEEEEec-CCeEEEEEcccceEEEeec-CCCCCee
Q 001343 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK--NDSYVMSAT-GGKISLFNMMTFKVMTTFM-SPPPAST 876 (1096)
Q Consensus 801 ~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~--dg~~la~~~-dg~v~iwd~~~~~~~~~~~-~h~~~i~ 876 (1096)
.+.+|+..++..+.....+ |...|.+++|+| +++++++++ ||+|++||+.+++.+.... .|...++
T Consensus 105 --------~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~ 174 (343)
T 3lrv_A 105 --------QITILDSKTNKVLREIEVD--SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS 174 (343)
T ss_dssp --------EEEEEETTTCCEEEEEECC--CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCC
T ss_pred --------ceEEeecCCcceeEEeecC--CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceE
Confidence 4567888877755533333 778999999999 999999998 7999999999999877764 4455899
Q ss_pred EEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceee-ecCCC-CCCCCCceEEEecCCcEEEEEecceE
Q 001343 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTI-HIPAG-KTPTGDTRVQFNADQVRMLVVHETQL 954 (1096)
Q Consensus 877 ~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~-~~~~~-~~~~~v~~v~fs~dg~~l~~~~d~~i 954 (1096)
+++|+| ++.+|++|+.||.|++||+.+++ .+ ..+.+ |.. .|.+++|+|+|.+|+++.++.|
T Consensus 175 ~~~~~p-dg~~lasg~~dg~i~iwd~~~~~---------------~~~~~~~~~h~~-~v~~l~fs~~g~~l~s~~~~~v 237 (343)
T 3lrv_A 175 SGVLHK-DSLLLALYSPDGILDVYNLSSPD---------------QASSRFPVDEEA-KIKEVKFADNGYWMVVECDQTV 237 (343)
T ss_dssp EEEECT-TSCEEEEECTTSCEEEEESSCTT---------------SCCEECCCCTTS-CEEEEEECTTSSEEEEEESSBE
T ss_pred EEEECC-CCCEEEEEcCCCEEEEEECCCCC---------------CCccEEeccCCC-CEEEEEEeCCCCEEEEEeCCeE
Confidence 999999 99999999999999999999877 23 34555 776 9999999999999999667799
Q ss_pred EEEEcccceeccccccCCCCCCCce--EEEEeeCCcEEEEEec-CCcEEEEecCCCceeEEEccccccCCCccCCCcccc
Q 001343 955 AIYDASKMERIRQWTPQDALSAPIS--CAVYSCNSQLVFATFC-DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1031 (1096)
Q Consensus 955 ~iwd~~~~~~~~~~~~~~~~~~~i~--~l~~s~dg~~la~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 1031 (1096)
++||+.+++++..+.....+...+. +++|+|+|++|++++. |+.|+||++++........ ++.
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~~--------------~~~ 303 (343)
T 3lrv_A 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKD--------------EES 303 (343)
T ss_dssp EEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEEE--------------EEE
T ss_pred EEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEec--------------Cce
Confidence 9999999887766554211133344 6999999999999998 9999999997665222211 222
Q ss_pred ceEEEecCC--CCceEEEEeeCCcEEEEccCC
Q 001343 1032 PLVVAAHPL--EPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 1032 s~~l~~s~~--d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
.++|.+. +...+++++.||.+.++-...
T Consensus 304 --~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 304 --ALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp --ECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred --eEecCccccccceeEEEecCCceEEEEecC
Confidence 2455431 466788888888888775433
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-25 Score=258.81 Aligned_cols=341 Identities=11% Similarity=0.139 Sum_probs=252.6
Q ss_pred EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC--CCCeEEEEe
Q 001343 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM--DNVNILTST 623 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~ 623 (1096)
++|++..+++++. ++.|.+||..+++++.++..... +..++|+|+|+++++++.|+.|++||+ .+++.+..+
T Consensus 145 ~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 145 LDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred cCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 6788877777765 89999999999999999984433 778999999999999999999999999 888888888
Q ss_pred ecCCCCCCccEEEEeC----CCCEEEEEEC-CCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCC
Q 001343 624 DAEGGLPNLPRLRFSK----EGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1096)
Q Consensus 624 ~~~~~~~~v~~~~~s~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~ 698 (1096)
.... .+..++|+| +|+++++++. +++|.+||..++ +.++.+......
T Consensus 219 ~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~------------------------ 270 (543)
T 1nir_A 219 KIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMT------------------------ 270 (543)
T ss_dssp ECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEEC------------------------
T ss_pred ecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcc------------------------
Confidence 7432 579999999 9999998884 899999998766 333322211000
Q ss_pred CceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCce
Q 001343 699 ANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (1096)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 778 (1096)
+ ..... . ....+..+.++|++..
T Consensus 271 -----------------------------------------~--------~~~~~--~------~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 271 -----------------------------------------V--------DTQTY--H------PEPRVAAIIASHEHPE 293 (543)
T ss_dssp -----------------------------------------S--------SSCCE--E------SCCCEEEEEECSSSSE
T ss_pred -----------------------------------------c--------Ccccc--c------cCCceEEEEECCCCCE
Confidence 0 00000 0 2347889999998776
Q ss_pred EEEee-cCCeEEEeeccCCccCCCCceeeecCccccccCccccccc-cccCCCcCCCeeeeeecCCCcEEEEec--CCeE
Q 001343 779 LLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN-DVAGVNLEEAVPCIALSKNDSYVMSAT--GGKI 854 (1096)
Q Consensus 779 l~~~~-~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~-~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v 854 (1096)
++++. .++.|.+|++.... .+.. .+. +...+..++|+|||+++++++ +++|
T Consensus 294 ~~vs~~~~g~i~vvd~~~~~----------------------~l~~~~i~---~~~~~~~~~~spdg~~l~va~~~~~~v 348 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYKDID----------------------NLTVTSIG---AAPFLHDGGWDSSHRYFMTAANNSNKV 348 (543)
T ss_dssp EEEEETTTTEEEEEECTTSS----------------------SCEEEEEE---CCSSCCCEEECTTSCEEEEEEGGGTEE
T ss_pred EEEEECCCCeEEEEEecCCC----------------------cceeEEec---cCcCccCceECCCCCEEEEEecCCCeE
Confidence 65554 47899999874321 1110 111 345677899999999876655 6899
Q ss_pred EEEEcccceEEEeecC----CCCCeeEEEEecCCCcEEEEee-CCCeEEEEeeccceeeeeeccccccccceeeecCCCC
Q 001343 855 SLFNMMTFKVMTTFMS----PPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGK 929 (1096)
Q Consensus 855 ~iwd~~~~~~~~~~~~----h~~~i~~l~~s~~d~~~l~s~~-~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 929 (1096)
.+||..+++++..+.. |.+....+ ++|+++.+++++. .|++|.+|++.+.. ......++++.+.++
T Consensus 349 ~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~--------~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 349 AVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKN--------HPQYAWKKVAELQGQ 419 (543)
T ss_dssp EEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT--------CTTTBTSEEEEEECS
T ss_pred EEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCC--------CchhcCeEEEEEEcC
Confidence 9999999999988874 55444443 5773477777775 68999999998722 000112366777777
Q ss_pred CCCCCceEEEecCCcEEEEEe--------cceEEEEEcccceec-cccc-------cCCCCCCCceEEEEeeCCcEEEEE
Q 001343 930 TPTGDTRVQFNADQVRMLVVH--------ETQLAIYDASKMERI-RQWT-------PQDALSAPISCAVYSCNSQLVFAT 993 (1096)
Q Consensus 930 ~~~~v~~v~fs~dg~~l~~~~--------d~~i~iwd~~~~~~~-~~~~-------~~~~~~~~i~~l~~s~dg~~la~~ 993 (1096)
.. .+..++|+|||++|+++. +++|.|||+.++++. ..+. ..+ ...+..++|+|||++|+++
T Consensus 420 g~-~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 420 GG-GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG--AKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp CS-CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS--CCEEEEEEECSSSSEEEEE
T ss_pred CC-CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC--CCceEeccCCCCCCEEEEE
Confidence 65 788999999999999943 779999999999876 3321 222 6789999999999998876
Q ss_pred e-----cCCcEEEEecCCCceeEEEc
Q 001343 994 F-----CDGNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 994 ~-----~dg~i~vwd~~~~~~~~~~~ 1014 (1096)
. .|+.|.|||..++++...+.
T Consensus 497 ~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 497 VWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eecCCCCCCeEEEEECCCceEEEeec
Confidence 3 47999999999999887776
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-25 Score=234.23 Aligned_cols=284 Identities=14% Similarity=0.097 Sum_probs=195.7
Q ss_pred eEEEEEcCC-CCcEEEEEeCCCeEEEEecCCC---CeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 347 VISMDFHPS-HQTLLLVGSSNGEITLWELAMR---DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 347 V~~v~fsp~-g~~llasg~~dg~I~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
|.++-|-.- .+.+.++......|++|+..++ +.+++ +.+|+.+|..+.+.||..-|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECCSSCEEEECCCTTCCSCE
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------EeccCceeEEEEEcCccccee
Confidence 556666443 3334444456889999999998 44433 666777777777777643322
Q ss_pred -EEECCCeE-EEEEcc--CC-CccccceeecccccCEEEEEEecCCCcEEEEEEe--CCCcEEEEE--cCCceEEEeeCC
Q 001343 423 -VAFTKHLI-QLYSYA--GS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGH 493 (1096)
Q Consensus 423 -s~~~dg~i-~vwd~~--~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s--~d~~i~iwd--~~~~~~~~~~~~ 493 (1096)
++-.+=.+ .++-+. .. +.......-.+|...|..+ ++++ ++.+++ .|+.|++|+ .+|+.+..+.+|
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 22111111 111111 00 1111111123444445444 4554 444433 599999999 558888889999
Q ss_pred CCCeEEEEeee-cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC---cEEEEEEcCCCCEEEEEee--------ccC
Q 001343 494 EAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGT--------SKD 561 (1096)
Q Consensus 494 ~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~l~~~~~--------~~~ 561 (1096)
...+..++|++ .+++.+|++++.|++|++||+.+++.+..+..+.. .+.+++|+|+|.++++++. +..
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999998 67789999999999999999999999998876543 6778899999998865431 122
Q ss_pred CCCeEEEEeCCCCeeeEEE-----cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 562 GDSFLVEWNESEGTIKRTY-----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
.+++|++||..+++.+..+ .+|.. .+. ..+.++..+++++.|++|+|||+.+++.+.++.+|... .+..++
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~-vvs~va 333 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ-HWSFVK 333 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--C-CCCEEE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCcc-eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC-eEEEEE
Confidence 3899999999999988766 35544 232 33334788999999999999999999999999876541 344689
Q ss_pred EeCCCCEEEEEECCCcEEEEEc
Q 001343 637 FSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
|+|||++|++|+.|++|+|||+
T Consensus 334 fSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999985
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=260.82 Aligned_cols=248 Identities=6% Similarity=-0.074 Sum_probs=176.2
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC----
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---- 416 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---- 416 (1096)
..|...+....+++++. ++|+|+.|++|+|||+.+++..... ....+.+|.+.|++++|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~--------------~~~~~~gH~~~v~~v~~~p~~~~ 150 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQH--------------VLGGKSGHHNFVNDIDIADVYSA 150 (393)
T ss_dssp C----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEE--------------EECTTTSCSSCEEEEEEEEEECT
T ss_pred cccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceee--------------eecccCCCCCceEEEEEcccccc
Confidence 34556666666777776 7999999999999999988765321 1124789999999999998
Q ss_pred ----CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE--
Q 001343 417 ----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN-- 489 (1096)
Q Consensus 417 ----d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~-- 489 (1096)
|+++||+|+.|++|+|||+.++.... .+.+|...|.+++|+|++.. +|++|+.|++|++|| .+++....
T Consensus 151 ~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 151 DNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp TCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC------
T ss_pred ccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccccc
Confidence 89999999999999999998876555 46679999999999998864 799999999999999 66654322
Q ss_pred -----------------------eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEE-
Q 001343 490 -----------------------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML- 545 (1096)
Q Consensus 490 -----------------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~- 545 (1096)
..+|...+.++.|.+ +++..|++++.|+++++||+........+..+...+..+.
T Consensus 227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~ 305 (393)
T 4gq1_A 227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNL 305 (393)
T ss_dssp ----CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------CC
T ss_pred ccCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEE
Confidence 246778888998863 4778999999999999999987665554444433333332
Q ss_pred -----------------EcC-CCC-EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC
Q 001343 546 -----------------YSA-DGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1096)
Q Consensus 546 -----------------~s~-~~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1096)
+++ .+. ++++++. ++.|++||..+++....+.+|.. .|.+++|+|+|++|++++.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~----Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 306 LPNVQGISLFPSLLGACPHPRYMDYFATAHSQ----HGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp SCSEEEECSSCCSSCCEECSSCTTEEEEEETT----TTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESS
T ss_pred ccccccccccCcceeEEEccCCCCEEEEEECC----CCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCC
Confidence 222 233 4455554 89999999999999888888877 89999999999999999876
Q ss_pred CeEEEEeC
Q 001343 607 SQIKFWDM 614 (1096)
Q Consensus 607 g~i~iwd~ 614 (1096)
| +.+|.+
T Consensus 381 G-v~lvrL 387 (393)
T 4gq1_A 381 S-VLLTRL 387 (393)
T ss_dssp E-EEEEEE
T ss_pred C-eEEEEE
Confidence 5 556654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-24 Score=248.80 Aligned_cols=275 Identities=10% Similarity=0.079 Sum_probs=217.9
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc-cCCCCEEEEEEcCCCCEEEEEECCCe
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAFTKHL 429 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spd~~~l~s~~~dg~ 429 (1096)
+|+|++. ++++++.|++|.+||..+++.+.. +. ++. +.+++|+|||++|++++.|+.
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3889987 799999999999999999988753 33 333 889999999999999999999
Q ss_pred EEEEEc--cCCCccccceeecccccCEEEEEEec----CCCcEEEEEEe-CCCcEEEEE-cCCceEEEeeCC--------
Q 001343 430 IQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAY----PNKLLCVVTCG-DDKLIKVWE-LSGRKLFNFEGH-------- 493 (1096)
Q Consensus 430 i~vwd~--~~~~~~~~~~~l~~h~~~v~~l~~s~----d~~~~~l~s~s-~d~~i~iwd-~~~~~~~~~~~~-------- 493 (1096)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+|| .+++++..+..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7776655 344 455689999999 999 676666 589999999 899998887642
Q ss_pred --C-CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 494 --E-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 494 --~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
. ..+.++.+++.. ..++++...++.|.+||+.+.+... ....+...+..++|+|+|+++++++. .++.|.+|
T Consensus 276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~---~~~~v~v~ 351 (543)
T 1nir_A 276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAAN---NSNKVAVI 351 (543)
T ss_dssp EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEG---GGTEEEEE
T ss_pred cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEec---CCCeEEEE
Confidence 2 368889987753 3577788889999999998765543 12234556888999999998877653 27899999
Q ss_pred eCCCCeeeEEEcC----cCccceEEEEEeCC-CCEEEEEE-cCCeEEEEeCCC-------CeEEEEeecCCCCCCccEEE
Q 001343 570 NESEGTIKRTYAG----FRKKSNGVVQFDTT-QNHFLAVG-EDSQIKFWDMDN-------VNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 570 d~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~ 636 (1096)
|..+++++..+.. |....+ .+ ++|+ +..++++. .|++|.+||+.+ .+.++.+..++. .+..++
T Consensus 352 D~~tg~l~~~i~~g~~ph~g~g~-~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v~ 427 (543)
T 1nir_A 352 DSKDRRLSALVDVGKTPHPGRGA-NF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIK 427 (543)
T ss_dssp ETTTTEEEEEEECSSSBCCTTCE-EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEE
T ss_pred ECCCCeEEEeeccCCCCCCCCCc-cc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEEE
Confidence 9999999998875 332122 22 5777 44555554 589999999998 889999998765 678899
Q ss_pred EeCCCCEEEEEE-------CCCcEEEEEcCCC
Q 001343 637 FSKEGNLLAVTT-------ADNGFKILANAIG 661 (1096)
Q Consensus 637 ~s~~~~~l~~~~-------~dg~i~iwd~~~~ 661 (1096)
++|+++.|++++ .+++|.+||+.++
T Consensus 428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp CCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred cCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 999999999987 2679999999877
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-24 Score=243.18 Aligned_cols=304 Identities=9% Similarity=0.014 Sum_probs=232.3
Q ss_pred CceEEEEEcCCCCcEEEEEe----CCC----eEEEEec--CCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGS----SNG----EITLWEL--AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~----~dg----~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
..|...+|++.|..++++|+ .|| .|+|||+ .+++.+... .+.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHHH
Confidence 47888899999988888886 467 9999999 888876431 15567666776666
Q ss_pred cC--------------CCCEEEEEECC------CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC
Q 001343 415 SP--------------DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1096)
Q Consensus 415 sp--------------d~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d 474 (1096)
++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 64 26677766654 799999998543 33 5778999999999999999 88998887
Q ss_pred C---cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEE-EEECCCe--EEEEEcCCCCeeeEEeCCCCcEEEEEEc
Q 001343 475 K---LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-STAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYS 547 (1096)
Q Consensus 475 ~---~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s 547 (1096)
+ .|++|| .+++.. .+..|...+.+++|+| +|+.|+ +++.+|. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 999999 666654 6777888999999977 667776 6666654 99999987665 4566677789999999
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC---CeEEEEeCCCCeEEEEee
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 624 (1096)
|||+.|++++. .++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ ..|++||+.+++... +.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ec
Confidence 99999998873 223448999999888743 3444443 67789999999999988764 589999999887743 33
Q ss_pred cCCCCCCccEEEEeCCCCEEEEEECCC---cEEEEEcCCCccccccccCCCcccccCcceeEEeecCC
Q 001343 625 AEGGLPNLPRLRFSKEGNLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1096)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 689 (1096)
.+. .+.+++|+|+|++|++++.++ .|++||+..+ ....+..+. ..|.+++|+|.-
T Consensus 352 ~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~-----~~v~~~~~~~~~ 409 (415)
T 2hqs_A 352 STF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATD-----GQVKFPAWSPYL 409 (415)
T ss_dssp CSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSS-----SEEEEEEECCCC
T ss_pred CCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCC-----CCCcCCcccccc
Confidence 332 689999999999999998877 7999998644 344555543 347788998764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-23 Score=253.30 Aligned_cols=334 Identities=12% Similarity=0.067 Sum_probs=231.2
Q ss_pred CCceEEEEEcCCCCcEEEEEeC-CC-----eEEEEecCCCCeeecccceeec-----ccccCccccccccccCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSS-NG-----EITLWELAMRDRLVSKPFKIWD-----MAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~-dg-----~I~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
...|.+++|||||+ +||+++. |+ .|.+||+.+++........... +.......+...-......|.++
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 45799999999999 5888777 88 9999999998765321000000 00000000000000001348899
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCC--ccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 489 (1096)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|+|||+ .|+.++ ++.|++|| .+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 899999999872 233 3667888999999999999 788777 56999999 66655544
Q ss_pred eeCCCCC----------------eEEEEeeecCCCcEEEEEECCC---------------------------------eE
Q 001343 490 FEGHEAP----------------VYSICPHHKENIQFIFSTAIDG---------------------------------KI 520 (1096)
Q Consensus 490 ~~~~~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i 520 (1096)
...+... +.+++|+| ||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4434332 36788876 778898887765 78
Q ss_pred EEEEcCC-CCeeeEEe--CCCCcEEEEEEcCCCCEEEEEeec-cCCCCeEEEEeCCCCeeeEEEcCcCcc---ceEEEEE
Q 001343 521 KAWLYDT-MGSRVDYD--APGHWCTTMLYSADGSRLFSCGTS-KDGDSFLVEWNESEGTIKRTYAGFRKK---SNGVVQF 593 (1096)
Q Consensus 521 ~iwd~~~-~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~ 593 (1096)
.+||+.+ ++...... .+...+..++| |||+.|+++..+ ...+..|++||+.+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 8899887 66544332 35568999999 999999977642 223678999999999888777665432 2346899
Q ss_pred eCCCCEEEEEEcCCeEEEEeCC-CCeEEEEeecCCCCCCccEE-EEeCCCCEEEEEE-CCC--cEEEEEcCCCccccccc
Q 001343 594 DTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTT-ADN--GFKILANAIGLRSLRAV 668 (1096)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~ 668 (1096)
+|+|+++++++.+|.+.+|.++ .+. ...+..+.. .+..+ .|+|+++.|+..+ .++ .+++|++.........+
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~--~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l 421 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNW--SVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL 421 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSS--CEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecce--EEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec
Confidence 9999988888889977777765 344 555554433 67777 5999998776554 454 89999986532333344
Q ss_pred cCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 669 ENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 669 ~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
.. ...+..++|+|||+.++...+
T Consensus 422 ~~------~~~~~~~~~spdg~~l~~~~~ 444 (741)
T 2ecf_A 422 SK------APGMHSASFARNASVYVDSWS 444 (741)
T ss_dssp CC------SCSEEEEEECTTSSEEEEEEE
T ss_pred cc------CCCceEEEECCCCCEEEEEec
Confidence 33 123567899999999865543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=255.72 Aligned_cols=321 Identities=9% Similarity=0.076 Sum_probs=227.8
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCC---CEEEEEEcCCCCEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVG 422 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spd~~~l~ 422 (1096)
.+.+++|+|||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++|+
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 467899999999 5776 6899999999999876532 444543 499999999999999
Q ss_pred EEECC---------CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC
Q 001343 423 VAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1096)
Q Consensus 423 s~~~d---------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 492 (1096)
+++.+ +.|.+||+.+++. +.+....+|...+..++|+|||+ .|+.++. +.|++|| .+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7888999999875 32223345666699999999999 6787775 8999999 67776665555
Q ss_pred CCCCe------------------EEEEeeecCCCcEEEEEECCC----------------------------------eE
Q 001343 493 HEAPV------------------YSICPHHKENIQFIFSTAIDG----------------------------------KI 520 (1096)
Q Consensus 493 ~~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 520 (1096)
+...+ .+++|+| ||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 6788876 778898887553 79
Q ss_pred EEEEcCCCCeeeEEeCC------CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccce----EE
Q 001343 521 KAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN----GV 590 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i----~~ 590 (1096)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999887755555543 457899999999998877654333457899999999988776654432222 26
Q ss_pred EEEeCCCCEEEEE--EcCC------eEEEEe-CCCCeE--EEEeecCCCCCCccE-EEEeCCCCEEEEEECC---CcEEE
Q 001343 591 VQFDTTQNHFLAV--GEDS------QIKFWD-MDNVNI--LTSTDAEGGLPNLPR-LRFSKEGNLLAVTTAD---NGFKI 655 (1096)
Q Consensus 591 ~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d---g~i~i 655 (1096)
++|+|+|+.|+.. ..++ .|++|| ..++.. ...+.... ..+.. ++|+|+|+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999977754 4666 577777 344441 33333221 13444 6999999999877665 78999
Q ss_pred EEcCCCcc-ccccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 656 LANAIGLR-SLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 656 wd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
|++..... ....+.... .....+..++|+|+|+.++...+
T Consensus 389 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCDL--VENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEECSSTTCCCBCSSTTS--SSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEeCCCCCCcceecccc--cCCCCeEEEEECCCCCEEEEEcc
Confidence 99865421 222222100 01233667999999999866544
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-22 Score=227.93 Aligned_cols=278 Identities=11% Similarity=0.073 Sum_probs=210.7
Q ss_pred eeec--CCCCcceEEeec-CCCceEEEEEcCC--------------CCcEEEEEeC--C---CeEEEEecCCCCeeeccc
Q 001343 327 TWSL--DDLPRTVAVSLH-QGSTVISMDFHPS--------------HQTLLLVGSS--N---GEITLWELAMRDRLVSKP 384 (1096)
Q Consensus 327 ~~~~--~~~~~~~~~~l~-h~~~V~~v~fsp~--------------g~~llasg~~--d---g~I~iwd~~~~~~~~~~~ 384 (1096)
+|++ ..........+. |...+.++++++. +.++++++.. + +.|++||+..+.. .
T Consensus 97 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~--- 172 (415)
T 2hqs_A 97 LVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-F--- 172 (415)
T ss_dssp EEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-E---
T ss_pred EEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-E---
Confidence 8888 544322223444 8888999988861 4544444432 2 7999999975432 2
Q ss_pred ceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCC---eEEEEEccCCCccccceeecccccCEEEEEEec
Q 001343 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH---LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (1096)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~ 461 (1096)
.+.+|...|.+++|||||++|++++.++ .|++||+.+++.. .+..|.+.+.+++|+|
T Consensus 173 ----------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----~l~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 173 ----------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSP 232 (415)
T ss_dssp ----------------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECT
T ss_pred ----------------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----EeecCCCcccCEEEcC
Confidence 2667889999999999999999999875 9999999988654 3667888999999999
Q ss_pred CCCcEEEE-EEeCCCc--EEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CC--eEEEEEcCCCCeeeEE
Q 001343 462 PNKLLCVV-TCGDDKL--IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDY 534 (1096)
Q Consensus 462 d~~~~~l~-s~s~d~~--i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~ 534 (1096)
||+ .|+ +++.|+. |++|| .+++ ...+..|...+.+++|+| +|++|++++. ++ .|.+||+.+++. ..+
T Consensus 233 dg~--~la~~~~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~sp--dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l 306 (415)
T 2hqs_A 233 DGS--KLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFP--DSQNLAFTSDQAGRPQVYKVNINGGAP-QRI 306 (415)
T ss_dssp TSS--EEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCC-EEC
T ss_pred CCC--EEEEEEecCCCceEEEEECCCCC-EEeCcCCCCcccceEECC--CCCEEEEEECCCCCcEEEEEECCCCCE-EEE
Confidence 999 565 6766655 99999 5554 467888889999999977 6788888776 45 677778876653 344
Q ss_pred eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC---eEEE
Q 001343 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKF 611 (1096)
Q Consensus 535 ~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i 611 (1096)
..+...+.+++|+|+|++|++++.+ +++..|++||+.+++.. .+..+. .+..++|+|+|+.|++++.++ .|++
T Consensus 307 ~~~~~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~ 382 (415)
T 2hqs_A 307 TWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNL 382 (415)
T ss_dssp CCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCEE-ECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred ecCCCcccCeEECCCCCEEEEEECc-CCceEEEEEECCCCCEE-EecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEE
Confidence 5566789999999999999988752 22468999999988774 444443 688899999999999988776 7999
Q ss_pred EeCCCCeEEEEeecCCCCCCccEEEEeCCC
Q 001343 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
||+.. .....+..+.. .|.+++|+|..
T Consensus 383 ~d~~g-~~~~~l~~~~~--~v~~~~~~~~~ 409 (415)
T 2hqs_A 383 VSTDG-RFKARLPATDG--QVKFPAWSPYL 409 (415)
T ss_dssp EETTS-CCEEECCCSSS--EEEEEEECCCC
T ss_pred EECCC-CcEEEeeCCCC--CCcCCcccccc
Confidence 99874 45556665544 89999999964
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-22 Score=244.95 Aligned_cols=328 Identities=10% Similarity=0.033 Sum_probs=234.3
Q ss_pred CCCEEEEEEcCCCCEEEEEEC-CC-----eEEEEEccCCCccccceeecccc------------------------cCEE
Q 001343 406 PISVSRVAWSPDGNYVGVAFT-KH-----LIQLYSYAGSNDLRQHSQIDAHV------------------------GAVN 455 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~-dg-----~i~vwd~~~~~~~~~~~~l~~h~------------------------~~v~ 455 (1096)
...|.+++|||||++|++++. |+ .|++||+.+++.... +..+. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL---VDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE---ECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc---cchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 899999999875442 22232 3378
Q ss_pred EEEEecCCCcEEEEEEeCCCcEEEEE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee
Q 001343 456 DLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (1096)
Q Consensus 456 ~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 532 (1096)
+++|+|||+ .|++++. +.|++|| .++. .+..+..|...+.+++|+| ||++|++++ ++.|++||+.+++...
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 7888775 9999999 5552 5667778888999999977 778888887 5699999998765544
Q ss_pred EEeCCCCc----------------EEEEEEcCCCCEEEEEeeccC-----------------------------CCCeEE
Q 001343 533 DYDAPGHW----------------CTTMLYSADGSRLFSCGTSKD-----------------------------GDSFLV 567 (1096)
Q Consensus 533 ~~~~~~~~----------------i~~l~~s~~~~~l~~~~~~~~-----------------------------~~~~i~ 567 (1096)
....+... +.+++|||||++|++++.+.. ....|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333222 477999999999998875221 011789
Q ss_pred EEeCCC-CeeeEEEcC-cCccceEEEEEeCCCCEEEEEEc-----CCeEEEEeCCCCeEEEEeecCCCC--CCccEEEEe
Q 001343 568 EWNESE-GTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGE-----DSQIKFWDMDNVNILTSTDAEGGL--PNLPRLRFS 638 (1096)
Q Consensus 568 iwd~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~s 638 (1096)
+||+.+ ++....... .....+..++| |+|+.|++++. +..|++||+.+++....+..+... ..+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 876554433 12337888999 99999988764 568999999999887766544321 135689999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeE-EeecCCCeEEecCCCCceeEeccCCCcCCCcccC
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV-ALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~ 717 (1096)
|||+++++++.||.++||.+..... ...+..+. ..+..+ .|+|+|+.++..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~-----~~v~~~~~~s~dg~~l~~~---------------------- 397 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN-----WSVDELLAVDEKAGLAYFR---------------------- 397 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS-----SCEEEEEEEETTTTEEEEE----------------------
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc-----eEEEeEeEEeCCCCEEEEE----------------------
Confidence 9999999999999888888753223 44444432 234455 588888766322
Q ss_pred CCCccCCCCCCccccCCCC--CccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecC----CeEEEe
Q 001343 718 VDPTSRSMDKPRTVDDVTD--KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN----GVQKLW 791 (1096)
Q Consensus 718 ~~~~~s~d~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d----g~v~vw 791 (1096)
++.++ .+++|++.. .......+. ....+..++|+|||+.++....+ ..+.+|
T Consensus 398 --------------~~~~~~~~~~l~~~~~--~g~~~~~l~------~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 398 --------------AGIESARESQIYAVPL--QGGQPQRLS------KAPGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp --------------ECSSCTTCBEEEEEET--TCCCCEECC------CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred --------------EeCCCCceEEEEEEEc--CCCCeeecc------cCCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 22334 788999862 122223322 24467899999999988777654 456676
Q ss_pred ec
Q 001343 792 KW 793 (1096)
Q Consensus 792 ~~ 793 (1096)
+.
T Consensus 456 ~~ 457 (741)
T 2ecf_A 456 RA 457 (741)
T ss_dssp ET
T ss_pred Ec
Confidence 65
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-21 Score=210.21 Aligned_cols=279 Identities=10% Similarity=0.046 Sum_probs=204.8
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC-CC
Q 001343 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-KH 428 (1096)
Q Consensus 350 v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~-dg 428 (1096)
..|.+++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 456777777788999999999999999987643 23345556 9999999998777766 88
Q ss_pred eEEEEEccCCCc-cccceeecccccCEEEEEEecCCCcEEEEEEeCCC---cEEEEE-cCCceEEEeeCCCCCeEEEEee
Q 001343 429 LIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK---LIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 429 ~i~vwd~~~~~~-~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~---~i~iwd-~~~~~~~~~~~~~~~v~~~~~~ 503 (1096)
.|.+||..+++. .. .+..+..+..+++|+|+++ +++++..++ .|.+|| .+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999876 33 3555666666699999999 677555443 899999 788887777654 446899997
Q ss_pred ecCCCcEE-EEEECCCe-EEEEEcCCCCeee----EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee-
Q 001343 504 HKENIQFI-FSTAIDGK-IKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI- 576 (1096)
Q Consensus 504 ~~~~~~~l-~s~~~dg~-i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~- 576 (1096)
| +|+++ ++...++. |.+|+++...... ........+..++|+|+|+++++++. .++.|.+||+.+++.
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 7 55544 45566688 9999998655432 22233456899999999997776653 278999999999888
Q ss_pred --eEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeE--EEEeecC--CCCC---CccEEEEeCCCCEEEE
Q 001343 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI--LTSTDAE--GGLP---NLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 577 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~---~v~~~~~s~~~~~l~~ 646 (1096)
+..+.... .+..++|+|+|++++++. .++.|.+||..+++. +..+... .... ....++|+|++++|++
T Consensus 212 ~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 289 (331)
T 3u4y_A 212 TLLNAVGTNN--LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI 289 (331)
T ss_dssp EEEEEEECSS--CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred ceeeeccCCC--CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence 77776542 456799999999877665 577899999999887 4443322 1111 2245899999998876
Q ss_pred EEC-CCcEEEEEcCCC
Q 001343 647 TTA-DNGFKILANAIG 661 (1096)
Q Consensus 647 ~~~-dg~i~iwd~~~~ 661 (1096)
++. ++.|.+||+...
T Consensus 290 ~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 290 SANISRELKVFTISGK 305 (331)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred ecCCCCcEEEEEecCC
Confidence 665 569999999765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-20 Score=207.71 Aligned_cols=273 Identities=11% Similarity=0.096 Sum_probs=213.7
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeC-------CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSS-------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
.....+..++|+|+|++ +++++. ++.|.+||..+++.+.. +. ....+..++|
T Consensus 38 ~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~~ 96 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENA-LWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGATI 96 (353)
T ss_dssp EEESSEEEEEEETTTTE-EEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEEE
T ss_pred hhccCccceEECCCCCE-EEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEEE
Confidence 34567899999999995 455442 67899999999887643 11 2234678999
Q ss_pred cCCCCEEEEE-ECCCeEEEEEccCCCccccceeeccccc---------CEEEEEEecCCCcEEEEEEe--CCCcEEEEE-
Q 001343 415 SPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVG---------AVNDLAFAYPNKLLCVVTCG--DDKLIKVWE- 481 (1096)
Q Consensus 415 spd~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~l~~h~~---------~v~~l~~s~d~~~~~l~s~s--~d~~i~iwd- 481 (1096)
+|+|++++++ ..++.|.+||..+++.... +..+.. .+.+++|+|+++ .+++++ .++.|.+||
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDG 171 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEET
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcC
Confidence 9999976655 4478999999999876653 333322 278999999999 444443 588999999
Q ss_pred cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC----CCCcEEEEEEcCCCCEEEEEe
Q 001343 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA----PGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
.+++.+..+..+...+.+++|++ +++++++++.++.|.+||..+++....+.. +...+..++|+|++++++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 172 GNIKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD 249 (353)
T ss_dssp TTTEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCCceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence 88888888876666688888876 668899999999999999998887766654 444688899999999888776
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
. .++.|.+||..+++.+..+..... ..++|+|++++++++. .++.|.+||..+++.+..+.... .+.+++
T Consensus 250 ~---~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 320 (353)
T 3vgz_A 250 S---KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLA 320 (353)
T ss_dssp S---SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEE
T ss_pred C---CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEE
Confidence 4 268999999999999888876432 3589999999777666 68999999999999988887643 578999
Q ss_pred EeCCCCEEEEEECCC
Q 001343 637 FSKEGNLLAVTTADN 651 (1096)
Q Consensus 637 ~s~~~~~l~~~~~dg 651 (1096)
|+|+|++++++..++
T Consensus 321 ~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 321 LSADGKTLYVSVKQK 335 (353)
T ss_dssp ECTTSCEEEEEEECC
T ss_pred EcCCCCEEEEEEccc
Confidence 999999887776653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=231.20 Aligned_cols=237 Identities=10% Similarity=-0.002 Sum_probs=166.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEccCCCcc-ccceeecccc-----------------cCEEEEEEecCCCcEEEEE
Q 001343 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHV-----------------GAVNDLAFAYPNKLLCVVT 470 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~l~~h~-----------------~~v~~l~~s~d~~~~~l~s 470 (1096)
+..+.|+ |+.+++++.++ | +||+.+++.+ .. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4557888 66777777787 8 9999998763 32 22232 56999999999 5 4444
Q ss_pred EeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-----CCeeeEEeCCCCc-----
Q 001343 471 CGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHW----- 540 (1096)
Q Consensus 471 ~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~----- 540 (1096)
+. |+.|++||..+.....+..+...+.+++|+| ||+.|+++ .++.|++||+.+ ++.......+...
T Consensus 98 ~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTYLFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp EE-TTEEEEEETTTTEEEEEECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred EE-CCEEEEEECCCCceEEccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 43 6999999943334455566777888999977 67888884 689999999988 6554433333222
Q ss_pred ---------EEEEEEcCCCCEEEEEeecc-----------------------------CCCCeEEEEeCCCCeeeEEEcC
Q 001343 541 ---------CTTMLYSADGSRLFSCGTSK-----------------------------DGDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 541 ---------i~~l~~s~~~~~l~~~~~~~-----------------------------~~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
+.++.|+|||++|++++.+. ..+..|++||+.+++.......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 47899999999999887321 1357899999999887655432
Q ss_pred -cCccceEEEEEeCCCCEEEEEEcCC-----eEEEEeCCCCeEEEEee-cCC--CCCCccEEEEeC--CCCEEEEEECCC
Q 001343 583 -FRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTD-AEG--GLPNLPRLRFSK--EGNLLAVTTADN 651 (1096)
Q Consensus 583 -~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~~~~s~--~~~~l~~~~~dg 651 (1096)
.....+..++|+|+|+.|++++.++ .|++||+.+++....+. ... ....+..++|+| +|++++++..|+
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 1223688899999999999988765 89999999983333332 111 111346789999 999999888899
Q ss_pred cEEEEEcC
Q 001343 652 GFKILANA 659 (1096)
Q Consensus 652 ~i~iwd~~ 659 (1096)
.+++|.+.
T Consensus 334 ~~~l~~~~ 341 (706)
T 2z3z_A 334 WNHLYLYD 341 (706)
T ss_dssp SCEEEEEE
T ss_pred ccEEEEEE
Confidence 88888764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=232.63 Aligned_cols=233 Identities=11% Similarity=-0.003 Sum_probs=173.4
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeeccccc---CEEEEEEecCCCcEEEEEEeCC---------C
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDD---------K 475 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~---~v~~l~~s~d~~~~~l~s~s~d---------~ 475 (1096)
.+.+++|+|||+++++ +.||+|++||+.+++... .+.+|.. .|.+++|+|||+ +|++++.+ +
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~---~~~~~~~~~~~v~~~~~SpDg~--~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCCS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE---EeccccccccccceEEECCCCC--EEEEEecCccceeeccee
Confidence 4678999999998876 789999999999987654 3555554 499999999999 78888764 7
Q ss_pred cEEEEE-cCCceEEEee---CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCc-----------
Q 001343 476 LIKVWE-LSGRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW----------- 540 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------- 540 (1096)
.+++|| .+++. ..+. +|...+..++|+| ||+.|+.++. +.|++||+.+++.......+...
T Consensus 92 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 92 YYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp EEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS--STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred eEEEEECCCCce-EeccCCccccccccccEECC--CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence 888999 66655 3443 4455588899977 6788888876 89999999887766555443332
Q ss_pred -------EEEEEEcCCCCEEEEEeeccC------------------------------CCCeEEEEeCCCCeeeEEEcCc
Q 001343 541 -------CTTMLYSADGSRLFSCGTSKD------------------------------GDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 541 -------i~~l~~s~~~~~l~~~~~~~~------------------------------~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
+.+++|||||+.|++++.+.. .+..|++||+.+++....+..+
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 278999999999998875320 0227999999998876666654
Q ss_pred C-----ccceEEEEEeCCCCEEEEEEc----CCeEEEEeCCCCeEEEEeecCCCCCCc----cEEEEeCCCCEEEEE--E
Q 001343 584 R-----KKSNGVVQFDTTQNHFLAVGE----DSQIKFWDMDNVNILTSTDAEGGLPNL----PRLRFSKEGNLLAVT--T 648 (1096)
Q Consensus 584 ~-----~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~--~ 648 (1096)
. ...+..++|+|||+++++... +..|++||+.+++....+..+.. ..+ ..++|+|||+.|+.. .
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE-AWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS-SCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC-CEEeccCCCceEcCCCCeEEEEEec
Confidence 2 336788999999998877653 35799999999887766543211 122 378999999977754 4
Q ss_pred CCC
Q 001343 649 ADN 651 (1096)
Q Consensus 649 ~dg 651 (1096)
.++
T Consensus 327 ~~~ 329 (723)
T 1xfd_A 327 PQG 329 (723)
T ss_dssp CCS
T ss_pred ccC
Confidence 566
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=204.93 Aligned_cols=257 Identities=17% Similarity=0.162 Sum_probs=192.1
Q ss_pred EEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccC-CCc
Q 001343 362 VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG-SND 440 (1096)
Q Consensus 362 sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~-~~~ 440 (1096)
.++.|+.|.+||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34578999999999887543 445788999999999999999987 78999999998 765
Q ss_pred cccceeeccc-ccCEEEEEEecCCCcEEEEEEe--CCCcEEEEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEE-EE
Q 001343 441 LRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-ST 514 (1096)
Q Consensus 441 ~~~~~~l~~h-~~~v~~l~~s~d~~~~~l~s~s--~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~ 514 (1096)
.. ...+| ...+.+++|+|+++ .|++++ .++.+.||. ..+.....+..+. .+..++|+| +++.|+ ++
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~ 147 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSP--DGKSFTYCG 147 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECT--TSSEEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECC--CCCEEEEEE
Confidence 44 23344 47889999999999 788887 345556665 4444555555444 488888876 556666 78
Q ss_pred ECCCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC-CCeeeEEEcCcCccceEEEE
Q 001343 515 AIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQ 592 (1096)
Q Consensus 515 ~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~ 592 (1096)
+.++.+++|+++.. .....+..+...+.+++|+|+++.+++++. .++.+.+|++. .+.....+..+.. .+..++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ 223 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFPH 223 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCeE
Confidence 89999999997543 334455566678999999999998887653 15667777765 4555666666654 788899
Q ss_pred EeCCCCEEEEEEcC-----------CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCC
Q 001343 593 FDTTQNHFLAVGED-----------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1096)
Q Consensus 593 ~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1096)
|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+++.|++++.+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999888765 569999999887644443222233789999999999998887653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=231.83 Aligned_cols=320 Identities=9% Similarity=0.052 Sum_probs=208.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCee-ecccceeecccccCcc--ccccccccCCCCEEEEEEcCCCCEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLP--FQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
.+..+.|+ |.. +++++.|+ | +||+.+++.+ .. +.+....... ........+...|.+++|||| ++++
T Consensus 27 ~~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~----l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~ 96 (706)
T 2z3z_A 27 YVVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTT----RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVV 96 (706)
T ss_dssp -CTTCEEE--TTE-EEEEETTE-E-EEEC-------CE----EEEHHHHHTTC-----------CCCEEEEETTT-TEEE
T ss_pred cCCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEE----eechhHhhhhccchhccccccccCceeEEECCC-CeEE
Confidence 35567787 553 55566677 8 9999998762 11 0000000000 000000112357999999999 6666
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC-----CceEEEeeCCCCC
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS-----GRKLFNFEGHEAP 496 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~-----~~~~~~~~~~~~~ 496 (1096)
.+. ++.|++||+.+++... +..+...+.+++|+|||+ .|+++ .|+.|++|| .+ ++.......+...
T Consensus 97 ~~~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~ 168 (706)
T 2z3z_A 97 LFT-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET 168 (706)
T ss_dssp EEE-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT
T ss_pred EEE-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC
Confidence 664 5999999998875433 455777899999999999 67774 689999999 66 6665544444433
Q ss_pred --------------eEEEEeeecCCCcEEEEEE---------------------------------CCCeEEEEEcCCCC
Q 001343 497 --------------VYSICPHHKENIQFIFSTA---------------------------------IDGKIKAWLYDTMG 529 (1096)
Q Consensus 497 --------------v~~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~ 529 (1096)
+.+++|+| ||++|++++ .++.|.+||+.+++
T Consensus 169 ~~~g~~~~~ee~~~~~~~~~Sp--Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 169 LVYGQAVHQREFGIEKGTFWSP--KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp EEESSCCGGGCTTCCCSEEECT--TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred eEcccchhhhhcCCCceEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 47888876 778999887 45789999998776
Q ss_pred eeeEEe--CCCCcEEEEEEcCCCCEEEEEeecc-CCCCeEEEEeCCCCeeeEEEc-CcCcc---ceEEEEEeC--CCCEE
Q 001343 530 SRVDYD--APGHWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEGTIKRTYA-GFRKK---SNGVVQFDT--TQNHF 600 (1096)
Q Consensus 530 ~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~-~~~~~---~i~~~~~~~--~~~~l 600 (1096)
...... .+...+.+++|+|||+.|++++.+. .....|++||+.+++....+. ..... .+..+.|+| +|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l 326 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI 326 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEE
Confidence 544332 3456799999999999999877521 112489999999984333332 22211 234578999 99999
Q ss_pred EEEEcCCeEEEEeCC-CCeEEEEeecCCCCCCccE-EEEeCCCCEEEEEECC-C----cEEEEEcCCCccccccccCCCc
Q 001343 601 LAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPR-LRFSKEGNLLAVTTAD-N----GFKILANAIGLRSLRAVENPPF 673 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d-g----~i~iwd~~~~~~~~~~~~~~~~ 673 (1096)
++++.++.+++|.++ ++..+..+..+.. .+.. ++|+|+++.|+.++.+ + .|..|++.++. ...+. +
T Consensus 327 ~~~~~~g~~~l~~~~~~~~~~~~l~~~~~--~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~-~-- 399 (706)
T 2z3z_A 327 WQSRRDGWNHLYLYDTTGRLIRQVTKGEW--EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDLT-P-- 399 (706)
T ss_dssp EEECTTSSCEEEEEETTSCEEEECCCSSS--CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEESC-C--
T ss_pred EEEccCCccEEEEEECCCCEEEecCCCCe--EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceecc-C--
Confidence 989899999999876 5666666655432 5666 7999999888766654 3 56666766552 22222 1
Q ss_pred ccccCcceeEEeecCCCeEEec
Q 001343 674 EALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 674 ~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
...+..++|+|+|++++..
T Consensus 400 ---~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 400 ---ESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp ---SSSEEEEEECTTSSEEEEE
T ss_pred ---CCceEEEEECCCCCEEEEE
Confidence 2236678999999887544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-19 Score=200.60 Aligned_cols=298 Identities=14% Similarity=0.140 Sum_probs=200.9
Q ss_pred CcEEEEEeCCCeEEEEecCC-CCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC-CeEEEEE
Q 001343 357 QTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK-HLIQLYS 434 (1096)
Q Consensus 357 ~~llasg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d-g~i~vwd 434 (1096)
++++++++.|+.|.+|++.. ++.... ....|...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 34566668899999999953 332110 022366789999999999999999887 9999999
Q ss_pred cc--CCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEEE-cCCc---eEEEeeCCCCCeEEEEeeecCC
Q 001343 435 YA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGR---KLFNFEGHEAPVYSICPHHKEN 507 (1096)
Q Consensus 435 ~~--~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~~~~---~~~~~~~~~~~v~~~~~~~~~~ 507 (1096)
++ +++. .....+..+. .+..++|+|+++ .|++++ .++.|.+|| .++. .+..+.. ...+.+++|+| +
T Consensus 67 ~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~--d 139 (343)
T 1ri6_A 67 IAPDDGAL-TFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP--D 139 (343)
T ss_dssp ECTTTCCE-EEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT--T
T ss_pred ecCCCCce-eeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC--C
Confidence 98 5442 2222343333 789999999999 555554 588999999 4332 3334443 34588888876 6
Q ss_pred CcEEEEEE-CCCeEEEEEcCC-CCeee----EEeC-CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC--CCee--
Q 001343 508 IQFIFSTA-IDGKIKAWLYDT-MGSRV----DYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTI-- 576 (1096)
Q Consensus 508 ~~~l~s~~-~dg~i~iwd~~~-~~~~~----~~~~-~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~--~~~~-- 576 (1096)
++++++++ .++.|++||+.+ +.... .... ....+..++|+|+++++++++. .++.+.+|++. +++.
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 67777777 899999999987 43322 2222 3447889999999998876652 27899999995 3433
Q ss_pred eEEEcCcC-----ccceEEEEEeCCCCEEEEEE-cCCeEEEEeCC--CC--eEEEEeecCCCCCCccEEEEeCCCCEEEE
Q 001343 577 KRTYAGFR-----KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMD--NV--NILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 577 ~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
...+.... ...+..++|+|++++++++. .++.|.+|++. ++ +.+..+.... .+..++|+|++++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 23332111 12455799999999887655 78999999998 33 3444444332 4789999999998888
Q ss_pred EE-CCCcEEEEEcC--CCc-cccccccCCCcccccCcceeEEeecCCCe
Q 001343 647 TT-ADNGFKILANA--IGL-RSLRAVENPPFEALRTPIESVALKVSASS 691 (1096)
Q Consensus 647 ~~-~dg~i~iwd~~--~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 691 (1096)
++ .++.|.+|++. ++. +.+..+.. ...+..++|.++.+.
T Consensus 294 ~~~~~~~v~v~~~d~~~g~~~~~~~~~~------g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 294 AGQKSHHISVYEIVGEQGLLHEKGRYAV------GQGPMWVVVNAHEGG 336 (343)
T ss_dssp ECTTTCEEEEEEEETTTTEEEEEEEEEC------SSSCCEEEEEEEC--
T ss_pred ecCCCCeEEEEEEcCCCceeeEcccccc------CCCCeeEEEEcccCC
Confidence 88 58999999654 441 12222221 123456777766543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-19 Score=193.30 Aligned_cols=275 Identities=11% Similarity=0.067 Sum_probs=198.9
Q ss_pred CcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee-eEEEcCcCcc
Q 001343 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKK 586 (1096)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~ 586 (1096)
+..+++++.++.|.+||..+++.......+...+ .++|+|+|+++++++. +++.|++||..+++. ...+..+..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~- 84 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSD---FCQTLVQIETQLEPPKVVAIQEGQS- 84 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEES---TTCEEEEEECSSSSCEEEEEEECSS-
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeC---CCCeEEEEECCCCceeEEecccCCC-
Confidence 3567888899999999999998887777666667 9999999998877764 367999999999987 666665544
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEE-EECCCc-EEEEEcCCC
Q 001343 587 SNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV-TTADNG-FKILANAIG 661 (1096)
Q Consensus 587 ~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~-i~iwd~~~~ 661 (1096)
+..+++|+|++++++++..++ .|.+||+.+++.+..+.... ...+++|+|+|+++++ ...++. |.+|++...
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY---DAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT---TEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC---CccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 444489999999999655553 89999999999888876543 4689999999985554 456688 999998643
Q ss_pred ccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccce
Q 001343 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPW 741 (1096)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw 741 (1096)
... .
T Consensus 162 g~~----------------------------------------------------------------------------~ 165 (331)
T 3u4y_A 162 GVL----------------------------------------------------------------------------F 165 (331)
T ss_dssp CCE----------------------------------------------------------------------------E
T ss_pred CcE----------------------------------------------------------------------------e
Confidence 100 0
Q ss_pred eeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEee-cCCeEEEeeccCCccCCCCceeeecCccccccCcccc
Q 001343 742 QLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (1096)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~ 820 (1096)
+. . ...+. ....+..++|+|+|+++++++ .++.|.+|++.. ++.
T Consensus 166 ~~------~-~~~~~------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~----------------------~~~ 210 (331)
T 3u4y_A 166 DT------G-QEFIS------GGTRPFNITFTPDGNFAFVANLIGNSIGILETQN----------------------PEN 210 (331)
T ss_dssp EE------E-EEEEC------SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS----------------------TTS
T ss_pred ec------C-Ccccc------CCCCccceEECCCCCEEEEEeCCCCeEEEEECCC----------------------Ccc
Confidence 00 0 00000 334578899999999776665 478999998643 221
Q ss_pred ---ccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEcccceE--EEeecCC----CC---CeeEEEEecCCCc
Q 001343 821 ---MANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKV--MTTFMSP----PP---ASTFLAFHPQDNN 886 (1096)
Q Consensus 821 ---~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~~~--~~~~~~h----~~---~i~~l~~s~~d~~ 886 (1096)
+. .+. ....+..++|+|||++|+++. ++.|.+||+.+++. +..+..+ .. ....++|+| |++
T Consensus 211 ~~~~~-~~~---~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~ 285 (331)
T 3u4y_A 211 ITLLN-AVG---TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TET 285 (331)
T ss_dssp CEEEE-EEE---CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSS
T ss_pred cceee-ecc---CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCC
Confidence 11 122 235677899999999777665 47799999998877 4443322 22 234689999 888
Q ss_pred EEEEee-CCCeEEEEeeccce
Q 001343 887 IIAIGT-EDSTIHIYNVRVDE 906 (1096)
Q Consensus 887 ~l~s~~-~dg~i~iw~~~~~~ 906 (1096)
+|++++ .++.|.+||+....
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCE
T ss_pred EEEEecCCCCcEEEEEecCCc
Confidence 776554 56799999998765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-19 Score=195.31 Aligned_cols=268 Identities=12% Similarity=0.101 Sum_probs=209.2
Q ss_pred CCCEEEEEEcCCCCEEEEEEC-------CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 406 PISVSRVAWSPDGNYVGVAFT-------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
...+..++|+|+|++|++++. ++.|.+||..+++.... +. ....+..++|+|+++. +++++..++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence 346889999999999988874 56899999999876653 22 2345788999999984 455666689999
Q ss_pred EEE-cCCceEEEeeCCCCC---------eEEEEeeecCCCcEEEEEE--CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEE
Q 001343 479 VWE-LSGRKLFNFEGHEAP---------VYSICPHHKENIQFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLY 546 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 546 (1096)
+|| .+++.+..+..+... +.+++|++ +++++++++ .++.|.+||..+.+....+..+...+..++|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 999 888888887765432 67888877 556666665 4889999999988887777656667889999
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC---ccceEEEEEeCCCCEEEEEEc-CCeEEEEeCCCCeEEEE
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTS 622 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 622 (1096)
+|+|++++++.. ++.|.+||..+++....+.... ...+..++|+|+++.+++++. ++.|.+||..+++.+..
T Consensus 193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999998875 8899999999999988876521 225677999999998877765 58999999999999888
Q ss_pred eecCCCCCCccEEEEeCCCCEEEEEE-CCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 623 TDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 623 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
+.... ...++|+|+++.++++. .++.|.+||..++ +....+... ..+..++|+|+|+.++.+
T Consensus 269 ~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~------~~~~~~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 269 VAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY-KVVKTFDTP------THPNSLALSADGKTLYVS 331 (353)
T ss_dssp EECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEEEECC------SEEEEEEECTTSCEEEEE
T ss_pred EEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC-eEEEEEecC------CCCCeEEEcCCCCEEEEE
Confidence 87543 26799999999766665 6899999999887 444444332 246789999999976433
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-19 Score=195.86 Aligned_cols=284 Identities=12% Similarity=0.181 Sum_probs=193.4
Q ss_pred eeecCC-CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCC-CeEEEEecC--CCCeeecccceeecccccCcccccccc
Q 001343 327 TWSLDD-LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN-GEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIF 402 (1096)
Q Consensus 327 ~~~~~~-~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~d-g~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1096)
+|+++. .....+..+.|...+.+++|+|+|++ |++++.+ +.|.+|++. +++..... .+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~v~~~~~~~~~~~~~~~~-----------------~~ 80 (343)
T 1ri6_A 19 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRY-LYVGVRPEFRVLAYRIAPDDGALTFAA-----------------ES 80 (343)
T ss_dssp EEEECTTSCEEEEEEEECSSCCCCEEECTTSSE-EEEEETTTTEEEEEEECTTTCCEEEEE-----------------EE
T ss_pred EEEECCCCcEEEeeeEecCCCCceEEECCCCCE-EEEeecCCCeEEEEEecCCCCceeecc-----------------cc
Confidence 888864 22345566778899999999999995 6666665 999999997 55532210 12
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEE
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVW 480 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iw 480 (1096)
..+. .+.+++|+|+|++|++++. ++.|.+||+..+........+. ....+.+++|+|+++ .+++++ .++.|++|
T Consensus 81 ~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~ 156 (343)
T 1ri6_A 81 ALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNR--TLWVPALKQDRICLF 156 (343)
T ss_dssp ECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSS--EEEEEEGGGTEEEEE
T ss_pred ccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCC--EEEEecCCCCEEEEE
Confidence 2223 7889999999998877765 7899999995433222222333 334689999999999 566665 89999999
Q ss_pred E-cC-CceEE----EeeC-CCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEEcCC--CCee--eEEe-CC-----CCcEE
Q 001343 481 E-LS-GRKLF----NFEG-HEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDT--MGSR--VDYD-AP-----GHWCT 542 (1096)
Q Consensus 481 d-~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~--~~~~--~~~~-~~-----~~~i~ 542 (1096)
| .+ ++... .+.. ....+..++|+| ++.+++++ ..++.|.+|+++. +... .... .. ...+.
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP--NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 234 (343)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECT--TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred EecCCCceeeecccccccCCCCCcceEEECC--CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence 9 55 54432 2232 344688899976 56766555 4889999999964 2221 1221 11 23577
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCC--C--CeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeC--C
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNES--E--GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDM--D 615 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~--~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~--~ 615 (1096)
.++|+|+|++++++.. .++.|.+||+. + .+.+..+..+. .+..++|+|+++++++++ .++.|.+|++ .
T Consensus 235 ~i~~s~dg~~l~v~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 235 DIHITPDGRHLYACDR---TASLITVFSVSEDGSVLSKEGFQPTET--QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp EEEECTTSSEEEEEET---TTTEEEEEEECTTSCCEEEEEEEECSS--SCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred ceEECCCCCEEEEEec---CCCEEEEEEEcCCCCceEEeeeecCCC--ccceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 8999999998886542 37899999998 3 34455555443 366799999999988887 6899999954 4
Q ss_pred CCeE--EEEeecCCCCCCccEEEEeCCCC
Q 001343 616 NVNI--LTSTDAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 616 ~~~~--~~~~~~~~~~~~v~~~~~s~~~~ 642 (1096)
+++. +..+... ....+++|.++.+
T Consensus 310 ~g~~~~~~~~~~g---~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 310 QGLLHEKGRYAVG---QGPMWVVVNAHEG 335 (343)
T ss_dssp TTEEEEEEEEECS---SSCCEEEEEEEC-
T ss_pred CceeeEccccccC---CCCeeEEEEcccC
Confidence 6644 3333332 2567888877543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-19 Score=199.59 Aligned_cols=267 Identities=7% Similarity=-0.001 Sum_probs=200.0
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCC-CEEEEEEcCCCCEEEE-EECCCeEEEEEcc
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI-SVSRVAWSPDGNYVGV-AFTKHLIQLYSYA 436 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~spd~~~l~s-~~~dg~i~vwd~~ 436 (1096)
++++++.++.|.+||+.+++.+... ..++.. .+.+++|+|||+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE------------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 6889999999999999998776431 111222 4788999999987755 4557899999999
Q ss_pred CCCccccceeecc---cccCEEEEEEecCCCcEEEEEEe------------CCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 437 GSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG------------DDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 437 ~~~~~~~~~~l~~---h~~~v~~l~~s~d~~~~~l~s~s------------~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
+++....+. ... |...+.+++|+|+|+ .+++++ .++.|.+|| .+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRID-LSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEEE-CCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeEE-cCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 987665321 111 233677899999999 666665 579999999 77777777764 4457788
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCC----------------
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS---------------- 564 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~---------------- 564 (1096)
+|+| ++++|+++ ++.|.+||+.+++....+..+.. ...+.|+|+++.++..+.. ++
T Consensus 141 ~~s~--dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~---~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWAR--DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHES---SGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECT--TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTT---TTEEEEEEEEEBTTSCTT
T ss_pred EECC--CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccC---CCceeeeeeccccccccc
Confidence 8866 66777777 68999999998877666654431 1123788999877654321 11
Q ss_pred -------eEEEEeCCCCeeeE-EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 565 -------FLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 565 -------~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
.|.+||+.+++... .+..+.. .+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCC-ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 57899999988752 2223332 56779999999999888 6899999999999888877543 578999
Q ss_pred EeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 637 FSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|+|+|++|++++.++.|.+||+.++
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCC
Confidence 9999999999999999999999887
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=194.67 Aligned_cols=248 Identities=13% Similarity=0.093 Sum_probs=185.3
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCC-CCeeecccceeecccccCccccccccccC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1096)
+|++. .++......|...|.+++|+|+|+ +|++++ ++.|.+||+.+ ++.... ..+|
T Consensus 26 ~~d~~--~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~ 82 (297)
T 2ojh_A 26 IFNIR--TRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGF 82 (297)
T ss_dssp EEETT--TTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTT
T ss_pred EEeCC--CCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------cccc
Confidence 55554 345555666899999999999999 577765 88999999998 765431 3334
Q ss_pred -CCCEEEEEEcCCCCEEEEEE--CCCeEEEEEc--cCCCccccceeecccccCEEEEEEecCCCcEEEE-EEeCCCcEEE
Q 001343 406 -PISVSRVAWSPDGNYVGVAF--TKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVV-TCGDDKLIKV 479 (1096)
Q Consensus 406 -~~~V~~l~~spd~~~l~s~~--~dg~i~vwd~--~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~-s~s~d~~i~i 479 (1096)
...|.+++|+|||++|++++ .++.+.||.+ .+++ .. .+..+ ..+..++|+|+++ .|+ +++.|+.+++
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~--~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGK--SFTYCGIRDQVFDI 155 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSS--EEEEEEEETTEEEE
T ss_pred ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCC--EEEEEECCCCceEE
Confidence 46789999999999999998 3345555555 4443 22 23333 3489999999999 454 7888999999
Q ss_pred EE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcC-CCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 480 WE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD-TMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 480 wd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
|+ ..+.....+..+...+.+++|+| ++.+|+.++ .++.+++|+++ .......+..+...+..++|+|+|++|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 156 YSMDIDSGVETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp EEEETTTCCEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred EEEECCCCcceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEE
Confidence 99 55566677778888999999977 667777665 59999999987 45555666666778999999999999998
Q ss_pred EeeccC-------CCCeEEEEeCCCCeeeEE--EcCcCccceEEEEEeCCCCEEEEEEcCC
Q 001343 556 CGTSKD-------GDSFLVEWNESEGTIKRT--YAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1096)
Q Consensus 556 ~~~~~~-------~~~~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg 607 (1096)
++.+.. ....|++||+.+++.... +.++.. .+..++|+|+++.|++++.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred EEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 875321 136799999998866443 335554 677799999999998887653
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-19 Score=214.63 Aligned_cols=271 Identities=11% Similarity=0.057 Sum_probs=194.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeC-CCeEEEEecCCCCeeecccceeecccccCccccccccccCC-CCEEEEEEcCCCCEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSS-NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYV 421 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~l 421 (1096)
..+|++++|+|||++ ||.++. ||++.||++.+++... +..|. ..|..++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 347999999999994 776665 9999999986665432 33444 68999999999 777
Q ss_pred EEEEC---CCeEEEEEccC--CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 422 GVAFT---KHLIQLYSYAG--SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 422 ~s~~~---dg~i~vwd~~~--~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
++++. +....+|.+.. ...... +..+ ..+...+|+||++.+.+++++.|+ +.+|| .+++...... +..
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~~---l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~-~~~ 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQR---LEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELAR-LPG 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCEE---CTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEE-ESS
T ss_pred EEeccCCCCcceEEEEEeccCCCcccc---ccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeec-CCC
Confidence 77765 45566766543 222221 2222 234467999999864555555554 55999 6665544443 333
Q ss_pred CeEEEEeeecCCCcEEEEEECC----CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 496 PVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.+++|+| ||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+
T Consensus 153 --~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 7888877 67899988877 78999999877654 56677778999999999999995543 22238999999
Q ss_pred CCCeeeEEEcCcCccceEEEE--------EeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCE
Q 001343 572 SEGTIKRTYAGFRKKSNGVVQ--------FDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 643 (1096)
.+++.. .+.++.. .+..+. |+|+|..+++++.++.+++|++ ++.... .. ..+.+++|+ ++++
T Consensus 226 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~--~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 226 RDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQ--GNHGRVVLW-RGKL 295 (582)
T ss_dssp TTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CS--SEEEEEEEE-TTEE
T ss_pred CCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CC--CceEEEEec-CCEE
Confidence 998887 6666544 444455 9999988889999999999999 665541 22 368899999 9999
Q ss_pred EEEEECCCc---EEEEEcC
Q 001343 644 LAVTTADNG---FKILANA 659 (1096)
Q Consensus 644 l~~~~~dg~---i~iwd~~ 659 (1096)
+++++.+.. +.+|+..
T Consensus 296 l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 296 VTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEETTEEEEEEEETTC
T ss_pred EEEEcCCCCCCeEEEEcCC
Confidence 988887744 5555543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-18 Score=189.58 Aligned_cols=298 Identities=9% Similarity=0.081 Sum_probs=203.3
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeEEeCCCC--cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC--
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-- 584 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-- 584 (1096)
+++++++.++.|.+||+.+++....+..... .+..++|+|+|+.++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 4789999999999999998877766654432 4788999999988766553 27899999999999888776432
Q ss_pred --ccceEEEEEeCCCCEEEEEE------------cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 585 --KKSNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 585 --~~~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
...+..++|+|++++++++. .++.|.+||+.+++.+..+.... .+.+++|+|++++++++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--C
Confidence 11345689999999998886 57999999999998888776532 57889999999988887 6
Q ss_pred CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCcee--EeccCCCcCCCcccCCCCccCCCCCC
Q 001343 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK--VERSSPVRPSPIINGVDPTSRSMDKP 728 (1096)
Q Consensus 651 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~s~d~~~ 728 (1096)
+.|.+||+.++ +....+..... ...+.|+|+|+.++.....+... ..... ....+..
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~ 212 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSW------EAETYAQPDVLAVWNQHESSGVMATPFYTA--------------RKDIDPA 212 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTT------TTTTBCCCBCCCCCCCCTTTTEEEEEEEEE--------------BTTSCTT
T ss_pred CeEEEEECCCC-cEeeeeecccc------CCCceeCCCccEEeeeccCCCceeeeeecc--------------ccccccc
Confidence 89999999887 33333332211 01236777777653332211100 00000 0000000
Q ss_pred ccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeec
Q 001343 729 RTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA 808 (1096)
Q Consensus 729 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~ 808 (1096)
... .....+.+||.. .+....+.+.. +...+.+++|+|+++.++++ ++.|.+|++..
T Consensus 213 ~~~-~~~~~v~~~d~~----~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~------------- 269 (337)
T 1pby_B 213 DPT-AYRTGLLTMDLE----TGEMAMREVRI---MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK------------- 269 (337)
T ss_dssp SGG-GEEEEEEEEETT----TCCEEEEEEEE---CSSCEEEEEECTTSSEEEEE--ESEEEEEETTT-------------
T ss_pred ccc-ccccceEEEeCC----CCCceEeecCC---CCCceeeEEECCCCCEEEEe--CCeEEEEECCC-------------
Confidence 000 011246778876 34443444444 66678899999999988777 68899988632
Q ss_pred CccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCC
Q 001343 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP 871 (1096)
Q Consensus 809 ~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h 871 (1096)
++.+. .+. ....+.+++|+|||++|++++ ++.|.+||+.+++.+..+..+
T Consensus 270 ---------~~~~~-~~~---~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 270 ---------NASIK-RVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ---------TEEEE-EEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred ---------CcCcc-eec---CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 22222 111 234578899999999888877 799999999999988887654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-18 Score=197.18 Aligned_cols=256 Identities=13% Similarity=0.108 Sum_probs=176.7
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeec---ccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS---KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
...++++++++++. ++++|+.++ |+||+......... ....+. .........|...|.+++|+|+|++
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~l~~spdg~~ 106 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIV-------DKVQGLLVPMKFPIHHLALSCDNLT 106 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEE-------ECCCCEEECCSSCEEEEEECTTSCE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCccccc-------ccCccccccCCCcccEEEEcCCCCE
Confidence 34689999999998 688888887 89988643211000 000000 0000112236778999999999999
Q ss_pred EE----EEECCCeEEEEEccCC--------CccccceeecccccCEEEEEEecC-CCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 421 VG----VAFTKHLIQLYSYAGS--------NDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 421 l~----s~~~dg~i~vwd~~~~--------~~~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
|| +|+.|+.|+|||+.++ +.+.....+.+|...|++++|+|+ +. +|++++.||+|++|| .++..
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcc
Confidence 99 7888999999999765 222333456789999999999998 56 899999999999999 77777
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-------CcEEEEEEcCCCCEEEEEeec
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-------HWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
+....+|...|.+++|+| +|++|++|+.||+|++||.+ +.....+..+. ..+.+++|++++.++++.+..
T Consensus 185 ~~~~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 777788999999999987 57899999999999999998 44444443332 279999999998888765542
Q ss_pred c---CCCCeEEEEeCCCCe-----eeEEEc-------CcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeC
Q 001343 560 K---DGDSFLVEWNESEGT-----IKRTYA-------GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDM 614 (1096)
Q Consensus 560 ~---~~~~~i~iwd~~~~~-----~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~ 614 (1096)
. .....+++|++.+.+ ....+. +... ....+.+-++.+++++++ ..+.|.++..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 1 112348999987542 112221 1122 222233446777776665 3444555554
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=220.90 Aligned_cols=347 Identities=12% Similarity=0.023 Sum_probs=227.3
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC-CCCccEEEEeCCCCEEEEEEC---------CCcEEEEEcC
Q 001343 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTA---------DNGFKILANA 659 (1096)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~ 659 (1096)
.+.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 478999995 55555799999999999988777654421 013789999999999999886 7899999998
Q ss_pred CCcccc--ccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCC
Q 001343 660 IGLRSL--RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDK 737 (1096)
Q Consensus 660 ~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~ 737 (1096)
++. .. ..+. ..+..++|||||+.++. +. ++.
T Consensus 99 ~g~-~~~~~~l~--------~~~~~~~~SPDG~~la~-------------------------------------~~-~~~ 131 (719)
T 1z68_A 99 NGE-FVRGNELP--------RPIQYLCWSPVGSKLAY-------------------------------------VY-QNN 131 (719)
T ss_dssp TTE-ECCSSCCC--------SSBCCEEECSSTTCEEE-------------------------------------EE-TTE
T ss_pred CCc-cccceecC--------cccccceECCCCCEEEE-------------------------------------EE-CCe
Confidence 873 21 1111 23566788877776633 32 367
Q ss_pred ccceeeeeeecCCceEEEEcCCCCCCcccE-----------------EEEEEecCCceEEEeecC-CeEEEeeccCCc--
Q 001343 738 PKPWQLAEIVDSGQCRLVTMPESTDTSSKV-----------------VRLLYTNSAVGLLALGSN-GVQKLWKWHRNE-- 797 (1096)
Q Consensus 738 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i-----------------~~l~~s~~~~~l~~~~~d-g~v~vw~~~~~~-- 797 (1096)
|++|++. ++....+...+ +...| .+++|||||+.|+.++.+ +.+.+|.+....
T Consensus 132 i~~~~~~----~g~~~~l~~~~---~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~ 204 (719)
T 1z68_A 132 IYLKQRP----GDPPFQITFNG---RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDE 204 (719)
T ss_dssp EEEESST----TSCCEECCCCC---BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSS
T ss_pred EEEEeCC----CCCcEEEecCC---CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence 8888876 34444433333 22222 489999999999888764 455555432111
Q ss_pred ---------cCCCCceeeecCccccccCccccc---cc----cccCCCcCCCeeeeeecCCCcEEEEecC-----CeEEE
Q 001343 798 ---------QNPSGKATASAVPQHWLPSSGLLM---AN----DVAGVNLEEAVPCIALSKNDSYVMSATG-----GKISL 856 (1096)
Q Consensus 798 ---------~~~~g~~~~~~~i~~w~~~~~~~~---~~----~~~g~~~~~~v~~l~~s~dg~~la~~~d-----g~v~i 856 (1096)
....|.......+.+||+.++... .. .+.+ |...+..++||||++++++..+ ..|.+
T Consensus 205 ~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~ 282 (719)
T 1z68_A 205 QYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS--SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSI 282 (719)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT--SCEEEEEEEESSSSEEEEEEEESSTTEEEEEE
T ss_pred CCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC--CcceEEEeEEeCCCeEEEEEeccccCeEEEEE
Confidence 011222223346788998887653 21 1233 7778999999999988877542 24899
Q ss_pred EE----cccceEEEee----cCCCCCee-----EEEEecCCCcEEEE--eeCCCe--EEEEeeccceeeeeecccccccc
Q 001343 857 FN----MMTFKVMTTF----MSPPPAST-----FLAFHPQDNNIIAI--GTEDST--IHIYNVRVDELCVWSIDTWEKRK 919 (1096)
Q Consensus 857 wd----~~~~~~~~~~----~~h~~~i~-----~l~~s~~d~~~l~s--~~~dg~--i~iw~~~~~~~~~w~~~~~~~~~ 919 (1096)
|| +.++++...+ ..|...+. .++|+| |++.++. ...+|. |.+|++.+++
T Consensus 283 ~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~~------------- 348 (719)
T 1z68_A 283 CDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVEN------------- 348 (719)
T ss_dssp EEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCSTT-------------
T ss_pred EcccCCCCCCceEEEEecccccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCCc-------------
Confidence 99 8888877666 47777776 889999 8885554 445664 5555655443
Q ss_pred ceeeecCCCCCCCCCceEEEecCCcEEEE-Eec-----ceEEEEEccc--cee-ccccc---cCCCCCCCceEEEEeeCC
Q 001343 920 SVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE-----TQLAIYDASK--MER-IRQWT---PQDALSAPISCAVYSCNS 987 (1096)
Q Consensus 920 ~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d-----~~i~iwd~~~--~~~-~~~~~---~~~~~~~~i~~l~~s~dg 987 (1096)
...+..+.. .+..+.++ +++.|+. +.+ +..++|.+.. +.. ...+. ..+ ...+..+.|+|||
T Consensus 349 ---~~~lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~--~~~~~~~~~s~dg 421 (719)
T 1z68_A 349 ---AIQITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKE--RCQYYTASFSDYA 421 (719)
T ss_dssp ---CEECSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTT--TBCBEEEEECGGG
T ss_pred ---eEecccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCC--CCceEEEEECCCC
Confidence 122333332 56778888 8888887 554 6788888753 421 12222 112 5678899999999
Q ss_pred cEEEEEe-cC--CcEEEEecCCCceeEEEc
Q 001343 988 QLVFATF-CD--GNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 988 ~~la~~~-~d--g~i~vwd~~~~~~~~~~~ 1014 (1096)
++++... .+ ..+.+||+.+++....+.
T Consensus 422 ~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 422 KYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 9877543 33 468899998888554443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=222.06 Aligned_cols=311 Identities=11% Similarity=0.069 Sum_probs=209.2
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCC---CEEEEEEcCCCCEEEEEE
Q 001343 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spd~~~l~s~~ 425 (1096)
+++|+|+|+ +++++ .|+.|++||+.+++.... +.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEEe
Confidence 689999996 56655 699999999999886532 233322 488999999999999987
Q ss_pred C---------CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe-eCCC
Q 001343 426 T---------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHE 494 (1096)
Q Consensus 426 ~---------dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~~~ 494 (1096)
. ++.|++||+.+++.+... .+ ...+..++|+|||+ .|+.+. |+.|++|| .+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 689999999998763111 12 25688999999999 677775 78999999 666654322 2333
Q ss_pred CCe-----------------EEEEeeecCCCcEEEEEECCC----------------------------------eEEEE
Q 001343 495 APV-----------------YSICPHHKENIQFIFSTAIDG----------------------------------KIKAW 523 (1096)
Q Consensus 495 ~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iw 523 (1096)
..| .+++|+| ||++|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSP--DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSP--NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECT--TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 322 4788876 778999887652 78899
Q ss_pred EcCCCCee--eE------EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe----CCCCeeeEEE----cCcCccc
Q 001343 524 LYDTMGSR--VD------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN----ESEGTIKRTY----AGFRKKS 587 (1096)
Q Consensus 524 d~~~~~~~--~~------~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~~ 587 (1096)
|+.++... .. +..+...+.+++|+||++.+++.....+....|++|| ..+++....+ .++.. .
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~-~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG-W 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS-C
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc-e
Confidence 99876542 11 2245668899999999877666443222235699999 8887766554 24433 3
Q ss_pred eE-----EEEEeCCCCEEEE--EEcCC--eEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC-----CcE
Q 001343 588 NG-----VVQFDTTQNHFLA--VGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGF 653 (1096)
Q Consensus 588 i~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i 653 (1096)
+. .+.|+|+|+.++. ...+| .|++|++.+++. ..+.... ..+..+.++ +++.|+..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~--~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGK--WEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSS--SCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCc--eEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 43 6789999986655 33444 677888877763 3343322 256777777 88877777765 788
Q ss_pred EEEEcCC--CccccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 654 KILANAI--GLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 654 ~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
++|.+.. +......+... .......+..+.|+|+|+.++..
T Consensus 385 ~l~~~~~~~g~~~~~~l~~~-~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 385 NIYRISIGSYPPSKKCVTCH-LRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp EEEEEECSSSSCCEEESSTT-TTTTTBCBEEEEECGGGSSEEEE
T ss_pred EEEEEeCCCCCCCceeccCc-cCCCCCceEEEEECCCCCEEEEE
Confidence 9998754 21111122110 00012235568899999887543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-17 Score=185.51 Aligned_cols=269 Identities=14% Similarity=0.106 Sum_probs=187.2
Q ss_pred eeecCCCCcceE--EeecCCCceEEEEEcCCCCcEEEEEeC--CCeEEEEecCCCCeeecccceeecccccCcccccccc
Q 001343 327 TWSLDDLPRTVA--VSLHQGSTVISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1096)
Q Consensus 327 ~~~~~~~~~~~~--~~l~h~~~V~~v~fsp~g~~llasg~~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1096)
+|.++...+.+. ....+...+..++|+|+|+ +++++.. ++.|.+|++.+++.... ..+
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-----------------~~~ 81 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-----------------NTV 81 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------------EEE
T ss_pred EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------------eee
Confidence 677766555443 3455778899999999998 6776643 78999999977653211 013
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeecc---------cccCEEEEEEecCCCcEEEEEEe
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDA---------HVGAVNDLAFAYPNKLLCVVTCG 472 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~~---------h~~~v~~l~~s~d~~~~~l~s~s 472 (1096)
..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|||+ ++++..
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~ 159 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDL 159 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEET
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeC
Confidence 34667788999999999999888 679999999964333332222211 123588999999999 788888
Q ss_pred CCCcEEEEE-c-CCceEE--EeeCC-CCCeEEEEeeecCCCcEEEE-EECCCeEEEEEcCC--CCee--eEEeCCC----
Q 001343 473 DDKLIKVWE-L-SGRKLF--NFEGH-EAPVYSICPHHKENIQFIFS-TAIDGKIKAWLYDT--MGSR--VDYDAPG---- 538 (1096)
Q Consensus 473 ~d~~i~iwd-~-~~~~~~--~~~~~-~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~--~~~~--~~~~~~~---- 538 (1096)
.++.|++|+ . +++... .+..+ ...+..++|+| +|+++++ +..++.|.+|+++. +... .......
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP--DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC--CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 899999999 5 454332 22222 33577889976 6675555 56789999999885 3221 1222221
Q ss_pred --CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC---CeeeEEEcCcCccceEEEEEeCCCCEEEEEEc-CCeEEEE
Q 001343 539 --HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFW 612 (1096)
Q Consensus 539 --~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iw 612 (1096)
..+..++|+|||++|+++.. .++.|.+|++.. .+.+..+..+.. .+..++|+|+|++|++++. ++.|.+|
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 35889999999998866543 278999999872 245555555443 5677999999999988875 4899999
Q ss_pred --eCCCCeEEE
Q 001343 613 --DMDNVNILT 621 (1096)
Q Consensus 613 --d~~~~~~~~ 621 (1096)
|..+++...
T Consensus 314 ~~d~~tg~l~~ 324 (347)
T 3hfq_A 314 ARDLTSGKLSL 324 (347)
T ss_dssp EECTTTCCEEE
T ss_pred EEeCCCCeEEe
Confidence 555666553
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=205.44 Aligned_cols=262 Identities=13% Similarity=0.170 Sum_probs=193.7
Q ss_pred CCCEEEEEEcCCCCEEEEEEC-CCeEEEEEccCCCccccceeecccc-cCEEEEEEecCCCcEEEEEEeC---CCcEEEE
Q 001343 406 PISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD---DKLIKVW 480 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s~---d~~i~iw 480 (1096)
..+|.+++|+|||++||+++. ||+++||++++++..+ +..|. ..+..++|+|| + ++++++. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~----lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK----LNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE----CCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe----eecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 557999999999999999887 9999999997765433 44555 68999999999 5 7777765 5566776
Q ss_pred E--c--CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 481 E--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 481 d--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
. . .+... .+.... .+...+|+|++++..+++++.++ +.+||+.+++.......+. .+++|+|||++++++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 6 4 55544 443322 34466888876655555555555 4599998876655444333 789999999999988
Q ss_pred eeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC--eEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
+.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+.. .+..
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~--~~~~ 242 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK--DFSS 242 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS--HHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc--Chhh
Confidence 763333378999999988765 5666655 678899999999999888888 8999999998877 5554433 5666
Q ss_pred EE--------EeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 635 LR--------FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 635 ~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
++ |+|||.++++++.|+.+++|++ + +..... ...+..++|+ +|+.+++..+
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~~~~~~--------~~~v~~~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID--G-ERVEAP--------QGNHGRVVLW-RGKLVTSHTS 301 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-EEECCC--------SSEEEEEEEE-TTEEEEEEEE
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-CeeccC--------CCceEEEEec-CCEEEEEEcC
Confidence 77 9999999999999999999999 5 333211 2346788999 8887755433
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.6e-18 Score=186.85 Aligned_cols=280 Identities=11% Similarity=0.086 Sum_probs=189.3
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC-CCCEEEEEEcCCCCEEEEE-EC
Q 001343 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYVGVA-FT 426 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~l~s~-~~ 426 (1096)
.++++++++ ++++++.++.|.+||+.+++.+.. +..+ ...+..++|+|||++++++ ..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 456788877 799999999999999999876643 1112 2257789999999976554 56
Q ss_pred CCeEEEEEccCCCccccceeeccc-----ccCEEEEEEecCCCcEEEEEEeCC------------CcEEEEE-cCCce--
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAH-----VGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWE-LSGRK-- 486 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h-----~~~v~~l~~s~d~~~~~l~s~s~d------------~~i~iwd-~~~~~-- 486 (1096)
++.|.+||+.+++...... + .+ ...+.+++|+|||+ +|++++.+ +.|.+|| .+++.
T Consensus 64 ~~~i~~~d~~t~~~~~~~~-~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFHAN-L-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp TTEEEEEETTTTEEEEEEE-S-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred CCcEEEEeCCCCcEEEEEE-c-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 8999999999887654321 1 22 23478999999999 67777755 8999999 66433
Q ss_pred -EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC---------------------C---cE
Q 001343 487 -LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------------------H---WC 541 (1096)
Q Consensus 487 -~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~i 541 (1096)
+..+.. ...+.+++|++ ++. +++++ +.|.+||..+++....+.... . ..
T Consensus 140 ~~~~~~~-~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 140 PVRTFPM-PRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp CSEEEEC-CSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred eeeeccC-CCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 334443 34588888876 556 55554 349999998887766554332 0 23
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE-EcCcCccceEEEEEeC-CCCEEEEEEcCCeEEEEeCCCCeE
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1096)
..+++++++........ ....+..++..+++.... +... ...+..++++| ++++++++ ++.|++||+.+++.
T Consensus 214 ~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 214 YTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL-TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL 287 (349)
T ss_dssp EEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred eeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC-CCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence 45666655432211100 011222345554442211 1122 23677899999 99999888 78999999999998
Q ss_pred EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccc
Q 001343 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 668 (1096)
+..+.... .+.+++|+|++++|++++.++.|.+||..++ +.+..+
T Consensus 288 ~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~ 332 (349)
T 1jmx_B 288 IKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI 332 (349)
T ss_dssp EEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred EEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeee
Confidence 88876433 5789999999998888888999999999877 444443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-17 Score=180.98 Aligned_cols=244 Identities=9% Similarity=0.070 Sum_probs=171.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEEC---CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEE
Q 001343 405 VPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVW 480 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iw 480 (1096)
+...+..++|+|||+ |++++. ++.|.+|++.+++. +....+..+...+..++|+|||+ +|++++ .++.|.+|
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVM 113 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEE
Confidence 456678899999999 555544 68999999977653 22224456778899999999999 667666 78999999
Q ss_pred E-c-CCc--eEEEeeC---------CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCeee--EEeC-CCCcEEE
Q 001343 481 E-L-SGR--KLFNFEG---------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRV--DYDA-PGHWCTT 543 (1096)
Q Consensus 481 d-~-~~~--~~~~~~~---------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~--~~~~-~~~~i~~ 543 (1096)
+ . ++. .+..+.. +...+.+++|+| +|+++++...++.|++|++.. +.... .... ....+..
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 9 4 333 2233321 122478899977 556666667789999999983 33222 2222 3336788
Q ss_pred EEEcCCCCEEEEEeeccCCCCeEEEEeCCC--Cee--eEEEcCcCc-----cceEEEEEeCCCCEEEE-EEcCCeEEEEe
Q 001343 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI--KRTYAGFRK-----KSNGVVQFDTTQNHFLA-VGEDSQIKFWD 613 (1096)
Q Consensus 544 l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~--~~~--~~~~~~~~~-----~~i~~~~~~~~~~~l~~-~~~dg~i~iwd 613 (1096)
++|+|||++++++.. .++.+.+|++.. ++. +..+..... ..+..++|+|+|+++++ ...++.|.+|+
T Consensus 192 ~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 999999998877653 378899998763 543 223332221 24777999999998755 55689999999
Q ss_pred CCC-C--eEEEEeecCCCCCCccEEEEeCCCCEEEEEECC-CcEEEEEcC
Q 001343 614 MDN-V--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANA 659 (1096)
Q Consensus 614 ~~~-~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~ 659 (1096)
+.. + +.+..+..+.. .+..++|+|+|++|++++.+ +.|.+|++.
T Consensus 269 ~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 973 2 44555554333 67899999999988888764 899999553
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-17 Score=201.59 Aligned_cols=353 Identities=8% Similarity=-0.014 Sum_probs=225.8
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC-CCc--cEEEEeCCCCEEEEEECC---------CcEEE
Q 001343 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNL--PRLRFSKEGNLLAVTTAD---------NGFKI 655 (1096)
Q Consensus 588 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~~~~s~~~~~l~~~~~d---------g~i~i 655 (1096)
...+.|+|++.+++++ |+.|++||+.+++....+..+... ..+ ..++|||||++|+.++.+ +.+.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 4468999999888876 899999999999988777765431 122 448999999999999876 56779
Q ss_pred EEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCC
Q 001343 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVT 735 (1096)
Q Consensus 656 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 735 (1096)
||+.++. .. .+..+. ..+...+|||||+.+|... +
T Consensus 97 ~d~~~~~-~~-~l~~~~-----~~~~~~~~SPdG~~la~~~--------------------------------------~ 131 (740)
T 4a5s_A 97 YDLNKRQ-LI-TEERIP-----NNTQWVTWSPVGHKLAYVW--------------------------------------N 131 (740)
T ss_dssp EETTTTE-EC-CSSCCC-----TTEEEEEECSSTTCEEEEE--------------------------------------T
T ss_pred EECCCCc-EE-EcccCC-----CcceeeEECCCCCEEEEEE--------------------------------------C
Confidence 9998883 22 233322 2466788888887774332 3
Q ss_pred CCccceeeeeeecCCceEEEEcCCCCCCcccE-----------------EEEEEecCCceEEEeecC-CeEEEeeccCCc
Q 001343 736 DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV-----------------VRLLYTNSAVGLLALGSN-GVQKLWKWHRNE 797 (1096)
Q Consensus 736 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i-----------------~~l~~s~~~~~l~~~~~d-g~v~vw~~~~~~ 797 (1096)
+.|.+|+.. ++....++..+ +...+ ..+.|||||+.|+....| +.+.+|.+....
T Consensus 132 ~~i~~~~~~----~~~~~~lt~~g---~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~ 204 (740)
T 4a5s_A 132 NDIYVKIEP----NLPSYRITWTG---KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS 204 (740)
T ss_dssp TEEEEESST----TSCCEECCSCC---BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred CeEEEEECC----CCceEEEcCCC---CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence 567777765 34444444433 32222 358999999999888765 458888774321
Q ss_pred c-------------CCCCceeeecCccccccCc---c---ccccccccCC--CcCCCeeeeeecCCCcEEEEec-C----
Q 001343 798 Q-------------NPSGKATASAVPQHWLPSS---G---LLMANDVAGV--NLEEAVPCIALSKNDSYVMSAT-G---- 851 (1096)
Q Consensus 798 ~-------------~~~g~~~~~~~i~~w~~~~---~---~~~~~~~~g~--~~~~~v~~l~~s~dg~~la~~~-d---- 851 (1096)
. ...|......++.+||+.+ + .......+.. ++...+..++|||||++++... .
T Consensus 205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~ 284 (740)
T 4a5s_A 205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNY 284 (740)
T ss_dssp STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTE
T ss_pred CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCE
Confidence 1 1233334444788999988 7 3333222100 1667799999999999776654 1
Q ss_pred CeEEEEEcccce----EEE--ee--cCCCCCee-----EEEEecCCCcEEE-Eee-CCC--eEEEEeeccceeeeeeccc
Q 001343 852 GKISLFNMMTFK----VMT--TF--MSPPPAST-----FLAFHPQDNNIIA-IGT-EDS--TIHIYNVRVDELCVWSIDT 914 (1096)
Q Consensus 852 g~v~iwd~~~~~----~~~--~~--~~h~~~i~-----~l~~s~~d~~~l~-s~~-~dg--~i~iw~~~~~~~~~w~~~~ 914 (1096)
..|++||+.+|+ +.. .+ ..|...+. .++|+| ||+.|+ ..+ .+| .|.+|++.++.
T Consensus 285 ~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~~~~~~~~-------- 355 (740)
T 4a5s_A 285 SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICYFQIDKKD-------- 355 (740)
T ss_dssp EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEEEETTCSS--------
T ss_pred EEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEEEECCCCc--------
Confidence 369999998887 332 22 45655544 789999 888776 555 444 56677776655
Q ss_pred cccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eec-------ceEEEEEcccceeccccccC-CCCCCCceEEEEee
Q 001343 915 WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE-------TQLAIYDASKMERIRQWTPQ-DALSAPISCAVYSC 985 (1096)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d-------~~i~iwd~~~~~~~~~~~~~-~~~~~~i~~l~~s~ 985 (1096)
..+...+.. .+..+. ++|++.|+. +.. ..|...++..+.....+... ......+..+.|||
T Consensus 356 -------~~~lT~g~~--~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~ 425 (740)
T 4a5s_A 356 -------CTFITKGTW--EVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSK 425 (740)
T ss_dssp -------CEESCCSSS--CEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECT
T ss_pred -------eEecccCCE--EEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECC
Confidence 233333422 444443 355777776 443 25666666655432223211 00145688999999
Q ss_pred CCcEEEEEecC---CcEEEEecCCCceeEEE
Q 001343 986 NSQLVFATFCD---GNIGVFDADTLRLRCYI 1013 (1096)
Q Consensus 986 dg~~la~~~~d---g~i~vwd~~~~~~~~~~ 1013 (1096)
||++++..... ..+.+++..+++....+
T Consensus 426 dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 426 EAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp TSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 99987755443 36788888877754443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-17 Score=180.06 Aligned_cols=301 Identities=12% Similarity=0.064 Sum_probs=183.7
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE-EcCCeEEEEeCCCCeEEE
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 621 (1096)
.+++++++.++++++. ++.|++||..+++.+..+..+....+..++|+|+++.++++ ..++.|++||+.+++.+.
T Consensus 4 g~~~~~~~~~~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNY----PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCCTTCEEEEEEET----TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccccCCCEEEEEeCC----CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 3456778888888876 89999999999999988876542245678999999876554 468999999999999887
Q ss_pred EeecCCC----CCCccEEEEeCCCCEEEEEECC------------CcEEEEEcCCCccccccccCCCcccccCcceeEEe
Q 001343 622 STDAEGG----LPNLPRLRFSKEGNLLAVTTAD------------NGFKILANAIGLRSLRAVENPPFEALRTPIESVAL 685 (1096)
Q Consensus 622 ~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (1096)
.+..... ...+..++|+|+|+++++++.+ +.|.+||+.++. ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~------------------- 139 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAK------------------- 139 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBC-------------------
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc-ccc-------------------
Confidence 7764321 1237899999999999988865 566666654431 000
Q ss_pred ecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcc
Q 001343 686 KVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765 (1096)
Q Consensus 686 s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1096)
...... +..
T Consensus 140 -----------------------------------------------------------------~~~~~~------~~~ 148 (349)
T 1jmx_B 140 -----------------------------------------------------------------PVRTFP------MPR 148 (349)
T ss_dssp -----------------------------------------------------------------CSEEEE------CCS
T ss_pred -----------------------------------------------------------------eeeecc------CCC
Confidence 000000 112
Q ss_pred cEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcE
Q 001343 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1096)
Q Consensus 766 ~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~ 845 (1096)
.+.+++|+|+|+ +++++ +.+.+|+. .+++... .++. ...... ..+.|
T Consensus 149 ~~~~~~~s~dg~-l~~~~--~~i~~~d~----------------------~~~~~~~-~~~~-~~~~~~--~~~~~---- 195 (349)
T 1jmx_B 149 QVYLMRAADDGS-LYVAG--PDIYKMDV----------------------KTGKYTV-ALPL-RNWNRK--GYSAP---- 195 (349)
T ss_dssp SCCCEEECTTSC-EEEES--SSEEEECT----------------------TTCCEEE-EECS-TTCCCT--TBCCC----
T ss_pred cccceeECCCCc-EEEcc--CcEEEEeC----------------------CCCceec-cccc-cccCCc--cccCc----
Confidence 345566666666 44432 22555543 2222111 0110 000000 00011
Q ss_pred EEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCc-----------EEEEeeCCCeEEEEeeccceeeeeeccc
Q 001343 846 VMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-----------IIAIGTEDSTIHIYNVRVDELCVWSIDT 914 (1096)
Q Consensus 846 la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~-----------~l~s~~~dg~i~iw~~~~~~~~~w~~~~ 914 (1096)
+.+.+|......... .....+++++ ++. ++.....++.+.+|++..
T Consensus 196 ------~~~~~~~~~~~~~~~------~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 252 (349)
T 1jmx_B 196 ------DVLYFWPHQSPRHEF------SMLYTIARFK-DDKQDPATADLLYGYLSVDLKTGKTHTQEFAD---------- 252 (349)
T ss_dssp ------BCCCCCCCCCTTCEE------EEEEEEEEC--------CCCEEEEEEEEEETTTCCEEEEEEEE----------
T ss_pred ------cceeeecCCCcceeE------EeeeeeeecC-CCcCCccccccceeEEEEeccCCcEEeccccc----------
Confidence 111222211110000 0233456665 332 111223334444444321
Q ss_pred cccccceeeecCCCCCCCCCceEEEec-CCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEE
Q 001343 915 WEKRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT 993 (1096)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~v~~v~fs~-dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 993 (1096)
.. ..+..++|+| ||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|+++
T Consensus 253 --------------~~-~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 253 --------------LT-ELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLG 312 (349)
T ss_dssp --------------CS-SCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEE
T ss_pred --------------CC-CcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC----CCCccceEECCCCCEEEEe
Confidence 11 1678899999 99999888 89999999999998777654 3457899999999999988
Q ss_pred ecCCcEEEEecCCCceeEEEc
Q 001343 994 FCDGNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 994 ~~dg~i~vwd~~~~~~~~~~~ 1014 (1096)
+.++.|.+||+.+++....+.
T Consensus 313 ~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 313 GTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SBSSEEEEEETTTTEEEEEEE
T ss_pred cCCCeEEEEeccccceeeeee
Confidence 899999999999998766554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-16 Score=178.45 Aligned_cols=271 Identities=14% Similarity=0.147 Sum_probs=183.9
Q ss_pred EEEEEe----CCCeEEEEecC--CCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC----C
Q 001343 359 LLLVGS----SNGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----H 428 (1096)
Q Consensus 359 llasg~----~dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d----g 428 (1096)
++++|+ .++.|.+|++. +++.... ... +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~-----------------~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL-----------------SDA--EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE-----------------EEE--ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe-----------------ecc--cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 466664 35689999774 4543321 012 56678889999999999999886 7
Q ss_pred eEEEEEccCC-CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe------eC--------
Q 001343 429 LIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF------EG-------- 492 (1096)
Q Consensus 429 ~i~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~------~~-------- 492 (1096)
.|.+|+++.. ..+..+.....+......+++ +++. ++++...++.|.+|+ .....+..+ .+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999998763 223333334445667788888 7773 344444688999999 433322111 11
Q ss_pred CCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcCCCCe------e-------eEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 493 HEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGS------R-------VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
+...+.+++|+| +|+++++++ .++.|++|+++.... . .........+..++|+|+|++++++..
T Consensus 153 ~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 123357889876 667665555 589999999886542 1 122234456889999999998887763
Q ss_pred ccCCCCeEEEEeCCCCee--eEEEcCcC--ccceEEEEEeCCCCEEEEEEcC--CeEEEEeCC--CCe--EEEEeecCCC
Q 001343 559 SKDGDSFLVEWNESEGTI--KRTYAGFR--KKSNGVVQFDTTQNHFLAVGED--SQIKFWDMD--NVN--ILTSTDAEGG 628 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~--~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~~~~ 628 (1096)
.++.|.+|++.+++. +..+.... ......++|+|+|++|+++..+ +.|.+|++. +++ .+..+.. .
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 278999999987754 33332221 1245689999999998777654 899999996 444 3444443 2
Q ss_pred CCCccEEEEeCCCCEEEEEE-CCCcEEEEEcC
Q 001343 629 LPNLPRLRFSKEGNLLAVTT-ADNGFKILANA 659 (1096)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~ 659 (1096)
..+..++|+|+|++|++++ .++.|.+|++.
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2678999999999888888 57899997654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-17 Score=182.44 Aligned_cols=298 Identities=11% Similarity=0.009 Sum_probs=194.7
Q ss_pred CcceEEeec-CCCceEE-----EEEcCCCCcEEEEEeC-CC--eEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 334 PRTVAVSLH-QGSTVIS-----MDFHPSHQTLLLVGSS-NG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 334 ~~~~~~~l~-h~~~V~~-----v~fsp~g~~llasg~~-dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
.+..+..+. |...+.. .+|||||++ ||.++. +| .|.+||+.+++.... ..+
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~~ 78 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSK-LLFGGAFDGPWNYYLLDLNTQVATQL-------------------TEG 78 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCE-EEEEECTTSSCEEEEEETTTCEEEEC-------------------CCS
T ss_pred CCcceEEecCCcccccchhhcCccCCCCCCE-EEEEEcCCCCceEEEEeCCCCceEEe-------------------eeC
Confidence 344444444 6656666 899999995 555555 66 488889888776531 344
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEE--EecCCCcEEEEEE-----------
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTC----------- 471 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~--~s~d~~~~~l~s~----------- 471 (1096)
+...+..++|||||++|+.++.++.|++||+.+++... .+..+...+.... ++++++ .++..
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLT 153 (388)
T ss_dssp SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCC
T ss_pred CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccccccc
Confidence 55555567899999999999999999999999987544 2334555554444 488998 55532
Q ss_pred -----------eCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC------CeEEEEEcCCCCeeeE
Q 001343 472 -----------GDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVD 533 (1096)
Q Consensus 472 -----------s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~ 533 (1096)
+.+..|.+|| .+++ ...+..+...+..+.|+|. +|..|+.+..+ ..|.++|....... .
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~ 230 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMR-K 230 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCE-E
T ss_pred ccchhhhhhccCCcceEEEEECCCCc-eEEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceE-E
Confidence 2447899999 5554 4555556777889998761 44677776653 36777776654433 3
Q ss_pred EeCCC--CcEEEEEEcCCCCEEEEEeeccCC-CCeEEEEeCCCCeeeE--EEcCcCc--cceEEEEEeCCCCEEEEE---
Q 001343 534 YDAPG--HWCTTMLYSADGSRLFSCGTSKDG-DSFLVEWNESEGTIKR--TYAGFRK--KSNGVVQFDTTQNHFLAV--- 603 (1096)
Q Consensus 534 ~~~~~--~~i~~l~~s~~~~~l~~~~~~~~~-~~~i~iwd~~~~~~~~--~~~~~~~--~~i~~~~~~~~~~~l~~~--- 603 (1096)
+..+. ..+..++|+|||+.|+..+..... ...|++||+.+++... .+.++.. .......|+|+|+.|+..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 310 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD 310 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence 33333 257889999999988766542211 2249999999887533 3332100 001113689999887754
Q ss_pred ------EcCCeEEEEeCCCCeEEEEeecCCCCC--------CccEEEEeCCCCEEEEEEC-CCcEEEEEcC
Q 001343 604 ------GEDSQIKFWDMDNVNILTSTDAEGGLP--------NLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1096)
Q Consensus 604 ------~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~ 659 (1096)
..+..|++||+.+++............ .+..++|+|||+.|+..+. ++...+|.+.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 311 DSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 456689999999887654443322100 3678899999998887664 6777777653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-17 Score=202.86 Aligned_cols=314 Identities=11% Similarity=0.104 Sum_probs=203.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC-----CCEEEEEEcCCCCE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-----ISVSRVAWSPDGNY 420 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~spd~~~ 420 (1096)
...+++|+|||+ +++++ |+.|++||+.+++.... +.+|. .....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 467899999998 68876 99999999999886531 33333 23355899999999
Q ss_pred EEEEECC---------CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE-
Q 001343 421 VGVAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN- 489 (1096)
Q Consensus 421 l~s~~~d---------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~- 489 (1096)
|+.++.+ +.+.+||+.+++... +..|.+.+...+|||||+ .|+.+. |+.|++|| .+++..+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9998876 566799999987543 667888999999999999 677764 78999999 56654432
Q ss_pred eeCCCCCe-----------------EEEEeeecCCCcEEEEEECCC----------------------------------
Q 001343 490 FEGHEAPV-----------------YSICPHHKENIQFIFSTAIDG---------------------------------- 518 (1096)
Q Consensus 490 ~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg---------------------------------- 518 (1096)
..++...+ ..+.|+| ||+.|+.++.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~ 226 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP 226 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred CCCCccceecCcccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence 22333323 2477866 778888875321
Q ss_pred --eEEEEEcCC---CC--eeeEEeC------CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe----ee--EE
Q 001343 519 --KIKAWLYDT---MG--SRVDYDA------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IK--RT 579 (1096)
Q Consensus 519 --~i~iwd~~~---~~--~~~~~~~------~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~----~~--~~ 579 (1096)
+|++||+.+ ++ ....+.. +...+..++|+|||+.++........+..|++||+.+++ +. ..
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~ 306 (740)
T 4a5s_A 227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ 306 (740)
T ss_dssp EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence 578899887 63 2333332 556789999999999777665433335579999998887 21 22
Q ss_pred E--cCcCccce-----EEEEEeCCCCEEE-EEEc-C--CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 580 Y--AGFRKKSN-----GVVQFDTTQNHFL-AVGE-D--SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 580 ~--~~~~~~~i-----~~~~~~~~~~~l~-~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
+ .++.. .+ ....|+|||+.++ ..+. + ..|++|+..+++......+. ..|..+.. ++++.|+..+
T Consensus 307 l~~~~~~~-~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~---~~v~~~~~-~d~~~i~f~~ 381 (740)
T 4a5s_A 307 HIEMSTTG-WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGT---WEVIGIEA-LTSDYLYYIS 381 (740)
T ss_dssp EEEECSSS-CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSS---SCEEEEEE-ECSSEEEEEE
T ss_pred eeeccCCc-eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCC---EEEEEEEE-EeCCEEEEEE
Confidence 2 23332 22 2578999999877 6653 3 46889999877665443332 14555432 4466555544
Q ss_pred CC-----CcEEEEEcCCCc-cccccccCCCcccccCcceeEEeecCCCeEEecC
Q 001343 649 AD-----NGFKILANAIGL-RSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 649 ~d-----g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
.. +...||.+.... .....+.... ...........|+|+|++++...
T Consensus 382 ~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~-~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 382 NEYKGMPGGRNLYKIQLIDYTKVTCLSCEL-NPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp SCGGGCTTCBEEEEEETTEEEEEEESSTTT-STTTBCBEEEEECTTSSEEEEEE
T ss_pred ecCCCCCceeEEEEEECCCCCcceeecccc-CCCCCceEEEEECCCCCEEEEEe
Confidence 43 344555443221 1111121110 00123456789999999875443
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-16 Score=175.39 Aligned_cols=282 Identities=9% Similarity=0.034 Sum_probs=187.8
Q ss_pred eeecCCCCcceE--EeecCCCceEEEEEcCCCCcEEEEEeCC----CeEEEEecCC--CCeeecccceeecccccCcccc
Q 001343 327 TWSLDDLPRTVA--VSLHQGSTVISMDFHPSHQTLLLVGSSN----GEITLWELAM--RDRLVSKPFKIWDMAACSLPFQ 398 (1096)
Q Consensus 327 ~~~~~~~~~~~~--~~l~h~~~V~~v~fsp~g~~llasg~~d----g~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~ 398 (1096)
+|.++...+.+. ... +...+..++|+|+|+ +|++++.+ +.|.+|++.. ++....
T Consensus 31 ~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~---------------- 92 (361)
T 3scy_A 31 TFRFNEETGESLPLSDA-EVANPSYLIPSADGK-FVYSVNEFSKDQAAVSAFAFDKEKGTLHLL---------------- 92 (361)
T ss_dssp EEEEETTTCCEEEEEEE-ECSCCCSEEECTTSS-EEEEEECCSSTTCEEEEEEEETTTTEEEEE----------------
T ss_pred EEEEeCCCCCEEEeecc-cCCCCceEEECCCCC-EEEEEEccCCCCCcEEEEEEeCCCCcEEEe----------------
Confidence 777765555443 334 788899999999999 56666664 8999999876 332211
Q ss_pred ccccccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeec-----------ccccCEEEEEEecCCCcE
Q 001343 399 ASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQID-----------AHVGAVNDLAFAYPNKLL 466 (1096)
Q Consensus 399 ~~~~~~h~~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~-----------~h~~~v~~l~~s~d~~~~ 466 (1096)
.....+......+++ ++++|++++ .++.|.+|++.....+....... .+...+.+++|+|||+.
T Consensus 93 -~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~- 168 (361)
T 3scy_A 93 -NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY- 168 (361)
T ss_dssp -EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-
T ss_pred -eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE-
Confidence 012234557788888 888888776 57899999998654443221111 12334688999999994
Q ss_pred EEEEEeCCCcEEEEE-cCCc-------eE------EEeeCCCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcCCCCee
Q 001343 467 CVVTCGDDKLIKVWE-LSGR-------KL------FNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGSR 531 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~-------~~------~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~ 531 (1096)
+++++..++.|.+|+ .... .. .....+...+..++|+| +|+++++++ .++.|.+|+++++...
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS--DGKFAYLINEIGGTVIAFRYADGMLD 246 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC--CCCEEEEEcCCCCeEEEEEecCCceE
Confidence 344555689999998 3222 11 11223445678899976 667777777 6899999999865432
Q ss_pred e--EEe---CCCCcEEEEEEcCCCCEEEEEeeccCC-CCeEEEEeCC--CCe--eeEEEcCcCccceEEEEEeCCCCEEE
Q 001343 532 V--DYD---APGHWCTTMLYSADGSRLFSCGTSKDG-DSFLVEWNES--EGT--IKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1096)
Q Consensus 532 ~--~~~---~~~~~i~~l~~s~~~~~l~~~~~~~~~-~~~i~iwd~~--~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~ 601 (1096)
. ... .+......++|+|||++|+++.. . ++.|.+|++. +++ .+..+.. ...+..++|+|+|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~---~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~ 321 (361)
T 3scy_A 247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNR---LKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLL 321 (361)
T ss_dssp EEEEEESCSSCCCCEEEEEECTTSSEEEEEEC---SSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEE
T ss_pred EeEEEecCCCCCCCcccEEECCCCCEEEEECC---CCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEE
Confidence 2 222 22245789999999999987764 2 4789999985 454 4444444 23566799999999998
Q ss_pred EEE-cCCeEEEEeC--CCCeEEEEeecCCCCCCccEEEEe
Q 001343 602 AVG-EDSQIKFWDM--DNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 602 ~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
+++ .++.|.+|++ .+++...... ......+.|+.|.
T Consensus 322 ~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~~~~p~~v~~~ 360 (361)
T 3scy_A 322 VACRDTNVIQIFERDQATGLLTDIKK-DIKVDKPVCLKFV 360 (361)
T ss_dssp EEETTTTEEEEEEECTTTCCEEECSC-CEECSSEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCcEeecce-eeeCCCCeEEEEc
Confidence 887 6789999655 4666554332 1122367788875
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-16 Score=181.54 Aligned_cols=253 Identities=11% Similarity=0.011 Sum_probs=174.8
Q ss_pred cccCCCCEEE-----EEEcCCCCEEEEEEC-CC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC
Q 001343 402 FKDVPISVSR-----VAWSPDGNYVGVAFT-KH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1096)
Q Consensus 402 ~~~h~~~V~~-----l~~spd~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~ 473 (1096)
+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ...++...+..+.|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5556655665 899999999999887 66 48888998876544 2345655566788999999 8899998
Q ss_pred CCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE----------------------ECCCeEEEEEcCCCCe
Q 001343 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----------------------AIDGKIKAWLYDTMGS 530 (1096)
Q Consensus 474 d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------------------~~dg~i~iwd~~~~~~ 530 (1096)
++.|++|| .+++....+..+...+....+..++++.+++.. ..++.|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 99999999 777776666666666655555445677777643 2447899999988765
Q ss_pred eeEEeCCCCcEEEEEEcC-CCCEEEEEeeccC--CCCeEEEEeCCCCeeeEEEcCcCc-cceEEEEEeCCCCEEEEEEc-
Q 001343 531 RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKD--GDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGE- 605 (1096)
Q Consensus 531 ~~~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~- 605 (1096)
.. +..+...+..+.|+| ||+.|+.+..... ....|+++|..++... .+..+.. ..+....|+|+|+.|+..+.
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 44 334455789999999 9999988764211 1447888888766543 3333332 25667899999997766442
Q ss_pred CC----eEEEEeCCCCeEEEEeecCCCC---CCccEEEEeCCCCEEEEE---------ECCCcEEEEEcCCC
Q 001343 606 DS----QIKFWDMDNVNILTSTDAEGGL---PNLPRLRFSKEGNLLAVT---------TADNGFKILANAIG 661 (1096)
Q Consensus 606 dg----~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~ 661 (1096)
++ .|++||+.+++........... .....+.|+|||+.|+.. ..+..|.+||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 3999999998754433322100 012334799999888754 44568999999876
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.4e-17 Score=183.20 Aligned_cols=244 Identities=13% Similarity=0.022 Sum_probs=173.2
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCc----------ccc--ceeecccccCEEEEEEecCCCcEEEE----
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND----------LRQ--HSQIDAHVGAVNDLAFAYPNKLLCVV---- 469 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~----------~~~--~~~l~~h~~~v~~l~~s~d~~~~~l~---- 469 (1096)
...++.+++++++.++++++.++ +++|+...-.. +.. ......|.+.|++++|+|+++ +|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~lav~~~ 112 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL--TLSACMM 112 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC--EEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC--EEEEEEe
Confidence 34688999999999999999887 88987642110 000 001123567899999999999 777
Q ss_pred EEeCCCcEEEEE-cCC--------ce---EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC
Q 001343 470 TCGDDKLIKVWE-LSG--------RK---LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (1096)
Q Consensus 470 s~s~d~~i~iwd-~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 537 (1096)
+|+.|++|++|| .++ +. +..+.+|...|.+++|+|. ++.+|++++.||+|++||+++.........|
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS-CTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC-CCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 788999999999 443 22 4566789999999999885 2579999999999999999988666666677
Q ss_pred CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc------cceEEEEEeCCCCEEEEEE-cCC---
Q 001343 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVG-EDS--- 607 (1096)
Q Consensus 538 ~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~-~dg--- 607 (1096)
...|.+++|+|+|++|++++. ++.|++||.+ ++....+..+.. ..+.+++|++++.++++.+ .+|
T Consensus 192 ~~~v~~v~wspdg~~lasgs~----dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQ----NGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEET----TSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred CCceeEEEEcCCCCEEEEEcC----CCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 789999999999999999987 9999999998 666666654422 2678899999887765533 443
Q ss_pred ---eEEEEeCCCCe-----EEEEeecC-----CCCCCccEEEEeCCCCEEEEEEC-CCcEEEEEc
Q 001343 608 ---QIKFWDMDNVN-----ILTSTDAE-----GGLPNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (1096)
Q Consensus 608 ---~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~ 658 (1096)
.+++|++.... ....+... .....-..+.+-++.+++++++. .+.|.++..
T Consensus 267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 38999997642 11222111 11112222333366666666654 444666553
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-16 Score=174.70 Aligned_cols=246 Identities=10% Similarity=0.059 Sum_probs=171.6
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcc-CCCccccceeecccccCEEEEEEecCCCcEEEEEEe------------
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG------------ 472 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s------------ 472 (1096)
...+..++|+|||++|++++.+ .|.+|++. +++..... ....+ +.+.+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3467889999999999999888 99999997 66543211 11111 235668999999842344543
Q ss_pred -CCCcEEEEE-c-CCceEEEee----CCCCCeEEEEeeecCCCcEEEEEEC-CCeEEEEEcC-CCCeee--EEeC--CCC
Q 001343 473 -DDKLIKVWE-L-SGRKLFNFE----GHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYD-TMGSRV--DYDA--PGH 539 (1096)
Q Consensus 473 -~d~~i~iwd-~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~-~~~~~~--~~~~--~~~ 539 (1096)
.++++.+|+ . +|+....+. .+...+.+++|+| +|+++++++. ++.|++|+++ +++... .+.. +..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 689999999 4 566554443 2456789999976 6677777664 6899999998 555432 2332 356
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC--CCeee---EEEcCcC----c-c-------ceEEEE-EeCCCCEEE
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIK---RTYAGFR----K-K-------SNGVVQ-FDTTQNHFL 601 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~--~~~~~---~~~~~~~----~-~-------~i~~~~-~~~~~~~l~ 601 (1096)
.+..++|+|+|++++++.. .++.+.+|++. +++.. ..+.... . . .+..++ |+|+|++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 7899999999999988763 26788998764 56543 2222111 1 1 367799 999999988
Q ss_pred EEEcC-C-----eEEEEeCC-CCeEEEE---eecCCCCCCccEEEEeC---CCCEEEEEECC-CcEEEEEcCCC
Q 001343 602 AVGED-S-----QIKFWDMD-NVNILTS---TDAEGGLPNLPRLRFSK---EGNLLAVTTAD-NGFKILANAIG 661 (1096)
Q Consensus 602 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~s~---~~~~l~~~~~d-g~i~iwd~~~~ 661 (1096)
++..+ + .|.+|++. +++.... ...... .+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 76643 2 89999996 5665432 222222 567899999 89999998864 89999998654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-15 Score=169.51 Aligned_cols=250 Identities=7% Similarity=0.091 Sum_probs=169.3
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecC-CCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE-
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY- 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~- 420 (1096)
+...+..++|+|+|+ +|++++.+ .|.+|++. +++...... ...+ +.+.+++|+|||++
T Consensus 38 ~~~~~~~~a~spdg~-~l~~~~~~-~v~~~~~~~~g~~~~~~~-----------------~~~~-g~~~~~~~spdg~~l 97 (365)
T 1jof_A 38 QDEPISWMTFDHERK-NIYGAAMK-KWSSFAVKSPTEIVHEAS-----------------HPIG-GHPRANDADTNTRAI 97 (365)
T ss_dssp TTCCCSEEEECTTSS-EEEEEEBT-EEEEEEEEETTEEEEEEE-----------------EECC-SSGGGGCTTSCCEEE
T ss_pred CCCCCcEEEECCCCC-EEEEEccc-eEEEEEECCCCCEEEeeE-----------------eecC-CCCccEEECCCCCEE
Confidence 445789999999999 57777777 99999997 665432100 0111 12456899999994
Q ss_pred -EEEEE-------------CCCeEEEEEccC-CCccccceeec-ccccCEEEEEEecCCCcEEEEEEe-CCCcEEEEE-c
Q 001343 421 -VGVAF-------------TKHLIQLYSYAG-SNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-L 482 (1096)
Q Consensus 421 -l~s~~-------------~dg~i~vwd~~~-~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~ 482 (1096)
++++. .++.+.+|++.. ++.......+. .+...+.+++|+|||+ +|++++ .++.|++|| .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~--~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 98 FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET--YLYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS--EEEEEETTTTEEEEEEEC
T ss_pred EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC--EEEEEcCCCCEEEEEEEC
Confidence 55553 689999999974 54433221111 2556899999999999 566554 468999999 5
Q ss_pred -CCceE--EEee--CCCCCeEEEEeeecCCCcEEEEEEC-CCeEEEEEcCC--CCeee---EEe-CC------CC-----
Q 001343 483 -SGRKL--FNFE--GHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDT--MGSRV---DYD-AP------GH----- 539 (1096)
Q Consensus 483 -~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~--~~~~~---~~~-~~------~~----- 539 (1096)
+|+.. ..+. .|...+..++|+| +|+++++++. ++.|.+|+++. ++... .+. .. ..
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHP--TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG 253 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECC--CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccc
Confidence 56643 2333 2456788999976 6778877775 78999998763 33321 121 11 11
Q ss_pred -cEEEEE-EcCCCCEEEEEeeccC--CCCeEEEEeCC-CCeeeEE---EcCcCccceEEEEEeC---CCCEEEEEEc-CC
Q 001343 540 -WCTTML-YSADGSRLFSCGTSKD--GDSFLVEWNES-EGTIKRT---YAGFRKKSNGVVQFDT---TQNHFLAVGE-DS 607 (1096)
Q Consensus 540 -~i~~l~-~s~~~~~l~~~~~~~~--~~~~i~iwd~~-~~~~~~~---~~~~~~~~i~~~~~~~---~~~~l~~~~~-dg 607 (1096)
.+..++ |+|||++|+++....+ ..+.|.+|++. +++.... ...+.. ....++|+| +|++|++++. ++
T Consensus 254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~-~~~~~a~sp~~~dg~~l~v~~~~~~ 332 (365)
T 1jof_A 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-GGHSNAVSPCPWSDEWMAITDDQEG 332 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-CTTCCCEEECTTCTTEEEEECSSSC
T ss_pred cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC-CcccceecCCCcCCCEEEEEEcCCC
Confidence 488999 9999999887654211 11289999986 6665432 322322 344588999 8999999886 48
Q ss_pred eEEEEeCCCC
Q 001343 608 QIKFWDMDNV 617 (1096)
Q Consensus 608 ~i~iwd~~~~ 617 (1096)
.|.+|+++..
T Consensus 333 ~v~v~~~~~~ 342 (365)
T 1jof_A 333 WLEIYRWKDE 342 (365)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEEchh
Confidence 9999998766
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-15 Score=165.97 Aligned_cols=312 Identities=10% Similarity=0.100 Sum_probs=200.0
Q ss_pred CCcEEEEEE------CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec------cCCCCeEEEEeCCCC
Q 001343 507 NIQFIFSTA------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEG 574 (1096)
Q Consensus 507 ~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~------~~~~~~i~iwd~~~~ 574 (1096)
++.++++.. .|+.|.+||..+++....+.....+ .++|+|||++++++... ...++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445666554 3789999999988877666655444 89999999999988631 012567999999999
Q ss_pred eeeEEEcCcC-----ccceEEEEEeCCCCEEEEEEc--CCeEEEEeCCCCeEEEE-eecCCCCCCccEEEEeCCC-CEEE
Q 001343 575 TIKRTYAGFR-----KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTS-TDAEGGLPNLPRLRFSKEG-NLLA 645 (1096)
Q Consensus 575 ~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~l~ 645 (1096)
+.+.++.... ......++++|+|++++++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9988876431 113445899999999999874 58999999999988887 65432 2335677765 6788
Q ss_pred EEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCC
Q 001343 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d 725 (1096)
+.+.||.+.+|+.....+......
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-------------------------------------------------------- 191 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-------------------------------------------------------- 191 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE--------------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeecc--------------------------------------------------------
Confidence 889999999998754212110000
Q ss_pred CCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCcee
Q 001343 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (1096)
Q Consensus 726 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~ 805 (1096)
...+|+.. ..+ ..+.+++++..++..+.++.+.++++..... .
T Consensus 192 -----------~~~~~~~~-------------------~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-----~- 234 (361)
T 2oiz_A 192 -----------SKQMFSVK-------------------DDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEV-----K- 234 (361)
T ss_dssp -----------CCCCSCTT-------------------TSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSC-----E-
T ss_pred -----------ccceEcCC-------------------CCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCc-----e-
Confidence 00011110 000 0111134444455455566677776532110 0
Q ss_pred eecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec------------CCeEEEEEcccceEEEeecCCCC
Q 001343 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT------------GGKISLFNMMTFKVMTTFMSPPP 873 (1096)
Q Consensus 806 ~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~------------dg~v~iwd~~~~~~~~~~~~h~~ 873 (1096)
.+..|+........... .......++|+||++.++++. .+.|.+||+.+++.+.++..+.
T Consensus 235 ---~~~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 235 ---VDGPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp ---EEEEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred ---ecccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 00111111100000000 011222478999987776643 2479999999999999998877
Q ss_pred CeeEEEEecCCCcEEEEeeCCCeEEEEeeccc--eeeeeeccccccccceeeecCCCCCCCCCceEEEecCCc
Q 001343 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD--ELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 944 (1096)
Q Consensus 874 ~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~ 944 (1096)
+.+++|+| |+++|+++.. ++|.+||..++ + .++.+..... ....++|+|||.
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~---------------~~~~i~~~G~-~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPK---------------LLRTIEGAAE-ASLQVQFHPVGG 360 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCE---------------EEEEETTSCS-SEEEEEECCCSC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcce---------------eeEEeccCCC-CcEEEEecCCCC
Confidence 99999999 8999998887 99999999998 6 3444322222 567899999985
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-16 Score=175.45 Aligned_cols=282 Identities=10% Similarity=-0.035 Sum_probs=181.1
Q ss_pred eEEEEEcCCCCcEEEEEeCC--CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 347 VISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~d--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
+.+++|||||++++++...+ ..|.+||+.+++.... ..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence 78899999999644444333 3788889888765421 12222223347899999999999
Q ss_pred ECCCeEEEEEccCCCccccceeecccccCEEE-------------------EEEecCCCcEEEEEE-----eCCCcEEEE
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-------------------LAFAYPNKLLCVVTC-----GDDKLIKVW 480 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~-------------------l~~s~d~~~~~l~s~-----s~d~~i~iw 480 (1096)
+.++.|.+||+.+++... ....+...... +.|+|+++ .++.+ ..+..|++|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS--WEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS--HHHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCc--ceeeeeeccCCCcceEEEE
Confidence 999999999999876433 12223332222 34677777 33332 456789999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC------CeEEEEEcCCCCeeeEEeCC-CCcEEEEEEcCCCCE
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSR 552 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~ 552 (1096)
| .+++... +..+...+..+.|+|. ++..|+..+.+ ..|.+||+............ ...+..++|+|+|+.
T Consensus 174 d~~~g~~~~-~~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGELEV-IHQDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCEEE-EEEESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcEEe-eccCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 9 5665543 3456677889999762 34556655543 35788887654433222211 235888999999998
Q ss_pred EEEEeeccC-CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC-CCCEEEEEE----------------cCCeEEEEeC
Q 001343 553 LFSCGTSKD-GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVG----------------EDSQIKFWDM 614 (1096)
Q Consensus 553 l~~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~ 614 (1096)
|+..+.... ..+.|++||+.+++........ ... ..|+| +|+.+++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 887754211 1245999999988765443222 123 78999 999888754 3478999999
Q ss_pred CCCeEEEEeecCCCC--------CCccEEEEeCCCCEEEEEEC-CCcEEEEEc
Q 001343 615 DNVNILTSTDAEGGL--------PNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (1096)
Q Consensus 615 ~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~ 658 (1096)
.+++........... ..+..++|+|+|+.|+.++. ++...+|.+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 887754333222110 02466899999998887775 555555544
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-15 Score=164.83 Aligned_cols=285 Identities=9% Similarity=0.077 Sum_probs=192.2
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC----------CCeEEEEE
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT----------KHLIQLYS 434 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~----------dg~i~vwd 434 (1096)
.|+.|.+||..+++.+.. +..+..+ .++|+|||++|+++.. ++.|.+||
T Consensus 29 ~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d 87 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD 87 (361)
T ss_dssp GGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred ccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEE
Confidence 378999999999887643 2333334 8999999999998862 56899999
Q ss_pred ccCCCccccceeecc---cccCEEEEEEecCCCcEEEEEEe--CCCcEEEEE-cCCceEEE-eeCCCCCeEEEEeeecCC
Q 001343 435 YAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFN-FEGHEAPVYSICPHHKEN 507 (1096)
Q Consensus 435 ~~~~~~~~~~~~l~~---h~~~v~~l~~s~d~~~~~l~s~s--~d~~i~iwd-~~~~~~~~-~~~~~~~v~~~~~~~~~~ 507 (1096)
..+++.+..+..... +......++|+|||+ +|+++. .+++|.+|| .+++.+.. +.. . ....+.+.|.+
T Consensus 88 ~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~- 162 (361)
T 2oiz_A 88 ADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNR- 162 (361)
T ss_dssp TTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTS-
T ss_pred CcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCC-
Confidence 998776664322111 234567899999999 566554 368999999 88877776 542 2 22334454543
Q ss_pred CcEEEEEECCCeEEEEEcCCCCeee-E------EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee--eE
Q 001343 508 IQFIFSTAIDGKIKAWLYDTMGSRV-D------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KR 578 (1096)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~-~------~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~ 578 (1096)
...+++.+.||.+.+|++....... . +.....+ ..+.+++++..++..+. ++.++++|+..... ..
T Consensus 163 ~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 163 PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TSEEEEEECSSSSCEEEE
T ss_pred CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CCeEEEEEecCCCceecc
Confidence 3678889999999999987533322 1 1111111 12334567777776654 77899999875432 22
Q ss_pred EEcCcC------c---cceEEEEEeCCCCEEEEEEc-----------CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 579 TYAGFR------K---KSNGVVQFDTTQNHFLAVGE-----------DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 579 ~~~~~~------~---~~i~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
.+.... . .....++++|+++.++++.. .+.|.+||+.+++.+..+..+. +..++|+
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~s 313 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTID 313 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEE
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEEC
Confidence 221110 0 01112689999888887653 3589999999999999988664 7999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCc-cccccccCCCcccccCcceeEEeecCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIGL-RSLRAVENPPFEALRTPIESVALKVSAS 690 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 690 (1096)
|+|++|++++. +.|.+||..++. +.+..+... -.....++++|+|+
T Consensus 314 pdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~-----G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 314 QQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA-----AEASLQVQFHPVGG 360 (361)
T ss_dssp TTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS-----CSSEEEEEECCCSC
T ss_pred CCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC-----CCCcEEEEecCCCC
Confidence 99999998887 999999998871 233333221 12245688898875
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-13 Score=159.78 Aligned_cols=328 Identities=11% Similarity=0.137 Sum_probs=216.0
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC--CCeEEEEeecCCCCCCccEEEEe--
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFS-- 638 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s-- 638 (1096)
++.|.++|..+++.+.++.... ....+.++|+|+++++++.|+.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s~~ 250 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETSKM 250 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEECCS
T ss_pred CCeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEccc
Confidence 8899999999999998887543 45579999999999999999999999996 778887776533 45789999
Q ss_pred --CCCCEEEEEEC-CCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcc
Q 001343 639 --KEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1096)
Q Consensus 639 --~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~ 715 (1096)
|||++++++.. ++.|.++|..+. +.+..+...... .+
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~~~i~~~~~~------------~~--------------------------- 290 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMT------------YD--------------------------- 290 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEEC------------TT---------------------------
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCC-cEEEEEeccccc------------cc---------------------------
Confidence 69988887765 589999997665 222222110000 00
Q ss_pred cCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeecc
Q 001343 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWH 794 (1096)
Q Consensus 716 ~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~ 794 (1096)
+ .... ....+..+..++++..++.... .|.|.++++.
T Consensus 291 --------------------~--------------~~~~--------p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~ 328 (567)
T 1qks_A 291 --------------------E--------------QEYH--------PEPRVAAILASHYRPEFIVNVKETGKILLVDYT 328 (567)
T ss_dssp --------------------T--------------CCEE--------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred --------------------c--------------cccc--------CCCceEEEEEcCCCCEEEEEecCCCeEEEEecC
Confidence 0 0000 1225666777777665554444 5888887763
Q ss_pred CCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEcccceEEEeecC--
Q 001343 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS-- 870 (1096)
Q Consensus 795 ~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~~~-- 870 (1096)
.... +.+. .+. .......+.|+|||++++++. +++|.++|+.+++.+..+..
T Consensus 329 ~~~~-----------~~v~----------~i~---~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg 384 (567)
T 1qks_A 329 DLNN-----------LKTT----------EIS---AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 384 (567)
T ss_dssp CSSE-----------EEEE----------EEE---CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCcc-----------ceee----------eee---ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence 3110 0000 011 233455789999999988776 58899999999998776643
Q ss_pred ---CCCCeeEEEEecCC-CcEEEEee-CCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcE
Q 001343 871 ---PPPASTFLAFHPQD-NNIIAIGT-EDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 945 (1096)
Q Consensus 871 ---h~~~i~~l~~s~~d-~~~l~s~~-~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~ 945 (1096)
|.+....+ ++| + +..++++. .+++|.+++..+... .....+.++.+.+... .-..++++|++++
T Consensus 385 ~~Phpg~g~~~-~~p-~~g~v~~t~~~g~~~Vsvid~~~~~~--------~~~~~kvv~~i~~~g~-g~~~i~~~p~~~~ 453 (567)
T 1qks_A 385 QTPHPGRGANF-VHP-TFGPVWATSHMGDDSVALIGTDPEGH--------PDNAWKILDSFPALGG-GSLFIKTHPNSQY 453 (567)
T ss_dssp SSBCCTTCEEE-EET-TTEEEEEEEBSSSSEEEEEECCTTTC--------TTTBTSEEEEEECSCS-CCCCEECCTTCSE
T ss_pred cCCCCccceee-ECC-CCCcEEEeCCCCCCeEEEecCCCCCC--------ccccCEEEEEEecCCC-CCEEEEeCCCCCe
Confidence 33222222 578 5 44445543 568999999887320 0000112333332221 3355789999999
Q ss_pred EEEEe--------cceEEEEEcccc-----eec-cccc-------cCCCCCCCceEEEEeeCCcEEEEEec-----CCcE
Q 001343 946 MLVVH--------ETQLAIYDASKM-----ERI-RQWT-------PQDALSAPISCAVYSCNSQLVFATFC-----DGNI 999 (1096)
Q Consensus 946 l~~~~--------d~~i~iwd~~~~-----~~~-~~~~-------~~~~~~~~i~~l~~s~dg~~la~~~~-----dg~i 999 (1096)
|.+.. ..+|.++|+.+. ... ..+. +.. ...+..+.|+++|+++.++.. ++.|
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i 531 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG--QPRVVQGEFNKDGTEVWFSVWNGKDQESAL 531 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS--CCEEEEEEECTTSSEEEEEEECCTTSCCEE
T ss_pred EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC--CcceEeeeECCCCCEEEEEeecCCCCCCcE
Confidence 99943 459999999877 211 1111 111 456889999999998776643 7899
Q ss_pred EEEecCCCceeEEEc
Q 001343 1000 GVFDADTLRLRCYIA 1014 (1096)
Q Consensus 1000 ~vwd~~~~~~~~~~~ 1014 (1096)
.|+|..++++...+.
T Consensus 532 ~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 532 VVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEETTTTEEEEEEC
T ss_pred EEEECCCceEEEEeC
Confidence 999999999887776
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-14 Score=157.89 Aligned_cols=248 Identities=14% Similarity=0.103 Sum_probs=183.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCC------------------------CeEEEEecCCCCeeecccceeecccccCcccccc
Q 001343 345 STVISMDFHPSHQTLLLVGSSN------------------------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~d------------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1096)
+.|.+|+++|+|+ ++++.+.+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 5799999999998 67777666 4799999988876532
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCC-ccccceee------cccccCEEEEEEec-CCCcEEEEEEe
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQI------DAHVGAVNDLAFAY-PNKLLCVVTCG 472 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~l------~~h~~~v~~l~~s~-d~~~~~l~s~s 472 (1096)
.-.++-.....++++|+|+++++...++.|++||.+... .+..+... .++-.....++|+| ++. ++++.+
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv~d~ 162 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFVSDG 162 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC--EEEEEC
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe--EEEEeC
Confidence 012345678999999999988888888999999986542 23211000 24555789999999 677 777776
Q ss_pred -CCCcEEEEEcCCceEEEeeCC----------CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCC
Q 001343 473 -DDKLIKVWELSGRKLFNFEGH----------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGH 539 (1096)
Q Consensus 473 -~d~~i~iwd~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~ 539 (1096)
.++.|++||.+|+.+..+... -.....+++.+. .+.++++...++.|++|+.++++....+. ....
T Consensus 163 ~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~ 241 (329)
T 3fvz_A 163 YCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHASFGR 241 (329)
T ss_dssp SSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTT
T ss_pred CCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEeccccCC
Confidence 699999999888888777432 233788999763 15777888889999999998777776664 3445
Q ss_pred cEEEEEEcCCCCEEEEEee---ccCCCCeEEEEeCCCCeeeEEEc---CcCccceEEEEEeCCCCEEEEEEcCCeEEEEe
Q 001343 540 WCTTMLYSADGSRLFSCGT---SKDGDSFLVEWNESEGTIKRTYA---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~---~~~~~~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1096)
.+..++++| +..+.+.+. .......+++|+..+++.+..+. ++.. ....++++|+|..+++...++.|++|+
T Consensus 242 ~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 242 NVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp CEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 788999999 433333321 01225689999999999998884 3333 577899999997777777899999999
Q ss_pred CCC
Q 001343 614 MDN 616 (1096)
Q Consensus 614 ~~~ 616 (1096)
+..
T Consensus 320 ~~~ 322 (329)
T 3fvz_A 320 LTE 322 (329)
T ss_dssp EEE
T ss_pred CCc
Confidence 753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-15 Score=180.13 Aligned_cols=286 Identities=12% Similarity=0.019 Sum_probs=189.0
Q ss_pred cCCCceEEEEEcCCCCcEEEEE--eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEE---------
Q 001343 342 HQGSTVISMDFHPSHQTLLLVG--SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS--------- 410 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg--~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------- 410 (1096)
.|...|..++|++++- +++++ +.++...||....+..... +..|...+.
T Consensus 21 ~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 21 SRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCC
T ss_pred hcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCc
Confidence 3777899999998865 46666 4588999999644433221 333444444
Q ss_pred EEEEc--CCCCE-EEEEEC-CCeEEEEEcc--C-CCccccceeecc-----cccCEEEEEEecCCCcEEEEEEeCC----
Q 001343 411 RVAWS--PDGNY-VGVAFT-KHLIQLYSYA--G-SNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDD---- 474 (1096)
Q Consensus 411 ~l~~s--pd~~~-l~s~~~-dg~i~vwd~~--~-~~~~~~~~~l~~-----h~~~v~~l~~s~d~~~~~l~s~s~d---- 474 (1096)
...|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+..++|+|||+ .|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~ 154 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGE 154 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCC
Confidence 45565 99998 776654 4567777765 2 33 33 2444 677899999999999 78877766
Q ss_pred ------CcEEEEEcCC------ceEEEee-CCCCCeEEEEeeecCCCcEEEEEECC--------CeEEEEEcC-CC---C
Q 001343 475 ------KLIKVWELSG------RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYD-TM---G 529 (1096)
Q Consensus 475 ------~~i~iwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~---~ 529 (1096)
..|++||..+ .....+. .+...+..++|+| ||++|+.++.+ ..|.+||+. ++ .
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999444 4455665 6666778888866 77889887755 379999998 45 3
Q ss_pred eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCcc-------ceEEEEEeCCCCEEEE
Q 001343 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK-------SNGVVQFDTTQNHFLA 602 (1096)
Q Consensus 530 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~ 602 (1096)
.......+...+..+.|+|||++++++.. ++...|++||..+++.......+... .+..++|++++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 33333444668999999999995555433 22337888888777765444433221 0456888999999999
Q ss_pred EEcCCeEEEE--eCCCCeEEEEeecCCCCCCccEE-EEeCCCCEEEEEECCCc--EEEEEcCCC
Q 001343 603 VGEDSQIKFW--DMDNVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTTADNG--FKILANAIG 661 (1096)
Q Consensus 603 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~--i~iwd~~~~ 661 (1096)
++. +.+++| |..+++ +..+..+.. .+..+ +++++.-.+++++.+.. |.+||+.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGPWT--EWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSSCC--EEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCCCC--eEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 998888 555555 555554432 56655 44444334444555544 455565555
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-14 Score=176.15 Aligned_cols=251 Identities=10% Similarity=-0.025 Sum_probs=176.6
Q ss_pred ccccccCCCCEEEEEEcCCCCEEEEE--ECCCeEEEEEccCCCccccceeecccccCEE---------EEEEe--cCCCc
Q 001343 399 ASIFKDVPISVSRVAWSPDGNYVGVA--FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN---------DLAFA--YPNKL 465 (1096)
Q Consensus 399 ~~~~~~h~~~V~~l~~spd~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~---------~l~~s--~d~~~ 465 (1096)
...+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~- 91 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGG- 91 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSS-
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCC-
Confidence 34577899999999999887777776 557899999975444333 4556666666 66676 9999
Q ss_pred EE-EEEEeC-CCcEEEEEcC--C-ceEEEeeC-----CCCCeEEEEeeecCCCcEEEEEECC----------CeEEEEEc
Q 001343 466 LC-VVTCGD-DKLIKVWELS--G-RKLFNFEG-----HEAPVYSICPHHKENIQFIFSTAID----------GKIKAWLY 525 (1096)
Q Consensus 466 ~~-l~s~s~-d~~i~iwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~iwd~ 525 (1096)
. |+.++. +..|.+|+.. + .....+.. |...+.+++|+| ||+.|++++.+ ..|.+||+
T Consensus 92 -~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~ 168 (662)
T 3azo_A 92 -PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPL 168 (662)
T ss_dssp -CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred -eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence 5 555443 5566666644 3 55566665 566788899977 67889888877 58999999
Q ss_pred CCC-----CeeeEEe-CCCCcEEEEEEcCCCCEEEEEeeccC----CCCeEEEEeCC-CC---eeeEEEcCcCccceEEE
Q 001343 526 DTM-----GSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNES-EG---TIKRTYAGFRKKSNGVV 591 (1096)
Q Consensus 526 ~~~-----~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~i~~~ 591 (1096)
.+. .....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++.. .+..+
T Consensus 169 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~ 247 (662)
T 3azo_A 169 DGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQA 247 (662)
T ss_dssp TSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEE
T ss_pred CCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcce
Confidence 872 2334444 45567888999999999998775321 12589999998 57 44444444333 77889
Q ss_pred EEeCCCCEEEEEEcCC--eEEEEeCCCCeEEEEeecCCCC------CCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 592 QFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGL------PNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 592 ~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.|+|+|++++++..++ .|++||..+++.......+... ..+..++|+|++.++++++. +.++||.+
T Consensus 248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 248 EWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred EECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 9999999777777777 6777777677655444332211 01467888888888888888 88888854
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-14 Score=157.29 Aligned_cols=263 Identities=10% Similarity=0.107 Sum_probs=178.3
Q ss_pred CCceEEEEEcCCCCcEEEEE--------eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 344 GSTVISMDFHPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg--------~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
-..+...++ ||++++.+. ..++.|.+||+.+++... + ..+.+++||
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~S 67 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRIS 67 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEEC
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEEC
Confidence 346788888 888644442 126689999998876431 2 468899999
Q ss_pred CCCCEEEEEECC---C--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-----------------
Q 001343 416 PDGNYVGVAFTK---H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----------------- 473 (1096)
Q Consensus 416 pd~~~l~s~~~d---g--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~----------------- 473 (1096)
|||++||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 68 pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
T 2gop_A 68 PDGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAW 140 (347)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC
T ss_pred CCCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEccccee
Confidence 999999987754 3 47888888765433 333344 99999999999 5666553
Q ss_pred ----------CCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC-------eEEEEEcCCCCeeeEEe
Q 001343 474 ----------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-------KIKAWLYDTMGSRVDYD 535 (1096)
Q Consensus 474 ----------d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~ 535 (1096)
...|++|| .+++.+..+.. . .+..+.|+| +| +++++..++ ...+|.++ ......+.
T Consensus 141 ~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~ 214 (347)
T 2gop_A 141 FDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMF 214 (347)
T ss_dssp ---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEE
T ss_pred ecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeC-CCceEEec
Confidence 25789999 56665355554 3 788888876 66 777776542 45566555 33333333
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeeccC----CCCeEEEEeCCCCeeeEEEcCcCccceEE-EEEeCCCCEEEEEEcCCeEE
Q 001343 536 APGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIK 610 (1096)
Q Consensus 536 ~~~~~i~~l~~s~~~~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~ 610 (1096)
.+ ..+..+ +|+|+.|+.++.... ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.++
T Consensus 215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEE
T ss_pred cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEE
Confidence 33 444444 999999987764221 135788998 5655444444433 5665 8898 88 888899999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE-EEEEcC
Q 001343 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF-KILANA 659 (1096)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~iwd~~ 659 (1096)
+| +.+++....... ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444433 23788999999 677777777665 778775
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-13 Score=147.77 Aligned_cols=245 Identities=12% Similarity=0.145 Sum_probs=178.2
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE-cCCCCEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-SPDGNYV 421 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spd~~~l 421 (1096)
+-..+.+++++|+|+ ++++.+.++.|.+||.. ++.+.... .. ....+|...+.++++ .++++++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~-----~~--------~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFG-----EC--------GKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEEC-----CB--------SSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEec-----cc--------CCCcccccCceEEEEEcCCCeEE
Confidence 445799999999998 78888889999999987 55442200 00 001235567899999 4677766
Q ss_pred EEEEC-CCeEEEEEccCCCccccceeec-ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee--CCCCCe
Q 001343 422 GVAFT-KHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHEAPV 497 (1096)
Q Consensus 422 ~s~~~-dg~i~vwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~~~v 497 (1096)
++... ++.|.+|| .+++.+.. +. .+...+.+++++++|+ ++++...++.|.+||.+++.+..+. ++...+
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~~---~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVRK---FGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEEE---ECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred EEcCCCCCEEEEEC-CCCcEEEE---ecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCc
Confidence 66543 78999999 45554442 32 3456789999999998 7888888899999997777777764 344568
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC--CcEEEEEEcCCCCEEEEEeeccCCCC-eEEEEeCCCC
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDS-FLVEWNESEG 574 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~l~~~~~~~~~~~-~i~iwd~~~~ 574 (1096)
.++++.+ ++.++++...++.|++||.. +.....+.... ..+..++++++|+.+++... ++ .|.+||. ++
T Consensus 167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~-~g 238 (286)
T 1q7f_A 167 NGVVVND--KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ-DG 238 (286)
T ss_dssp EEEEECS--SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT-TS
T ss_pred EEEEECC--CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC-CC
Confidence 8999866 56777777789999999974 44444554432 57899999999988777654 54 9999995 56
Q ss_pred eeeEEEcCcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 575 TIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 575 ~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
+.+..+..+.. ..+..++++|+|+.+++ +.++.|++|+....
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 66676655432 24678999999976666 67999999998653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=147.81 Aligned_cols=244 Identities=11% Similarity=0.100 Sum_probs=179.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccccee---ecccccCEEEEEEe-cCCCcEEEEEEeC-CCcEE
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ---IDAHVGAVNDLAFA-YPNKLLCVVTCGD-DKLIK 478 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---l~~h~~~v~~l~~s-~d~~~~~l~s~s~-d~~i~ 478 (1096)
++-..+.+++++++|+++++...++.|.+||.+ ++.+..+.. ..+|...+..+++. +++. ++++... ++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 355679999999999988888889999999987 444332111 02355678999995 6665 5555533 89999
Q ss_pred EEEcCCceEEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCCcEEEEEEcCCCCEEEE
Q 001343 479 VWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 479 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~ 555 (1096)
+||.+++.+..+.. +...+.++++.+ ++.++++...++.|.+||.. +.....+. .+...+..++++++|+.+++
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EECCCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 99977887777643 345688899866 66777777788999999964 34444443 23346899999999987766
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcC-ccceEEEEEeCCCCEEEEEEcCC-eEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
... ++.|++||. +++.+..+.... ...+..++++++|+.+++...++ .|.+|+. +++.+..+..+.....+.
T Consensus 181 ~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 181 DNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred ECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 554 789999997 456666665432 12577899999998888877775 9999996 566666666554433577
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
+++++|+|+++++ +.|+.|++|+...
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 9999999987776 6799999999754
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8e-13 Score=153.83 Aligned_cols=272 Identities=13% Similarity=0.087 Sum_probs=195.4
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcc--
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-- 436 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~-- 436 (1096)
++++...++.|.++|..+++.+.+ +. ....+..+.|||||+++++++.|+.|.+||+.
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~-------------------i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~ 228 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTV-------------------LD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 228 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEE-------------------EE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred EEEEeCCCCeEEEEECCCCeEEEE-------------------Ee-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 677778899999999999987753 11 23357799999999999999999999999995
Q ss_pred CCCccccceeecccccCEEEEEEe----cCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC----------CCC-CeEEE
Q 001343 437 GSNDLRQHSQIDAHVGAVNDLAFA----YPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG----------HEA-PVYSI 500 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h~~~v~~l~~s----~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~----------~~~-~v~~~ 500 (1096)
+++.+. ++.. ......++|+ |||+. ++++...+++|.++| .+.+.+..+.. |.. .+..+
T Consensus 229 t~~~v~---~i~~-G~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 229 EPTTVA---EIKI-GSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp SCCEEE---EEEC-CSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred CCcEeE---EEec-CCCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence 665554 3332 2346899999 69995 455566679999999 88888877642 112 56777
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
..++.. ..+++....+|.|.++|+......... .........+.|+|+|++++++.. ..+.|.++|..+++.+..
T Consensus 304 ~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~---~sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 304 LASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp EECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTTTEEEEE
T ss_pred EEcCCC-CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC---CCCeEEEEECCCCcEEEE
Confidence 776542 356666777899999998765543322 223345778899999999987764 277899999999998887
Q ss_pred EcC-cCcc-ceEEE-EEeCCCCEEEEEE--cCCeEEEEeCCC-------CeEEEEeecCCCCCCccEEEEeCCCCEEEEE
Q 001343 580 YAG-FRKK-SNGVV-QFDTTQNHFLAVG--EDSQIKFWDMDN-------VNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1096)
Q Consensus 580 ~~~-~~~~-~i~~~-~~~~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1096)
+.. .... +-... .++|++..+++.+ .++.|.++|..+ .+.+..+...+. .-..+..+|+++++.+.
T Consensus 380 i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~v~ 457 (567)
T 1qks_A 380 EDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLYVD 457 (567)
T ss_dssp EECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEEEE
T ss_pred EeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEEEe
Confidence 764 2211 10112 2578765555444 468999999987 567788776542 33557889999998887
Q ss_pred EC-------CCcEEEEEcCCC
Q 001343 648 TA-------DNGFKILANAIG 661 (1096)
Q Consensus 648 ~~-------dg~i~iwd~~~~ 661 (1096)
.. ...|.++|+.+.
T Consensus 458 ~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 458 ATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CTTCSSHHHHTCEEEEEGGGC
T ss_pred cCCCCCcccCceEEEEECCcc
Confidence 63 358899987653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-14 Score=154.62 Aligned_cols=245 Identities=10% Similarity=0.002 Sum_probs=181.0
Q ss_pred CCCEEEEEEcCCCCEEEEEECC------------------------CeEEEEEccCCCccccceeecccccCEEEEEEec
Q 001343 406 PISVSRVAWSPDGNYVGVAFTK------------------------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~ 461 (1096)
-+.|.+|+++|+|+++++...+ +.|.+||..+++..... -.++-.....+++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS--GKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE--CTTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc--CCCccCCceEEEECC
Confidence 4579999999999999888777 47999999888765421 124556899999999
Q ss_pred CCCcEEEEEEeCCCcEEEEEcCCc--eEEEe---------eCCCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcCCCC
Q 001343 462 PNKLLCVVTCGDDKLIKVWELSGR--KLFNF---------EGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMG 529 (1096)
Q Consensus 462 d~~~~~l~s~s~d~~i~iwd~~~~--~~~~~---------~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 529 (1096)
+|+ ++++...++.|++||.+++ .+..+ .++......+++.+. ++.++++.+ .++.|++|+. .+.
T Consensus 101 ~g~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~I~~~~~-~g~ 176 (329)
T 3fvz_A 101 DGN--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSRIVQFSP-SGK 176 (329)
T ss_dssp TSC--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCEEEEECT-TSC
T ss_pred CCC--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCeEEEEcC-CCC
Confidence 999 8888888999999996665 55655 244456889999653 456777776 6999999994 445
Q ss_pred eeeEEeCCC----------CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc-CccceEEEEEeCCCC
Q 001343 530 SRVDYDAPG----------HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQN 598 (1096)
Q Consensus 530 ~~~~~~~~~----------~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 598 (1096)
....+.... .....++++|++..++++.. +++.|++|+..+++.+..+... ....+..++++| +.
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~---~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~ 252 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR---ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF 252 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET---TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC---CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE
Confidence 544443221 24889999999444444432 3889999999989998888532 122577888998 33
Q ss_pred EEEEE-------EcCCeEEEEeCCCCeEEEEeec-CCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 599 HFLAV-------GEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 599 ~l~~~-------~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.+.+. ..+..|++|+..+++.+..+.. ..+...+..++++|+|.++++...++.|++|++..
T Consensus 253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 33332 2445899999999999888742 22334688999999998888888899999999854
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-15 Score=166.75 Aligned_cols=242 Identities=10% Similarity=-0.006 Sum_probs=161.5
Q ss_pred CEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCccccceeecccccC-EEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 408 SVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGA-VNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~l~~h~~~-v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
.+.+++|||||++|+.+... ..|.+||+.+++... +..+... ...+.|+|||+ .|+.++.++.|++|| .
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence 36778999999999877553 478888998876433 3333333 33478999999 888888899999999 6
Q ss_pred CCceEEEeeCCCCCeEE---EEe--------------eecCCCcEEEEE-----ECCCeEEEEEcCCCCeeeEEeCCCCc
Q 001343 483 SGRKLFNFEGHEAPVYS---ICP--------------HHKENIQFIFST-----AIDGKIKAWLYDTMGSRVDYDAPGHW 540 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~---~~~--------------~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~ 540 (1096)
.++.......+...... +++ ...++++.++.+ ..+..|.+||+.+++..... .+...
T Consensus 111 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~ 189 (396)
T 3c5m_A 111 TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAW 189 (396)
T ss_dssp TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSC
T ss_pred CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcc
Confidence 66655555544442222 111 112233444332 35678999999887655444 34557
Q ss_pred EEEEEEcC-CCCEEEEEeeccCC--CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC-----CeEEEE
Q 001343 541 CTTMLYSA-DGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFW 612 (1096)
Q Consensus 541 i~~l~~s~-~~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iw 612 (1096)
+..+.|+| +++.++.++..... ...|++||+.+++............+..+.|+|+|+.|+.++.+ +.|++|
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA 269 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence 89999999 88877776531110 15799999876654333232112357778999999988776543 459999
Q ss_pred eCCCCeEEEEeecCCCCCCccEEEEeC-CCCEEEEEE----------------CCCcEEEEEcCCC
Q 001343 613 DMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTT----------------ADNGFKILANAIG 661 (1096)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~ 661 (1096)
|+.+++......... .. +.|+| +|+++++++ .++.|.+||+.++
T Consensus 270 d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 270 NPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp CTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred ECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 999887655443322 23 89999 999888765 2467999998776
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-09 Score=133.00 Aligned_cols=585 Identities=9% Similarity=0.050 Sum_probs=331.4
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...|+++.-.++|. +=.|+.+| +..||-.+ ++.+...... . -.-....|.+|...++|...+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGYA--------FTVYQHNEDD----P--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSSC--------EEEECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCCc--------eEEEeCCCCC----C--CcccccceeEEEECCCCCEEE-
Confidence 35799999999996 33455665 56666432 1112110000 0 001246799999999987665
Q ss_pred EECCCeEEEEEccCCCccccceeecccc----cCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC-C-CCC
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-H-EAP 496 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~----~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~-~-~~~ 496 (1096)
|+.+| +..||..+++... +.... ..|.++...++|. +.+ ++. +.+..|| .+++. ..+.. + ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~-~~~~~~~~~~~ 173 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKF-IDDSFSTAMHK 173 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEE-ECSSSCHHHHT
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEE-EeccCCCCCCc
Confidence 55554 7889987654221 21111 1288898888886 444 444 5688999 54433 22211 1 112
Q ss_pred -eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 497 -VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 497 -v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
|.++.... ++ .+..++.++.|..|+..+.+..... ......|.++...+++...+.. . .+.+..||..++
T Consensus 174 ~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt-~----~~Gl~~~~~~~~ 245 (795)
T 4a2l_A 174 TIASTLYRQ--GD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVAT-E----GAGLFLINPKTK 245 (795)
T ss_dssp CCEEEEEEE--TT-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEE-B----SSCEEEEETTTT
T ss_pred ceEEEEECC--CC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEE-C----CCCeEEEeCCCC
Confidence 77777644 44 4555776656888887665443221 1234568888888887755543 2 445889998877
Q ss_pred eeeEEEcCc------CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC-----CCCCCccEEEEeCCCCE
Q 001343 575 TIKRTYAGF------RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----GGLPNLPRLRFSKEGNL 643 (1096)
Q Consensus 575 ~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~ 643 (1096)
+........ ....|.++...++|. +..|+.+ .|.+|+..++......... -....|.++...++|.+
T Consensus 246 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 323 (795)
T 4a2l_A 246 EIKNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM 323 (795)
T ss_dssp EEEEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE
T ss_pred eEEEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE
Confidence 654432211 123688888888776 4455555 6899998877655433211 11236889999888875
Q ss_pred EEEEECCCcEEEEEcCCCccccccccCC--CcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCc
Q 001343 644 LAVTTADNGFKILANAIGLRSLRAVENP--PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (1096)
Q Consensus 644 l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1096)
. .|+.++-|..|+..++. ...+... ........|.++...++|..-+.+.
T Consensus 324 W-igt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~------------------------- 375 (795)
T 4a2l_A 324 W-LGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTN------------------------- 375 (795)
T ss_dssp E-EEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEES-------------------------
T ss_pred E-EEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEEC-------------------------
Confidence 5 56677778888875541 1111111 1112233466677666666553333
Q ss_pred cCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCC--C--CCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCc
Q 001343 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE--S--TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (1096)
Q Consensus 722 ~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~--~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~ 797 (1096)
++.+..|+.. .+.+..+.... . ......|.++...+++..|..++.++-+..|+.....
T Consensus 376 -------------~~Gl~~~~~~----~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 376 -------------DGGLNLYNPI----TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp -------------SSCEEEECTT----TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred -------------CCCeEEEcCC----CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 2344555543 22333322110 0 0124679999998888735556665667777753211
Q ss_pred cCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeec------CC
Q 001343 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM------SP 871 (1096)
Q Consensus 798 ~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~------~h 871 (1096)
. ..+..... .+ ....|.++...++|++.+... +.+.+||..+++...... .+
T Consensus 439 ~------------~~~~~~~~-----~l----~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~ 496 (795)
T 4a2l_A 439 V------------ENFNQRNS-----QL----VNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVV 496 (795)
T ss_dssp E------------EEECTTTS-----CC----SCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCC
T ss_pred E------------EEeecCCC-----Cc----CCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccC
Confidence 1 11110000 01 345789999999998766555 568899987765543221 12
Q ss_pred CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEec
Q 001343 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE 951 (1096)
Q Consensus 872 ~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d 951 (1096)
...|.++...+ ++++.+.. . +-|..|+..++.. . .... ....+-....|.++...++|...+.+..
T Consensus 497 ~~~i~~i~~d~-~g~lWigt-~-~Gl~~~~~~~~~~-~--~~~~--------~~~~~l~~~~i~~i~~d~~g~lWigT~~ 562 (795)
T 4a2l_A 497 SKQITTLFRDS-HKRLWIGG-E-EGLSVFKQEGLDI-Q--KASI--------LPVSNVTKLFTNCIYEASNGIIWVGTRE 562 (795)
T ss_dssp CCCEEEEEECT-TCCEEEEE-S-SCEEEEEEETTEE-E--ECCC--------SCSCGGGGSCEEEEEECTTSCEEEEESS
T ss_pred CceEEEEEECC-CCCEEEEe-C-CceEEEeCCCCeE-E--EecC--------CCCCCCCCCeeEEEEECCCCCEEEEeCC
Confidence 35788999988 77655544 4 4588888877651 1 0000 0000001126788888899987666544
Q ss_pred ceEEEEEcccceeccccccCCCC-CCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccc
Q 001343 952 TQLAIYDASKMERIRQWTPQDAL-SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTV 1030 (1096)
Q Consensus 952 ~~i~iwd~~~~~~~~~~~~~~~~-~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 1030 (1096)
.|..||..+++... +...+++ ...|.++...++|.+.+++ . +-|..|+..++++... ....-++.. .+
T Consensus 563 -Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~~~-~~~dGl~~~------~f 631 (795)
T 4a2l_A 563 -GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFRNF-TESDGLQSN------QF 631 (795)
T ss_dssp -CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEEEE-CGGGTCSCS------CE
T ss_pred -CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEEEc-CCcCCCccc------cC
Confidence 78889987765432 2111111 4568888888889877644 3 4578899888765432 222212211 22
Q ss_pred cceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 1031 YPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 1031 ~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
..-++...+ +|.+++ |+.+| +..++...
T Consensus 632 ~~~~~~~~~-~G~l~~-g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 632 NTASYCRTS-VGQMYF-GGING-ITTFRPEL 659 (795)
T ss_dssp EEEEEEECT-TSCEEE-EETTE-EEEECGGG
T ss_pred ccCceeECC-CCeEEE-ecCCc-eEEEcHHH
Confidence 111356666 676555 55666 55566543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.5e-10 Score=137.77 Aligned_cols=536 Identities=8% Similarity=0.006 Sum_probs=308.2
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...|.++...++|. +.+ |+. +.+..||..+++...- ... ... ....|.++...++|.+.+
T Consensus 87 ~n~I~~i~~d~~g~-lWi-gT~-~Gl~~yd~~~~~f~~~------~~~---------~~~-~~~~i~~i~~d~~g~lwi- 146 (795)
T 4a2l_A 87 NDISRIVKTDSQGR-VWI-GTR-DGLSRYDEEKDIFQNF------FYE---------KNG-KHLQVNGIEEISPEQLLI- 146 (795)
T ss_dssp CSCEEEEEECTTSC-EEE-EES-SCEEEEETTTTEEEEE------CCE---------ETT-EECCCCEEEEEETTEEEE-
T ss_pred ccceeEEEECCCCC-EEE-EeC-CchheeCCCCCeEEec------ccc---------ccC-CCceEEEEEECCCCCEEE-
Confidence 35799999999998 443 445 4589999877654321 000 000 001188888888887665
Q ss_pred EECCCeEEEEEccCCCccccceeeccc-ccC-EEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe-eCCCCCeEE
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAH-VGA-VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAPVYS 499 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h-~~~-v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~~~~~v~~ 499 (1096)
++. +-|..||..+++.... ..++ ... |.++...+++. |..++.++-+..|| .+++..... ......|.+
T Consensus 147 ~t~-~gl~~~~~~~~~~~~~---~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 147 STP-EGLIMFDIKESKFIDD---SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp EET-TEEEEEETTTTEEECS---SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred EEC-CceEEEECCCCEEEec---cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 444 4588899876542211 0011 123 88898888886 44466665688999 555443221 123456888
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC-------CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
+.... ++ .|..|+.++-+..||..+.+....... ....|.++...++|...+.. .+-|.+||..
T Consensus 220 i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt------~~Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQS--PT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT------FNDLNIYHEG 290 (795)
T ss_dssp EEEEE--TT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE------SSCEEEEETT
T ss_pred EEEcC--CC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe------CChhheEcCC
Confidence 77644 44 455666554588888766543322111 13479999999888766544 2368899988
Q ss_pred CCeeeEEEcC------cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC----CCCCCccEEEEeCCCC
Q 001343 573 EGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE----GGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 573 ~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~ 642 (1096)
++........ .....|.++...++|. +..|+.++.|..|+..++......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7765443221 1223688888888775 667777788999987665433222111 0123688888888887
Q ss_pred EEEEEECCCcEEEEEcCCCccccccccCCC---c-ccccCcceeEEeecCCC-eEEecCCCCceeEeccCCCcCCCcccC
Q 001343 643 LLAVTTADNGFKILANAIGLRSLRAVENPP---F-EALRTPIESVALKVSAS-SAVSSGTPANCKVERSSPVRPSPIING 717 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~-~~~~~~v~~~~~s~~g~-~lv~~~s~~~~~~~~~~~~~~~~~~~~ 717 (1096)
+. .|+.++-|..|+..++. . ..+.... . ......|.++...++|+ ..+++..
T Consensus 370 lW-iGt~~~Gl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~-------------------- 426 (795)
T 4a2l_A 370 LW-IGTNDGGLNLYNPITQR-F-TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA-------------------- 426 (795)
T ss_dssp EE-EEESSSCEEEECTTTCC-E-EEECCC------CCSCSCEEEEEEETTTTEEEEEETT--------------------
T ss_pred EE-EEECCCCeEEEcCCCCc-E-EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc--------------------
Confidence 55 57777779999887652 1 1111110 0 11223466677776666 4433322
Q ss_pred CCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCc
Q 001343 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (1096)
Q Consensus 718 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~ 797 (1096)
+.+..++.. ++.+..+...........|.++...++|...+ ++.+ .+.+|+.....
T Consensus 427 ------------------~Gl~~~d~~----~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~ 482 (795)
T 4a2l_A 427 ------------------GGLSILHRN----SGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRS 482 (795)
T ss_dssp ------------------TEEEEEETT----TCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTE
T ss_pred ------------------CceeEEeCC----CCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCe
Confidence 334445443 23333332111112456789999888888444 4444 46667643211
Q ss_pred cCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeec-------C
Q 001343 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-------S 870 (1096)
Q Consensus 798 ~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~-------~ 870 (1096)
. ..+... . ...+ -....|.++...++|++.+... +.|..||..+++. .+. .
T Consensus 483 ~------------~~~~~~-~-----~~~~-~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l 540 (795)
T 4a2l_A 483 F------------TTIEKE-K-----DGTP-VVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNV 540 (795)
T ss_dssp E------------EECCBC-T-----TCCB-CCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGG
T ss_pred E------------EEcccc-c-----cccc-cCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCC
Confidence 1 000000 0 0000 0246789999999998776655 6688999877665 222 1
Q ss_pred CCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEe
Q 001343 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 950 (1096)
Q Consensus 871 h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~ 950 (1096)
+...|.++...+ ++++.+. +.. -+..||..+++.. ......+-....|.++...++|.+.+++
T Consensus 541 ~~~~i~~i~~d~-~g~lWig-T~~-Gl~~~d~~~~~~~-------------~~~~~~gl~~~~i~~i~~d~~g~lWi~t- 603 (795)
T 4a2l_A 541 TKLFTNCIYEAS-NGIIWVG-TRE-GFYCFNEKDKQIK-------------RYNTTNGLPNNVVYGILEDSFGRLWLST- 603 (795)
T ss_dssp GGSCEEEEEECT-TSCEEEE-ESS-CEEEEETTTTEEE-------------EECGGGTCSCSCEEEEEECTTSCEEEEE-
T ss_pred CCCeeEEEEECC-CCCEEEE-eCC-CceeECCCCCcEE-------------EeCCCCCCchhheEEEEECCCCCEEEEc-
Confidence 235688999888 7775554 444 4788887766511 1111112111267888888889876665
Q ss_pred cceEEEEEcccceeccccccCCCCC-CCc--eEEEEeeCCcEEEEEecCCcEEEEecC
Q 001343 951 ETQLAIYDASKMERIRQWTPQDALS-API--SCAVYSCNSQLVFATFCDGNIGVFDAD 1005 (1096)
Q Consensus 951 d~~i~iwd~~~~~~~~~~~~~~~~~-~~i--~~l~~s~dg~~la~~~~dg~i~vwd~~ 1005 (1096)
++.|..|+..+++.. .+...+++. ..+ .++...++|++++ |+.+|- ..++.+
T Consensus 604 ~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl-~~~~p~ 658 (795)
T 4a2l_A 604 NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-GGINGI-TTFRPE 658 (795)
T ss_dssp TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-EETTEE-EEECGG
T ss_pred CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-ecCCce-EEEcHH
Confidence 567888898876643 222211112 222 4666678887766 677774 445543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-13 Score=146.28 Aligned_cols=272 Identities=10% Similarity=0.018 Sum_probs=185.1
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
..|.+++|+|++.. ++..+.++.++.|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 35788899999874 66667788899992 333221 44566678999999999988888
Q ss_pred ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC----CcEEEEE-cCCceEEEee--CCCCCe
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLFNFE--GHEAPV 497 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d----~~i~iwd-~~~~~~~~~~--~~~~~v 497 (1096)
..++.|.+||.++++... ....+...+.+++|+++|+ ++++...+ +.|.+|| ..+.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876433 1224667899999999998 67776666 6899999 5554432332 244568
Q ss_pred EEEEeeecCCCcEEEEEEC------CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 498 YSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.++++.+ +|.++++... .+.|..+|..+.+... +......+..++|+|+|+.++.+.. .++.|++||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8898866 5666665543 2455555544433322 2222335789999999997765542 2678999998
Q ss_pred CC-CeeeEEE------cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC----CCCccEEEEeCC
Q 001343 572 SE-GTIKRTY------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG----LPNLPRLRFSKE 640 (1096)
Q Consensus 572 ~~-~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~ 640 (1096)
.+ +.....+ .......+..++++++|+.+++...++.|.+||. .++.+..+..... ...+.+++|+|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 63 3322211 1111125677999999998887778899999998 5666666654321 114789999999
Q ss_pred CCEEEEEECCC
Q 001343 641 GNLLAVTTADN 651 (1096)
Q Consensus 641 ~~~l~~~~~dg 651 (1096)
+..|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 87777666553
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-13 Score=162.25 Aligned_cols=249 Identities=9% Similarity=-0.006 Sum_probs=175.3
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCC-----eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc-
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~- 476 (1096)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+ ....+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCcc
Confidence 34556799999999999999876543 899999999876542 12 222367899999999 7777777765
Q ss_pred ---------------EEEEE-cCCce--EEEee--CCCCCeEEEEeeecCCCcEEEEEEC-----CCeEEEEEcCC----
Q 001343 477 ---------------IKVWE-LSGRK--LFNFE--GHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYDT---- 527 (1096)
Q Consensus 477 ---------------i~iwd-~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~---- 527 (1096)
|++|+ .++.. ...+. .|...+..+.|+| ||++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999 55542 22223 3455677888866 6788887765 56899999986
Q ss_pred --CC-eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee--eEEEcCcCc-cceEEEEEeCCCCEEE
Q 001343 528 --MG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRK-KSNGVVQFDTTQNHFL 601 (1096)
Q Consensus 528 --~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~-~~i~~~~~~~~~~~l~ 601 (1096)
+. ....+..+...+.. .|+++|+.++..+........|.+||+.++.. .+.+..+.. ..+..+.|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 43 34455555554444 48899998887765333356899999988742 344444433 3677788887777778
Q ss_pred EEEcCCe--EEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE----CCCcEEEEEcCCCc
Q 001343 602 AVGEDSQ--IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT----ADNGFKILANAIGL 662 (1096)
Q Consensus 602 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~ 662 (1096)
+...++. |++|++.+++.+..+..+. ..+..++++|++..++... ..+.|..||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~--~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCCC--ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888874 6677876787777776653 3678889999987666443 24789999998763
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-08 Score=124.68 Aligned_cols=591 Identities=11% Similarity=0.069 Sum_probs=327.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...|+|+.-.++|. +=.|+.+| +..||-.+ ++.+..... . ... ..-....|.+|.-.++|..|-+
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~-~-~~~--~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEEQ-S-SSV--QSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCSS-C-SSS--CCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCCC-C-Ccc--ccccccccceEEEcCCCCEEEE
Confidence 45799999999996 33455665 66677432 111111000 0 000 0012356999999998884556
Q ss_pred EECCCeEEEEEccCCCcccccee-ec---ccccCEEEEEEec--CCCcEEEEEEeCCCcEEEEEcCCceEEEeeC-----
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQ-ID---AHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWELSGRKLFNFEG----- 492 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~-l~---~h~~~v~~l~~s~--d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----- 492 (1096)
|+.++-+..||..+++....... .. -....|.++.... ++. |..++.++.+..+|........+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77775689999887543211000 00 0123688888877 664 4556655668889943333334321
Q ss_pred -CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-------eCCCCcEEEEEEcCCCCEEEEEeeccCCCC
Q 001343 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1096)
Q Consensus 493 -~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~ 564 (1096)
....|.++.... ++ .|..++.++-|..||..+.+..... ......|.++...++|...+.. .+
T Consensus 160 l~~~~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt------~~ 230 (781)
T 3v9f_A 160 LPSEQTWTATEAE--DG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT------SK 230 (781)
T ss_dssp CSCCCEEEEEEEE--TT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEE------TT
T ss_pred CCccceEEEEECC--CC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe------CC
Confidence 134577776643 43 4666777756888887665432211 1123468999998888766653 33
Q ss_pred eEEEEeCCCCeeeEEEcC------cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee-------cC-----
Q 001343 565 FLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-------AE----- 626 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~----- 626 (1096)
-+.+||..+++....... .....|.++...++| .+..|+..+.|.+++..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 789999887765432211 122367778877765 46667775678899987765432221 10
Q ss_pred CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccC-----CCcccccCcceeEEeecCCCeEEecCCCCce
Q 001343 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN-----PPFEALRTPIESVALKVSASSAVSSGTPANC 701 (1096)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~ 701 (1096)
-....|.++...++|.+. .|+.++-|..++..+.. ...+.. .........|.++...++|...+++..
T Consensus 310 l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~---- 382 (781)
T 3v9f_A 310 LSNASARYIFQDSFNNIW-IGTWGGGINFISNAPPT--FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDG---- 382 (781)
T ss_dssp BSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCS--CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBS----
T ss_pred CCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCc--ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCC----
Confidence 112368888888888654 56666778888876542 111110 011112334666666666655433322
Q ss_pred eEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEE
Q 001343 702 KVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLA 781 (1096)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 781 (1096)
+.+..|+... +....+..+. ......|.++...+++. |..
T Consensus 383 ----------------------------------~Gl~~~~~~~----~~~~~~~~~~-~~~~~~v~~i~~d~~g~-lWi 422 (781)
T 3v9f_A 383 ----------------------------------GGINVFENGK----RVAIYNKENR-ELLSNSVLCSLKDSEGN-LWF 422 (781)
T ss_dssp ----------------------------------SCEEEEETTE----EEEECC------CCCSBEEEEEECTTSC-EEE
T ss_pred ----------------------------------CcEEEEECCC----CeEEEccCCC-CCCCcceEEEEECCCCC-EEE
Confidence 3344444321 1111100000 11446789998888887 555
Q ss_pred eecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEccc
Q 001343 782 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMT 861 (1096)
Q Consensus 782 ~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~ 861 (1096)
++.++.+..++... ++.......+ .....|.++...++|++.+... +.|.+||..+
T Consensus 423 gt~~~Gl~~~~~~~----------------------~~~~~~~~~~-~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~ 478 (781)
T 3v9f_A 423 GTYLGNISYYNTRL----------------------KKFQIIELEK-NELLDVRVFYEDKNKKIWIGTH-AGVFVIDLAS 478 (781)
T ss_dssp EETTEEEEEECSSS----------------------CEEEECCSTT-TCCCCEEEEEECTTSEEEEEET-TEEEEEESSS
T ss_pred EeccCCEEEEcCCC----------------------CcEEEeccCC-CCCCeEEEEEECCCCCEEEEEC-CceEEEeCCC
Confidence 66555666665422 1111100000 0346788999998888666554 6799999877
Q ss_pred ceEEEeecCC-----CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCce
Q 001343 862 FKVMTTFMSP-----PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTR 936 (1096)
Q Consensus 862 ~~~~~~~~~h-----~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~ 936 (1096)
++........ ...|.++...+ ++++.+ |+.++-+..|+..+++.. ......+-....|.+
T Consensus 479 ~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~-------------~~~~~~~l~~~~i~~ 543 (781)
T 3v9f_A 479 KKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVR-------------KFNQYEGFCSNTINQ 543 (781)
T ss_dssp SSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEE-------------EECTTTTCSCSCEEE
T ss_pred CeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEE-------------EccCCCCCCCCeeEE
Confidence 6543322212 35788999888 776554 555334777887665410 111111111136888
Q ss_pred EEEecCCcEEEEEecceEEEEEcccceeccccccCCCC-CCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEcc
Q 001343 937 VQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDAL-SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1015 (1096)
Q Consensus 937 v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~ 1015 (1096)
+...++|...+.+..|.+..||..+++.. .+...+++ ...|.++...++|.+.++ +.+| |..|+..++++... ..
T Consensus 544 i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~~~-~~ 619 (781)
T 3v9f_A 544 IYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFYTY-DH 619 (781)
T ss_dssp EEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEEEE-CG
T ss_pred EEECCCCCEEEEECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceEEe-cc
Confidence 99889998777755555488998776532 22111111 456888988888987664 4555 77789887765433 21
Q ss_pred ccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 1016 STYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 1016 ~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
..-++.. .-... ++...+ +|.+++ |+.+| +..++...
T Consensus 620 ~dGl~~~----~f~~~--~~~~~~-~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 620 SNNIPQG----SFISG--CVTKDH-NGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp GGTCCSS----CEEEE--EEEECT-TSCEEE-EETTE-EEEECSCC
T ss_pred cCCcccc----ccccC--ceEECC-CCEEEE-ECCCc-eEEEChhh
Confidence 2211111 11112 355566 666554 66676 55667554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-12 Score=138.71 Aligned_cols=243 Identities=11% Similarity=0.069 Sum_probs=182.0
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC-CCEEEEEEcCCCCEEEEEECCCeEEEEEccC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~ 437 (1096)
+|++++.++.|.+||.++|+.+.+ +..+. ..+.++.++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 799999999999999999998754 23333 4688999999999998 45778999999 7
Q ss_pred CCccccceeeccc-ccCEEEEEEecCCCcEEEEEEeC-CCcEEEEEcCCceEEEeeC------CCCCeEEEEeeecCCCc
Q 001343 438 SNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWELSGRKLFNFEG------HEAPVYSICPHHKENIQ 509 (1096)
Q Consensus 438 ~~~~~~~~~l~~h-~~~v~~l~~s~d~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~ 509 (1096)
|+.+.. +..+ ...+.++.+.++|+ ++++.+. ++.|..+|.+|+.+..+.. +......+++ ..+|+
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~ 137 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK--NKKGN 137 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE--CTTSC
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE--CCCCC
Confidence 776653 4333 35788999999999 7888776 7888888888988877652 1123334444 44788
Q ss_pred EEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc----
Q 001343 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---- 585 (1096)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---- 585 (1096)
++++...++.|..||.+ ++.+..+.... .+.++.+.++|+.++++.. ++.|..+|..+|+.+.++.....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 99999999999999988 88888877653 4556788899999988764 67899999999999999864321
Q ss_pred -cceEEEEEeCCCCEEEEEEcC--------CeEEEEeC-CCCeEEEEeecCCCCCCccEEE
Q 001343 586 -KSNGVVQFDTTQNHFLAVGED--------SQIKFWDM-DNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 586 -~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
..+..+...++|+.+++.... +..+++.+ .+++.+..+........+..++
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136678888999888876421 23355555 4778888887766666666654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-12 Score=159.13 Aligned_cols=247 Identities=9% Similarity=-0.002 Sum_probs=171.1
Q ss_pred CCCceEEEEEcCCCCcEEEEEeC-CC----eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSS-NG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~-dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
|...+..++|||||++ ||.++. +| .|++||+.+++.+.. .+. ...+..++|+||
T Consensus 123 ~~~~~~~~~~SPDg~~-la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~--~~~~~~~~wspD 181 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEY-FAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLE--RVKFSCMAWTHD 181 (710)
T ss_dssp SCEEEEEEEECTTSSE-EEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEE--EECSCCEEECTT
T ss_pred CCEEEEEEEECCCCCE-EEEEEcCCCCceEEEEEEECCCCCCCcc------------------ccc--CcccceEEEEeC
Confidence 4446899999999995 555444 33 899999999886531 011 112567999999
Q ss_pred CCEEEEEECCCe----------------EEEEEccCCCccc-cceeecccccCEEEEEEecCCCcEEEEEEeC-----CC
Q 001343 418 GNYVGVAFTKHL----------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DK 475 (1096)
Q Consensus 418 ~~~l~s~~~dg~----------------i~vwd~~~~~~~~-~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-----d~ 475 (1096)
|+.|+.++.++. |++|++.+++... .......|...+..+.|+|||+ +|+.++. +.
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR--YVLLSIREGCDPVN 259 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECSSSSCC
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC--EEEEEEEccCCCcc
Confidence 999999988765 9999998875321 1112233566788999999999 5555543 67
Q ss_pred cEEEEE-cC------Cc-eEEEeeCCCCCeEEEEeeecCCCcEEEEEECC----CeEEEEEcCCCCe--eeEEeCCCC--
Q 001343 476 LIKVWE-LS------GR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGS--RVDYDAPGH-- 539 (1096)
Q Consensus 476 ~i~iwd-~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~~-- 539 (1096)
.|++|| .+ +. ....+..+...+... |.+ +|..|+..+.. +.|.+||+.+... ...+..+..
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence 899999 54 43 466677776666553 555 44555555443 3699999987642 234444433
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE----cCCeEEEEeCC
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMD 615 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~ 615 (1096)
.+..++|++++.++++... ++...|++|++.+++.++.+..+.. .+..+.++|++..++... ..+.|+.||+.
T Consensus 337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 6888999877666666654 2233678889878887788877744 677788999887766443 35789999998
Q ss_pred CCe
Q 001343 616 NVN 618 (1096)
Q Consensus 616 ~~~ 618 (1096)
+++
T Consensus 414 tg~ 416 (710)
T 2xdw_A 414 KEE 416 (710)
T ss_dssp SSS
T ss_pred CCc
Confidence 876
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-11 Score=131.76 Aligned_cols=282 Identities=9% Similarity=-0.050 Sum_probs=193.8
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
+...+.+++++++|+ ++++...++.|.+||.. ++.... .+..+...+.+++++++|+.++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 456899999999998 66665557899999987 553321 0122456799999999999888
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEE-eeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~ 501 (1096)
+...++.|..||.+ ++ .... .+......+.++++.+++. ++++...++.|.+||.+++.... ...+...+..++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence 77778899999976 33 2211 2223456789999999998 77777778899999975544322 233445688888
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeE-EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
+.+ ++.++++...++.|..||. +++.... .......+..++++++|+..++... .+.|..||. +++.....
T Consensus 148 ~~~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 148 LGS--DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEFK 219 (299)
T ss_dssp ECT--TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred EcC--CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEEE
Confidence 855 5667766666789999998 4443322 2233456889999999986666543 678999999 66644321
Q ss_pred cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.......+..++++++|+.+++...++.|..||. ++.. ..+........+.++++ +++.++++.. .+.+..++..+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 2212236778999999886666557789999998 4543 33433333347889999 8888776655 56677777654
Q ss_pred C
Q 001343 661 G 661 (1096)
Q Consensus 661 ~ 661 (1096)
+
T Consensus 296 ~ 296 (299)
T 2z2n_A 296 D 296 (299)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-12 Score=139.12 Aligned_cols=242 Identities=7% Similarity=0.001 Sum_probs=173.3
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.+++++|+|+++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~l~ 83 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGHLI 83 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCCEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCcEE
Confidence 356678999999999867888889999999999876 221 33466789999999999988
Q ss_pred EEEECCCeEEEEEccCCCccccceeecc-cccCEEEEEEecCCCcEEEEEE----e-------------CCCcEEEEEcC
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTC----G-------------DDKLIKVWELS 483 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~----s-------------~d~~i~iwd~~ 483 (1096)
++...++.|.+||..+++.........+ ....+..++++|+|+ ++++. + ..+.|..++..
T Consensus 84 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 84 ACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC
Confidence 8777778999999987764321111111 123567899999998 77763 2 13456666644
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC-CCCe---eeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGS---RVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
++ +..+..+......++|++ +++.+++.+.++.|.+|++. .+.. ...+......+..++++++|+..++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 445555666788999966 66777777788999999987 3332 22333334456789999999866654
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEE-eCCCCEEEEEEcCCeEEEEeCCCCeE
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1096)
++.|.+||.. ++.+..+..+.. +..++| +|+++.|++++.+ .+.-++..+...
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 5689999986 777777776654 667888 5888889888875 566667666543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-12 Score=140.71 Aligned_cols=276 Identities=11% Similarity=-0.011 Sum_probs=187.9
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccc
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~ 444 (1096)
.+++|.+||..+++..... +... --.........+++. +++.+++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~~~---------n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FYRA---------NGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HHHH---------HSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhh----Hhhh---------cCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3789999999998865421 0000 001122456778774 344555555678999999999887664
Q ss_pred eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC-----CCeEEEEeeecCCCcEEEEEE-CC
Q 001343 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE-----APVYSICPHHKENIQFIFSTA-ID 517 (1096)
Q Consensus 445 ~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~d 517 (1096)
+. .......++++++++ +.++...++.|.+|| .+++....+.... .....+++ . ++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 32 346789999999985 666665899999999 7787776665433 14456666 2 334444433 48
Q ss_pred CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC------CCeEEEEeCCCCeeeEEEcCcCccceEEE
Q 001343 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG------DSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (1096)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 591 (1096)
+.|.+||..+.+....+... .....++++++|++++++...... .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 99999999988777666543 345688999999876665431000 26899999999998877764433357789
Q ss_pred EEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CCCEEEEE----ECCCcEEEEEcCCCccccc
Q 001343 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVT----TADNGFKILANAIGLRSLR 666 (1096)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~ 666 (1096)
+++|+++.++++.. .|++||..+++................++++| ++.++++. ..++.|.+||.. + +.+.
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~ 306 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLID 306 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEE
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEE
Confidence 99999999888755 89999998877532111111123678999999 56666665 568899999987 5 3443
Q ss_pred cc
Q 001343 667 AV 668 (1096)
Q Consensus 667 ~~ 668 (1096)
.+
T Consensus 307 ~i 308 (328)
T 3dsm_A 307 EF 308 (328)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-13 Score=162.16 Aligned_cols=248 Identities=10% Similarity=-0.058 Sum_probs=166.4
Q ss_pred ccCCCCEEEEEEcCCCCEEEEE-----ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc-
Q 001343 403 KDVPISVSRVAWSPDGNYVGVA-----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~- 476 (1096)
.+|...+..++|||||++||.+ +.+..|++||+.+++.+... .+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 4567789999999999999943 34568999999998765110 12111 126899999999 7888888776
Q ss_pred ------------EEEEE-cCCc----eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC----eEEEEEcCCCCeeeEEe
Q 001343 477 ------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG----KIKAWLYDTMGSRVDYD 535 (1096)
Q Consensus 477 ------------i~iwd-~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~ 535 (1096)
|++|+ .++. .+.....|...+.++.|+| +|++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 99999 5554 3334444556788888866 667887777665 56666544433 33444
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee---eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEE
Q 001343 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612 (1096)
Q Consensus 536 ~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 612 (1096)
.+...+....+ ++|. ++..+.....++.|++||+.++.. ...+..+....+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 44445555556 6677 555543222468999999988753 333433324367778887 66777888889988888
Q ss_pred eCC-CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC----CCcEEEEEcCCCc
Q 001343 613 DMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (1096)
Q Consensus 613 d~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 662 (1096)
.+. .++....+..+. ...+..++++|++..++.... .++|++||+.++.
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 665 355555555432 235778889999877764433 4689999998773
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-13 Score=162.86 Aligned_cols=248 Identities=6% Similarity=-0.072 Sum_probs=162.6
Q ss_pred CCCceEEEEEcCCCCcEEEEE----eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCC
Q 001343 343 QGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg----~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 418 (1096)
|...+.+++|||||++++++. +.+..|++||+.+++.+... .+.+. ....++|+|||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-----------------~~~~~--~~~~~~wspDg 179 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-----------------VIEGG--KYATPKWTPDS 179 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-----------------CBSCC--TTCCCEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-----------------ccCcc--cccceEEecCC
Confidence 555799999999999533333 33468999999998764110 01111 12578999999
Q ss_pred CEEEEEECCCe-------------EEEEEccCCCcc-ccceeecccccCEEEEEEecCCCcEEEEEEeCCC----cEEEE
Q 001343 419 NYVGVAFTKHL-------------IQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK----LIKVW 480 (1096)
Q Consensus 419 ~~l~s~~~dg~-------------i~vwd~~~~~~~-~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~----~i~iw 480 (1096)
+.|+.++.|.. |++|++.++... ..+.....|...+..+.|+|||+ +|+.++.++ .|++|
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--YLFVYILRGWSENDVYWK 257 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC--CEEEEEEETTTEEEEEEE
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC--EEEEEEeCCCCceEEEEE
Confidence 99999988766 999999987632 12222345667899999999999 555555454 67777
Q ss_pred EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE---CCCeEEEEEcCCCCe--eeEEeCC--CCcEEEEEEcCCCCEE
Q 001343 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS--RVDYDAP--GHWCTTMLYSADGSRL 553 (1096)
Q Consensus 481 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~i~~l~~s~~~~~l 553 (1096)
+..+.....+..+...+....+ + ++.+++... .++.|.+||+.++.. ...+..+ ...+..++++ ++..+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 258 RPGEKDFRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp CTTCSSCEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred cCCCCceEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 7333344555556656666555 3 344444443 258899999987653 2233332 4467888888 56666
Q ss_pred EEEeeccCCCCeEEEEeCC-CCeeeEEEcCcCccceEEEEEeCCCCEEEEEE----cCCeEEEEeCCCCeE
Q 001343 554 FSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1096)
++... ++..++|.+. +++..+.+..+....+..+.++|++..++... ..++|++||+.+++.
T Consensus 334 ~~~~~----dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 334 LEYLK----DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEE----TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEE----CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66665 6655555443 35556666655333566678889887776443 347899999988774
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-12 Score=139.06 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=168.0
Q ss_pred cccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
+..+.....+++|+|+|+ .++++..++.|..||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445667789999999998 7778888899999999886 33 3556778899999999998 77777777899999
Q ss_pred E-cCCceEEEeeCC----CCCeEEEEeeecCCCcEEEEEEC-----------------CCeEEEEEcCCCCeeeEEeCCC
Q 001343 481 E-LSGRKLFNFEGH----EAPVYSICPHHKENIQFIFSTAI-----------------DGKIKAWLYDTMGSRVDYDAPG 538 (1096)
Q Consensus 481 d-~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~ 538 (1096)
| .+++........ ...+..+++.+ +|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 9 577754433221 22456788865 6677776321 2344444433 4444445555
Q ss_pred CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC-CCee---eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 539 ~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
.....++|+|+++.+++... ++.|++|++. +++. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 67889999999999854443 7899999986 5554 3444 2222245668999999866655 789999998
Q ss_pred CCCeEEEEeecCCCCCCccEEEE-eCCCCEEEEEECCCcEEEEEcCCC
Q 001343 615 DNVNILTSTDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
. ++.+..+..+.. +.+++| .|+++.|++++.++ +.-++..+.
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 6 777777765542 789999 58999999888764 444455443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-12 Score=137.18 Aligned_cols=239 Identities=7% Similarity=-0.059 Sum_probs=166.1
Q ss_pred ceEEEEEcCCCCcEEE-EEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 346 TVISMDFHPSHQTLLL-VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 346 ~V~~v~fsp~g~~lla-sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
...+++++|+|+ +++ +.+.++.|.+||..++..... ...+...+.+++++++|+.+++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 677 546789999999765543210 11233467889999999966655
Q ss_pred ECCCeEEEEEccCCCccccceeec-ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEe
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~ 502 (1096)
. ++.|.+||..++.... +. .....+.++++.++|+ ++++...++.|.+|+ .+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987654321 22 2335789999999998 777777789999998 444333222233345778888
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
.+ ++.++++...++.|.+||................+..++++++|...++... ++.|.+|+..+..... ...
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEE-CCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCccee-ecc
Confidence 65 5667777677889999998765544332233357899999999966666543 7789999987654433 222
Q ss_pred cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 583 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
.....+..++++++|+.+++...++.|++++....+
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 111257789999999988888889999999987644
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-11 Score=134.79 Aligned_cols=236 Identities=11% Similarity=0.032 Sum_probs=163.3
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.+...+.+++|+|+|+ +++++..++.|.+||..+++.... ...+...+.+++|+|+|+++
T Consensus 42 ~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~~~~dg~l~ 101 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLF 101 (333)
T ss_dssp SSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEE
T ss_pred ccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEEECCCCcEE
Confidence 3667889999999998 788888899999999988765421 22355789999999999988
Q ss_pred EEEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC------CCcEEEEEcCCceEEEee
Q 001343 422 GVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFE 491 (1096)
Q Consensus 422 ~s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~ 491 (1096)
++...+ +.|.+||.+++...... .-..+...+.+++++|+|+ ++++... .+.|..+|..+..+..+.
T Consensus 102 v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 102 VCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred EEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence 877666 68999999886543211 1113456799999999998 6666553 355666664333333333
Q ss_pred CCCCCeEEEEeeecCCCcEE-EEEECCCeEEEEEcCCC-CeeeE------EeCC-CCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 492 GHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTM-GSRVD------YDAP-GHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~-~~~~~------~~~~-~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+...+..++|++ ++..+ ++.+.++.|.+||+++. ..... .... ...+..++++++|+..++...
T Consensus 179 ~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~---- 252 (333)
T 2dg1_A 179 QNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG---- 252 (333)
T ss_dssp EEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----
T ss_pred cCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC----
Confidence 3344578888866 56655 45556889999999642 22211 1111 136788999999997776653
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCcc-----ceEEEEEeCCCCEEEEEEcCC
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKK-----SNGVVQFDTTQNHFLAVGEDS 607 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg 607 (1096)
++.|.+||. +++.+..+..+... .+..++|+++++.|++++.++
T Consensus 253 ~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 253 QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 678999998 56666666544321 467789999987887766553
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-10 Score=124.69 Aligned_cols=239 Identities=10% Similarity=0.016 Sum_probs=169.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcC
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS 483 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 483 (1096)
.+...+.+++++++|+.+++...++.|.+||.. ++... . .+..+...+.++++.++|. +.++...++.|..||..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-Y-PLPTPDAKVMCLTISSDGE--VWFTENAANKIGRITKK 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-E-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-e-cCCcccCceeeEEECCCCC--EEEeCCCCCeEEEECCC
Confidence 355689999999999988776667899999988 44322 1 1233557899999999998 77777778899999954
Q ss_pred CceEEEee--CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 484 GRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 484 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
++. ..+. .....+.++++.+ ++.++++...++.|..||. ++.... ........+..+++.++|+..++...
T Consensus 87 g~~-~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-- 160 (299)
T 2z2n_A 87 GII-KEYTLPNPDSAPYGITEGP--NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ-- 160 (299)
T ss_dssp SCE-EEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT--
T ss_pred CcE-EEEeCCCcCCCceeeEECC--CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC--
Confidence 543 2332 2455688888865 6677777777889999988 433332 22234457899999999987776543
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
.+.|..||. +++............+..+++++++..+++...++.|.+|+. +++... +........+.+++++++
T Consensus 161 --~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 161 --NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAG 235 (299)
T ss_dssp --TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECST
T ss_pred --CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCC
Confidence 678999998 666554322222235778999999887666666889999999 665443 333323346889999999
Q ss_pred CCEEEEEECCCcEEEEEc
Q 001343 641 GNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd~ 658 (1096)
|+++++...++.|..|+.
T Consensus 236 g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TCEEEEETTTTEEEEEET
T ss_pred CCEEEeccCCceEEEECC
Confidence 987766656788888886
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-10 Score=124.75 Aligned_cols=279 Identities=9% Similarity=-0.046 Sum_probs=191.2
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
....+.++++.++|+ ++++...++.|.+||.. ++.... . +..+...+.+++++++|++++
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~---~---------------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF---E---------------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE---E---------------CSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE---E---------------CCCCCCcceeEEECCCCCEEE
Confidence 456889999999998 67766678999999987 554320 0 222346799999999999887
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEE-eeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~ 501 (1096)
+...++.|..||.. ++... . .+......+.++++.+++. ++++...++.|..+|..++.... +......+.+++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~-~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTE-Y-PLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EETTTTEEEEECTT-SCEEE-E-ECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred EecCCCeEEEECCC-CCeEE-e-cCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEE
Confidence 77667899999987 54321 1 2333446789999999998 77777768899999944665422 233445678888
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
+.+ ++.+.++...++.|..||. ++.... ........+..+++.++|+..++... .+.|..|+. +++.....
T Consensus 153 ~d~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LGS--DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEYD 224 (300)
T ss_dssp ECT--TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred ECC--CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEEE
Confidence 855 5666666666789999987 333332 22233447899999999976666543 668999998 55544332
Q ss_pred cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.......+..++++++|+..++...++.|..|+. ++... .+........+.++++.++|+++++.. . .|..++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2212235778999999886666656789999998 44433 333332234689999999998666554 4 6666664
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.3e-12 Score=138.04 Aligned_cols=224 Identities=11% Similarity=0.085 Sum_probs=147.0
Q ss_pred CceEEEEEcCCCCcEEEEEeCC---C--eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 345 STVISMDFHPSHQTLLLVGSSN---G--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~d---g--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
..+.+++|||||++ ||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+
T Consensus 59 ~~~~~~~~SpDg~~-la~~~~~~~~~~~~l~~~~~~~g~~~~--------------------l~~~~~-~~~~~wspdg~ 116 (347)
T 2gop_A 59 ENATMPRISPDGKK-IAFMRANEEKKVSEIWVADLETLSSKK--------------------ILEAKN-IRSLEWNEDSR 116 (347)
T ss_dssp ESCEEEEECTTSSE-EEEEEEETTTTEEEEEEEETTTTEEEE--------------------EEEESE-EEEEEECTTSS
T ss_pred ccCCCeEECCCCCE-EEEEEeccCCCcceEEEEECCCCceEE--------------------EEcCCC-ccceeECCCCC
Confidence 57899999999995 5555433 3 47788888776442 222233 99999999999
Q ss_pred EEEEEECC---------------------------CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe
Q 001343 420 YVGVAFTK---------------------------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1096)
Q Consensus 420 ~l~s~~~d---------------------------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s 472 (1096)
.|+.++.+ ..|.+||+.+++.++. +.. . .+..+.|+||| ++++++
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~---l~~-~-~~~~~~~spdg---~~~~~~ 188 (347)
T 2gop_A 117 KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE---FEK-P-RFSSGIWHRDK---IVVNVP 188 (347)
T ss_dssp EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE---EEE-E-TTCEEEEETTE---EEEEEE
T ss_pred EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee---ecC-C-CcccccCCCCe---EEEEEe
Confidence 99988642 5799999988765332 333 3 78899999998 344444
Q ss_pred CCC-------cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC--------CeEEEEEcCCCCeeeEEeC
Q 001343 473 DDK-------LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDA 536 (1096)
Q Consensus 473 ~d~-------~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~ 536 (1096)
.++ ...+|. .++ ....+..+ ..+..+ +| +|+.|+.++.+ ..|.+|| +++.......
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~-~~~~l~~~-~~~~~~--sp--dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~ 260 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDG-KEEKMFEK-VSFYAV--DS--DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE 260 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETT-EEEEEEEE-ESEEEE--EE--CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT
T ss_pred cccccccccccccEEEeCCC-ceEEeccC-cceeeE--CC--CCCEEEEEEccccCCccccceEEEEC--CCceEecccc
Confidence 432 345554 344 34444444 445443 44 67778777654 3677777 3333333334
Q ss_pred CCCcEEE-EEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeE-EEEeC
Q 001343 537 PGHWCTT-MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI-KFWDM 614 (1096)
Q Consensus 537 ~~~~i~~-l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i-~iwd~ 614 (1096)
+...+.. +.|+ ++ .+++++. ++.+++| +.+++......+ .. .+..+.|+| ..+++++.++.. .+|.+
T Consensus 261 ~~~~~~~~~~~s-dg-~~~~~~~----~~~~~l~-~~~g~~~~~~~~-~~-~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 261 VDRGVGQAKIKD-GK-VYFTLFE----EGSVNLY-IWDGEIKPIAKG-RH-WIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp CCSEEEEEEEET-TE-EEEEEEE----TTEEEEE-EESSSEEEEECS-SS-EEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred CCcccCCccEEc-Cc-EEEEEec----CCcEEEE-EcCCceEEEecC-CC-eEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 4557776 8999 88 7777766 7788888 776666444433 33 788899998 677777766654 66666
Q ss_pred CCCe
Q 001343 615 DNVN 618 (1096)
Q Consensus 615 ~~~~ 618 (1096)
+ ++
T Consensus 330 ~-g~ 332 (347)
T 2gop_A 330 D-GE 332 (347)
T ss_dssp S-SS
T ss_pred C-Cc
Confidence 5 54
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.6e-08 Score=119.46 Aligned_cols=545 Identities=10% Similarity=0.029 Sum_probs=305.4
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeec-------ccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-------AHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~-------~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
...|.+|.-.++|. |-.|+.+| +..||-.. ++....-. -....|.++...++|. .|-.|+.++-+.
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~--~lWigt~~~Gl~ 90 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTR---FITYYKEEQSSSVQSITGNELNEVYTDPVQP--VIWIATQRAGLN 90 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSS---EEEECCCSSCSSSCCCSCSCEEEEEECSSSS--EEEEEESSSCEE
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCc---eEEEEcCCCCCccccccccccceEEEcCCCC--EEEEEeCCCCcc
Confidence 46799999998885 55677776 44555332 22111100 0134588998887775 366677775799
Q ss_pred EEE-cCCceEEEeeC--------CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-----CCCCcEEEE
Q 001343 479 VWE-LSGRKLFNFEG--------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHWCTTM 544 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l 544 (1096)
.|| .+++. ..+.. ....|.++......++ .|..++.++.|..||..+........ .....|.++
T Consensus 91 ~~d~~~~~f-~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i 168 (781)
T 3v9f_A 91 AYNYETQSF-SVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTA 168 (781)
T ss_dssp EEETTTTEE-EEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEE
T ss_pred eECCCCCeE-EeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEE
Confidence 999 54443 33311 1235777765321033 46667755567788876544322211 123468888
Q ss_pred EEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC------cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
...++|...+ ++. .+-|..||..+++....... .....+.++...+++... .|+.+ .+.+||..+++
T Consensus 169 ~~d~~g~lwi-gt~----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lw-igt~~-Gl~~~d~~~~~ 241 (781)
T 3v9f_A 169 TEAEDGKLYI-GHV----EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW-IGTSK-GLALFNANTET 241 (781)
T ss_dssp EEEETTEEEE-EET----TTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEE-EEETT-EEEEEETTTTE
T ss_pred EECCCCCEEE-Eec----CCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEE-EEeCC-cHheECCCCCc
Confidence 8877776555 332 44688999887765432111 112357778887777644 45555 69999987765
Q ss_pred EEEEeecC-----CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccc-cc-------ccCCCcccccCcceeEEe
Q 001343 619 ILTSTDAE-----GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL-RA-------VENPPFEALRTPIESVAL 685 (1096)
Q Consensus 619 ~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-------~~~~~~~~~~~~v~~~~~ 685 (1096)
........ -....|.++...++|.+. .|+..+-|.+++..++.-.. .. ............|.++..
T Consensus 242 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~ 320 (781)
T 3v9f_A 242 FTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ 320 (781)
T ss_dssp EEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE
T ss_pred EEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE
Confidence 54322111 112368888888877644 56665668888886652110 00 000111222344666666
Q ss_pred ecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcC-----CC
Q 001343 686 KVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP-----ES 760 (1096)
Q Consensus 686 s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~ 760 (1096)
..+|..-+++.. +-|..++.. ...+..+... ..
T Consensus 321 D~~g~lWigt~~--------------------------------------~Gl~~~~~~----~~~~~~~~~~~~~~~~~ 358 (781)
T 3v9f_A 321 DSFNNIWIGTWG--------------------------------------GGINFISNA----PPTFHTWSYSPTQMNES 358 (781)
T ss_dssp CSSCCEEEEEBS--------------------------------------SCEEEECSS----CCSCEEEC----CCCSS
T ss_pred eCCCCEEEEecC--------------------------------------CeEEEeCCC----CCcceeeccCccccccC
Confidence 666665544433 333333332 1222221110 00
Q ss_pred CCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeec
Q 001343 761 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1096)
Q Consensus 761 ~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s 840 (1096)
......|.++...++|. +-.++.++-+..|+...... ..+... ..+ ....|.+++..
T Consensus 359 ~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~~~~------~~~----~~~~v~~i~~d 415 (781)
T 3v9f_A 359 SLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA------------IYNKEN------REL----LSNSVLCSLKD 415 (781)
T ss_dssp CCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE------------ECC-----------C----CCSBEEEEEEC
T ss_pred CCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE------------EEccCC------CCC----CCcceEEEEEC
Confidence 11345789999888887 55566555677776422110 000000 001 34678999998
Q ss_pred CCCcEEEEecCCeEEEEEcccceEEEeec--CCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccc
Q 001343 841 KNDSYVMSATGGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKR 918 (1096)
Q Consensus 841 ~dg~~la~~~dg~v~iwd~~~~~~~~~~~--~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~ 918 (1096)
++|++.+...++.|..++..+++...... .....|.++...+ ++++. .|+.. -|..|+..+++ ..
T Consensus 416 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lw-igt~~-Gl~~~~~~~~~-~~--------- 482 (781)
T 3v9f_A 416 SEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIW-IGTHA-GVFVIDLASKK-VI--------- 482 (781)
T ss_dssp TTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEE-EEETT-EEEEEESSSSS-CC---------
T ss_pred CCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEE-EEECC-ceEEEeCCCCe-EE---------
Confidence 88887775446779999987765533221 2346788998887 67544 45554 58888877665 00
Q ss_pred cceeeecCC---CCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEec
Q 001343 919 KSVTIHIPA---GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 995 (1096)
Q Consensus 919 ~~~~~~~~~---~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~ 995 (1096)
...... ... ..|.++...++|...+.+.++.|..||..+++..............|.++...++|.+.+ ++.
T Consensus 483 ---~~~~~~~~~~~~-~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-~T~ 557 (781)
T 3v9f_A 483 ---HHYDTSNSQLLE-NFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWL-ATG 557 (781)
T ss_dssp ---EEECTTTSSCSC-SCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEE-EET
T ss_pred ---ecccCccccccc-ceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEE-EEC
Confidence 011111 001 268889999999877776656688899877654322111110145788998888888766 445
Q ss_pred CCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCC
Q 001343 996 DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1062 (1096)
Q Consensus 996 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~ 1062 (1096)
+|-|..||..++++... ....-++.. .|. ++...+ +|++.++ +.+| |..++..++
T Consensus 558 ~Glv~~~d~~~~~~~~~-~~~~gl~~~------~i~--~i~~d~-~g~lW~~-t~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 558 EGLVCFPSARNFDYQVF-QRKEGLPNT------HIR--AISEDK-NGNIWAS-TNTG-ISCYITSKK 612 (781)
T ss_dssp TEEEEESCTTTCCCEEE-CGGGTCSCC------CCC--EEEECS-SSCEEEE-CSSC-EEEEETTTT
T ss_pred CCceEEECCCCCcEEEc-cccCCCCCc------eEE--EEEECC-CCCEEEE-cCCc-eEEEECCCC
Confidence 66558899888775432 222222222 466 477776 6766554 4444 666665543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=9.5e-12 Score=134.91 Aligned_cols=295 Identities=10% Similarity=0.074 Sum_probs=194.5
Q ss_pred EEEcCCCCcEEEEEeC----CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 350 MDFHPSHQTLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 350 v~fsp~g~~llasg~~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
....|++++++++-.. ++.|.+.|..+++.+.. +.....+ . +++||||++|+++.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-------------------I~vG~~P-~-va~spDG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFLP-N-PVVADDGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSSC-E-EEECTTSSCEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-------------------EECCCCC-c-EEECCCCCEEEEEc
Confidence 4456888865555443 68999999999988754 1212223 4 99999999988775
Q ss_pred ----------CCCeEEEEEccCCCccccceeecc-----cccCEEEEEEecCCCcEEEEEEe--CCCcEEEEE-cCCceE
Q 001343 426 ----------TKHLIQLYSYAGSNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 426 ----------~dg~i~vwd~~~~~~~~~~~~l~~-----h~~~v~~l~~s~d~~~~~l~s~s--~d~~i~iwd-~~~~~~ 487 (1096)
.++.|.+||..+++.+..+. +.. .......++|+|||+ +++.+. .++.|.++| .+++.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk--~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCC--EEEEEEcCCCCeEEEEECCCCcEE
Confidence 35789999999988766432 111 112456799999999 455444 378999999 888888
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCeeeEEeC----CCCcE-EEEEE-cCCCCEEEEEeecc
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDA----PGHWC-TTMLY-SADGSRLFSCGTSK 560 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~----~~~~i-~~l~~-s~~~~~l~~~~~~~ 560 (1096)
.++.... . ..+.|.+ ...+++.+.||.+.+.++.. +........ ....+ ....| .++|+++++..
T Consensus 174 ~tI~v~g--~--~~~~P~g-~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--- 245 (386)
T 3sjl_D 174 RMLDVPD--C--YHIFPTA-PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--- 245 (386)
T ss_dssp EEEECCS--E--EEEEEEE-TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT---
T ss_pred EEEECCC--c--ceeecCC-CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC---
Confidence 8875322 1 1222332 35677888999999999876 333221111 11122 12355 46776655433
Q ss_pred CCCCeEEEEeCCCCe--eeEEEc---------CcCccceEEEEEeCCCCEEEEEEc----------CCeEEEEeCCCCeE
Q 001343 561 DGDSFLVEWNESEGT--IKRTYA---------GFRKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNI 619 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~--~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~ 619 (1096)
++.+++.|..++. ....+. +........++++++++.+++... .+.|.++|+.+++.
T Consensus 246 --~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 246 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 7899999997654 333332 100112233777999998888653 25799999999999
Q ss_pred EEEeecCCCCCCccEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecC
Q 001343 620 LTSTDAEGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 688 (1096)
+..+.... .+..+++++|++ +|++.. .++.|.++|..++ +.++.+..... .+.+.+++|
T Consensus 324 ~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~~~~~------p~~l~~s~d 384 (386)
T 3sjl_D 324 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQLGH------GPQVITTAD 384 (386)
T ss_dssp EEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEECCCCS------SCCEEEECC
T ss_pred EEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEecCCCC------CceeEECCc
Confidence 99887643 578999999996 666654 5899999999988 55555544322 334666655
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.8e-12 Score=133.95 Aligned_cols=239 Identities=8% Similarity=-0.095 Sum_probs=166.6
Q ss_pred CEEEEEEcCCCCEEE-EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCce
Q 001343 408 SVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK 486 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~ 486 (1096)
...+++++++|+.++ +...++.|.+||..++.... ....+...+.+++++++++ ++++.. ++.|.+||..+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 688999999999777 44678899999976643221 1123345688999999998 666666 8899999955555
Q ss_pred EEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 487 LFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 487 ~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
...+.. ....+.++++.+ ++.++++...++.|.+|+..+.............+..++++++|+.+++... ++.
T Consensus 99 ~~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~~ 172 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NNR 172 (270)
T ss_dssp CEECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GTE
T ss_pred EeeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CCE
Confidence 444432 235688898865 5677777777899999976544333222222336788999999986666543 678
Q ss_pred EEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE
Q 001343 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1096)
|.+||..+........... ..+..++++++|..+++...++.|.+|+........ ... .+...+.+++++++|++++
T Consensus 173 i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp EEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEE
T ss_pred EEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEE
Confidence 9999988766543322222 357789999999777776678899999987654433 221 1223688999999999888
Q ss_pred EEECCCcEEEEEcCCC
Q 001343 646 VTTADNGFKILANAIG 661 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~~~ 661 (1096)
+...++.|+++++...
T Consensus 250 ~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEGGGTEEEEECCCGG
T ss_pred EECCCCEEEEEcCCCc
Confidence 8888999999998654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-10 Score=125.73 Aligned_cols=274 Identities=7% Similarity=-0.046 Sum_probs=178.6
Q ss_pred EEcCCCCcEEEEEe-CCC---eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE-
Q 001343 351 DFHPSHQTLLLVGS-SNG---EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF- 425 (1096)
Q Consensus 351 ~fsp~g~~llasg~-~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~- 425 (1096)
...|++++++++-. ... .|.+||..+++.+.. +.....+ .+++||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34467764333322 222 899999999887643 1112223 899999999999885
Q ss_pred ---------CCCeEEEEEccCCCccccceeec--c---cccCEEEEEEecCCCcEEEEEEeC--CCcEEEEEcCCceEEE
Q 001343 426 ---------TKHLIQLYSYAGSNDLRQHSQID--A---HVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWELSGRKLFN 489 (1096)
Q Consensus 426 ---------~dg~i~vwd~~~~~~~~~~~~l~--~---h~~~v~~l~~s~d~~~~~l~s~s~--d~~i~iwd~~~~~~~~ 489 (1096)
.++.|.+||..+.+.+..+. +. . +......+.|+|||+ +|+.+.. ++.|.++|.+++.+..
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD~t~~~~~~ 162 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVVQGGSSDDQ 162 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEECCCCEEeE
Confidence 36789999998876655332 11 0 012356899999999 5665553 5789999933455545
Q ss_pred -eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-----CCCCc-EEEEEEcCCCCEEEEEeeccCC
Q 001343 490 -FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHW-CTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 490 -~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
+.. .. ++.+.+.+. ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 163 ~i~~-~~---~~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 232 (373)
T 2mad_H 163 LLSS-PT---CYHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---- 232 (373)
T ss_pred EcCC-Cc---eEEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence 432 11 233444433 45677888999999999 665552221 11112 233456666665554443
Q ss_pred CCeEEEEeCCCCe--eeEEEcCc---------CccceEEEEEeCCCCEEEEEEc----------CCeEEEEeCCCCeEEE
Q 001343 563 DSFLVEWNESEGT--IKRTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILT 621 (1096)
Q Consensus 563 ~~~i~iwd~~~~~--~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 621 (1096)
.+.+.+.|+.++. .+..+... .......+.++++++.++++.. .+.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 6789999987552 22333211 0112334788999998888653 3579999999999999
Q ss_pred EeecCCCCCCccEEEEeCCCC-EEEEEE-CCCcEEEEEcCCC
Q 001343 622 STDAEGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIG 661 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~ 661 (1096)
.+.... ....++|+|||+ +++++. .++.|.+||..++
T Consensus 313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 886543 578999999999 777776 5899999999888
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.5e-12 Score=152.82 Aligned_cols=245 Identities=10% Similarity=0.032 Sum_probs=162.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECC-----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc--
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~-- 476 (1096)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 445578999999999999987654 3699999999876442 112222367899999 8 6666666554
Q ss_pred ------------EEEEE-cCCce--EEEee--CCCCCeEEEEeeecCCCcEEEEEECCC-----eEEEEEcCCC--Ceee
Q 001343 477 ------------IKVWE-LSGRK--LFNFE--GHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTM--GSRV 532 (1096)
Q Consensus 477 ------------i~iwd-~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~ 532 (1096)
|++|+ .++.. ...+. .+...+.++.|+| ||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88999 44442 22233 3334577888865 778888777554 8999999876 3134
Q ss_pred EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC--eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEE
Q 001343 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (1096)
Q Consensus 533 ~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 610 (1096)
.+..+...+.... +|+|+.|+..+........|++||+.++ +....+..+.. .+..+.+. ++..+++...|+..+
T Consensus 311 ~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEE-BTEEEEEEEETTEEE
T ss_pred EecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEE-CCEEEEEEEECCEEE
Confidence 4444444444443 4899999887754333677999999875 34444444333 56667776 556677788888877
Q ss_pred EEeCC-CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE----CCCcEEEEEcCCC
Q 001343 611 FWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT----ADNGFKILANAIG 661 (1096)
Q Consensus 611 iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~ 661 (1096)
+|.++ ++.....+.... ...+..+.++|++..++... ..++|.+||+.++
T Consensus 388 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 77554 455556565432 23678889999887665332 2478999999877
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=8.3e-11 Score=127.54 Aligned_cols=293 Identities=8% Similarity=-0.046 Sum_probs=186.9
Q ss_pred ecCCCcEEEEEEC-----CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec------cCCCCeEEEEeCC
Q 001343 504 HKENIQFIFSTAI-----DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNES 572 (1096)
Q Consensus 504 ~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~------~~~~~~i~iwd~~ 572 (1096)
|.++++.+++... ++.|.+.|..+.+.+..+.....+ . ++++|||++++++... ...++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4557778887765 689999999998888777655555 4 9999999998877520 0015689999999
Q ss_pred CCeeeEEEcCcC------ccceEEEEEeCCCCEEEEEEc--CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEE
Q 001343 573 EGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1096)
Q Consensus 573 ~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1096)
+++.+.++.... ......+.++|+|++++++.. ++.|.++|+.+++.+..+...+ . ...+....+.+
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~-~~~~P~g~~~~ 192 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----C-YHIFPTAPDTF 192 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E-EEEEEEETTEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----c-ceeecCCCcee
Confidence 999998875321 112344899999999998874 6899999999999999987542 1 22333345677
Q ss_pred EEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCC
Q 001343 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS 724 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 724 (1096)
++.+.||.+.+.++.+..+...... . .|.++
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~-~------------~~~~~------------------------------------ 223 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHT-E------------VFHPE------------------------------------ 223 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEEC-C------------CCSCT------------------------------------
T ss_pred EEECCCCCEEEEECCCCCeEEEeec-c------------eeccc------------------------------------
Confidence 7888899998888865212110000 0 00000
Q ss_pred CCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEe-cCCceEEEeecCCeEEEeeccCCccCCCCc
Q 001343 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (1096)
Q Consensus 725 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~ 803 (1096)
...++ ....|. ++|+.++ .+.+|.+.+.|+.......
T Consensus 224 ------------~~~~~--------------------------~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v--- 261 (386)
T 3sjl_D 224 ------------DEFLI--------------------------NHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF--- 261 (386)
T ss_dssp ------------TSCBC--------------------------SCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE---
T ss_pred ------------ccccc--------------------------ccceeEcCCCcEEE-EeCCCEEEEEECCCCccee---
Confidence 00000 001333 4564333 4446777777764322100
Q ss_pred eeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC-----------CeEEEEEcccceEEEeecCCC
Q 001343 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-----------GKISLFNMMTFKVMTTFMSPP 872 (1096)
Q Consensus 804 ~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d-----------g~v~iwd~~~~~~~~~~~~h~ 872 (1096)
+.-|++.+...+. .| -.......++++++++.++.... +.|.+.|+.+++.++++...
T Consensus 262 ------~~~~~~~~~~~~~---~g-~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg- 330 (386)
T 3sjl_D 262 ------LPAVEALTEAERA---DG-WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG- 330 (386)
T ss_dssp ------CCCEESSCHHHHH---TT-EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-
T ss_pred ------ecceecccccccc---cc-ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-
Confidence 0111110000000 00 01234456888999988777641 46999999999999987532
Q ss_pred CCeeEEEEecCCCc-EEEEe-eCCCeEEEEeeccce
Q 001343 873 PASTFLAFHPQDNN-IIAIG-TEDSTIHIYNVRVDE 906 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~-~l~s~-~~dg~i~iw~~~~~~ 906 (1096)
..+.+|+|++ |++ +|+++ ..++.|.++|..+++
T Consensus 331 ~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 331 HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCc
Confidence 3678999999 776 66654 558999999999987
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-11 Score=128.94 Aligned_cols=216 Identities=11% Similarity=0.011 Sum_probs=166.8
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccc-cCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 494 (1096)
..+++|++++.++.|.+||.++|+.+. .+..+. ..+.++.++|+|+ +++ +.++.|..||.+|+.+..+..+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w---~~~~~~~~~~~~~~~~pdG~--ilv--s~~~~V~~~d~~G~~~W~~~~~~ 75 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVW---EYPLEKGWECNSVAATKAGE--ILF--SYSKGAKMITRDGRELWNIAAPA 75 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEE---EEECCTTCCCCEEEECTTSC--EEE--ECBSEEEEECTTSCEEEEEECCT
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEE---EeCCCccCCCcCeEECCCCC--EEE--eCCCCEEEECCCCCEEEEEcCCC
Confidence 346789999999999999998998776 344454 4789999999998 677 45788999998899999988753
Q ss_pred -CCeEEEEeeecCCCcEEEEEEC-CCeEEEEEcCCCCeeeEEeCCC------CcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 495 -APVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPG------HWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 495 -~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~------~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
..+.++.+.+ +|+++++.+. ++.|..+|. .++.+..+.... .....+++.++|+++++... ++.|
T Consensus 76 ~~~~~~~~~~~--dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~----~~~v 148 (276)
T 3no2_A 76 GCEMQTARILP--DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA----TSEV 148 (276)
T ss_dssp TCEEEEEEECT--TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT----TTEE
T ss_pred CccccccEECC--CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC----CCEE
Confidence 4677777654 7789988887 788877775 455555443211 13445678899999998765 8899
Q ss_pred EEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC----CCCCccEEEEeCCCC
Q 001343 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG----GLPNLPRLRFSKEGN 642 (1096)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~ 642 (1096)
..||.. |+.+.++.... ....+...++++.+++++.++.|..+|..+|+.+..+.... ....+..+...++|+
T Consensus 149 ~~~d~~-G~~~w~~~~~~--~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 149 REIAPN-GQLLNSVKLSG--TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp EEECTT-SCEEEEEECSS--CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred EEECCC-CCEEEEEECCC--CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence 999998 99999988753 34456778999999998888899999999999998886432 112367788889999
Q ss_pred EEEEEE
Q 001343 643 LLAVTT 648 (1096)
Q Consensus 643 ~l~~~~ 648 (1096)
++++..
T Consensus 226 i~v~~~ 231 (276)
T 3no2_A 226 LYICNW 231 (276)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 888875
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-11 Score=131.63 Aligned_cols=245 Identities=9% Similarity=0.014 Sum_probs=169.9
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
.....+++.. ++ ++++...++.|.+||..+++.+.+ +. .......++++++++..++.
T Consensus 44 ~~~~~i~~~~-~~-lyv~~~~~~~v~viD~~t~~~~~~-------------------i~-~~~~p~~i~~~~~g~lyv~~ 101 (328)
T 3dsm_A 44 DVAQSMVIRD-GI-GWIVVNNSHVIFAIDINTFKEVGR-------------------IT-GFTSPRYIHFLSDEKAYVTQ 101 (328)
T ss_dssp SCEEEEEEET-TE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EE-CCSSEEEEEEEETTEEEEEE
T ss_pred ccceEEEEEC-CE-EEEEEcCCCEEEEEECcccEEEEE-------------------cC-CCCCCcEEEEeCCCeEEEEE
Confidence 4567788753 33 677777789999999999988653 21 34578899999998544444
Q ss_pred ECCCeEEEEEccCCCccccceeecc---cccCEEEEEEecCCCcEEEEEEe-CCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~---h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
..++.|.+||..+++....+. ... +......+++ .++. ++++.. .++.|.++| .+++.+..+.... ....
T Consensus 102 ~~~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~-~~~~--lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~ 176 (328)
T 3dsm_A 102 IWDYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQ-YGKY--VYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTS 176 (328)
T ss_dssp BSCSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEE-ETTE--EEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCC
T ss_pred CCCCeEEEEECCCCeEEEEEE-cCCccccCCCcceEEE-ECCE--EEEEcCCCCCEEEEEECCCCeEEEEEEcCC-Cccc
Confidence 478999999999887654321 111 1114556777 3443 445444 489999999 8888887776433 3456
Q ss_pred EEeeecCCCcEEEEEECC----------CeEEEEEcCCCCeeeEEeCC-CCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 500 ICPHHKENIQFIFSTAID----------GKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
+.+.+ +|++++++..+ +.|.++|..+.+....+... ......++++|+++.++++. ..|.+
T Consensus 177 i~~~~--dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~------~~v~~ 248 (328)
T 3dsm_A 177 LVMDK--YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN------NDIWR 248 (328)
T ss_dssp CEECT--TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES------SSEEE
T ss_pred eEEcC--CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc------cEEEE
Confidence 77754 66766666544 78999999887766555543 34689999999999998863 38999
Q ss_pred EeCCCCeeeEE-EcCcCccceEEEEEeCCC-CEEEEE----EcCCeEEEEeCCCCeEEEEeec
Q 001343 569 WNESEGTIKRT-YAGFRKKSNGVVQFDTTQ-NHFLAV----GEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~l~~~----~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
||..+++.... +..........++++|++ ..+++. ..++.|.+||.. ++.+..+..
T Consensus 249 ~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 249 MPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp EETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred EECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 99988876421 111112357779999954 445554 468899999998 888877764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-11 Score=148.34 Aligned_cols=244 Identities=8% Similarity=-0.040 Sum_probs=156.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeC-CC----eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSS-NG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~-dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
|...+..++|||||++ ||.++. +| .|++||+.+|+.+.. ..+...+..++|+||
T Consensus 161 ~~~~~~~~~~SPDG~~-la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRL-LAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN 219 (741)
T ss_dssp --EEEEEEEECTTSSE-EEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT
T ss_pred CCEEEEeEEECCCCCE-EEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC
Confidence 3347899999999995 555443 33 699999999887531 001112357899999
Q ss_pred CCEEEEEECCCe--------------EEEEEccCCCccc-cceeecccccCEEEEEEecCCCcEEEEEEeCC-----CcE
Q 001343 418 GNYVGVAFTKHL--------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLI 477 (1096)
Q Consensus 418 ~~~l~s~~~dg~--------------i~vwd~~~~~~~~-~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~i 477 (1096)
+.|+.++.++. |++|++.++.... .+.....+...+..+.|+|||+ +|+..+.+ ..|
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTV 296 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceE
Confidence 99998877654 8899998765321 1112223444689999999999 56555543 489
Q ss_pred EEEE-cCC--ceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC----CCeEEEEEcCCCC-e-eeEEeCCCCcEEEEEEcC
Q 001343 478 KVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG-S-RVDYDAPGHWCTTMLYSA 548 (1096)
Q Consensus 478 ~iwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~-~~~~~~~~~~i~~l~~s~ 548 (1096)
++|| .++ ++...+..+...+....+ + +|..|+..+. ++.|.+||+.+.. . ...+..+...+..+.++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~- 372 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFVD-G--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA- 372 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEEE-E--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-
T ss_pred EEEECCCCCCcccEEecCCCCceEEEEe-c--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-
Confidence 9999 555 315566666555555433 4 4566766665 4569999988752 3 33333444456677777
Q ss_pred CCCEEEEEeeccCCCCeEE--EEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE----cCCeEEEEeCCCCeE
Q 001343 549 DGSRLFSCGTSKDGDSFLV--EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~--iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1096)
++..+++... ++..+ +++. ++...+.+..+....+..+.++|+++.++... ..++|+.||+.+++.
T Consensus 373 ~~~lv~~~~~----dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 GNRLFASYIH----DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp BTEEEEEEEE----TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCEEEEEEEE----CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4455555554 55544 4554 45556666654333677888999887665432 347899999988873
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-10 Score=125.80 Aligned_cols=248 Identities=11% Similarity=0.049 Sum_probs=165.5
Q ss_pred CCCceEEEEEcCCCCcEEEE-------EeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 343 QGSTVISMDFHPSHQTLLLV-------GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llas-------g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
.-....+++|+++|+ ++++ +..++.|.+||..+++.... . . ....++...+.+++++
T Consensus 16 ~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~---~---------~~~~~~~~~~~~i~~~ 79 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C---K---------PEVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E---C---------CEETTEECCEEEEEEC
T ss_pred cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E---e---------cccCCCCCCCceEEEe
Confidence 345678999999998 6777 56789999999888775321 0 0 0012244679999999
Q ss_pred CC-CCEEEEEECCCeEEEEEccCCCcccc-ceeec-ccccCEEEEEEecCCCcEEEEEEeCC---------------CcE
Q 001343 416 PD-GNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQID-AHVGAVNDLAFAYPNKLLCVVTCGDD---------------KLI 477 (1096)
Q Consensus 416 pd-~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s~d---------------~~i 477 (1096)
++ |+++++ +..+.|.+||.+ ++.... ..... .....+.++++.++|+ +.++...+ +.|
T Consensus 80 ~~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 80 RDANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred cCCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeE
Confidence 99 665544 444579999988 553321 11011 1224588999999998 66666554 567
Q ss_pred EEEEcCCceEEEeeCCCCCeEEEEee--ecCCCcEEEEE-ECCCeEEEEEcC-CCCe-----eeEEeCCC-CcEEEEEEc
Q 001343 478 KVWELSGRKLFNFEGHEAPVYSICPH--HKENIQFIFST-AIDGKIKAWLYD-TMGS-----RVDYDAPG-HWCTTMLYS 547 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~-~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~l~~s 547 (1096)
..||..++.... ..+......++++ .+++++.++.+ ..++.|.+|+.+ .+.. ...+..+. ..+..++++
T Consensus 156 ~~~~~~g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 156 YCFTTDGQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EEECTTSCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EEECCCCCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 777744554433 2333456788886 01366555544 567999999986 3321 11222222 567889999
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCC
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN 616 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 616 (1096)
++|+..++... ++.|..||..+++.+..+..+.. .+.+++++++++.|++++ .++.|..|++..
T Consensus 235 ~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99988777654 77999999987887777766544 678899999999665554 568899999864
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-09 Score=115.86 Aligned_cols=271 Identities=10% Similarity=-0.013 Sum_probs=182.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 484 (1096)
....+.+++++++|+..++...++.|.+||.. ++... . .+..+...+.++++.+++. +.++...++.|..||..+
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d~~g 92 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-F-EVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLSKKG 92 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-E-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTS
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-E-ECCCCCCcceeEEECCCCC--EEEEecCCCeEEEECCCC
Confidence 45678999999999988877778999999987 44322 1 2334456799999999998 677766688999999446
Q ss_pred ceEE-EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 485 RKLF-NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 485 ~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
+... .+......+.++++.+ ++.++++...++.|..||.. ++... ........+..+++.++|+..++...
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~---- 165 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ---- 165 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT----
T ss_pred CeEEecCCCCCCCCccceECC--CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC----
Confidence 5532 2222345688888865 56677776668899999877 43332 22223457899999999996655442
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1096)
.+.|..+|. +++............+..++++++++..++....+.|.+|+. +++.... ........+.+++++++|+
T Consensus 166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSE 242 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTC
T ss_pred CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCC
Confidence 678999998 555544222122235778999999877766666778999998 5544432 2222233678999999999
Q ss_pred EEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecC
Q 001343 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
++++...++.|..|+. ++... .+.... ....+.+++++++|...++..
T Consensus 243 l~v~~~~~~~i~~~~~-~g~~~--~~~~~~---~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 243 IWFTEWGANQIGRITN-DNTIQ--EYQLQT---ENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp EEEEETTTTEEEEECT-TSCEE--EEECCS---TTCCCCCEEECTTSCEEEECS
T ss_pred EEEeccCCCeEEEECC-CCcEE--EEECCc---cCCccceeEeCCCCCEEEEcc
Confidence 7777666789999998 34211 111110 112356788888887665543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-10 Score=127.71 Aligned_cols=278 Identities=9% Similarity=0.077 Sum_probs=187.6
Q ss_pred CCCCcEEEEEeCC----CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE----
Q 001343 354 PSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF---- 425 (1096)
Q Consensus 354 p~g~~llasg~~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~---- 425 (1096)
|++++++++...+ +.|.++|..+++.+.+. .--..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I-------------------~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMT-------------------DGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-------------------EECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEE-------------------ECCCCC--ceEECCCCCEEEEEecccc
Confidence 4566555554444 79999999999887641 112234 799999999988875
Q ss_pred ------CCCeEEEEEccCCCccccceeecc-----cccCEEEEEEecCCCcEEEEEEeC--CCcEEEEE-cCCceEEEee
Q 001343 426 ------TKHLIQLYSYAGSNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFE 491 (1096)
Q Consensus 426 ------~dg~i~vwd~~~~~~~~~~~~l~~-----h~~~v~~l~~s~d~~~~~l~s~s~--d~~i~iwd-~~~~~~~~~~ 491 (1096)
.++.|.++|..+++.+..+. +.+ .......+.|+|||+ +++.+.. ++.|.+.| .+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999988766432 210 112356789999999 5555543 68999999 8888888776
Q ss_pred CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE----EeCCCCc-EEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
--. . ....|.+. ..+++.+.||.+.+.+..+++.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g--~--~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPD--C--YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCS--E--EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCC--c--eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 322 1 22334333 5667778899888888854443321 1111111 123567899888877664 6789
Q ss_pred EEEeCCCCeee--EEEcCc---------CccceEEEEEeCCCCEEEEEEc----------CCeEEEEeCCCCeEEEEeec
Q 001343 567 VEWNESEGTIK--RTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 567 ~iwd~~~~~~~--~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 625 (1096)
.+.|....... ..+... .......++++++++.+++... ++.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111100 0001112689999988877642 35799999999999998875
Q ss_pred CCCCCCccEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCccccccc
Q 001343 626 EGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLRSLRAV 668 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~ 668 (1096)
.. ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 43 478999999998 888888 5899999999988 444443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-09 Score=115.77 Aligned_cols=265 Identities=9% Similarity=-0.032 Sum_probs=170.5
Q ss_pred CcceEEeecCCCceEEEEEcCCCCcEEEEEe---------CCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGS---------SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 334 ~~~~~~~l~h~~~V~~v~fsp~g~~llasg~---------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
.++++.++.-...- .++|||||++++++.. .++.|.+||..+.+.+....+. . .....
T Consensus 56 t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~-----~-----~~~~~-- 122 (373)
T 2mad_H 56 SGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP-----D-----APRFD-- 122 (373)
T ss_pred CCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC-----C-----ccccc--
Confidence 45566666633333 9999999996444432 3678999999988776431100 0 00000
Q ss_pred CCCCEEEEEEcCCCCEEEEEEC--CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc
Q 001343 405 VPISVSRVAWSPDGNYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 482 (1096)
+......++|+|||++|+++.. ++.|.++| .+++..... +. ..+ ++.+.|+++. .+++.+.||.+.++|.
T Consensus 123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~--i~-~~~---~~~~~~~~~~-~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL--LS-SPT---CYHIHPGAPS-TFYLLCAQGGLAKTDH 194 (373)
T ss_pred cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE--cC-CCc---eEEEEeCCCc-eEEEEcCCCCEEEEEC
Confidence 1123458999999999998874 47899999 988765530 21 111 2556677765 5677788999999997
Q ss_pred CCceEEEee-----CCCCCe-EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee--EEeC----------CCCcEEEE
Q 001343 483 SGRKLFNFE-----GHEAPV-YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDA----------PGHWCTTM 544 (1096)
Q Consensus 483 ~~~~~~~~~-----~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~----------~~~~i~~l 544 (1096)
+++...... ....++ ....+.+. +..++..+..+.+.+.|+....... .+.. .......+
T Consensus 195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~ 272 (373)
T 2mad_H 195 AGGAAGAGLVGAMLTAAQNLLTQPAQANK--SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred CCcEEEEEeccccccCCcceeecceeEec--CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence 555442221 112222 12233333 2333334477899999986543221 1111 11224457
Q ss_pred EEcCCCCEEEEEeecc------CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC-EEEEEE-cCCeEEEEeCCC
Q 001343 545 LYSADGSRLFSCGTSK------DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVG-EDSQIKFWDMDN 616 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~ 616 (1096)
.++++++.+++..... +..+.|.++|..+++.+.++.... ....+.|+|+|+ .++++. .++.|.+||..+
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 8999999888765311 124689999999999999986533 467799999999 777776 589999999999
Q ss_pred CeEEEEe
Q 001343 617 VNILTST 623 (1096)
Q Consensus 617 ~~~~~~~ 623 (1096)
++.+..+
T Consensus 351 ~~vv~~i 357 (373)
T 2mad_H 351 GDQDQST 357 (373)
T ss_pred CCEEeee
Confidence 9998874
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-10 Score=121.95 Aligned_cols=245 Identities=12% Similarity=0.036 Sum_probs=163.8
Q ss_pred CCCCEEEEEEcCCCCEEEE-------EECCCeEEEEEccCCCccccce-eecccccCEEEEEEecC-CCcEEEEEEeCCC
Q 001343 405 VPISVSRVAWSPDGNYVGV-------AFTKHLIQLYSYAGSNDLRQHS-QIDAHVGAVNDLAFAYP-NKLLCVVTCGDDK 475 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~-~l~~h~~~v~~l~~s~d-~~~~~l~s~s~d~ 475 (1096)
.-....+++|+++|+.+++ +..++.|.+||..+++...... ...++...+.+++++++ ++ ++++ +..+
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~-~~~~ 92 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVA-DMRL 92 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEE-ETTT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEE-ECCC
Confidence 3345789999999988887 5778899999988776432100 01135577999999999 65 4444 4455
Q ss_pred cEEEEEcCCceEEE-eeC----CCCCeEEEEeeecCCCcEEEEEECC---------------CeEEEEEcCCCCeeeEEe
Q 001343 476 LIKVWELSGRKLFN-FEG----HEAPVYSICPHHKENIQFIFSTAID---------------GKIKAWLYDTMGSRVDYD 535 (1096)
Q Consensus 476 ~i~iwd~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~ 535 (1096)
.|.+||..++.... ... ....+.++++.+ +|.++++...+ +.|..|+.. ++. ..+.
T Consensus 93 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~ 168 (314)
T 1pjx_A 93 GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVD 168 (314)
T ss_dssp EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEE
T ss_pred CEEEEeCCCCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-EEec
Confidence 79999944665432 221 123477888865 66677666554 566666654 332 2222
Q ss_pred CCCCcEEEEEEc----CCCCEEEEEeeccCCCCeEEEEeCC-CCee-----eEEEcCcCccceEEEEEeCCCCEEEEEEc
Q 001343 536 APGHWCTTMLYS----ADGSRLFSCGTSKDGDSFLVEWNES-EGTI-----KRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 536 ~~~~~i~~l~~s----~~~~~l~~~~~~~~~~~~i~iwd~~-~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
........++++ ++++.++++.. .++.|.+||.. +++. ...+..+.......++++++|+.+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 233356889999 99977666542 26789999976 4442 22233322025677999999988888878
Q ss_pred CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEE-ECCCcEEEEEcCCC
Q 001343 606 DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIG 661 (1096)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~ 661 (1096)
++.|.+||..+++.+..+..+.. .+.+++|+++++.|+++ ..++.|..|++...
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~--~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCEEEEEcCCCCcEeEEEeCCCC--CceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 89999999987777666665433 78999999999955544 45678999987643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-09 Score=122.71 Aligned_cols=237 Identities=11% Similarity=0.028 Sum_probs=160.9
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
.....++|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4689999999998 788877789999999987765421 111 22233 9999999999988
Q ss_pred ECCC--eEEEEEccCCCccccceeecc-cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe-----eCCCC
Q 001343 425 FTKH--LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-----EGHEA 495 (1096)
Q Consensus 425 ~~dg--~i~vwd~~~~~~~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-----~~~~~ 495 (1096)
..++ .|.+|+..++........+.. ....+.+++++|++. .|+.+..++.|+.|| ..+. ...+ .++..
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQE-VTLIKQLELSGSLG 265 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCC-EEEEEECCCCSCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCC-EEEEecccccCCCC
Confidence 8765 788898877654332111112 456788999999555 344477788999999 4444 3333 22222
Q ss_pred Ce--EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC---------------CcEEEEEEcCCCCEEEEEe-
Q 001343 496 PV--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------------HWCTTMLYSADGSRLFSCG- 557 (1096)
Q Consensus 496 ~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~i~~l~~s~~~~~l~~~~- 557 (1096)
.- ..++|+|. ++.++++...++.|+.|+.+.. ...+.... .....++++++|+++++-.
T Consensus 266 ~~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~ 342 (409)
T 3hrp_A 266 TNPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF 342 (409)
T ss_dssp CSSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred CCccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence 22 38899774 3466667677899999987643 22222221 3478999999999666543
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcC--------------ccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFR--------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
. ++.|+.|+..++... ++.++. -.....+++++++..+++-..++.|+.+++
T Consensus 343 ~----~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 343 K----GYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp T----TCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred C----CCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 3 789999998777643 333320 124677999999777777777788887765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-09 Score=120.85 Aligned_cols=291 Identities=9% Similarity=-0.030 Sum_probs=184.7
Q ss_pred cCCCcEEEEEECC-----CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec------cCCCCeEEEEeCCC
Q 001343 505 KENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESE 573 (1096)
Q Consensus 505 ~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~------~~~~~~i~iwd~~~ 573 (1096)
..++..+++.... +.|.++|..+.+.+..+.....+ .++++|||++++++... ...++.|.++|..+
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 3455666665543 79999999999888877766555 89999999999887521 01256899999999
Q ss_pred CeeeEEEcCc--C----ccceEEEEEeCCCCEEEEEEc--CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC-CEE
Q 001343 574 GTIKRTYAGF--R----KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NLL 644 (1096)
Q Consensus 574 ~~~~~~~~~~--~----~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 644 (1096)
++.+..+... . ......+.++|+|++++++.. ++.|.+.|+.+++.+..+.... +....|++ ..+
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------~~~~~p~g~~~~ 232 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------CYHIFPASPTVF 232 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEETTEE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------ceeeccCCCcEE
Confidence 9999887532 0 112334789999999999874 5789999999999998887532 13344433 566
Q ss_pred EEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCC
Q 001343 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS 724 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 724 (1096)
++.+.||.+.+.+..++ +......
T Consensus 233 v~~~~dG~~~~V~~~~~-~v~~~~~------------------------------------------------------- 256 (426)
T 3c75_H 233 YMNCRDGSLARVDFADG-ETKVTNT------------------------------------------------------- 256 (426)
T ss_dssp EEEETTSSEEEEECCTT-CCEEEEC-------------------------------------------------------
T ss_pred EEEcCCCCEEEEECCCC-cEEEEee-------------------------------------------------------
Confidence 67777888887777433 1111000
Q ss_pred CCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCce
Q 001343 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA 804 (1096)
Q Consensus 725 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~ 804 (1096)
.+++.. .......+.|++++..++.....+.+.+.|+......
T Consensus 257 --------------~~~~v~------------------~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~----- 299 (426)
T 3c75_H 257 --------------EVFHTE------------------DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT----- 299 (426)
T ss_dssp --------------CCCSCT------------------TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE-----
T ss_pred --------------eeeccC------------------CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE-----
Confidence 001110 0000001234555555555555666666665321100
Q ss_pred eeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-----------CCeEEEEEcccceEEEeecCCCC
Q 001343 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-----------GGKISLFNMMTFKVMTTFMSPPP 873 (1096)
Q Consensus 805 ~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-----------dg~v~iwd~~~~~~~~~~~~h~~ 873 (1096)
-+.-|.......+.... .......++++||++.++++. .+.|.+.|..+++.++++....
T Consensus 300 ----v~~~~~~~~~~~i~~g~----~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~- 370 (426)
T 3c75_H 300 ----FRAPIEALTEAERADDW----RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH- 370 (426)
T ss_dssp ----ECCCEESSCTTTGGGTE----EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-
T ss_pred ----Eeeeeeecccccccccc----ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-
Confidence 00111111111000000 112233478999987766653 2469999999999999885322
Q ss_pred CeeEEEEecCCCc-EEEEee-CCCeEEEEeeccce
Q 001343 874 ASTFLAFHPQDNN-IIAIGT-EDSTIHIYNVRVDE 906 (1096)
Q Consensus 874 ~i~~l~~s~~d~~-~l~s~~-~dg~i~iw~~~~~~ 906 (1096)
...+++|+| |++ ++++.. .++.|.++|+.+++
T Consensus 371 ~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 371 EIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EECEEEECC-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCC
Confidence 578999999 888 888777 59999999999987
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-09 Score=132.68 Aligned_cols=250 Identities=12% Similarity=0.058 Sum_probs=162.7
Q ss_pred CCCceEEEEEcCCCCcEEEEEeC----CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCC
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 418 (1096)
|...+..++|||||++++.+.+. ...|+|||+.+|+.+.. . +.+ .....++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~~~--~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------LKD--VKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------EEE--EESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------cCC--ceeccEEEe-CC
Confidence 45578999999999954443333 35799999999986532 0 111 112467899 99
Q ss_pred CEEEEEECCC-------------eEEEEEccCCCccc-cceeecc-cccCEEEEEEecCCCcEEEEEEeC---CCcEEEE
Q 001343 419 NYVGVAFTKH-------------LIQLYSYAGSNDLR-QHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGD---DKLIKVW 480 (1096)
Q Consensus 419 ~~l~s~~~dg-------------~i~vwd~~~~~~~~-~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~s~---d~~i~iw 480 (1096)
+.|+.++.+. .|++|++.++.... .+..... |...+..+.|+|||+. ++++.+. +..|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF-LLISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE-EEEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE-EEEEEccCCCCcEEEEE
Confidence 9999988774 39999998765321 1112233 5556889999999995 3333332 3589999
Q ss_pred E-cCCc-eEEEeeCCCCCeEEEEeeecCCCcEEEEEECC---CeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCCCCEE
Q 001343 481 E-LSGR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 481 d-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
| .++. ....+..+....... +.+. ++.+++....+ +.|..+++.+... ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 9 4443 456666666666554 4343 23445555443 6799999987654 234555555554 889999998
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC----CeEEEEeCCCCeEE
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWDMDNVNIL 620 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 620 (1096)
+..... ++...|++|++..+. .+.+.......+..+.+++++..++....+ +.++.||+.+++..
T Consensus 341 v~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYMV-DATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEE-TTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEE-CCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 877642 223479999988554 445543333356667777888777665544 78999999887643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-09 Score=112.17 Aligned_cols=229 Identities=11% Similarity=0.097 Sum_probs=155.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
+..-..+..|+|++..++++...++.|..||..+++... ......+.+++++++|++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v 69 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVA 69 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEE
Confidence 334567899999766688888888999999998876431 11345799999999999555
Q ss_pred EEECCCeEEEEEccCCCccccceeec--ccccCEEEEEEecCCCcEEEEEEeCC---------CcEEEEE--cCCceEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDD---------KLIKVWE--LSGRKLFN 489 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~--~h~~~v~~l~~s~d~~~~~l~s~s~d---------~~i~iwd--~~~~~~~~ 489 (1096)
+ . ++.|.+||.++++... +.... .....+++++++|+|+ ++++...+ ..-.+|. ..++...
T Consensus 70 ~-~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~- 143 (297)
T 3g4e_A 70 T-I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK- 143 (297)
T ss_dssp E-E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-
T ss_pred E-E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-
Confidence 4 4 5689999998765322 11111 1234588999999998 55544221 2334554 4454433
Q ss_pred eeCCCCCeEEEEeeecCCCcEE-EEEECCCeEEEEEcC--CCCee--e---EEeCCCCcEEEEEEcCCCCEEEEEeeccC
Q 001343 490 FEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYD--TMGSR--V---DYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~--~---~~~~~~~~i~~l~~s~~~~~l~~~~~~~~ 561 (1096)
+..+....+.++|++ +++.+ ++.+.++.|.+|+++ ++... . .+.........++++++|++.++...
T Consensus 144 ~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~--- 218 (297)
T 3g4e_A 144 YFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN--- 218 (297)
T ss_dssp EEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET---
T ss_pred EeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC---
Confidence 333344567889876 55555 555668899999984 33221 1 12222356789999999987776653
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEe-CCCCEEEEEEc
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGE 605 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~ 605 (1096)
.+.|..||..+++.+..+..+.. .+.+++|. |+++.|++++.
T Consensus 219 -~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 -GGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp -TTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred -CCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 67899999999999998887654 68889998 88887776654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-10 Score=123.94 Aligned_cols=270 Identities=12% Similarity=0.013 Sum_probs=172.6
Q ss_pred CceEEEEEcCCCCcEEEEEe--CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 345 STVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
..+..++++|+|+ ++++.. .++.++||.+.+++... +.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~~---~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLIP---FPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEEE---SCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCeec---CCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 677753 23446777766554321 11010 01234667899999999988666
Q ss_pred EEEC-----CCeEEEEEccCCCccccceeec----ccccCEEEEEEecCCCcEEEEEEe---CCCcEEEEE-cCCceEEE
Q 001343 423 VAFT-----KHLIQLYSYAGSNDLRQHSQID----AHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 423 s~~~-----dg~i~vwd~~~~~~~~~~~~l~----~h~~~v~~l~~s~d~~~~~l~s~s---~d~~i~iwd-~~~~~~~~ 489 (1096)
+-.. ++.|.+||..+++.++.+ .+. .+...+..+++++++.. .+++.. .++.|.+|| .+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 5443 578999999988755432 121 23345789999987553 456655 688999999 77877766
Q ss_pred eeCCCCCeE-EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 490 FEGHEAPVY-SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 490 ~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
+.+|..... ...+.+ +|..+.+.+.+|.++.|. ..+..++++|+|+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 655432111 122222 456677777888876663 236789999999988887641 335655
Q ss_pred EeCC---CCe-----eeE--EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 569 WNES---EGT-----IKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 569 wd~~---~~~-----~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
++.. .+. ... ...++.. ....++++++|+.+++...++.|.+||..+++........ ....+.+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 110 000 1112212 3345889999998888888999999998666654433322 22357899999
Q ss_pred CCCCEEEEEECCC
Q 001343 639 KEGNLLAVTTADN 651 (1096)
Q Consensus 639 ~~~~~l~~~~~dg 651 (1096)
+++.++++.+..+
T Consensus 300 ~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 300 SDGYLYFDCNQLH 312 (343)
T ss_dssp TTSCEEEEECCGG
T ss_pred CCCcEEEEeCccc
Confidence 9988877776543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-09 Score=118.55 Aligned_cols=238 Identities=9% Similarity=0.047 Sum_probs=161.8
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--cEEEEE-cC
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LS 483 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~i~iwd-~~ 483 (1096)
.....|+|+++++++++...++.|++||.+++..... ... ..... ++|+++++ .|+.+..++ .|.+|+ ..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~---~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV---HPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE---EET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe---ecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence 4688999999999777777779999999987654331 222 22233 99999999 777777765 799999 55
Q ss_pred CceEEEe----eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE----EeCCCCcE--EEEEEcCCCCEE
Q 001343 484 GRKLFNF----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHWC--TTMLYSADGSRL 553 (1096)
Q Consensus 484 ~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~i--~~l~~s~~~~~l 553 (1096)
+.....+ ......+.++++++. + ..|+.+..++.|+.||..+...... .......- ..++|+|++..|
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~-~-g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDET-E-EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTT-S-SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCC-C-CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 5443443 224456778888663 3 3555577789999999987654332 22222222 389999965555
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcC--------------ccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCe
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--------------KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN 618 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 618 (1096)
+.+.. ..+.|+.|+.... +..+.++. -.....++++++|+++++-. .++.|+.|++.++.
T Consensus 282 yv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 282 YMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 55542 3788999987644 33333322 12367799999999777777 78999999987776
Q ss_pred EEEEeecCC------------CCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 619 ILTSTDAEG------------GLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 619 ~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
......... .......+++++++.++++-..++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 544332200 1235788999999888888888888888765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-09 Score=132.61 Aligned_cols=244 Identities=11% Similarity=0.115 Sum_probs=159.8
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEE-----CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-- 475 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~-- 475 (1096)
.+|...+..++|||||++||.+. .+..|++||+.+|+.+.. .+.+ .....++|+ |++ .|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCcc
Confidence 34666899999999999998543 225799999999875432 1111 113578999 999 677777664
Q ss_pred -----------cEEEEE-cCCc----eEEEeeC-CCCCeEEEEeeecCCCcEEEEEEC----CCeEEEEEcCCCC-eeeE
Q 001343 476 -----------LIKVWE-LSGR----KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG-SRVD 533 (1096)
Q Consensus 476 -----------~i~iwd-~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~ 533 (1096)
.|++|+ -++. ++..... |.....++.+++ ||++|+.... +..|.++|+.+.. ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 399999 4433 2333333 445567778765 6677654432 2589999988764 3445
Q ss_pred EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee--eEEEcCcCccceEEEEEeCCCCEEEEEEc-CC--e
Q 001343 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--Q 608 (1096)
Q Consensus 534 ~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~ 608 (1096)
+..+....... ++++|..++..+........|..+|+.++.. .+.+..+....+ .|+++++.|+.... ++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeE
Confidence 55555544444 6777877776654322357899999988754 345555555333 78888988877664 43 6
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC----CcEEEEEcCCC
Q 001343 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD----NGFKILANAIG 661 (1096)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~ 661 (1096)
|++|++..+. ...+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 352 l~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGKR-VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSCE-EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCCe-eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 8999987554 44444322 2245667778888776666544 78999998776
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-10 Score=122.19 Aligned_cols=183 Identities=14% Similarity=0.142 Sum_probs=134.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.+..+++++... ++++|+.+ .+.||++...+...... ...++......+.. |++|+| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~---------~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSD---------STPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSS---------SCCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccc---------cccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 689999999998 78888877 55569986543110000 00011111234666 999999 99999999
Q ss_pred CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeee
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~ 504 (1096)
.++.|++||+.+..... ....|...+.++.+.+. .+++++.||.+.+|| .++.... +...|++++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765333 45567888988887754 378889999999999 6666543 445799999987
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCe--eeEE------e---CCCCcEEEEEEcCCCCEEEEEee
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGS--RVDY------D---APGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
+| ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-..
T Consensus 173 --kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 --SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp --SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred --Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 44 78899999999998887664 3344 2 25678999999999999887554
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-08 Score=109.71 Aligned_cols=228 Identities=10% Similarity=-0.008 Sum_probs=153.8
Q ss_pred CCCCEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 405 VPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
+..--.+..|+|++. .+++...++.|..||..+++.. .+ .....+.+++++++|+ ++++. ++.|.+|| .
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWK 81 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECC
Confidence 444567899999655 5555566789999999886532 12 2456799999999998 55543 57899999 5
Q ss_pred CCceEEEeeC----CCCCeEEEEeeecCCCcEEEEEEC---------CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC
Q 001343 483 SGRKLFNFEG----HEAPVYSICPHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1096)
Q Consensus 483 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 549 (1096)
+++....... ....++.+++.+ +|.++++... ...-.+|.++.................++|+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDP--AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECT--TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECC--CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 5554322221 123467788865 6666655432 133456665543333333333345788999999
Q ss_pred CCEEEEEeeccCCCCeEEEEeC--CCCeee--EEE---cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 001343 550 GSRLFSCGTSKDGDSFLVEWNE--SEGTIK--RTY---AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (1096)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~--~~~~~~--~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1096)
++.++.+.. ..+.|..|++ .++... +.+ ..... ....++++++|+..++....+.|..||..+++.+..
T Consensus 160 g~~lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 160 HKIFYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp SCEEEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred CCEEEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 998876543 2678999986 455432 222 22222 567799999998877777888999999999999988
Q ss_pred eecCCCCCCccEEEEe-CCCCEEEEEEC
Q 001343 623 TDAEGGLPNLPRLRFS-KEGNLLAVTTA 649 (1096)
Q Consensus 623 ~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 649 (1096)
+..+.. .+++++|. |+++.|++++.
T Consensus 236 i~~p~~--~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVD--KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSS--BEEEEEEESGGGCEEEEEEB
T ss_pred EECCCC--CceEEEEeCCCCCEEEEEcC
Confidence 877643 78999998 88887776664
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-08 Score=111.00 Aligned_cols=225 Identities=14% Similarity=0.036 Sum_probs=150.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
-..+.+|+|++..+++++..++.|.+||..+++... + .....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 357789999876678888888999999998765421 1 123579999999999887754
Q ss_pred CCCeEEEEEccCCCccccceeec-c-cccCEEEEEEecCCCcEEEEEEeC------CCcEEEEEcCCceEEEeeCCCCCe
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEGHEAPV 497 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~-~-h~~~v~~l~~s~d~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~~v 497 (1096)
. ..|.+||..+++... +.... + ....+.+++++|+|+ ++++... .+.|..++ +++. ..+..+....
T Consensus 108 ~-~gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~~~~~~~~ 181 (326)
T 2ghs_A 108 D-DGLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGKV-TKLFADISIP 181 (326)
T ss_dssp T-TEEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTEE-EEEEEEESSE
T ss_pred C-CCEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCcE-EEeeCCCccc
Confidence 4 459999998876432 11111 1 124689999999998 5554432 24555555 5443 3333333456
Q ss_pred EEEEeeecCCCcEEEE-EECCCeEEEEEcC--CC-Ce--ee---EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 498 YSICPHHKENIQFIFS-TAIDGKIKAWLYD--TM-GS--RV---DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~--~~-~~--~~---~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
..++|++ +++.++. .+.++.|.+|+++ ++ .. .. .+......+..+++.++|++.++... .+.|..
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEE
Confidence 7888866 5665544 4557899999986 43 21 11 12223346788999999987776543 678999
Q ss_pred EeCCCCeeeEEEcCcCccceEEEEEe-CCCCEEEEEEcC
Q 001343 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGED 606 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d 606 (1096)
||. +++.+..+..+.. .+.+++|+ ++++.|++++..
T Consensus 256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEecC
Confidence 998 6777777766544 68889998 888877666543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-09 Score=113.17 Aligned_cols=233 Identities=11% Similarity=0.041 Sum_probs=155.8
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
+.......+|+|+|+.+++++..++.|..|+. +++... +..+...+..++++++|++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence 45567899999999877888888999999997 454221 333566799999999999776
Q ss_pred EEECCCeEEEEEccCCCccccceeeccc-ccCEEEEEEecCCCcEEEEE----EeC-------------CCcEEEEE-cC
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVT----CGD-------------DKLIKVWE-LS 483 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h-~~~v~~l~~s~d~~~~~l~s----~s~-------------d~~i~iwd-~~ 483 (1096)
+...++.|.+|+.+ ++.........+. ...+.++++.++|+ +.++ |.. .+.|..|| .+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 65566889999986 4422111011111 23467899999998 6665 332 25677788 45
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC------CeEEEEEcCCCCee--eEE-eCCCCcEEEEEEcCCCCEEE
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSR--VDY-DAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~--~~~-~~~~~~i~~l~~s~~~~~l~ 554 (1096)
++..... .......++|++ ++..|+.+... +.|.+|++...... ..+ .........+++.++|+..+
T Consensus 179 g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 6554333 344567888866 66777777665 78999998754311 111 12233456789999999544
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEe
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1096)
+. .+.|.+|+. +++.+..+.... .+..++|+++++.|+.++.++ ++.++
T Consensus 255 ~~------~~gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 255 SS------GTGVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CC------SSEEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ec------CCcEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 43 235999998 577777776554 366788999998888888754 44443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.9e-05 Score=89.56 Aligned_cols=527 Identities=10% Similarity=-0.028 Sum_probs=279.8
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeC-CCCCeE
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVY 498 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~ 498 (1096)
+|+.+ ..+.|+..++++...... ..+ ..-..+..++|.+.+.. ++++-..++.|..++.+|.....+.. ......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~-~~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVA-IPL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEE-CCC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceE-EEc-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 456899999986543221 112 22356889999997764 55566678899999855544333322 223466
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
.+++.+. .+++.++-...+.|.+.+++.................+++.|....|+.... .....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 7887653 3355566666789999998755443333344456889999997666766542 125678888876554333
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
.+.. ......+++++++..|+.+. ..+.|..++++.... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVPN--VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EECS--CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EECC--CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 3332 22567799999877777665 567899999876544 233322 12456788765 44555555578888888
Q ss_pred cCCCccccccccCCCcccccCcceeE-EeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCC
Q 001343 658 NAIGLRSLRAVENPPFEALRTPIESV-ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1096)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg 736 (1096)
..++.. ...+..... .+..+ .+++.-+. ...+|..-.+. + .
T Consensus 235 k~tg~~-~~~l~~~~~-----~p~~i~v~~~~~q~----------------~~n~C~~~ng~--------------C--~ 276 (628)
T 4a0p_A 235 KTSGQN-RTIIQGHLD-----YVMDILVFHSSRQS----------------GWNECASSNGH--------------C--S 276 (628)
T ss_dssp TTTCCS-CEEEECSCC-----SCCEEEEECGGGSC----------------CCCTTTTTGGG--------------C--S
T ss_pred CCCCCc-eEEEecCCC-----Ccceeeeeeecccc----------------cceEeccCCCC--------------c--c
Confidence 777632 222221110 01122 12211100 00001000000 0 0
Q ss_pred CccceeeeeeecCCceEEEEcC-CCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCcccccc
Q 001343 737 KPKPWQLAEIVDSGQCRLVTMP-ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (1096)
Q Consensus 737 ~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~ 815 (1096)
.+.+-. +..-.....+ |........+|.. + ...++.+. ...|+-..++...
T Consensus 277 ~~C~~~------~~~~~~C~C~~g~~l~~d~~~C~~--~-~~~Ll~s~-~~~i~~i~l~~~~------------------ 328 (628)
T 4a0p_A 277 HLCLAV------PVGGFVCGCPAHYSLNADNRTCSA--P-TTFLLFSQ-KSAINRMVIDEQQ------------------ 328 (628)
T ss_dssp SEEEEE------TTTEEEEECSTTCEECTTSSCEEC--C-SSEEEEEE-TTEEEEECCCTTC------------------
T ss_pred hhhhcC------CCCCeeEEcCCCcEecccCCcCcc--c-cceeeeec-cceEEEEeccccc------------------
Confidence 000000 0000000110 0000111112221 1 22333332 3344433332100
Q ss_pred CccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEcccceEEEeecC------CCCCeeEEEEecCCCcE
Q 001343 816 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS------PPPASTFLAFHPQDNNI 887 (1096)
Q Consensus 816 ~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~~~------h~~~i~~l~~s~~d~~~ 887 (1096)
... ...... .-..+.+++|.+.+..|..+. .+.|+.+++........+.. ....+..+++....+++
T Consensus 329 -~~~-~~l~~~---~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nL 403 (628)
T 4a0p_A 329 -SPD-IILPIH---SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYI 403 (628)
T ss_dssp -CCC-EECCCT---TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEE
T ss_pred -Cce-EEEEeh---hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeE
Confidence 000 000111 234577899998777777666 47899998754332223322 23467899998833445
Q ss_pred EEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEec-CCcEEEE-Eecc--eEEEEEcccce
Q 001343 888 IAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLV-VHET--QLAIYDASKME 963 (1096)
Q Consensus 888 l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~-dg~~l~~-~~d~--~i~iwd~~~~~ 963 (1096)
.++-+..+.|.+.++.... . +.+. .... .....+++.| .|....+ .... .|...+.+ |.
T Consensus 404 Y~td~~~~~I~v~~~~G~~-~------------~~l~--~~~l-~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~ 466 (628)
T 4a0p_A 404 YWTCEATNVINVTRLDGRS-V------------GVVL--KGEQ-DRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GT 466 (628)
T ss_dssp EEEETTTTEEEEEETTSCE-E------------EEEE--ECTT-CCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SC
T ss_pred EEEcCCCCEEEEEECCCCe-E------------EEEE--eCCC-CceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CC
Confidence 5566677888888876432 0 0111 1111 2578999999 5666666 3333 56666665 33
Q ss_pred eccccccCCCCCCCceEEEEeeCCcEEEEEe-cCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCC
Q 001343 964 RIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1042 (1096)
Q Consensus 964 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~ 1042 (1096)
....+.... -.....++++++++.|..+. ..+.|...+++... +..+... ... .|..|+.. .+
T Consensus 467 ~~~~l~~~~--l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~---------~~~--~P~glav~--~~ 530 (628)
T 4a0p_A 467 EREVLFFSG--LSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDS---------NIL--QPVGLTVF--EN 530 (628)
T ss_dssp SCEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS---------SCS--CEEEEEEE--TT
T ss_pred CcEEEEecc--CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcC---------CCC--CcEEEEEE--CC
Confidence 333333322 45578999999877666554 45789999986543 3333211 111 12246664 35
Q ss_pred ceEEEEeeCCcEEEEccCCCC
Q 001343 1043 NQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1043 ~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
.++.+=...+.|...+..+|+
T Consensus 531 ~ly~tD~~~~~i~~~~k~~G~ 551 (628)
T 4a0p_A 531 WLYWIDKQQQMIEKIDMTGRE 551 (628)
T ss_dssp EEEEEETTTTEEEEEETTSSS
T ss_pred EEEEEECCCCeEEEEECcCCC
Confidence 666665566788888887776
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=6.1e-08 Score=105.58 Aligned_cols=223 Identities=13% Similarity=0.036 Sum_probs=145.2
Q ss_pred CEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc
Q 001343 408 SVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1096)
Q Consensus 408 ~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 485 (1096)
-..+.+|+|++. .+++...++.|..||..+++... + .....+.+++|+++|+ ++++. . ..|.+|| .+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----~-~~~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV----H-ALPFMGSALAKISDSK--QLIAS-D-DGLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE----E-ECSSCEEEEEEEETTE--EEEEE-T-TEEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE----E-ECCCcceEEEEeCCCe--EEEEE-C-CCEEEEECCCCc
Confidence 356789999855 55556667899999998764321 2 2346799999999998 55544 3 4599999 5666
Q ss_pred eEEEeeCC-----CCCeEEEEeeecCCCcEEEEEECC----CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 486 KLFNFEGH-----EAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 486 ~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
.. .+... ...+.++++.+ +|.++++...+ +...+|.+++ .....+.........++|+|+++.++.+
T Consensus 121 ~~-~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 121 LT-LHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAK-GKVTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EE-EEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEET-TEEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred EE-EEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEeC-CcEEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 43 33221 23477888866 56665554321 2234444443 3333332223356789999999988765
Q ss_pred eeccCCCCeEEEEeCC--CC-ee-----eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC
Q 001343 557 GTSKDGDSFLVEWNES--EG-TI-----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~--~~-~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1096)
.. ..+.|.+|+.. ++ .. ...+..... ....++++++|++.++...++.|.+|+. +++.+..+.....
T Consensus 197 ~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~ 271 (326)
T 2ghs_A 197 DT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK 271 (326)
T ss_dssp ET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS
T ss_pred EC---CCCEEEEEEcccccCCcccCceEEEECCCCCC-CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC
Confidence 43 26789999985 55 32 222222222 5667899999987777767789999998 5777777765543
Q ss_pred CCCccEEEEe-CCCCEEEEEECC
Q 001343 629 LPNLPRLRFS-KEGNLLAVTTAD 650 (1096)
Q Consensus 629 ~~~v~~~~~s-~~~~~l~~~~~d 650 (1096)
.+.+++|+ +++..|++++..
T Consensus 272 --~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 --QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp --BEEEEEEESTTSCEEEEEEBC
T ss_pred --CcEEEEEecCCCCEEEEEecC
Confidence 68999998 888777666543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-08 Score=110.18 Aligned_cols=236 Identities=11% Similarity=0.056 Sum_probs=153.6
Q ss_pred cccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
+...........|+|+|+ .++++..++.|..|+.. ++ .. .+..+...+..++++++|+ ++++...++.|.+|
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRS 112 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEE
Confidence 334555778899999999 55566677899999884 43 22 3445667899999999998 66665566889999
Q ss_pred EcCCceEEEeeCC----CCCeEEEEeeecCCCcEEEE----EEC-------------CCeEEEEEcCCCCeeeEEeCCCC
Q 001343 481 ELSGRKLFNFEGH----EAPVYSICPHHKENIQFIFS----TAI-------------DGKIKAWLYDTMGSRVDYDAPGH 539 (1096)
Q Consensus 481 d~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~ 539 (1096)
+.+++........ ...+..+++.+ +|.++++ |.. .+.|..||..+++..... ...
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 113 DADGQAHLLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp CTTSCEEEEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred CCCCCEEEEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 9556543222111 12356788755 6677775 332 245666666555443332 334
Q ss_pred cEEEEEEcCCCCEEEEEeecc--CCCCeEEEEeCCCCeee--EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 001343 540 WCTTMLYSADGSRLFSCGTSK--DGDSFLVEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
....++|+||++.|+.+.... .+.+.|+.|++..+... ..+..........++++++|+. .+++.+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~- 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS- 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-
Confidence 578899999999888775410 01268999998765411 1221111113445889999984 444444 5999998
Q ss_pred CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
.++.+..+.... .+..++|+++++.|++++.++..+
T Consensus 266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 567777776543 478999999999888888764333
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-05 Score=91.99 Aligned_cols=525 Identities=8% Similarity=-0.022 Sum_probs=267.3
Q ss_pred CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCce--EEEeeCCCCCeEEEEee
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK--LFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~ 503 (1096)
....|+..++........ .+...-..+..++|++.+.. ++++-...+.|..++.+|.. ...+...-.....+++.
T Consensus 16 ~~~~I~~i~~~~~~~~~~--~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT--IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp CSSBEEEECCC-----------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred ccccEEEEeCCCCcceEE--EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 346788888876421111 12233456889999997774 44455556788888855542 22333333467888886
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ....|...++...........
T Consensus 93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~- 168 (619)
T 3s94_A 93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS- 168 (619)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS-
T ss_pred ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC-
Confidence 53 23455566677899999987655444443444567789999987777665421 145677777654333222222
Q ss_pred CccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001343 584 RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 584 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
.-.....+++++++..|+.+. ..+.|..++++........... ......+++..+ .++++-...+.|...|..++.
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 222567799999877776665 5678999998765444333311 123467888665 444454567789999987773
Q ss_pred cccccccCCCcccccCcceeEE-eecCCCeEEecCCCCceeEeccCCCcCCCcccCCCC---ccCCCCCCccccCCCCCc
Q 001343 663 RSLRAVENPPFEALRTPIESVA-LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP---TSRSMDKPRTVDDVTDKP 738 (1096)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~---~~s~d~~~l~s~~~dg~i 738 (1096)
. ...+..... .+..+. +++..+-.. ..+|....+... ..++........+.+|..
T Consensus 246 ~-~~~i~~~~~-----~p~~i~v~~~~~qp~~---------------~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~ 304 (619)
T 3s94_A 246 G-LREIHSDIF-----SPMDIHAFSQQRQPNA---------------TNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK 304 (619)
T ss_dssp C-CEECCSCCC-----CCSEEEECCGGGSCCC---------------CCTTTTTGGGCSSEEEECSSTTSEEEECCTTCC
T ss_pred c-cEEEecCCC-----CCcEEEEEccccCCCc---------------cccccCCCCcccceEECCCCCCCceEeCCchhe
Confidence 2 222221110 111222 222111000 000111000000 000100000000000000
Q ss_pred cceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcc
Q 001343 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1096)
Q Consensus 739 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~ 818 (1096)
. .....+|.. .... ++..+..+.|+..+++....
T Consensus 305 l-----------------------~~d~~~C~~--~~~~-~Ll~~~~~~i~~i~l~~~~~-------------------- 338 (619)
T 3s94_A 305 L-----------------------LENGKTCKD--GATE-LLLLARRTDLRRISLDTPDF-------------------- 338 (619)
T ss_dssp B-----------------------CTTSSCBCS--SCSE-EEEEEESSCEEEEESSSTTC--------------------
T ss_pred e-----------------------cccCcccCC--CCce-EEEEEcccceEEEecCCCcc--------------------
Confidence 0 000001100 1112 22333344555555432111
Q ss_pred ccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCe
Q 001343 819 LLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (1096)
Q Consensus 819 ~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~ 896 (1096)
..+...+. .-..+.+++|.+.+..|..++ .+.|+.+++........+.........+++.+.++++.++-+..+.
T Consensus 339 ~~~~~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~ 415 (619)
T 3s94_A 339 TDIVLQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDR 415 (619)
T ss_dssp CCEECCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred ceeEEecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCc
Confidence 00010111 123467899998665665555 5889999986543333333334567789998634555556566788
Q ss_pred EEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecC-CcEEEEE--ecceEEEEEcccceeccccccCCC
Q 001343 897 IHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QVRMLVV--HETQLAIYDASKMERIRQWTPQDA 973 (1096)
Q Consensus 897 i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~d-g~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~ 973 (1096)
|.+.++.... .+.+. ...- .....+++.|. |.+..+. ....|...+.+ |.....+....
T Consensus 416 I~v~~~~G~~-------------~~~l~--~~~l-~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~- 477 (619)
T 3s94_A 416 IEVTRLNGTM-------------RKILI--SEDL-EEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTS- 477 (619)
T ss_dssp EEEEETTSCS-------------CEEEE--CTTC-CSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSS-
T ss_pred EEEEeCCCCe-------------EEEEE--ECCC-CCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCC-
Confidence 8888877543 01111 1111 25688999997 5544442 23567766665 33223332222
Q ss_pred CCCCceEEEEeeCCcEEEEEe-cCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCC
Q 001343 974 LSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG 1052 (1096)
Q Consensus 974 ~~~~i~~l~~s~dg~~la~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg 1052 (1096)
-.....++++++++.|..+. ..+.|..++++...........- . | .. .|+... +.++++=...+
T Consensus 478 -l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l----~---~---P~--glav~~--~~ly~tD~~~~ 542 (619)
T 3s94_A 478 -LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKI----P---H---IF--GFTLLG--DYVYWTDWQRR 542 (619)
T ss_dssp -CSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCC----C---S---SC--CEEEET--TEEEEECTTSS
T ss_pred -CCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCC----C---C---cE--EEEEEC--CEEEEeecCCC
Confidence 45678899998766666554 45679999987544333222111 0 1 12 355543 45555555567
Q ss_pred cEEEEccCCCC
Q 001343 1053 SVKVMEPSESE 1063 (1096)
Q Consensus 1053 ~i~vW~v~~~~ 1063 (1096)
.|..-+..+|.
T Consensus 543 ~I~~~~k~~g~ 553 (619)
T 3s94_A 543 SIERVHKRSAE 553 (619)
T ss_dssp CEEEEESSSCC
T ss_pred eEEEEEcCCCc
Confidence 78888877774
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-09 Score=116.54 Aligned_cols=174 Identities=13% Similarity=0.033 Sum_probs=131.0
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCc--------cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND--------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.++.+++++...++++|+.+ .+++|+++.... .... ....+.+ |+.++| |+. +|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence 68999999999999999987 566698764321 1111 1234666 999999 777 77777 8899999
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
|| .+.........|..++.++.+.+ . .+++++.||.|.+||+....... ....|++++|||+| ++.+..
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~ 180 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVN--N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLK 180 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEET
T ss_pred EEchhhhccCccceeecceeeEEecC--C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEc
Confidence 99 65555566677888888877643 2 38889999999999998776543 23479999999999 455554
Q ss_pred ccCCCCeEEEEeCCCCee--eEEE------c---CcCccceEEEEEeCCCCEEEEEE
Q 001343 559 SKDGDSFLVEWNESEGTI--KRTY------A---GFRKKSNGVVQFDTTQNHFLAVG 604 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~--~~~~------~---~~~~~~i~~~~~~~~~~~l~~~~ 604 (1096)
++.+++|+...+.. .+++ . +|. ..+.++.|.+++.++++-+
T Consensus 181 ----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~-~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 181 ----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE-YSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT-SEEEEEEESSSSEEEEEEE
T ss_pred ----CCcEEEEcCCCccccccceecCCcccccccCCC-eeEEEEEEecCCeEEEEEc
Confidence 89999999888776 6666 2 233 4788899999888777643
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-08 Score=120.13 Aligned_cols=308 Identities=12% Similarity=0.053 Sum_probs=188.5
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC-CCE-EEEEEcCCCCEEEEEECCCeEEEEEcc
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISV-SRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~spd~~~l~s~~~dg~i~vwd~~ 436 (1096)
.+++++.++.|.-+|..+|+.+-+..... . ........ ..+ ..++. ++..|++++.|+.|..+|..
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~-------~---~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~ 139 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQS-------D---RHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAK 139 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCC-------C---GGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCC-------C---ccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECC
Confidence 36667788999999999999875422110 0 00000000 000 01112 35688889999999999999
Q ss_pred CCCccccceeecccc---cCEEEEEEecCCCcEEEEEEe-----CCCcEEEEE-cCCceEEEeeCCC-C-----------
Q 001343 437 GSNDLRQHSQIDAHV---GAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-LSGRKLFNFEGHE-A----------- 495 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h~---~~v~~l~~s~d~~~~~l~s~s-----~d~~i~iwd-~~~~~~~~~~~~~-~----------- 495 (1096)
+|+.+-..... .+. ..+.+.-...++. +++..+ .++.|+.|| .+|+.+..+.... .
T Consensus 140 TG~~~W~~~~~-~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~ 216 (689)
T 1yiq_A 140 TGQRAWSVDTR-ADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGME 216 (689)
T ss_dssp TCCEEEEEECC-SCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHH
T ss_pred CCCEeeeecCc-CCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccc
Confidence 99876533211 011 1111100111443 333322 378999999 8999987765210 0
Q ss_pred ------------------Ce-EEEEeeecCCCcEEEEEECCCe-------------------EEEEEcCCCCeeeEEeCC
Q 001343 496 ------------------PV-YSICPHHKENIQFIFSTAIDGK-------------------IKAWLYDTMGSRVDYDAP 537 (1096)
Q Consensus 496 ------------------~v-~~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~ 537 (1096)
.+ ..+++.+ +...++.++.++. |..||.++++.+..+...
T Consensus 217 ~~~~~~~g~~w~~~~~g~~~w~~~~~d~--~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~ 294 (689)
T 1yiq_A 217 IAAKTWFGDAYVEQGGGGTAWDSFAYDP--ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT 294 (689)
T ss_dssp HHHTTCCSSTHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS
T ss_pred ccccccCCceeeecCCCCccccceeEcC--CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC
Confidence 01 1345544 4568888887764 999999999998877653
Q ss_pred CC---------cEEEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc--------------------
Q 001343 538 GH---------WCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-------------------- 585 (1096)
Q Consensus 538 ~~---------~i~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-------------------- 585 (1096)
.+ .........+|+ .++.+.. ++.++++|..+|+.+........
T Consensus 295 ~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~ 370 (689)
T 1yiq_A 295 PGDAWDYTATQHMILAELPIDGKPRKVLMQAPK----NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENA 370 (689)
T ss_dssp TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHH
T ss_pred CcccccccCCCCcEEEeeccCCcEEEEEEEECC----CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhc
Confidence 21 122222223554 5666654 89999999999998744321110
Q ss_pred ------------------cceEEEEEeCCCCEEEEEEc------------------------------------------
Q 001343 586 ------------------KSNGVVQFDTTQNHFLAVGE------------------------------------------ 605 (1096)
Q Consensus 586 ------------------~~i~~~~~~~~~~~l~~~~~------------------------------------------ 605 (1096)
.....++++|+...+++...
T Consensus 371 ~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~ 450 (689)
T 1yiq_A 371 AYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMA 450 (689)
T ss_dssp CTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHH
T ss_pred cccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCC
Confidence 00112678888888777532
Q ss_pred ---CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCccee
Q 001343 606 ---DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIES 682 (1096)
Q Consensus 606 ---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 682 (1096)
+|.|+.||+.+++.+.....+.. +..-.+...+.++++++.||.++.||..++ +.+-.+...... ...-
T Consensus 451 ~~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG-~~lw~~~~~~~~----~~~p 522 (689)
T 1yiq_A 451 KSWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTG-EKLWEQPAASGV----MAAP 522 (689)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCC----CSCC
T ss_pred CCcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCC-ccceeeeCCCCc----ccCc
Confidence 37899999999999988876542 334466678889999999999999999999 444444332111 1223
Q ss_pred EEeecCCCeEEec
Q 001343 683 VALKVSASSAVSS 695 (1096)
Q Consensus 683 ~~~s~~g~~lv~~ 695 (1096)
+.+..+|+..|+.
T Consensus 523 ~ty~~~G~qyv~~ 535 (689)
T 1yiq_A 523 VTYSVDGEQYVTF 535 (689)
T ss_dssp EEEEETTEEEEEE
T ss_pred eEEEECCEEEEEE
Confidence 6678888766443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=0.0001 Score=86.70 Aligned_cols=523 Identities=7% Similarity=-0.028 Sum_probs=264.1
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEccCCCcccc
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQ 443 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~ 443 (1096)
....|+..++........ .+...-..+..|+|++.+..|..+.. .+.|..+++++......
T Consensus 16 ~~~~I~~i~~~~~~~~~~------------------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~ 77 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN 77 (619)
T ss_dssp CSSBEEEECCC---------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE
T ss_pred ccccEEEEeCCCCcceEE------------------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE
Confidence 567888888875421110 02223446789999997777766654 57899999876532121
Q ss_pred ceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEEC--CCeE
Q 001343 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAI--DGKI 520 (1096)
Q Consensus 444 ~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i 520 (1096)
.+..--.....+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....+++.|.. | .|+.... .+.|
T Consensus 78 --v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~-g-~ly~tD~g~~~~I 152 (619)
T 3s94_A 78 --VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS-G-FMYWTDWGEVPKI 152 (619)
T ss_dssp --EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTT-T-EEEEEECSSSCEE
T ss_pred --EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCC-C-eEEEeccCCCCEE
Confidence 22223357899999997664 5556667789999997776554443 334456788887642 3 4444442 4667
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
...+++.................+++++++..|+.+.. ..+.|...|+..........+... ....+++..+ .+
T Consensus 153 ~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~l 226 (619)
T 3s94_A 153 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--IL 226 (619)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---TTCCEEEESSSCCEEC----------CCCEEESSS--EE
T ss_pred EEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---CCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EE
Confidence 76676644443333344557899999998888887643 367898888875444333322211 2234555443 44
Q ss_pred EEE-EcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe-CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccC
Q 001343 601 LAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS-KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1096)
Q Consensus 601 ~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 678 (1096)
+.+ ...+.|...|..+++....+..... ....+.+. |..+-. + .. .+. ...+
T Consensus 227 y~td~~~~~V~~~d~~tg~~~~~i~~~~~--~p~~i~v~~~~~qp~--~------------~n-~C~---------~~ng 280 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTGEGLREIHSDIF--SPMDIHAFSQQRQPN--A------------TN-PCG---------IDNG 280 (619)
T ss_dssp EEECTTTCSEEEEESSSCCCCEECCSCCC--CCSEEEECCGGGSCC--C------------CC-TTT---------TTGG
T ss_pred EEecCCCCEEEEEECCCCcccEEEecCCC--CCcEEEEEccccCCC--c------------cc-ccc---------CCCC
Confidence 444 3567888888877766555443221 23333332 110000 0 00 000 0011
Q ss_pred cceeEEe-ecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEc
Q 001343 679 PIESVAL-KVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (1096)
Q Consensus 679 ~v~~~~~-s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 757 (1096)
.+..+++ +|.+....+....+.. .......+......+|+.+. .+.|+..++.. .....+.+
T Consensus 281 ~Cs~lCl~~~~~~~~~C~C~~g~~------------l~~d~~~C~~~~~~~Ll~~~-~~~i~~i~l~~----~~~~~~~~ 343 (619)
T 3s94_A 281 GCSHLCLMSPVKPFYQCACPTGVK------------LLENGKTCKDGATELLLLAR-RTDLRRISLDT----PDFTDIVL 343 (619)
T ss_dssp GCSSEEEECSSTTSEEEECCTTCC------------BCTTSSCBCSSCSEEEEEEE-SSCEEEEESSS----TTCCCEEC
T ss_pred cccceEECCCCCCCceEeCCchhe------------ecccCcccCCCCceEEEEEc-ccceEEEecCC----CccceeEE
Confidence 1222222 1211101111111000 00000000011111222222 24555555542 11111122
Q ss_pred CCCCCCcccEEEEEEecCCceEEEee-cCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeee
Q 001343 758 PESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1096)
Q Consensus 758 ~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~ 836 (1096)
+- ..-..+..++|.+.+..|+.+. ..+.|+.++++.... .. .+.. .-.....
T Consensus 344 ~~--~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~----------------------~~-v~~~--~~~~p~G 396 (619)
T 3s94_A 344 QL--EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS----------------------QF-VVTA--QIAHPDG 396 (619)
T ss_dssp CC--SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------EE-EECS--SCSCCCE
T ss_pred ec--cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc----------------------EE-EEEC--CCCCcCc
Confidence 11 0234578899998655565554 467777766533110 00 0110 1234567
Q ss_pred eeecCCCcEEEEec--CCeEEEEEcccceEEEee-cCCCCCeeEEEEecCCCcEEEEeeC--CCeEEEEeeccceeeeee
Q 001343 837 IALSKNDSYVMSAT--GGKISLFNMMTFKVMTTF-MSPPPASTFLAFHPQDNNIIAIGTE--DSTIHIYNVRVDELCVWS 911 (1096)
Q Consensus 837 l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~-~~h~~~i~~l~~s~~d~~~l~s~~~--dg~i~iw~~~~~~~~~w~ 911 (1096)
+++...++.|..+. .+.|.+.++... ....+ ...-....+|++.| ....|..+.. .+.|...+++...
T Consensus 397 lAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp-~~G~ly~tD~g~~~~I~r~~~dG~~----- 469 (619)
T 3s94_A 397 IAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISEDLEEPRAIVLDP-MVGYMYWTDWGEIPKIERAALDGSD----- 469 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCCSEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCS-----
T ss_pred eEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECCCCCeeeEEEEc-CCCcEEEecCCCCCEEEEEccCCCc-----
Confidence 99987665555554 488999998543 33333 23446788999999 5334444432 3455555554332
Q ss_pred ccccccccceeeecCCCCCCCCCceEEEecCCcEEEE--EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcE
Q 001343 912 IDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL 989 (1096)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 989 (1096)
...+ ..+.- .....+++++++..|.. +..+.|..+++.... .+.+.... ......+++..+ .+
T Consensus 470 --------~~~l--~~~~l-~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~~~~~--l~~P~glav~~~-~l 534 (619)
T 3s94_A 470 --------RVVL--VNTSL-GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG-RRVLVEDK--IPHIFGFTLLGD-YV 534 (619)
T ss_dssp --------CEEE--ECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEEECC--CCSSCCEEEETT-EE
T ss_pred --------cEEE--EeCCC-CCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc-eEEEeccC--CCCcEEEEEECC-EE
Confidence 0011 11111 25678999987766666 456789889886443 23332111 233456665433 34
Q ss_pred EEEEecCCcEEEEecCCCc
Q 001343 990 VFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 990 la~~~~dg~i~vwd~~~~~ 1008 (1096)
..+-...+.|...+..+|.
T Consensus 535 y~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 535 YWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEECTTSSCEEEEESSSCC
T ss_pred EEeecCCCeEEEEEcCCCc
Confidence 4444456677777777763
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-08 Score=108.85 Aligned_cols=267 Identities=10% Similarity=-0.031 Sum_probs=160.6
Q ss_pred eEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE----------cCCeEEEEeCCCCeEEEEeecCCC-----C
Q 001343 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----------EDSQIKFWDMDNVNILTSTDAEGG-----L 629 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~-----~ 629 (1096)
.|.++|..+++.+.++..... + .+.++|++++++++. .++.|.+||..+++.+..+..... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 888999999999999976555 4 599999999998886 368899999999999999875411 0
Q ss_pred CCccEEEEeCCCCEEEEEEC--CCcEEE--EEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEec
Q 001343 630 PNLPRLRFSKEGNLLAVTTA--DNGFKI--LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~ 705 (1096)
.....++++|||++++++.. +..+.+ +|..+ ...+.... +..+.|+|+...
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~---------~~~~~p~g~~~~------------ 178 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSAS---------CFHIHPGAAATH------------ 178 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSS---------CCCCEEEETTEE------------
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCC---------ceEEccCCCeEE------------
Confidence 24678999999999998874 456888 88765 22221100 011233333221
Q ss_pred cCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeec-CCceEE---EEcCCCCCCcccEEEEEEecCCceEEE
Q 001343 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVD-SGQCRL---VTMPESTDTSSKVVRLLYTNSAVGLLA 781 (1096)
Q Consensus 706 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~---~~~~~~~~~~~~i~~l~~s~~~~~l~~ 781 (1096)
++.+.|+.+.+.++..... .+.... ..++- ...+. . ++++..++.
T Consensus 179 ------------------------~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v---g~~P~---~-~~~~~~~~~ 227 (368)
T 1mda_H 179 ------------------------YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC---SSQAA---Q-ANYPGMLVW 227 (368)
T ss_dssp ------------------------ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB---CSCCE---E-ETTTTEEEE
T ss_pred ------------------------EEEcCCCCEEEEECccccccCCeEEEEeeeeeeC---CCCcc---c-cccCCEEEE
Confidence 1222233333333321000 000000 00000 11222 3 566665666
Q ss_pred eecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--C--------
Q 001343 782 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--G-------- 851 (1096)
Q Consensus 782 ~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--d-------- 851 (1096)
.+. +.+.+.|+..... + .+..|.+.+........ .......++++||++.+.++. .
T Consensus 228 vs~-~~V~viD~~~~~~----~-----v~~~~~~~~~~~~~~~~----~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~ 293 (368)
T 1mda_H 228 AVA-SSILQGDIPAAGA----T-----MKAAIDGNESGRKADNF----RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA 293 (368)
T ss_dssp CBS-SCCEEEECCSSCC----E-----EECCCCSSCTHHHHTTE----EECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred EcC-CEEEEEECCCCcc----e-----EEEEEEecccccccccc----ccCcceeeEEcCCCCEEEEEeccccCcccccC
Confidence 666 7888877642110 0 11123322111000000 112233378999998777643 2
Q ss_pred CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCc-EEEEee-CCCeEEEEeeccce
Q 001343 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGT-EDSTIHIYNVRVDE 906 (1096)
Q Consensus 852 g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~-~l~s~~-~dg~i~iw~~~~~~ 906 (1096)
+.+.++|+.+++.++++.... ....++|+| |++ ++++.. .+++|.++|+.+.+
T Consensus 294 ~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 294 ENTSSVTASVGQTSGPISNGH-DSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEEEEESSSCCEEECCEEEE-EECEEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCEEEEECCCCeEEEEEECCC-CcceEEECC-CCCEEEEEccCCCCeEEEEECCCCc
Confidence 357799999999998886443 578999999 777 556666 59999999999988
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=7.2e-09 Score=112.92 Aligned_cols=267 Identities=7% Similarity=-0.081 Sum_probs=170.3
Q ss_pred EEEEEeCCC----eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE---------
Q 001343 359 LLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF--------- 425 (1096)
Q Consensus 359 llasg~~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~--------- 425 (1096)
++++...++ .|.+.|..+++.+.+ +.-...+ .+.++||+++++++.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~-------------------i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G 92 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSGSDFALASTSFARSAKG 92 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTSSCEEEEEEEETTTTSS
T ss_pred EEEECCccCCccceEEEEECCCCeEEEE-------------------EeCCCCC--ceEECCCCCEEEEEcccccccccC
Confidence 455555455 888999999988764 1112234 799999999999886
Q ss_pred -CCCeEEEEEccCCCccccceeeccc-----ccCEEEEEEecCCCcEEEEEEeC--CCcEEE--EE-cCCceEEEeeCCC
Q 001343 426 -TKHLIQLYSYAGSNDLRQHSQIDAH-----VGAVNDLAFAYPNKLLCVVTCGD--DKLIKV--WE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 426 -~dg~i~vwd~~~~~~~~~~~~l~~h-----~~~v~~l~~s~d~~~~~l~s~s~--d~~i~i--wd-~~~~~~~~~~~~~ 494 (1096)
.++.|.+||..+++.+..+. +.+. ......++|+|||+ +++.+.. +..|.+ +| .+ +..+.--.
T Consensus 93 ~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk--~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~ 166 (368)
T 1mda_H 93 KRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSA--CLLFFLFGSSAAAGLSVPGASD---DQLTKSAS 166 (368)
T ss_dssp SEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSS--CEEEEECSSSCEEEEEETTTEE---EEEEECSS
T ss_pred CCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEccCCCCeEEEEEEchhh---ceEEECCC
Confidence 36789999999998877432 2100 13456899999999 4555543 467888 88 45 44443211
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-----CCeee----EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
. ..+.|.+. ..+++.+.||.+.+.|+++ ++... .+.....+. . ++++..++..+. +.
T Consensus 167 -~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~~ 232 (368)
T 1mda_H 167 -C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----SS 232 (368)
T ss_dssp -C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----SC
T ss_pred -c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----CE
Confidence 1 11233333 3556677888888888876 22111 011112233 3 566666655541 67
Q ss_pred EEEEeCCCCe--eeEEEcCc------Cc---cceEEEEEeCCCCEEEEEEc-C--------CeEEEEeCCCCeEEEEeec
Q 001343 566 LVEWNESEGT--IKRTYAGF------RK---KSNGVVQFDTTQNHFLAVGE-D--------SQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 566 i~iwd~~~~~--~~~~~~~~------~~---~~i~~~~~~~~~~~l~~~~~-d--------g~i~iwd~~~~~~~~~~~~ 625 (1096)
+.+.|..+.. .+..+... .. .....+.++|+++.++++.. . +.+.++|+.+.+.+..+..
T Consensus 233 V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v 312 (368)
T 1mda_H 233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN 312 (368)
T ss_dssp CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred EEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC
Confidence 8888886532 22222111 00 01112679999998887643 2 3566999999999888875
Q ss_pred CCCCCCccEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCccccccccC
Q 001343 626 EGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
.. ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+..
T Consensus 313 g~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~v 355 (368)
T 1mda_H 313 GH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVEL 355 (368)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECCC
T ss_pred CC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEEC
Confidence 54 478999999997 566666 5899999999988 55555543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.5e-08 Score=117.38 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=90.3
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeEEeCCCCc-----------EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
..+++++.++.|..+|..+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 46777788899999999988888877654321 112333 4556777665 889999999999999
Q ss_pred EEEcCc-Cc---cceE-EEEEeCCCCEEEEEEc------CCeEEEEeCCCCeEEEEeecCCCC-----------------
Q 001343 578 RTYAGF-RK---KSNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDAEGGL----------------- 629 (1096)
Q Consensus 578 ~~~~~~-~~---~~i~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 629 (1096)
-.+... .. ..+. .... .+..+++++. ++.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 888754 10 0111 1111 2455666553 699999999999999887653321
Q ss_pred -------------CCccEEEEeCCCCEEEEEECCC
Q 001343 630 -------------PNLPRLRFSKEGNLLAVTTADN 651 (1096)
Q Consensus 630 -------------~~v~~~~~s~~~~~l~~~~~dg 651 (1096)
.....++++|++.+++.++.++
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~ 264 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNG 264 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCC
Confidence 0113578888888888877664
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.2e-08 Score=115.37 Aligned_cols=138 Identities=10% Similarity=0.018 Sum_probs=89.4
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeEEeCCCCc----------E-EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW----------C-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
..+++++.++.|..+|..+++.+..+...... + ..+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~----dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL----DGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc----CCEEEEEECCCCCEe
Confidence 46778888899999999999988877654321 0 11222 3456777665 899999999999998
Q ss_pred EEEcCc-CccceEEEEEeC--CCCEEEEEE------cCCeEEEEeCCCCeEEEEeecCCCC-------------------
Q 001343 578 RTYAGF-RKKSNGVVQFDT--TQNHFLAVG------EDSQIKFWDMDNVNILTSTDAEGGL------------------- 629 (1096)
Q Consensus 578 ~~~~~~-~~~~i~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~------------------- 629 (1096)
-.+... .......+..+| .+..+++++ .+|.|+.||..+|+.+..+......
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 877653 110000011111 134555554 3689999999999998877531100
Q ss_pred ----------CCccEEEEeCCCCEEEEEECCCc
Q 001343 630 ----------PNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 630 ----------~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
.....++++|++.+++.++.++.
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~ 257 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGS 257 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCC
Confidence 01135788888888888887764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-08 Score=109.77 Aligned_cols=260 Identities=8% Similarity=0.050 Sum_probs=154.5
Q ss_pred ccEEEEEEecCCceEEEeec--CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCC
Q 001343 765 SKVVRLLYTNSAVGLLALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1096)
Q Consensus 765 ~~i~~l~~s~~~~~l~~~~~--dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~d 842 (1096)
..+..++++++|+.+++... ++.+++|.++ +|+.. .|.. .. . ... .+...+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~------~g~~~------~~p~--~~--~-~~~--~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT------QDGLI------PFPP--QS--G-NAI--ITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE------TTEEE------ESCC--CC--S-SCC--CCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC------CCCee------cCCC--cc--c-Ccc--cceeEeeEEEEcCC
Confidence 57889999999987776532 3436667664 12211 1100 00 0 011 15567899999999
Q ss_pred CcEEEEec------CCeEEEEEcccceEEEeecCC------CCCeeEEEEecCCCcEEEEee---CCCeEEEEeecccee
Q 001343 843 DSYVMSAT------GGKISLFNMMTFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGT---EDSTIHIYNVRVDEL 907 (1096)
Q Consensus 843 g~~la~~~------dg~v~iwd~~~~~~~~~~~~h------~~~i~~l~~s~~d~~~l~s~~---~dg~i~iw~~~~~~~ 907 (1096)
|+++++.. +++|.+||+.+++.++.+..+ ......++++++++..+++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98777653 368999999999877766432 245689999983355555555 678999999987761
Q ss_pred eeeeccc---cccc------cceeee--cCCCCC---CCCCceEEEecCCcEEEE-Eecc-eEEEEEcccc--------e
Q 001343 908 CVWSIDT---WEKR------KSVTIH--IPAGKT---PTGDTRVQFNADQVRMLV-VHET-QLAIYDASKM--------E 963 (1096)
Q Consensus 908 ~~w~~~~---~~~~------~~~~~~--~~~~~~---~~~v~~v~fs~dg~~l~~-~~d~-~i~iwd~~~~--------~ 963 (1096)
...++. .... ....+. ...+.. ...+..++|+|||+.|++ ..++ .+..++.... +
T Consensus 158 -~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 158 -ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp -EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred -EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 111111 0000 000000 000000 014578999999998888 3333 4544443211 1
Q ss_pred ecccccc-CCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCC
Q 001343 964 RIRQWTP-QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1042 (1096)
Q Consensus 964 ~~~~~~~-~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~ 1042 (1096)
....+.. ++ ......++++++|.++++...++.|.+||..++++....... + ..++..++|.+ ++
T Consensus 237 ~~~~~~~~g~--~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~---------~--~~~p~~va~~~-~g 302 (343)
T 2qe8_A 237 LGSKIERYSE--KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE---------K--LSWTDSFNFGS-DG 302 (343)
T ss_dssp HHTTCEEEEE--CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG---------G--GSCEEEEEECT-TS
T ss_pred hhcceEeccc--CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC---------c--eecCCeeEECC-CC
Confidence 1111110 11 345678999999999998889999999998667654333211 1 12333699998 88
Q ss_pred ceEEEEeeCCcEEEEc
Q 001343 1043 NQFAIGLTDGSVKVME 1058 (1096)
Q Consensus 1043 ~~l~s~~~dg~i~vW~ 1058 (1096)
.++++.+..+.+.+|.
T Consensus 303 ~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 303 YLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CEEEEECCGGGSGGGB
T ss_pred cEEEEeCccccccccc
Confidence 8888877665554443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=6.5e-08 Score=115.99 Aligned_cols=308 Identities=13% Similarity=0.078 Sum_probs=191.2
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccc-ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS-IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~ 437 (1096)
.+++++.++.|.-+|..+|+.+-+.... ....... ...+.. -..+++ ++..|++++.|+.|..+|..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~-------~~~~~~~~~~~~~~--~~~~a~--~~~~v~v~~~dg~l~alD~~t 147 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQ-------IDRSTGFKGCCDVV--NRGVAL--WKGKVYVGAWDGRLIALDAAT 147 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCC-------CCGGGGGGSSSCSC--CCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCC-------CCccccccccccCC--CCCceE--ECCEEEEEcCCCEEEEEECCC
Confidence 3666677899999999999887442211 0000000 000000 011222 467888889999999999999
Q ss_pred CCccccceeeccc--ccCEEEEEEecCCCcEEEEEEeC------CCcEEEEE-cCCceEEEeeCCCCC------------
Q 001343 438 SNDLRQHSQIDAH--VGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWE-LSGRKLFNFEGHEAP------------ 496 (1096)
Q Consensus 438 ~~~~~~~~~l~~h--~~~v~~l~~s~d~~~~~l~s~s~------d~~i~iwd-~~~~~~~~~~~~~~~------------ 496 (1096)
|+.+-....-... ...+..--...++ .++.++. ++.|+.+| .+|+.+..+......
T Consensus 148 G~~~W~~~~~~~~~~~~~~~~~p~v~~~---~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 224 (677)
T 1kb0_A 148 GKEVWHQNTFEGQKGSLTITGAPRVFKG---KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKR 224 (677)
T ss_dssp CCEEEEEETTTTCCSSCBCCSCCEEETT---EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred CCEEeeecCCcCcCcCcccccCcEEECC---EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccc
Confidence 9876533211000 0112111111234 3444443 79999999 899998877543221
Q ss_pred --------------------eEEEEeeecCCCcEEEEEECCC-------------------eEEEEEcCCCCeeeEEeCC
Q 001343 497 --------------------VYSICPHHKENIQFIFSTAIDG-------------------KIKAWLYDTMGSRVDYDAP 537 (1096)
Q Consensus 497 --------------------v~~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~ 537 (1096)
...+++.+ ++..++.+..++ .|..+|.++++.+..+...
T Consensus 225 g~~~w~~~g~~~~~~~g~~~w~~~~~d~--~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~ 302 (677)
T 1kb0_A 225 AARTWDPSGKWWEAGGGGTMWDSMTFDA--ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET 302 (677)
T ss_dssp HHTTSCGGGCHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred ccccccccCceeEeCCCcccccceeEcC--CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC
Confidence 02345544 456787777664 5999999999988876643
Q ss_pred CC---------cEEEEEEcCCC---CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc----------cce-------
Q 001343 538 GH---------WCTTMLYSADG---SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----------KSN------- 588 (1096)
Q Consensus 538 ~~---------~i~~l~~s~~~---~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----------~~i------- 588 (1096)
.+ ....+....+| ..++.+.. ++.++++|..+|+.+..+..... ..+
T Consensus 303 ~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 378 (677)
T 1kb0_A 303 PGDNWDYTSTQPMILADIKIAGKPRKVILHAPK----NGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARD 378 (677)
T ss_dssp TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGC
T ss_pred CCcccccccCCCcEEEecccCCcEeeEEEEECC----CCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCc
Confidence 21 12223333467 56666655 89999999999998876653211 001
Q ss_pred -----------------EEEEEeCCCCEEEEEEcC-------------------------------------------Ce
Q 001343 589 -----------------GVVQFDTTQNHFLAVGED-------------------------------------------SQ 608 (1096)
Q Consensus 589 -----------------~~~~~~~~~~~l~~~~~d-------------------------------------------g~ 608 (1096)
..++++|+...+++...+ |.
T Consensus 379 ~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 458 (677)
T 1kb0_A 379 GSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR 458 (677)
T ss_dssp TTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE
T ss_pred CCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE
Confidence 146788988888876431 78
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecC
Q 001343 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1096)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 688 (1096)
|..||+.+++.+....... .+....+..++.++++++.||.+++||..++ +.+..+..... . ...-+.+..+
T Consensus 459 l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~~-~---~~~p~~y~~~ 530 (677)
T 1kb0_A 459 LLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEAPTGTG-V---VAAPSTYMVD 530 (677)
T ss_dssp EEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSC-C---CSCCEEEEET
T ss_pred EEEEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCC-ceeeeeeCCCC-c---ccCCEEEEeC
Confidence 9999999999988887543 3455567778889999999999999999999 44444433221 1 1223566788
Q ss_pred CCeEEe
Q 001343 689 ASSAVS 694 (1096)
Q Consensus 689 g~~lv~ 694 (1096)
|+..++
T Consensus 531 G~~~v~ 536 (677)
T 1kb0_A 531 GRQYVS 536 (677)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 876543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-07 Score=100.45 Aligned_cols=270 Identities=10% Similarity=0.016 Sum_probs=168.7
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
.+.+++.++.|..+|..+|+.+-..... ... . ........+.+. ...++..+++++.++.|..+|..+|
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~-------~~~-~--~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLA-------EKD-G--WFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECC-------C------CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCc-------ccc-c--cccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCC
Confidence 3667778999999999999876431110 000 0 000001223221 2224667888889999999999998
Q ss_pred CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCe-----EEEEeeecCCCcEEE
Q 001343 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV-----YSICPHHKENIQFIF 512 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~ 512 (1096)
+..-.. ............. + . .++.++.++.|..+| .+|+.+..+....... ..... .+..++
T Consensus 124 ~~~W~~---~~~~~~~~~p~~~-~-~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~ 192 (376)
T 3q7m_A 124 TVAWQT---KVAGEALSRPVVS-D-G--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAV 192 (376)
T ss_dssp CEEEEE---ECSSCCCSCCEEE-T-T--EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEE
T ss_pred CEEEEE---eCCCceEcCCEEE-C-C--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEE
Confidence 865432 1111111111222 3 3 577788899999999 8999887776432211 11122 124688
Q ss_pred EEECCCeEEEEEcCCCCeeeEEeCCCCc----EEE---EEEcC--CCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 513 STAIDGKIKAWLYDTMGSRVDYDAPGHW----CTT---MLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 513 s~~~dg~i~iwd~~~~~~~~~~~~~~~~----i~~---l~~s~--~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
.++.+|.+..+|..+++........... +.. +...| .+..+++++. ++.+..+|..+++.+......
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~~ 268 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY----NGNLTALDLRSGQIMWKRELG 268 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT----TSCEEEEETTTCCEEEEECCC
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec----CcEEEEEECCCCcEEeeccCC
Confidence 8888999999999998887766543210 000 00111 2455666654 789999999999988766532
Q ss_pred CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001343 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 584 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
....+.. ++..+++++.++.|+.+|..+++.+......... .+..... .+..|++++.+|.+..+|..++.
T Consensus 269 ---~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 269 ---SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR-LLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp ---CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS-CCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred ---CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC-cccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 2233333 4678888999999999999999988776522211 2233333 35688889999999999998883
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=0.00019 Score=84.52 Aligned_cols=528 Identities=9% Similarity=-0.015 Sum_probs=276.1
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE-ECCCeEEEEEccCCCcccc
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQ 443 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~ 443 (1096)
..+.|+..++.+....... .+. .-..+..|+|++.+..|..+ ..++.|..++++......
T Consensus 13 ~~~~I~~i~l~~~~~~~~~-----------------~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~- 73 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAI-----------------PLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH- 73 (628)
T ss_dssp ETTEEEEEESSCTTCEEEC-----------------CCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-
T ss_pred eCCcEEEEECCCCCcceEE-----------------EcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-
Confidence 5678999998765432110 011 23468899999977666655 456889999987643221
Q ss_pred ceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEE--CCCeE
Q 001343 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTA--IDGKI 520 (1096)
Q Consensus 444 ~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i 520 (1096)
.+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....+++.|. +| .|+... ..+.|
T Consensus 74 --v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G-~lY~tD~g~~~~I 148 (628)
T 4a0p_A 74 --VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EG-FMYWTEWGGKPKI 148 (628)
T ss_dssp --EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TT-EEEEEECSSSCEE
T ss_pred --EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CC-eEEEeCCCCCCEE
Confidence 12222245778999877664 4555666788999996665544443 33445688998764 33 454444 25677
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
...+++........ ........+++++++..|+.+.. ..+.|...|+..... +.+..... ....+++.. +..+
T Consensus 149 ~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~-~~ly 221 (628)
T 4a0p_A 149 DRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ-DYIY 221 (628)
T ss_dssp EEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET-TEEE
T ss_pred EEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC-CEEE
Confidence 77777654443333 34457889999999888887753 367899999875443 33332222 334566654 3333
Q ss_pred EEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcc
Q 001343 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 680 (1096)
++-...+.|...|..+++....+..... .+..+........- ... .+.. ..+.+
T Consensus 222 ~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~--------------~~n-~C~~---------~ng~C 275 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS--------------GWN-ECAS---------SNGHC 275 (628)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC--------------CCC-TTTT---------TGGGC
T ss_pred EecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc--------------cce-Eecc---------CCCCc
Confidence 3434578888888777766555543221 23333222111000 000 0000 01112
Q ss_pred eeEEeecC-CCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCC
Q 001343 681 ESVALKVS-ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE 759 (1096)
Q Consensus 681 ~~~~~s~~-g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 759 (1096)
..+++... +.+.-+. ..+... . .....+..++ .+++.+. ...|+-..+.. .......++-
T Consensus 276 ~~~C~~~~~~~~~C~C-~~g~~l-~-----------~d~~~C~~~~-~~Ll~s~-~~~i~~i~l~~----~~~~~~~l~~ 336 (628)
T 4a0p_A 276 SHLCLAVPVGGFVCGC-PAHYSL-N-----------ADNRTCSAPT-TFLLFSQ-KSAINRMVIDE----QQSPDIILPI 336 (628)
T ss_dssp SSEEEEETTTEEEEEC-STTCEE-C-----------TTSSCEECCS-SEEEEEE-TTEEEEECCCT----TCCCCEECCC
T ss_pred chhhhcCCCCCeeEEc-CCCcEe-c-----------ccCCcCcccc-ceeeeec-cceEEEEeccc----ccCceEEEEe
Confidence 22333222 3222111 111000 0 0000001111 1222211 13333333321 1110011111
Q ss_pred CCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeee
Q 001343 760 STDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1096)
Q Consensus 760 ~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~ 838 (1096)
..-..+..++|.+....|+.+.. .+.|+.++++.... . ..+.....+......+..++
T Consensus 337 --~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-----------~--------~v~~~~~~~~~~~~~p~glA 395 (628)
T 4a0p_A 337 --HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-----------F--------TVVVSSVPSQNLEIQPYDLS 395 (628)
T ss_dssp --TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------E--------EEEC--------CCCEEEEE
T ss_pred --hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-----------e--------EEEEcccccccccCCcceEE
Confidence 02356788999987666665554 56776666432110 0 00000000000133577899
Q ss_pred ecCCCcEEEEec--CCeEEEEEcccceEEEee-cCCCCCeeEEEEecCCCcEEEEeeCCC--eEEEEeeccceeeeeecc
Q 001343 839 LSKNDSYVMSAT--GGKISLFNMMTFKVMTTF-MSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDELCVWSID 913 (1096)
Q Consensus 839 ~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~-~~h~~~i~~l~~s~~d~~~l~s~~~dg--~i~iw~~~~~~~~~w~~~ 913 (1096)
+...++.|..++ .+.|.+.++. |+....+ ........+|++.|..+.++.+-.... .|...+++...
T Consensus 396 vD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~------- 467 (628)
T 4a0p_A 396 IDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE------- 467 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS-------
T ss_pred eeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC-------
Confidence 998877666554 4889999984 5555444 334567889999994444444432222 34444444332
Q ss_pred ccccccceeeecCCCCCCCCCceEEEecCCcEEEE--EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEE
Q 001343 914 TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 991 (1096)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 991 (1096)
...+- ...- .....+++.+++..|.. +..+.|...+++. ...+.+.... .....++++.. +.++.
T Consensus 468 ------~~~l~--~~~l-~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~~~~~~--~~~P~glav~~-~~ly~ 534 (628)
T 4a0p_A 468 ------REVLF--FSGL-SKPIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIVLEDSN--ILQPVGLTVFE-NWLYW 534 (628)
T ss_dssp ------CEEEE--CSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSS--CSCEEEEEEET-TEEEE
T ss_pred ------cEEEE--eccC-CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEEEEcCC--CCCcEEEEEEC-CEEEE
Confidence 01111 1111 15688999998777766 3467899999854 3334443221 34467777644 55555
Q ss_pred EEecCCcEEEEecCCCcee
Q 001343 992 ATFCDGNIGVFDADTLRLR 1010 (1096)
Q Consensus 992 ~~~~dg~i~vwd~~~~~~~ 1010 (1096)
+-...+.|...|..+|+..
T Consensus 535 tD~~~~~i~~~~k~~G~~~ 553 (628)
T 4a0p_A 535 IDKQQQMIEKIDMTGREGR 553 (628)
T ss_dssp EETTTTEEEEEETTSSSCC
T ss_pred EECCCCeEEEEECcCCCCc
Confidence 5556678888888777633
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-07 Score=103.00 Aligned_cols=256 Identities=9% Similarity=0.076 Sum_probs=163.8
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
.+.+++.++.|..+|..+|+.+-.... ... ....++ . .+..+++++.++.|..+|..+|
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~~W~~~~-------~~~--------~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG 163 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTVAWQTKV-------AGE--------ALSRPV----V--SDGLVLIHTSNGQLQALNEADG 163 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC-------SSC--------CCSCCE----E--ETTEEEEECTTSEEEEEETTTC
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEEeC-------CCc--------eEcCCE----E--ECCEEEEEcCCCeEEEEECCCC
Confidence 366778899999999999987643110 000 011111 1 2457778888999999999998
Q ss_pred CccccceeecccccCE------EEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCC-------eEEEEeee
Q 001343 439 NDLRQHSQIDAHVGAV------NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP-------VYSICPHH 504 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~~v------~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~-------v~~~~~~~ 504 (1096)
+.+.... .. ..+ ...... +. .++.++.++.+..+| .+|+.+......... +..+...|
T Consensus 164 ~~~W~~~---~~-~~~~~~~~~~~~~~~--~~--~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p 235 (376)
T 3q7m_A 164 AVKWTVN---LD-MPSLSLRGESAPTTA--FG--AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP 235 (376)
T ss_dssp CEEEEEE---CC-C-----CCCCCCEEE--TT--EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCC
T ss_pred cEEEEEe---CC-CCceeecCCCCcEEE--CC--EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc
Confidence 7664321 11 111 112222 33 577788899999999 889988776532110 00010111
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
.-.+..++.++.+|.+..+|..+++........ ....+.. ++..+++++. ++.+..+|..+++.+.......
T Consensus 236 ~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~--~~~~l~~~~~----~g~l~~~d~~tG~~~w~~~~~~ 307 (376)
T 3q7m_A 236 VVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIV--DGNRIYLVDQ----NDRVMALTIDGGVTLWTQSDLL 307 (376)
T ss_dssp EEETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEE--ETTEEEEEET----TCCEEEEETTTCCEEEEECTTT
T ss_pred EEECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceE--ECCEEEEEcC----CCeEEEEECCCCcEEEeecccC
Confidence 112357888889999999999988877665532 2444444 3556666664 7899999999999887766322
Q ss_pred ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc-EEEEeCCCCEEEEEECCCcEEEEE
Q 001343 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
......... .+..+++++.+|.|+++|..+++.+........ .+. .... .+..|++++.+|.|..|+
T Consensus 308 ~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~--~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 308 HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS--GFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTT--CBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC--cceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 212222222 257889999999999999999999888776332 222 2222 245788899999999886
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-08 Score=107.66 Aligned_cols=282 Identities=11% Similarity=0.045 Sum_probs=178.5
Q ss_pred eeecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC
Q 001343 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1096)
++.++ ..++...... +...+.++.+.++|. +..|+.+ |..+|. +++.+... ..+
T Consensus 42 l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~~-------------------~~~ 96 (330)
T 3hxj_A 42 LYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWRF-------------------DTK 96 (330)
T ss_dssp TEEEC-TTSCEEESSCGGGEEEECCEETTTTE--ECCSSCE--EEEECC-CGGGGGGS-------------------CC-
T ss_pred EEEEC-CCCcEEEEEecCCCcccceEEecCCc--EEEecCc--EEEECC-CCcEEEEE-------------------ECC
Confidence 44444 4444444433 344567888888886 3344444 888886 55543221 111
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
........+. +..|.+++.++.|..+|.. ++... ....+...+.++...+++. +..++.++.|..+|..++
T Consensus 97 ~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~g~ 167 (330)
T 3hxj_A 97 KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPDGT 167 (330)
T ss_dssp ----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTTSC
T ss_pred CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCCCC
Confidence 1112222233 5567778888999999988 65443 2333444566677777776 566788899999994488
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
.+..+......+.++... .++. +..++ +.|..+| .++............+.++...++|...+.. . ++.
T Consensus 168 ~~~~~~~~~~~~~~~~~d--~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t-~----~~g 236 (330)
T 3hxj_A 168 EKWRFKTNDAITSAASIG--KDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTS-L----DGH 236 (330)
T ss_dssp EEEEEECSSCCCSCCEEC--TTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEE-T----TTE
T ss_pred EeEEEecCCCceeeeEEc--CCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEc-C----CCe
Confidence 877776655566666653 3444 44555 8888898 6666666666665678888888888655543 2 678
Q ss_pred EEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE
Q 001343 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1096)
+..+|. +++.+..+..... ....+.+.+++ .+++++.+|.|..+|. +++.+..+..... .+.++...+++. |.
T Consensus 237 l~~~~~-~g~~~~~~~~~~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~--~~~~~~~d~~g~-l~ 309 (330)
T 3hxj_A 237 LYAINP-DGTEKWRFKTGKR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSW--IIATPVIDENGT-IY 309 (330)
T ss_dssp EEEECT-TSCEEEEEECSSC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSC--CCSCCEECTTCC-EE
T ss_pred EEEECC-CCCEeEEeeCCCC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCc--cccceEEcCCCE-EE
Confidence 888874 5666555554332 23334455444 6777888889999996 6777766665433 677788877776 55
Q ss_pred EEECCCcEEEEEcCC
Q 001343 646 VTTADNGFKILANAI 660 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~~ 660 (1096)
.++.+|.+++.....
T Consensus 310 ~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 310 FGTRNGKFYALFNLE 324 (330)
T ss_dssp EECTTSCEEEEEC--
T ss_pred EEcCCCeEEEEeccc
Confidence 688899999876543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=0.00058 Score=85.96 Aligned_cols=285 Identities=8% Similarity=0.017 Sum_probs=151.1
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC----CCEEE
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----GNYVG 422 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----~~~l~ 422 (1096)
-.|+++-.+| +|+.|+..|.=.+|.+.....-....+.+. . --..-++|.+++.-.. ...|+
T Consensus 329 ~ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~-----------~-~~~N~~PI~D~~v~d~~~~~~~~i~ 394 (1158)
T 3ei3_A 329 AECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAM-----------E-TFTNLGPIVDMCVVDLERQGQGQLV 394 (1158)
T ss_dssp CSEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEE-----------E-EECCCCSEEEEEEECTTSSSCCEEE
T ss_pred ccEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeE-----------e-eecCcCCceeEEEEccCCCCCCeEE
Confidence 3566666666 688888888778887765321000000000 0 1123467877777532 23555
Q ss_pred EEE---CCCeEEEEEccCCCccccceeecccccCEEEEEEec---CCCcEEEEEEeCCCcEEEEEcCCceEEEee--CCC
Q 001343 423 VAF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHE 494 (1096)
Q Consensus 423 s~~---~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~---d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~ 494 (1096)
+++ .+|.++++.-.-+-.......+.+ ...++.+.... .+. +|+.+..+.+ .++..++..+.... +..
T Consensus 395 ~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~~e~veev~~~gf~ 470 (1158)
T 3ei3_A 395 TCSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLNGEEVEETELMGFV 470 (1158)
T ss_dssp EEECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEETTEEEEECCTTCC
T ss_pred EEECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEeCCccccccccccc
Confidence 443 357888875432211111113432 35666666432 234 6676666666 45554344444332 111
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
.....++...-++ ..++=.. ...|++.+.........+.... ..|...+.+. .+++.+. .+.+..+++..
T Consensus 471 ~~~~TL~~~~l~~-~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~~ 541 (1158)
T 3ei3_A 471 DDQQTFFCGNVAH-QQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIHP 541 (1158)
T ss_dssp SSSCEEEEEEETT-TEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEET
T ss_pred CCCCcEEEEEcCC-CeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEeeC
Confidence 1111222211112 2333222 2345666665544555555443 3566666553 3565553 56777777766
Q ss_pred CeeeEEEcCcCccceEEEEEeCC------CCEEEEEEc-CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe--CCCCEE
Q 001343 574 GTIKRTYAGFRKKSNGVVQFDTT------QNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS--KEGNLL 644 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l 644 (1096)
++........-...+.|+++.+. ..++++|.. |++++|+++.+.+.+........ ....++.+. ....+|
T Consensus 542 ~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L 620 (1158)
T 3ei3_A 542 QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYL 620 (1158)
T ss_dssp TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEE
T ss_pred CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEE
Confidence 54332222112236888888763 368899986 99999999998777655544321 133444433 234678
Q ss_pred EEEECCCcEEEEEcC
Q 001343 645 AVTTADNGFKILANA 659 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~ 659 (1096)
.+|-.||.+.-+.+.
T Consensus 621 ~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 621 LCALGDGALFYFGLN 635 (1158)
T ss_dssp EEEETTSEEEEEEEC
T ss_pred EEEeCCCeEEEEEEc
Confidence 888899988766653
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-07 Score=100.95 Aligned_cols=237 Identities=14% Similarity=0.133 Sum_probs=152.4
Q ss_pred EEEc--CCCCcEEEEEeCCCeEEEEecCCC--CeeecccceeecccccCccccccccccC-CCCEEEEEEcCCCCEEEEE
Q 001343 350 MDFH--PSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 350 v~fs--p~g~~llasg~~dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~l~s~ 424 (1096)
..++ ++++++++.|..++.|.|+|+.+. +.... +..+ ...+.... ...-..+..+|+| .++++
T Consensus 87 ~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~---k~ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~ 154 (462)
T 2ece_A 87 PNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII---KVIE--------PEEVKKVSGYSRLHTVHCGPDA-IYISA 154 (462)
T ss_dssp TTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE---EEEC--------HHHHHHHHCEEEEEEEEECSSC-EEEEE
T ss_pred cccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee---eeec--------hhhcccccCCCcccceeECCCe-EEEEc
Confidence 3457 899988888888999999999754 11111 1100 00001111 1245667889999 66665
Q ss_pred ECC------CeEEEEEccCCCccccceeecccc-cCEEEEEEecCCCcEEEEEEe-------------------CCCcEE
Q 001343 425 FTK------HLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG-------------------DDKLIK 478 (1096)
Q Consensus 425 ~~d------g~i~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s-------------------~d~~i~ 478 (1096)
..+ |.|.++|.++++.+.... ..... .--..+.|+|+++ .+++.. .+.+|.
T Consensus 155 ~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~ 231 (462)
T 2ece_A 155 LGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIH 231 (462)
T ss_dssp EEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEE
T ss_pred CCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEE
Confidence 544 789999999988776432 12222 2345688999999 777774 478999
Q ss_pred EEE-cCCceEEEeeCC-C-CCeEEEEeeecCCCcEEEEEE------CCCeEEEEEcCCCCeee--E--EeCC--------
Q 001343 479 VWE-LSGRKLFNFEGH-E-APVYSICPHHKENIQFIFSTA------IDGKIKAWLYDTMGSRV--D--YDAP-------- 537 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~--~--~~~~-------- 537 (1096)
+|| .+++.+.++..- . .....+.|.++++++++++++ .+++|.+|..+.+.... . +...
T Consensus 232 v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 232 FWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp EEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred EEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence 999 777777777642 1 234456664455777777776 46788887765422111 1 1100
Q ss_pred --------CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC---CeeeEEEcCcCc---------c----ceEEEEE
Q 001343 538 --------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRK---------K----SNGVVQF 593 (1096)
Q Consensus 538 --------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~---------~----~i~~~~~ 593 (1096)
......+.+|+||++|.++.. +.+.|.++|+.. .+.+..+..... . ....+.+
T Consensus 312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l 388 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI 388 (462)
T ss_dssp GGGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred cccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE
Confidence 234678999999999998765 478999999853 355555543210 0 1355889
Q ss_pred eCCCCEEEEEE
Q 001343 594 DTTQNHFLAVG 604 (1096)
Q Consensus 594 ~~~~~~l~~~~ 604 (1096)
+|+|++++++.
T Consensus 389 SpDGk~LyVaN 399 (462)
T 2ece_A 389 SRDGRRVYVTN 399 (462)
T ss_dssp CTTSSEEEEEC
T ss_pred cCCCCEEEEEc
Confidence 99999999886
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=9e-10 Score=122.16 Aligned_cols=190 Identities=7% Similarity=-0.043 Sum_probs=112.6
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
++..|++++.||.|+.||..+|+.+.. +.. +.+.+..+..++. .+++++.|+.|+.|| .+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 578999999999999999999987653 322 4455555666776 677788999999999 78988777654321
Q ss_pred CeEEEEeeecC-CCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 496 PVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 496 ~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
... ...|.- .+..+++++.|+.++.||..+++....+..+. ...++|++..+++++. ++.|+.||.++|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 001111 23478888999999999999988877665543 2345568888888876 889999999999
Q ss_pred eeeEEEcCcCccceEEEEEeCCC---CEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
+.+..+.... .....+..+. ..+++++.+|.|+.||..+++.+......
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA 202 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 8776654321 1112233322 56778899999999999999988877643
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.7e-08 Score=104.85 Aligned_cols=261 Identities=13% Similarity=0.064 Sum_probs=168.8
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCC
Q 001343 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg 428 (1096)
+..+..+|. +..|+.++.|..|| .+++.+.. ...+...+.++...++|... +++.+
T Consensus 24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~-v~t~~- 79 (330)
T 3hxj_A 24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIY-FGSDK- 79 (330)
T ss_dssp CCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEEC-CSSCE-
T ss_pred CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEE-EecCc-
Confidence 345556775 55567789999999 88876542 11123346777777777644 44444
Q ss_pred eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCCC
Q 001343 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENI 508 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 508 (1096)
|..+|. +++.+.. +...........+. ++ .+..++.++.|..+|..++...........+.++...+ ++
T Consensus 80 -l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~--~g 148 (330)
T 3hxj_A 80 -VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSE--DG 148 (330)
T ss_dssp -EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECT--TS
T ss_pred -EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcC--CC
Confidence 888886 5554432 22222222333333 44 57778889999999944887777765555556655532 44
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccce
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i 588 (1096)
.++.++.++.|..+|.. ++....+......+.++.+.+++...+.. +.|..+| .+++....+..... .+
T Consensus 149 -~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~~-~~ 217 (330)
T 3hxj_A 149 -TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGYW-TV 217 (330)
T ss_dssp -CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSSC-CC
T ss_pred -EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCCc-ce
Confidence 47778888999999988 66666666666667778887888765543 5689999 77777766654433 56
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.++...+++ .+.+++.++.|..++. +++.+..+..... .+..+.+.+++ .|.+++.+|.|..+|. ++
T Consensus 218 ~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g 284 (330)
T 3hxj_A 218 TRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DG 284 (330)
T ss_dssp SCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TS
T ss_pred eceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CC
Confidence 667777776 4666777888999985 5566655554332 34556666555 5667778888999986 45
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-09 Score=120.65 Aligned_cols=188 Identities=11% Similarity=0.088 Sum_probs=106.9
Q ss_pred CCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccc
Q 001343 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKS 920 (1096)
Q Consensus 842 dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~ 920 (1096)
++..|++++ +|.|+.||..+|+.+.++.. +.+.+..+.. ++..+++++.||.|..||..+++ ..|.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~-~~w~~~~~~~--- 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNE-GLTKLPFTIP--- 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----C-CSEECSCCHH---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCc-eeeeeeccCc---
Confidence 455666666 79999999999999988876 5566666667 77788888999999999999887 4444322100
Q ss_pred eeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcE
Q 001343 921 VTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 999 (1096)
Q Consensus 921 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i 999 (1096)
... .. . . .+..++ .+++ +.++.|..||..+|+.+-.+..+ . ...++|++..+++++.|+.|
T Consensus 81 ~~~---~~--s-p----~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~---~----~~~~~p~~~~v~~~~~dg~v 142 (369)
T 2hz6_A 81 ELV---QA--S-P----CRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSA---F----ADSLSPSTSLLYLGRTEYTI 142 (369)
T ss_dssp HHH---TT--C-S----CC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEE
T ss_pred ccc---cc--C-c----eEecCC-EEEEEeCCCEEEEEECCCCcEEEEecCC---C----cccccccCCEEEEEecCCEE
Confidence 000 00 0 1 111233 4555 78899999999999987665533 1 24556788999999999999
Q ss_pred EEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCC---ceEEEEeeCCcEEEEccCCCCCccccC
Q 001343 1000 GVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP---NQFAIGLTDGSVKVMEPSESEGKWGVS 1069 (1096)
Q Consensus 1000 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~---~~l~s~~~dg~i~vW~v~~~~~~~~~~ 1069 (1096)
+.||..+|+.+....... + .+ .++.+ +. ..+++++.||.|+.||..+|+..|...
T Consensus 143 ~a~d~~tG~~~W~~~~~~--------~----~~--~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 143 TMYDTKTRELRWNATYFD--------Y----AA--SLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp ECCCSSSSSCCCEEEEEE--------E----CC--BCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEECCCCCEEEeEeccc--------c----cC--ccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 999999998665443111 1 11 12222 21 567778899999999999999888765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.3e-07 Score=97.00 Aligned_cols=232 Identities=8% Similarity=-0.016 Sum_probs=147.1
Q ss_pred cCCCcEEEEEEeCCCcEEEEE-cCC----ceEEEee------C-CCCCeEEEEeeecCCCcEEEEEECC------CeEEE
Q 001343 461 YPNKLLCVVTCGDDKLIKVWE-LSG----RKLFNFE------G-HEAPVYSICPHHKENIQFIFSTAID------GKIKA 522 (1096)
Q Consensus 461 ~d~~~~~l~s~s~d~~i~iwd-~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~i 522 (1096)
+++++ ++++|..++.|.++| .+. +...+++ . -...-..+...| +| +++++..+ |.|.+
T Consensus 93 ~~r~~-l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p--dG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IERRF-LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP--DA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CCSCE-EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS--SC-EEEEEEEETTSCSCCEEEE
T ss_pred ccCCE-EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC--Ce-EEEEcCCCcCCCCCCeEEE
Confidence 77775 677888899999999 544 4445552 0 011223344434 66 66666555 78999
Q ss_pred EEcCCCCeeeEEeCCCC---cEEEEEEcCCCCEEEEEeec----------c-----CCCCeEEEEeCCCCeeeEEEcCc-
Q 001343 523 WLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGTS----------K-----DGDSFLVEWNESEGTIKRTYAGF- 583 (1096)
Q Consensus 523 wd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~l~~~~~~----------~-----~~~~~i~iwd~~~~~~~~~~~~~- 583 (1096)
.|..+.+.+..+..... --+.+.|+|+++.+++.... . .....|.+||+.+++.+.++...
T Consensus 169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 99999888877763322 23458889999988887410 0 12679999999999988888763
Q ss_pred CccceEEEEE--eCCCCEEEEEE------cCCeEEEEeCCCCeEE--EEeecCCC----------------CCCccEEEE
Q 001343 584 RKKSNGVVQF--DTTQNHFLAVG------EDSQIKFWDMDNVNIL--TSTDAEGG----------------LPNLPRLRF 637 (1096)
Q Consensus 584 ~~~~i~~~~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~~--~~~~~~~~----------------~~~v~~~~~ 637 (1096)
.+.....+.| +|++++++++. .+++|.+|..+.+... +.+..... ......|.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 2223334555 99999988877 4568888777655321 11111100 125789999
Q ss_pred eCCCCEEEEEEC-CCcEEEEEcCCCc--cccccccCCC---------cccccCcceeEEeecCCCeEEecC
Q 001343 638 SKEGNLLAVTTA-DNGFKILANAIGL--RSLRAVENPP---------FEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 638 s~~~~~l~~~~~-dg~i~iwd~~~~~--~~~~~~~~~~---------~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
++||++|.++.. .+.|.+||+.+.. +....+.... ..........+.++|||+++..+.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999988876 6889999986431 2222221110 001122356788888888874443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-05 Score=84.77 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=144.9
Q ss_pred CCEEEEEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
..+..++|++++..|..+. .++.|.+++.+++.... .+.........+++.+++.. +.++....+.|.+++.++.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 3578999999877666554 46899999997654321 12222356899999997663 4555666789999995554
Q ss_pred eEEEeeC-CCCCeEEEEeeecCCCcEEEEEEC---CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccC
Q 001343 486 KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1096)
Q Consensus 486 ~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~ 561 (1096)
....+.. .......+++.+. +..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~--~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV--RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT--TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeC--CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 4333322 2245678888763 345554443 468888887644332222233346889999999888877654
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
+.+.|..+|.........+.+.. ....++.. +..++.+. ..+.|..+|..+++.+..+.... ......+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 36799999997655444444322 23445554 45555555 56899999999999888886432 124678888887
Q ss_pred CC
Q 001343 641 GN 642 (1096)
Q Consensus 641 ~~ 642 (1096)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.6e-05 Score=80.79 Aligned_cols=258 Identities=12% Similarity=0.022 Sum_probs=154.5
Q ss_pred CEEEEEECCCeEEEEEccCCCccc--cceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCC
Q 001343 419 NYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEA 495 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~~~~--~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~ 495 (1096)
.+|+.+.. +.|+.+++++..... ....+......+..++|++++.. ++++...++.|..++..+.....+. ....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555553 488889987654211 00012222346789999997764 5556666789999995554433332 2234
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
....+++.+. ++.++++....+.|.+++++.................++++|++..|+.+... ...+.|..+++...
T Consensus 80 ~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg~- 156 (267)
T 1npe_A 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGT- 156 (267)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSC-
T ss_pred CccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC-CCCcEEEEEecCCC-
Confidence 6788888663 23455555567899999987544333333333467899999987777665431 11367888887543
Q ss_pred eeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
....+..........+++++++..|+.+. ..+.|.+++.............. ....++.. ++.++++....+.|.
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~---~P~gi~~d-~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTNSVI 232 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC---CceEEEEe-CCEEEEEECCCCeEE
Confidence 33333211122567799999887776655 56799999997655444443221 34566664 344444444568899
Q ss_pred EEEcCCCccccccccCCCcccccCcceeEEeecCCC
Q 001343 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1096)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 690 (1096)
.+|..++ +....+..... .....+++.|++.
T Consensus 233 ~~d~~~g-~~~~~i~~g~~----~~p~gi~~~~~~~ 263 (267)
T 1npe_A 233 AMDLAIS-KEMDTFHPHKQ----TRLYGITIALSQC 263 (267)
T ss_dssp EEETTTT-EEEEEECCSSC----CCCCCEEEECSCC
T ss_pred EEeCCCC-CceEEEccccc----cccceeeecCccC
Confidence 9999887 44444432110 1245677777764
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-07 Score=104.15 Aligned_cols=279 Identities=11% Similarity=0.045 Sum_probs=175.9
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeecccc------eeecccccCcccccc--------ccccC------CCCEEEEEEcC-
Q 001343 358 TLLLVGSSNGEITLWELAMRDRLVSKPF------KIWDMAACSLPFQAS--------IFKDV------PISVSRVAWSP- 416 (1096)
Q Consensus 358 ~llasg~~dg~I~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------~~~~h------~~~V~~l~~sp- 416 (1096)
|.+.||+..|.|+|+-+-+++.+....+ .-|-+...+..+... .+..+ .+.......|.
T Consensus 16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t 95 (595)
T 1fwx_A 16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT 95 (595)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE
T ss_pred EEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC
Confidence 4577899999999999999998865221 112221111111100 01111 12233355555
Q ss_pred ----CCCEEEEEECC-CeEEEEEccCCCccccceeecccccCEEEEEE-e-cCCCcEEEEEEe-----------------
Q 001343 417 ----DGNYVGVAFTK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-A-YPNKLLCVVTCG----------------- 472 (1096)
Q Consensus 417 ----d~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~-s-~d~~~~~l~s~s----------------- 472 (1096)
||++|.+...+ +.|.+.|+.+.++.+.+ ++. ....+..+++ + |+++ +++.++
T Consensus 96 ~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-~ip-~g~~phg~~~~~~p~~~--~v~~~~~~~~p~~~dg~~l~~~~ 171 (595)
T 1fwx_A 96 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL-EIP-NAKGIHGLRPQKWPRSN--YVFCNGEDETPLVNDGTNMEDVA 171 (595)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE-ECS-SCCSEEEEEECCSSBCS--EEEEEECSCEESSCSSSSTTCGG
T ss_pred CCCcCCCEEEEEcCCCCEEEEEECCCceEeeEE-eCC-CCCCCcceeeeecCCCc--EEEEecccccccCCCCccccccc
Confidence 89999887664 57999999998766633 232 2345888898 4 8999 555553
Q ss_pred -CCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC--------------------------------
Q 001343 473 -DDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-------------------------------- 518 (1096)
Q Consensus 473 -~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------------------------------- 518 (1096)
.++.+.+.| .+.+.+.++.--. ....+++++ +|.++++.+.+.
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCeEEEEEEeCC-CccceEECC--CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 346899999 7777777765322 234455655 667887777543
Q ss_pred ------eEEEEEcCC--CCe-eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe------------ee
Q 001343 519 ------KIKAWLYDT--MGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT------------IK 577 (1096)
Q Consensus 519 ------~i~iwd~~~--~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~------------~~ 577 (1096)
.|.+.|..+ +.. ...+. .+....++.++|||+++++++. ....|.++|+.+.+ ..
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~---~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGK---LSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECT---TSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred CeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCC---CCCeEEEEECcccccccccccCcccceE
Confidence 355666665 333 22222 1234567899999999998765 48899999998653 23
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC----------CeEEEEeecCCC---CCCccEEEEeCCCCEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----------VNILTSTDAEGG---LPNLPRLRFSKEGNLL 644 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~---~~~v~~~~~s~~~~~l 644 (1096)
..... +.....++|+++|...++.--|++|.+||+.. .+.+..+..+.. ...-..+.++|||++|
T Consensus 325 ~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 325 AEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp ECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred EEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence 33322 22456689999994334455799999999987 567777776532 1111334568999999
Q ss_pred EEEEC
Q 001343 645 AVTTA 649 (1096)
Q Consensus 645 ~~~~~ 649 (1096)
++...
T Consensus 403 ~~~Nk 407 (595)
T 1fwx_A 403 VCLSK 407 (595)
T ss_dssp EEEES
T ss_pred EEcCC
Confidence 98864
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-06 Score=98.21 Aligned_cols=192 Identities=9% Similarity=0.021 Sum_probs=132.9
Q ss_pred CCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC-CCCeEEEEeeecCCCcEEEEEE------------------CCCeEE
Q 001343 462 PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTA------------------IDGKIK 521 (1096)
Q Consensus 462 d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~------------------~dg~i~ 521 (1096)
||++ ++++...++.|.+.| .+.++...+.-. ......+++..-+++.++++++ .++.+.
T Consensus 100 DG~~-lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCE-EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 8885 455566677899999 788877754322 2347777764224667888885 346799
Q ss_pred EEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC----------------------------------CCeEE
Q 001343 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG----------------------------------DSFLV 567 (1096)
Q Consensus 522 iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~----------------------------------~~~i~ 567 (1096)
+.|.++.+....+.... ....++++|+|+++++++.+... -+.|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999887777766544 45678899999999988753211 12467
Q ss_pred EEeCCC--Cee-eEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCe------------EEEEeecCCCCCC
Q 001343 568 EWNESE--GTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN------------ILTSTDAEGGLPN 631 (1096)
Q Consensus 568 iwd~~~--~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~~~~~~~~~~ 631 (1096)
+.|..+ ++. +..+.... ...++.++|||+++++++ .+.+|.++|+.+.+ ....+.... .
T Consensus 258 VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~---g 332 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL---G 332 (595)
T ss_dssp EEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS---C
T ss_pred EEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC---C
Confidence 777776 444 44444322 344589999999888876 67899999998653 333333221 5
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
...++|+|+|....+...|+.|..||+..
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 78999999995555666799999999876
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.59 E-value=0.0015 Score=82.23 Aligned_cols=226 Identities=12% Similarity=0.063 Sum_probs=126.6
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCC------CcEEEEEEeC-CCcEEE
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN------KLLCVVTCGD-DKLIKV 479 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~------~~~~l~s~s~-d~~i~i 479 (1096)
..|.+.+.+ +.+++.++ ++.+.+++++.++. ..... ..-...|.|+++.+.+ + +++.|.. |++|+|
T Consensus 514 ~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L-~~~~~-~~l~~evscl~i~~~~~~~~~s~--~~aVg~~~d~tv~I 586 (1158)
T 3ei3_A 514 KNISVASCN--SSQVVVAV-GRALYYLQIHPQEL-RQISH-TEMEHEVACLDITPLGDSNGLSP--LCAIGLWTDISARI 586 (1158)
T ss_dssp CCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEE-EEEEE-EECSSCEEEEECCCCSSSTTCCS--EEEEEETTTTEEEE
T ss_pred CEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCce-eeecc-cCCCCceEEEEeecCCCCccccc--EEEEEECCCCEEEE
Confidence 356666654 34676665 67888888876532 21111 1235689999998642 4 7888886 999999
Q ss_pred EE-cCCceEEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC--Ceee--EEeCCCCcEEEEEEcCCCC-E
Q 001343 480 WE-LSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRV--DYDAPGHWCTTMLYSADGS-R 552 (1096)
Q Consensus 480 wd-~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~--~~~~~~~~i~~l~~s~~~~-~ 552 (1096)
++ ...+.+....- ......++.+..-+...+|..|-.||.+..+.++.. ...- .......++.-..+...|. .
T Consensus 587 ~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~ 666 (1158)
T 3ei3_A 587 LKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTN 666 (1158)
T ss_dssp EETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEE
T ss_pred EECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCcee
Confidence 99 55554433221 123456666544334568999999999877766532 2211 1222233444444444443 3
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC--CCEEEEEEcCCeEEEEeCCCCe--EEEEeecCCC
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNVN--ILTSTDAEGG 628 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~ 628 (1096)
+++++ +.-..++... ++....-... ........|+.. .+-++..+ ++.++|..++..+ .+..+....
T Consensus 667 V~a~s-----~rp~liy~~~-~~l~~s~l~~-~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~- 737 (1158)
T 3ei3_A 667 VFACS-----DRPTVIYSSN-HKLVFSNVNL-KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYE- 737 (1158)
T ss_dssp EEEES-----SSCEEEEESS-SSEEEEEBSS-SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSS-
T ss_pred EEEEC-----CCCEEEEEcC-CceEEeccCh-HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCC-
Confidence 44443 3344444433 3332221111 112234456442 24455444 4569998876533 334444432
Q ss_pred CCCccEEEEeCCCCEEEEEECC
Q 001343 629 LPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.+..++++|+.+.++.+..+
T Consensus 738 --Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 738 --SPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp --EEEEEEEEGGGTEEEEEEEE
T ss_pred --CceEEEEcCCCCEEEEEEEe
Confidence 68999999998888777654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-05 Score=96.17 Aligned_cols=284 Identities=13% Similarity=0.092 Sum_probs=173.1
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC-CCE-EEEEEcCCCCEEEEEECCCeEEEEEcc
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISV-SRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~spd~~~l~s~~~dg~i~vwd~~ 436 (1096)
.+++++.++.|.-+|..+|+.+-+.... ... . ...... ..+ ..+++ ++..|++++.|+.|..+|..
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~-------~~~-~--~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~ 135 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPE-------VAK-V--KARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAK 135 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCC-------CCG-G--GGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETT
T ss_pred EEEEECCCCeEEEEECCCChhceEECCC-------CCc-c--ccccccccCCccceEE--ECCEEEEEcCCCEEEEEECC
Confidence 3666778999999999999987442211 000 0 000000 000 01122 35678888899999999999
Q ss_pred CCCccccceeeccc--ccCEEEEEEecCCCcEEEEEEeC------CCcEEEEE-cCCceEEEeeCCC-CC----------
Q 001343 437 GSNDLRQHSQIDAH--VGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWE-LSGRKLFNFEGHE-AP---------- 496 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h--~~~v~~l~~s~d~~~~~l~s~s~------d~~i~iwd-~~~~~~~~~~~~~-~~---------- 496 (1096)
+|+.+-.... ... ...+.+--...++. ++.+.. ++.|..+| .+|+.+..+.... .+
T Consensus 136 tG~~~W~~~~-~~~~~~~~~~~~P~v~~~~---v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~ 211 (668)
T 1kv9_A 136 TGKAIWSQQT-TDPAKPYSITGAPRVVKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELR 211 (668)
T ss_dssp TCCEEEEEEC-SCTTSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred CCCEeeeecc-CCCCCcceecCCCEEECCE---EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccc
Confidence 9987654321 111 01111100111343 444432 58999999 8999988775311 00
Q ss_pred --------------------eEEEEeeecCCCcEEEEEECCCe-------------------EEEEEcCCCCeeeEEeCC
Q 001343 497 --------------------VYSICPHHKENIQFIFSTAIDGK-------------------IKAWLYDTMGSRVDYDAP 537 (1096)
Q Consensus 497 --------------------v~~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~ 537 (1096)
...+++.+ +...++.++.++. |..+|.++++.+..+...
T Consensus 212 ~~~~~~~g~~~w~~~~gg~~w~~~a~d~--~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~ 289 (668)
T 1kv9_A 212 EAAKTWQGDQYWKLGGGGTVWDSMAYDP--ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT 289 (668)
T ss_dssp HHHTTCCSSCHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred cccccCCccceeeeCCCCccccceEEcC--CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC
Confidence 01244543 4467888877663 999999999998877653
Q ss_pred C---------CcEEEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC-----------ccc-------
Q 001343 538 G---------HWCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-----------KKS------- 587 (1096)
Q Consensus 538 ~---------~~i~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-----------~~~------- 587 (1096)
. .+.....+..+|+ .++.+.. ++.++++|..+|+.+....... ..+
T Consensus 290 ~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~ 365 (668)
T 1kv9_A 290 PGDSWDFTATQQITLAELNIDGKPRKVLMQAPK----NGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVR 365 (668)
T ss_dssp TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTT
T ss_pred CCccccccCCCCcEEEEeccCCcEEEEEEEECC----CCEEEEEECCCCCEeccccccccccccccccccCCcccccccc
Confidence 2 1222223334665 4666654 8999999999999885433211 000
Q ss_pred -----------------eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEeC
Q 001343 588 -----------------NGVVQFDTTQNHFLAVG------------------------------------EDSQIKFWDM 614 (1096)
Q Consensus 588 -----------------i~~~~~~~~~~~l~~~~------------------------------------~dg~i~iwd~ 614 (1096)
...++++|+...+++.. .+|.|+.||.
T Consensus 366 ~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~ 445 (668)
T 1kv9_A 366 YEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDP 445 (668)
T ss_dssp CSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEET
T ss_pred ccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeC
Confidence 01256778776666521 2378999999
Q ss_pred CCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccc
Q 001343 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (1096)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 668 (1096)
.+++.+....... ......+...+.++++++.|+.++.||..++ +.+..+
T Consensus 446 ~tG~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG-~~l~~~ 495 (668)
T 1kv9_A 446 VKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKG-EALWQF 495 (668)
T ss_dssp TTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEE
T ss_pred CCCcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcC-hhheEe
Confidence 9999988776543 2334455557889999999999999999999 444333
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.9e-06 Score=85.92 Aligned_cols=209 Identities=12% Similarity=-0.015 Sum_probs=137.0
Q ss_pred CeeeeeecCCCcEEEEec---CCeEEEEEcccceEEEeecCCC-CCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 833 AVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~---dg~v~iwd~~~~~~~~~~~~h~-~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
....++|++|+++.++.+ ++.|.++|+.+++.++++.-.. .....+++.. +++.++.-.++.+.++|..+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~-- 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLS-- 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTE--
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCc--
Confidence 357899999887666554 3689999999999998875322 2233555543 4555566678999999999877
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCC--CCCCceEEEEee
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDA--LSAPISCAVYSC 985 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~i~~l~~s~ 985 (1096)
.+..+..... ....+++||+.|++ ..++.|.++|..+.+.+..+.-... .-..+..+.|.
T Consensus 98 -------------v~~~i~~g~~---~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 98 -------------NIKNFTHQMK---DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp -------------EEEEEECCSS---SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred -------------EEEEEECCCC---CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 1222211001 12346778887777 4578999999999888877763310 01235678887
Q ss_pred CCcEEEEEecCCcEEEEecCCCceeEEEccccccCCC-ccCCCccccceEEEecCCCC-ceEEEEeeCCcEEEEccCCCC
Q 001343 986 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS-VLNGSQTVYPLVVAAHPLEP-NQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 986 dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~s~~l~~s~~d~-~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
+|++.+....++.|.+.|..+++....+......+.. ...+.....+..|+|+| ++ .+++++...+.|++-++...+
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~-~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ-ENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET-TTTEEEEEETTCSEEEEEEEEECC
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC-CCCEEEEECCCCCeEEEEEEeccc
Confidence 7876666667889999999999987777532211000 00011122334799999 65 466677788899999887654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-05 Score=82.37 Aligned_cols=205 Identities=8% Similarity=-0.038 Sum_probs=136.7
Q ss_pred cceEEeecCCCc--eEEEEEcCCCCcEEEEEeC--CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEE
Q 001343 335 RTVAVSLHQGST--VISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1096)
Q Consensus 335 ~~~~~~l~h~~~--V~~v~fsp~g~~llasg~~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1096)
.+++.++.|... ...++|+|+|. ++++.+. ++.|.+.|+.+++.+.... +..+ ....
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------l~~~-~fge 69 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK-----------------MDDS-YFGE 69 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE-----------------CCTT-CCEE
T ss_pred ceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe-----------------cCCC-cceE
Confidence 356777777754 68999999975 5555443 6899999999999876411 1111 1223
Q ss_pred EEEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE
Q 001343 411 RVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1096)
Q Consensus 411 ~l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 488 (1096)
.++++ ++.|..+. .++.+.++|..+.+.+..+. . + ... ...+++||+. ++.+..++.|.++| .+.+.+.
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~-~-g-~~~--g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v~~ 140 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFT-H-Q-MKD--GWGLATDGKI--LYGSDGTSILYEIDPHTFKLIK 140 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEE-C-C-SSS--CCEEEECSSS--EEEECSSSEEEEECTTTCCEEE
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEE-C-C-CCC--eEEEEECCCE--EEEECCCCeEEEEECCCCcEEE
Confidence 45554 55555544 57899999999987776432 1 2 111 2346668884 44445688999999 8888877
Q ss_pred EeeCCC-----CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-------------CCcEEEEEEcCCC
Q 001343 489 NFEGHE-----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADG 550 (1096)
Q Consensus 489 ~~~~~~-----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~~ 550 (1096)
.+.--. ..++.+.+. ++...+....++.|.+.|..+++....+... ......++++|++
T Consensus 141 ~I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~ 217 (266)
T 2iwa_A 141 KHNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN 217 (266)
T ss_dssp EEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred EEEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence 765321 135677765 4555555556889999999999887776542 1356899999999
Q ss_pred CEEEEEeeccCCCCeEEEEeCCC
Q 001343 551 SRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
+.+++++. ....++..++..
T Consensus 218 ~~lfVTgk---~~~~v~~i~l~~ 237 (266)
T 2iwa_A 218 KRIFVTGK---LWPKLFEIKLHL 237 (266)
T ss_dssp TEEEEEET---TCSEEEEEEEEE
T ss_pred CEEEEECC---CCCeEEEEEEec
Confidence 88887764 256777766543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.49 E-value=0.0076 Score=73.72 Aligned_cols=537 Identities=11% Similarity=0.056 Sum_probs=268.5
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...|.++....+|. |-.|+.+ -+..||..+++.... .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 35699998888886 4445554 578999876542210 0112235777754 344 5666
Q ss_pred EECCCeEEEEEccCCCccccceeec-ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC------CC
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH------EA 495 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~------~~ 495 (1096)
|+.+ -+..+|..+++......... -....|.++....++. +. .|+.+ -+..++ .+++ ...+... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lW-igt~~-Gl~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ--IY-VGTYN-GLCRYIPSNGK-FEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC--EE-EEETT-EEEEEETTTTE-EEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC--EE-EEeCC-CHhhCccCCCc-eEEecCCCccccccc
Confidence 6665 67788877654221000000 1234688888887777 33 35544 577888 4443 3332211 12
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
.|.++... .++..|..|+. +-+..+|..+.............|.++....+|...+.. ++-+.+++..+++
T Consensus 192 ~i~~i~~d--~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT------~~Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLED--TTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT------DNGLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEEE--TTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE------TTEEEEECCTTSC
T ss_pred eeEEEEEE--CCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe------CCceeEEecCCCc
Confidence 37777653 34455555654 457778876544322212223458888888888766543 3458888887665
Q ss_pred eeEEEcC------cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee---cCCCCCCccEEEEeCCCCEEEE
Q 001343 576 IKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD---AEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 576 ~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
....... .....|.++....+|. |..|+..| +.++.....-...... .......|.++.-..+|.+.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG 340 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG 340 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe
Confidence 4332211 1223577777777665 55666666 5554432211111111 0111225778887777776654
Q ss_pred EECCCcEEEEEcCCCcc-ccccccC--CCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccC
Q 001343 647 TTADNGFKILANAIGLR-SLRAVEN--PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSR 723 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~~~-~~~~~~~--~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 723 (1096)
+.+| +..++..++.. ....+.. .........|.++.-..+|..-+++
T Consensus 341 -t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt---------------------------- 390 (758)
T 3ott_A 341 -GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT---------------------------- 390 (758)
T ss_dssp -ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE----------------------------
T ss_pred -eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe----------------------------
Confidence 4554 55565543211 1111110 0011112234445444444433222
Q ss_pred CCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCC--CCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCC
Q 001343 724 SMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPEST--DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS 801 (1096)
Q Consensus 724 ~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~ 801 (1096)
++-+..++.. ++.+..+...... .....|.++...++|. |-.++..+-+..++.........
T Consensus 391 -----------~~GL~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~ 454 (758)
T 3ott_A 391 -----------DGSINRYDYA----TRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTS 454 (758)
T ss_dssp -----------TTEEEEEETT----TTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCS
T ss_pred -----------CCcHhhcCcC----CCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCC
Confidence 1334444433 2333332211100 0234688888878886 55555555566666421000000
Q ss_pred CceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEE-EecCCeEEEEEcccceEEEeecC---CCCCeeE
Q 001343 802 GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM-SATGGKISLFNMMTFKVMTTFMS---PPPASTF 877 (1096)
Q Consensus 802 g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la-~~~dg~v~iwd~~~~~~~~~~~~---h~~~i~~ 877 (1096)
+.... ...+.. ...+ ....|.++...++|++-+ .+..+.|..+|..+++....... ....+.+
T Consensus 455 ~~~~~---~~~~~~------~~~l----~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~ 521 (758)
T 3ott_A 455 GQYIA---EQNYSV------HNGL----SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNY 521 (758)
T ss_dssp SEEEC---SEEECG------GGTC----SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEE
T ss_pred cceec---cccccc------cccc----ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccce
Confidence 00000 000000 0011 234588999999998776 34556688899877655432211 1235777
Q ss_pred EEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEE
Q 001343 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIY 957 (1096)
Q Consensus 878 l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iw 957 (1096)
+.... +|++.+ |+..| +..++..++... ... ..+-....|.++... +|...+++ ++.|..+
T Consensus 522 i~~d~-~g~lWi-gt~~G-l~~~~~~~~~~~-------------~~~-~~gl~~~~i~~i~~~-~g~lWi~t-~~Gl~~~ 582 (758)
T 3ott_A 522 LLCDE-DGLLWV-GFHGG-VMRINPKDESQQ-------------SIS-FGSFSNNEILSMTCV-KNSIWVST-TNGLWII 582 (758)
T ss_dssp EEECT-TSCEEE-EETTE-EEEECC--CCCC-------------BCC-CCC---CCEEEEEEE-TTEEEEEE-SSCEEEE
T ss_pred EEECC-CCCEEE-EecCc-eEEEecCCCceE-------------Eec-ccCCCccceEEEEEC-CCCEEEEC-CCCeEEE
Confidence 87777 676554 45555 777777665400 000 011111256777664 66655544 5568888
Q ss_pred EcccceeccccccCCCCCCCceEEEEe-eCCcEEEEEecCCcEEEEecC
Q 001343 958 DASKMERIRQWTPQDALSAPISCAVYS-CNSQLVFATFCDGNIGVFDAD 1005 (1096)
Q Consensus 958 d~~~~~~~~~~~~~~~~~~~i~~l~~s-~dg~~la~~~~dg~i~vwd~~ 1005 (1096)
|..+.+...--.+ ...+....+. ++|.+++ |+.+|-+ .++.+
T Consensus 583 ~~~~~~~~~~~~~----~~~~~~~~~~~~~G~l~f-G~~~Gl~-~f~p~ 625 (758)
T 3ott_A 583 DRKTMDARQQNMT----NKRFTSLLFDPKEDCVYL-GGADGFG-ISHSN 625 (758)
T ss_dssp ETTTCCEEEC--C----CCCCSEEEEETTTTEEEE-ECBSEEE-EEEC-
T ss_pred cCCCceeEEecCC----CCceeeeEEECCCCcEEE-ecCCceE-EEChh
Confidence 9887664321111 2233444443 4666555 7777754 45544
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=0.0001 Score=85.95 Aligned_cols=112 Identities=8% Similarity=-0.015 Sum_probs=73.0
Q ss_pred cEEEEEEC-CCeEEEEEc-CCCCeeeEEeCCCCc-----------EEEEEEcCCCCE----EEEEeeccCCCCeEEEEeC
Q 001343 509 QFIFSTAI-DGKIKAWLY-DTMGSRVDYDAPGHW-----------CTTMLYSADGSR----LFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 509 ~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------i~~l~~s~~~~~----l~~~~~~~~~~~~i~iwd~ 571 (1096)
..+++++. ++.|..+|. .+++.+..+...... ...++++|.+.. +++++. ++.|+.+|.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----dg~l~AlDa 138 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----DGNVAALNA 138 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT----TSEEEEEET
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC----CCEEEEEEC
Confidence 36667776 888888998 888888776554321 123455443433 666654 889999999
Q ss_pred CCCeeeEEEcCcCcc---ceE-EEEEeCCCCEEEEEE------cCCeEEEEeCCCCeEEEEeecC
Q 001343 572 SEGTIKRTYAGFRKK---SNG-VVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~---~i~-~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
.+|+.+-........ .+. .-.+. +..+++++ .+|.|+.+|..+|+.+..+...
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred CCCCEEEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 999988776543210 111 11111 34566655 3799999999999998877643
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.49 E-value=0.0077 Score=73.68 Aligned_cols=538 Identities=11% Similarity=0.086 Sum_probs=273.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...|.|+.-..+|. +=.|+.+| +..||-.+-+... .. -......|.++.-..+| .|.+
T Consensus 21 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~~~--------~~----------~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQHF--------TY----------GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSC--EEEEESSC-EEEECSSCEEECS--------CT----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCC--EEEEECCC-ccccCCCceEEEE--------cc----------CCCCCceEEEEEEcCCC-cEEE
Confidence 45799999999997 33455666 5566632211000 00 01124569998887776 5555
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee-----CCCCCe
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-----GHEAPV 497 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-----~~~~~v 497 (1096)
|+.+| +..||..+.+.... .......|.++.. .++. |..++.+ -+..+| .+++ +..+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~~---~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~-~~~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQP---ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRK-LTSFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECCC---SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCC-EEEECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEECc---ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCe-EEEeccCCCCcCCCeE
Confidence 66655 77899876532211 1112345777754 3553 4445555 678889 4444 33331 123457
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC------CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.++.. +.++. |..|+.+| +..++..+..... +... ...|.++...+++..|..++ ++-+..+|.
T Consensus 149 ~~i~~--d~~g~-lWigt~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-----~~Gl~~~~~ 218 (758)
T 3ott_A 149 YSIIR--TKDNQ-IYVGTYNG-LCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-----EGYLFQYFP 218 (758)
T ss_dssp EEEEE--CTTCC-EEEEETTE-EEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEE-----EEEEEEEET
T ss_pred EEEEE--cCCCC-EEEEeCCC-HhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEE-----CCCCeEEcC
Confidence 77765 33444 44455554 6667765543221 1111 22488888887777666555 235888898
Q ss_pred CCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC-----CCCCccEEEEeCCCCEEEE
Q 001343 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-----GLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~ 646 (1096)
.+++.... .......|.++....+|.. ..|+. +-+.+++..++.......... ....|.++....+|.+.+
T Consensus 219 ~~~~~~~~-~~l~~~~i~~i~~d~~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi- 294 (758)
T 3ott_A 219 STGQIKQT-EAFHNNSIKSLALDGNGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL- 294 (758)
T ss_dssp TTTEEEEE-EEEEEEEEEEEEECTTCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-
T ss_pred CCCeEEec-cCCCCCeEEEEEEcCCCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-
Confidence 77654332 2112225777777777654 44554 468889887765433221110 122578888877776554
Q ss_pred EECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCC
Q 001343 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD 726 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 726 (1096)
|+..| +.++......+... ............|.++....+|..-+.+. .+...
T Consensus 295 GT~~G-l~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~D~~g~lWiGt~-~Gl~~------------------------ 347 (758)
T 3ott_A 295 GTDYG-ISLSRYNSALQFIP-ISQITGTGDGNQFYSLFRDSKGFYWFGGA-NGLIR------------------------ 347 (758)
T ss_dssp EESSS-EEEECCCC-CEEEE-HHHHSCSCCCCBEEEEEECTTCCEEEEET-TEEEE------------------------
T ss_pred EeCCc-ccccccCCceeEEe-cccCCCCCCCceEEEEEEcCCCCEEEeeC-Cccee------------------------
Confidence 44556 54443221111110 00000001112355566666666554432 12111
Q ss_pred CCccccCCCCCccceeeeeeecCCceEEEEcCC--CCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCce
Q 001343 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE--STDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA 804 (1096)
Q Consensus 727 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~ 804 (1096)
++.... .......+.... .......|.++.-..+|...+ ++ ++-+..|+.....+
T Consensus 348 --------------~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~------ 404 (758)
T 3ott_A 348 --------------FTDPAG-ERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQF------ 404 (758)
T ss_dssp --------------ESCTTS-SCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEE------
T ss_pred --------------eccccc-ccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcE------
Confidence 111000 000011111000 001234688888888887444 44 44677776532111
Q ss_pred eeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccc-----eEE---Eeec---C-CC
Q 001343 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-----KVM---TTFM---S-PP 872 (1096)
Q Consensus 805 ~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~-----~~~---~~~~---~-h~ 872 (1096)
..+....... .+ ....|.++...++|++.+....+.|.++|..+. ... ..+. + ..
T Consensus 405 ------~~~~~~~~~~---~~----~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (758)
T 3ott_A 405 ------IHYNIVDNTG---TY----NTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSG 471 (758)
T ss_dssp ------EEEEEECCC-----C----BSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSC
T ss_pred ------EEeecCCCcC---CC----CCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccccc
Confidence 0010000000 00 234688888888887766444567888886431 111 1111 1 22
Q ss_pred CCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCC-CCCCceEEEecCCcEEEEEec
Q 001343 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLVVHE 951 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~v~~v~fs~dg~~l~~~~d 951 (1096)
..|.++...+ ++++.+.++..+-|..+|..+++... +. ..+.. ...+.++....+|...+.+.
T Consensus 472 ~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~-------------~~-~~~~~~~~~~~~i~~d~~g~lWigt~- 535 (758)
T 3ott_A 472 MFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTK-------------LF-ADELTGEKSPNYLLCDEDGLLWVGFH- 535 (758)
T ss_dssp SCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEE-------------EC-TTTSCGGGCEEEEEECTTSCEEEEET-
T ss_pred ceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEE-------------ec-CCCcCCCcccceEEECCCCCEEEEec-
Confidence 3588898888 78776633333447778877665110 10 00000 01566777778887776654
Q ss_pred ceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCcee
Q 001343 952 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLR 1010 (1096)
Q Consensus 952 ~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~ 1010 (1096)
+.|..|+..+++....-..+- -...|.++.. .+|.+.+ ++.+| +..+|..+.+..
T Consensus 536 ~Gl~~~~~~~~~~~~~~~~gl-~~~~i~~i~~-~~g~lWi-~t~~G-l~~~~~~~~~~~ 590 (758)
T 3ott_A 536 GGVMRINPKDESQQSISFGSF-SNNEILSMTC-VKNSIWV-STTNG-LWIIDRKTMDAR 590 (758)
T ss_dssp TEEEEECC--CCCCBCCCCC----CCEEEEEE-ETTEEEE-EESSC-EEEEETTTCCEE
T ss_pred CceEEEecCCCceEEecccCC-CccceEEEEE-CCCCEEE-ECCCC-eEEEcCCCceeE
Confidence 568888887665322111110 0456777775 4665554 55555 777898877643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00015 Score=84.84 Aligned_cols=172 Identities=6% Similarity=-0.027 Sum_probs=108.4
Q ss_pred eeeecCCCcEEEEec-C----------------CeEEEEEcccceEEEeecC--CC--------CCeeEEEEecCCC---
Q 001343 836 CIALSKNDSYVMSAT-G----------------GKISLFNMMTFKVMTTFMS--PP--------PASTFLAFHPQDN--- 885 (1096)
Q Consensus 836 ~l~~s~dg~~la~~~-d----------------g~v~iwd~~~~~~~~~~~~--h~--------~~i~~l~~s~~d~--- 885 (1096)
.+++.++...+..+. + +.|..+|..+|+.+..++. |. .++ -+.... ++
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~-~G~~~ 316 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPV-NGKMT 316 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEE-TTEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEeccc-CCcEE
Confidence 456666655555544 1 3599999999998877652 21 111 123334 56
Q ss_pred cEEEEeeCCCeEEEEeeccceeeeeecccccc---------ccceeeec--------------CCCCCC-CCCceEEEec
Q 001343 886 NIIAIGTEDSTIHIYNVRVDELCVWSIDTWEK---------RKSVTIHI--------------PAGKTP-TGDTRVQFNA 941 (1096)
Q Consensus 886 ~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~---------~~~~~~~~--------------~~~~~~-~~v~~v~fs~ 941 (1096)
+.++.++.+|.+.++|..+++ .+|....... ...+++.. ..+... ..-..++|+|
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~-~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 395 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGN-LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP 395 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCC-EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEeCCCcEEEEEECCCCC-EEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC
Confidence 367889999999999999998 6776543210 11111110 000000 1124678898
Q ss_pred CCcEEEE-Ee-------------------------------------cceEEEEEcccceeccccccCCCCCCCceEEEE
Q 001343 942 DQVRMLV-VH-------------------------------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVY 983 (1096)
Q Consensus 942 dg~~l~~-~~-------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~ 983 (1096)
+...+++ .. ++.|..||+.+|+.+-+.... ..+.+..+
T Consensus 396 ~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~ 471 (571)
T 2ad6_A 396 ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTL 471 (571)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCE
T ss_pred CCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC----CCccceeE
Confidence 8877776 32 368999999999876555432 22333334
Q ss_pred eeCCcEEEEEecCCcEEEEecCCCceeEEEc
Q 001343 984 SCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 984 s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~ 1014 (1096)
...+.++++++.||.|++||..+|+.+..+.
T Consensus 472 ~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 472 YTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 4556777789999999999999999877655
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-05 Score=80.03 Aligned_cols=190 Identities=9% Similarity=0.016 Sum_probs=127.6
Q ss_pred ceEEeecCCCc--eEEEEEcCCCCcEEEEEeCCC--eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEE
Q 001343 336 TVAVSLHQGST--VISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1096)
Q Consensus 336 ~~~~~l~h~~~--V~~v~fsp~g~~llasg~~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1096)
+++.++.|... ...+.|+ ++. ++.+.+.+| .|+++|+.+++.+.+.. + ......
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~-----------------l---~~~~Fg 89 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIE-----------------L---GKRYFG 89 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEE-----------------C---CTTCCE
T ss_pred EEEEEecCCCCcccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEe-----------------c---CCccce
Confidence 45666777654 4899999 665 677777766 99999999999886421 1 112223
Q ss_pred EEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE
Q 001343 412 VAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 412 l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 489 (1096)
....++++.|.... .++.+.+||.++.+.+..+. ..+ ....+++|++ .|+.+..++.|.++| .+.+.+.+
T Consensus 90 eGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~-~~~-----eG~glt~dg~--~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 90 EGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN-YDG-----EGWGLTHNDQ--YLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE-CSS-----CCCCEEECSS--CEEECCSSSEEEEECTTTCSEEEE
T ss_pred eEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE-CCC-----CceEEecCCC--EEEEECCCCeEEEEcCCCCeEEEE
Confidence 22333455555554 57899999999988777432 222 2233446777 455555578899999 88888877
Q ss_pred eeCC--C---CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC------------CCcEEEEEEcCCCCE
Q 001343 490 FEGH--E---APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------GHWCTTMLYSADGSR 552 (1096)
Q Consensus 490 ~~~~--~---~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~i~~l~~s~~~~~ 552 (1096)
+.-. . ..++.+.+. +|...+..-.+..|.+.|..+++....+... ....+.++++|+++.
T Consensus 162 I~V~~~g~~~~~lNELe~~---~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~ 238 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWV---DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR 238 (262)
T ss_dssp EECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred EEeccCCccccccceeEEE---CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence 6542 1 234556664 5555555556889999999999888766543 235689999999998
Q ss_pred EEEEee
Q 001343 553 LFSCGT 558 (1096)
Q Consensus 553 l~~~~~ 558 (1096)
|++.+.
T Consensus 239 lfVTGK 244 (262)
T 3nol_A 239 LFVTGK 244 (262)
T ss_dssp EEEEET
T ss_pred EEEECC
Confidence 888874
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=3.3e-05 Score=92.50 Aligned_cols=262 Identities=8% Similarity=0.029 Sum_probs=162.4
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC------CCeEEE
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT------KHLIQL 432 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~------dg~i~v 432 (1096)
.+++++.|+.|..+|..+|+.+-+ ........ .......++. .+..++++.. +|.|..
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~-------~~~~~~~~---~~~~~~~P~v------~~~~v~vg~~~~~~~~~g~v~a 182 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWS-------QQTTDPAK---PYSITGAPRV------VKGKVIIGNGGAEYGVRGFVSA 182 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEE-------EECSCTTS---SCBCCSCCEE------ETTEEEECCBCTTTCCBCEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeee-------eccCCCCC---cceecCCCEE------ECCEEEEeCCCCCcCCCCEEEE
Confidence 467788899999999999998743 11100000 0000111211 1334544432 589999
Q ss_pred EEccCCCccccceeecc----------------------------cccCEEEEEEecCCCcEEEEEEeCCC---------
Q 001343 433 YSYAGSNDLRQHSQIDA----------------------------HVGAVNDLAFAYPNKLLCVVTCGDDK--------- 475 (1096)
Q Consensus 433 wd~~~~~~~~~~~~l~~----------------------------h~~~v~~l~~s~d~~~~~l~s~s~d~--------- 475 (1096)
+|..+|+.+-......+ +......+++.++.. .++.++.++
T Consensus 183 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~--~vy~~~~~g~~w~~~~~~ 260 (668)
T 1kv9_A 183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD--LLYVGTGNGSPWNREVRS 260 (668)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT--EEEEECCCEESSCHHHHS
T ss_pred EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC--EEEEeCCCCCccccCCCC
Confidence 99999987654321111 111123478888877 677777665
Q ss_pred ----------cEEEEE-cCCceEEEeeC--CC-------CCeEEEEeeecCCCc---EEEEEECCCeEEEEEcCCCCeee
Q 001343 476 ----------LIKVWE-LSGRKLFNFEG--HE-------APVYSICPHHKENIQ---FIFSTAIDGKIKAWLYDTMGSRV 532 (1096)
Q Consensus 476 ----------~i~iwd-~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~ 532 (1096)
.|..+| .+|+.+..++. |. .+.....+.. +|+ .++.++.+|.+.++|..+++.+.
T Consensus 261 ~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--DGKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc--CCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 499999 99999888764 22 2222222222 343 68899999999999999988774
Q ss_pred EEeCCC------------CcE------------------------EEEEEcCCCCEEEEEeec-----------------
Q 001343 533 DYDAPG------------HWC------------------------TTMLYSADGSRLFSCGTS----------------- 559 (1096)
Q Consensus 533 ~~~~~~------------~~i------------------------~~l~~s~~~~~l~~~~~~----------------- 559 (1096)
...... .++ ..++++|+...+++....
T Consensus 339 ~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~ 418 (668)
T 1kv9_A 339 AEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKA 418 (668)
T ss_dssp EEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSS
T ss_pred cccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccc
Confidence 332211 001 126778877776653210
Q ss_pred ---------------cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 560 ---------------KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 560 ---------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
...++.|..||+.+++.+-....... .....+...+..+++++.|+.++.||.++++.+..+.
T Consensus 419 ~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~--~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 419 FNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH--WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp CCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS--CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC--CcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 01137899999999999877664332 2223344567889999999999999999999998887
Q ss_pred cCCCCCCccEEEEeCCCCE
Q 001343 625 AEGGLPNLPRLRFSKEGNL 643 (1096)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~ 643 (1096)
..... ...-+.+..+|+.
T Consensus 497 ~~~~~-~~~p~~~~~~G~~ 514 (668)
T 1kv9_A 497 AQSGI-VAAPMTFELAGRQ 514 (668)
T ss_dssp CSSCC-CSCCEEEEETTEE
T ss_pred CCCCc-ccCceEEEECCEE
Confidence 65432 2234555556653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.6e-05 Score=87.02 Aligned_cols=308 Identities=12% Similarity=0.038 Sum_probs=177.1
Q ss_pred EEEEeC-CCeEEEEec-CCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE----EEEEECCCeEEEE
Q 001343 360 LLVGSS-NGEITLWEL-AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY----VGVAFTKHLIQLY 433 (1096)
Q Consensus 360 lasg~~-dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~----l~s~~~dg~i~vw 433 (1096)
+.+++. ++.|.-+|. .+|+.+-+..... ..........+ .....++++|.+.. |++++.|+.|.-+
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~-------~~~~~~~~~~~-~~~~g~av~p~~g~~~~rV~v~t~dg~l~Al 136 (599)
T 1w6s_A 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQ-------NPAARAVACCD-LVNRGLAYWPGDGKTPALILKTQLDGNVAAL 136 (599)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCC-------CGGGGGGCSSC-SCCCCCEEECCCSSSCCEEEEECTTSEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCCcEEEEECCCC-------Ccccccccccc-ccccceEEEecCCcceeEEEEEcCCCEEEEE
Confidence 555666 889999999 8998774422110 00000000000 00112445444444 7888889999999
Q ss_pred EccCCCccccceeecccc--cCEEE-EEEecCCCcEEEEEEe------CCCcEEEEE-cCCceEEEeeCCCCC-------
Q 001343 434 SYAGSNDLRQHSQIDAHV--GAVND-LAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFNFEGHEAP------- 496 (1096)
Q Consensus 434 d~~~~~~~~~~~~l~~h~--~~v~~-l~~s~d~~~~~l~s~s------~d~~i~iwd-~~~~~~~~~~~~~~~------- 496 (1096)
|..+|+.+-... +..+. ..+.+ ... .++. ++.++ .++.|+.+| .+|+.+..+......
T Consensus 137 Da~TG~~~W~~~-~~~~~~~~~~~ssP~v-~~g~---V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p 211 (599)
T 1w6s_A 137 NAETGETVWKVE-NSDIKVGSTLTIAPYV-VKDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLAS 211 (599)
T ss_dssp ETTTCCEEEEEE-CCCGGGTCBCCSCCEE-ETTE---EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred ECCCCCEEEeec-CCCCCccceeecCCEE-ECCE---EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccc
Confidence 999998764321 21111 01111 111 2443 44444 389999999 899998776532211
Q ss_pred ------------------------------eE-EEEeeecCCCcEEEEEECC----------------CeEEEEEcCCCC
Q 001343 497 ------------------------------VY-SICPHHKENIQFIFSTAID----------------GKIKAWLYDTMG 529 (1096)
Q Consensus 497 ------------------------------v~-~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~ 529 (1096)
++ .+++.+ +..+++.+..+ +.|..+|.++++
T Consensus 212 ~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~--~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~ 289 (599)
T 1w6s_A 212 DFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP--GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE 289 (599)
T ss_dssp TTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred ccccccccccccccccccCCCcceecCCCccccceeEeC--CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence 00 122322 34567776655 489999999999
Q ss_pred eeeEEeCCCCc---------EEEEEEc-CCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC------------
Q 001343 530 SRVDYDAPGHW---------CTTMLYS-ADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------------ 584 (1096)
Q Consensus 530 ~~~~~~~~~~~---------i~~l~~s-~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------------ 584 (1096)
.+..+....+. ..-+... .+|+ .++.++. ++.++++|..+|+.+.......
T Consensus 290 ~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~ 365 (599)
T 1w6s_A 290 AKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDR----NGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKT 365 (599)
T ss_dssp EEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECT----TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTT
T ss_pred eeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECC----CcEEEEEECCCCCEeecccccCCcccccccccCC
Confidence 88877654321 1112222 5673 4555554 8999999999999887654211
Q ss_pred ccce--------------------------EEEEEeCCCCEEEEEE----------------------------------
Q 001343 585 KKSN--------------------------GVVQFDTTQNHFLAVG---------------------------------- 604 (1096)
Q Consensus 585 ~~~i--------------------------~~~~~~~~~~~l~~~~---------------------------------- 604 (1096)
..++ ..++++|+...+++..
T Consensus 366 g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~ 445 (599)
T 1w6s_A 366 GQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGD 445 (599)
T ss_dssp CCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSB
T ss_pred CceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCC
Confidence 0011 1356677666655421
Q ss_pred -----cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCc
Q 001343 605 -----EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1096)
Q Consensus 605 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1096)
..|.|..||+.+++.+....... ....-.....+.+++.++.|+.++.||..++. .+-.++.... ..
T Consensus 446 ~~~~~~~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~-~lW~~~l~~g-~~--- 517 (599)
T 1w6s_A 446 RQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGD-LLWKFKIPSG-AI--- 517 (599)
T ss_dssp TTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSC-CC---
T ss_pred cccCCCcCeEEEEECCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCC-EEEEeeCCCC-cE---
Confidence 34789999999999888775432 12221223356788889999999999999994 3333332211 11
Q ss_pred ceeEEeecCCCeEEe
Q 001343 680 IESVALKVSASSAVS 694 (1096)
Q Consensus 680 v~~~~~s~~g~~lv~ 694 (1096)
..-+.+..+|+..++
T Consensus 518 ~~P~~y~~~G~qyv~ 532 (599)
T 1w6s_A 518 GYPMTYTHKGTQYVA 532 (599)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred eccEEEEeCCEEEEE
Confidence 122556677775533
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-05 Score=78.25 Aligned_cols=184 Identities=15% Similarity=0.094 Sum_probs=127.8
Q ss_pred EEEEEEecCCCcEEEEEEeCCC--cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe
Q 001343 454 VNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS 530 (1096)
Q Consensus 454 v~~l~~s~d~~~~~l~s~s~d~--~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 530 (1096)
...+.|+ ++. +.++.+.+| .|+++| .+|+.+..+.... ......+.+.++ .+.+..-.++.+.+||..+.+.
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~-~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKD-KIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETT-EEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCC-EEEEEEeeCCEEEEEECccCcE
Confidence 4788998 565 677777766 999999 9999988876433 333322223332 4444555689999999999999
Q ss_pred eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC-c---cceEEEEEeCCCCEEEEEEcC
Q 001343 531 RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-K---KSNGVVQFDTTQNHFLAVGED 606 (1096)
Q Consensus 531 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~---~~i~~~~~~~~~~~l~~~~~d 606 (1096)
+..+...... ..+++|++.|+... +...|.++|..+.+.+.++.... + ..++.+.+. +|..++..-.+
T Consensus 120 ~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 120 VRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp EEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred EEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 8887764421 23336777777653 27789999999999988876532 1 123446665 56544444468
Q ss_pred CeEEEEeCCCCeEEEEeecCCC----------CCCccEEEEeCCCCEEEEEECC
Q 001343 607 SQIKFWDMDNVNILTSTDAEGG----------LPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
+.|.+.|..+++.+..+....- ....+.|+|+|+++.|++.+..
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 8999999999999998876421 1245899999998888877754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-05 Score=93.70 Aligned_cols=245 Identities=9% Similarity=0.007 Sum_probs=131.4
Q ss_pred ceEEEEEc-CCCCcEEEEEeCCC----eEEEEecCCC-CeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 346 TVISMDFH-PSHQTLLLVGSSNG----EITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 346 ~V~~v~fs-p~g~~llasg~~dg----~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
.+...+|| |||++++.+.+.+| .|+++|+.++ +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 68899999 99995444444443 5999999988 63211 0 11 1134689999999
Q ss_pred EEEEEECC-----CeEEEEEccCCCccccceeec-ccccCEEEEEEecCCCcEEEEEEe---CCCcEEEEE-cCC--ce-
Q 001343 420 YVGVAFTK-----HLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE-LSG--RK- 486 (1096)
Q Consensus 420 ~l~s~~~d-----g~i~vwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s---~d~~i~iwd-~~~--~~- 486 (1096)
.|+....+ ..|.++++.++...... .+. ........+.|+|||+. |+..+ ....|+++| .++ ..
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNT--LCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSE--EEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCE--EEEEecCCCCceEEEEECCCCCCCce
Confidence 88877665 36888888776432111 122 23345678899999995 44333 234678888 444 22
Q ss_pred EEEe-eCCCCCeEEEEeeecCCCcEEEEEECC--C--eEEEEEcCCCCeeeE-EeCCCC--cEEEEEEcCCCCEEEEEee
Q 001343 487 LFNF-EGHEAPVYSICPHHKENIQFIFSTAID--G--KIKAWLYDTMGSRVD-YDAPGH--WCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 487 ~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~iwd~~~~~~~~~-~~~~~~--~i~~l~~s~~~~~l~~~~~ 558 (1096)
+..+ ........++.|+. ++.+++....+ + .|..+++.+...... +..+.. .+..+.+. +..|+....
T Consensus 311 ~~~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~ 386 (751)
T 2xe4_A 311 LEIVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR 386 (751)
T ss_dssp EEESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE
T ss_pred eEEeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE
Confidence 1333 33445556665432 33344444443 2 566666654222222 222333 34555554 556655443
Q ss_pred ccCCCCeEEEEeC-------CCCeeeEEEcCcCccceEEEEE----eCCCC-EEEEEEcC---CeEEEEeCCCCeE
Q 001343 559 SKDGDSFLVEWNE-------SEGTIKRTYAGFRKKSNGVVQF----DTTQN-HFLAVGED---SQIKFWDMDNVNI 619 (1096)
Q Consensus 559 ~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~i~~~~~----~~~~~-~l~~~~~d---g~i~iwd~~~~~~ 619 (1096)
.++...|+++++ .+++..+.+.......+..+.+ ++++. .+++.+.. +.++.+|+.+++.
T Consensus 387 -~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 387 -RAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp -ETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred -eCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 223446777775 3443133333221111222222 34554 44443322 4678888877654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.3e-06 Score=83.46 Aligned_cols=191 Identities=9% Similarity=0.014 Sum_probs=119.8
Q ss_pred CCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCee--EEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 832 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAST--FLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~--~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
.-...+.|+. +++..+.+ +|.|+++|+.+++.++++ -. .... .+++.. +++.+..-.++.+.+||..+.+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g--~~Ly~ltw~~~~v~V~D~~Tl~-- 127 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG--ERLYQLTWTEGLLFTWSGMPPQ-- 127 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS--SCEEEEESSSCEEEEEETTTTE--
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC--CEEEEEEccCCEEEEEECCcCc--
Confidence 3346788873 55555555 689999999999998887 22 2333 355543 4555556678999999999887
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCC-C-CCCCceEEEEee
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQD-A-LSAPISCAVYSC 985 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~-~-~~~~i~~l~~s~ 985 (1096)
.+..+.-.. . ...+.+|++.|+. ..++.|.++|..+.+.+..+.-.. + --..+..+.|.
T Consensus 128 -------------~~~ti~~~~--e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 128 -------------RERTTRYSG--E--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp -------------EEEEEECSS--C--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred -------------EEEEEeCCC--c--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-
Confidence 122221111 1 1233467887777 348899999999998887765321 0 01234566766
Q ss_pred CCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCc--cCCCccccceEEEecCCCCceEEEE
Q 001343 986 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSV--LNGSQTVYPLVVAAHPLEPNQFAIG 1048 (1096)
Q Consensus 986 dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~s~~l~~s~~d~~~l~s~ 1048 (1096)
+|++.+....+..|.+.|..+|++...+......+... ......|.- .|+|+|..+++++||
T Consensus 190 dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN-GIA~dp~~~rlfVTG 253 (268)
T 3nok_A 190 NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN-GIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE-EEEECTTTCCEEEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE-EEEEcCCCCEEEEeC
Confidence 88777666678899999999999888776543221110 001222333 799999334445544
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=7.7e-05 Score=87.23 Aligned_cols=305 Identities=12% Similarity=0.035 Sum_probs=177.3
Q ss_pred EEEEeC-CCeEEEEec-CCCCeeecccceeecccccCccccccccc--cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEc
Q 001343 360 LLVGSS-NGEITLWEL-AMRDRLVSKPFKIWDMAACSLPFQASIFK--DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSY 435 (1096)
Q Consensus 360 lasg~~-dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~ 435 (1096)
+.+++. ++.|.-+|. .+|+.+-+.... .......... .-... ++. ++..|++++.|+.+..+|.
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~~W~~~~~-------~~~~~~~~~~~~~~~~~---~~~--~~~~v~v~~~dg~l~alD~ 132 (571)
T 2ad6_A 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPK-------QDASTKAVMCCDVVDRG---LAY--GAGQIVKKQANGHLLALDA 132 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCC-------CCGGGGGGCTTCSCCCC---CEE--ETTEEEEECTTSEEEEEET
T ss_pred EEEEeCCCCEEEEEeCCCCccEEEEEcCC-------CCccccccccccccccc---cEE--ECCEEEEEeCCCEEEEEEC
Confidence 555566 889999999 899876432111 0000000000 00011 122 3567888888999999999
Q ss_pred cCCCccccceeeccccc--CEEE-EEEecCCCcEEEEEEeC------CCcEEEEE-cCCceEEEeeCCCCC---------
Q 001343 436 AGSNDLRQHSQIDAHVG--AVND-LAFAYPNKLLCVVTCGD------DKLIKVWE-LSGRKLFNFEGHEAP--------- 496 (1096)
Q Consensus 436 ~~~~~~~~~~~l~~h~~--~v~~-l~~s~d~~~~~l~s~s~------d~~i~iwd-~~~~~~~~~~~~~~~--------- 496 (1096)
.+|+.+-... +..+.. .+.+ ... .++ .++.++. ++.|..+| .+|+.+.++......
T Consensus 133 ~tG~~~W~~~-~~~~~~~~~~~~~P~v-~~g---~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~ 207 (571)
T 2ad6_A 133 KTGKINWEVE-VCDPKVGSTLTQAPFV-AKD---TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDF 207 (571)
T ss_dssp TTCCEEEEEE-CCCGGGTCBCCSCCEE-ETT---EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred CCCCEEEEec-CCCCCccceeccCCEE-ECC---EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccc
Confidence 9998765322 222111 1211 111 134 3455544 79999999 899998776532211
Q ss_pred ----------------------------e-EEEEeeecCCCcEEEEEECC----------------CeEEEEEcCCCCee
Q 001343 497 ----------------------------V-YSICPHHKENIQFIFSTAID----------------GKIKAWLYDTMGSR 531 (1096)
Q Consensus 497 ----------------------------v-~~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~ 531 (1096)
+ ..+++.+ +...++.+..+ +.|..+|.++++.+
T Consensus 208 ~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~--~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~ 285 (571)
T 2ad6_A 208 NSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP--KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK 285 (571)
T ss_dssp TTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE
T ss_pred ccccccccccccccccCcccceecCCCCeeeeEEEcC--CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEE
Confidence 0 1133332 33456555532 36999999999988
Q ss_pred eEEeCCCC---------cEEEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC------------ccc
Q 001343 532 VDYDAPGH---------WCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------------KKS 587 (1096)
Q Consensus 532 ~~~~~~~~---------~i~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~ 587 (1096)
..+....+ ...-+....+|+ .++.+.. ++.++++|..+|+.+..+.... ..+
T Consensus 286 W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p 361 (571)
T 2ad6_A 286 WGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDR----NGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTP 361 (571)
T ss_dssp EEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECT----TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSE
T ss_pred EEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCC----CcEEEEEECCCCCEEeeecccCCccccccccccCCce
Confidence 87764321 111122224674 4455544 8899999999999887664321 001
Q ss_pred e--------------------------EEEEEeCCCCEEEEEE-------------------------------------
Q 001343 588 N--------------------------GVVQFDTTQNHFLAVG------------------------------------- 604 (1096)
Q Consensus 588 i--------------------------~~~~~~~~~~~l~~~~------------------------------------- 604 (1096)
+ ..++++|+...+++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~ 441 (571)
T 2ad6_A 362 VRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKK 441 (571)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSC
T ss_pred ecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCC
Confidence 1 2356788877777654
Q ss_pred cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEE
Q 001343 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1096)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1096)
.+|.|+.||..+++.+....... .+....+...+..+++++.|+.|+.||..+++ .+..+..... ... ..+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~-~lw~~~~~~~-~~~---~p~~ 513 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGK-ELWNFKMPSG-GIG---SPMT 513 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSC-CCS---CCEE
T ss_pred CCCeEEEEECCCCCEEEEecCCC---CccceeEEECCCEEEEEcCCCeEEEEECCCCC-EEEEEeCCCC-cEe---eeEE
Confidence 24789999999999888776543 22333333456778889999999999999994 4433332211 111 1234
Q ss_pred eecCCCeEEec
Q 001343 685 LKVSASSAVSS 695 (1096)
Q Consensus 685 ~s~~g~~lv~~ 695 (1096)
+..+|+..+..
T Consensus 514 ~~~~G~~yv~~ 524 (571)
T 2ad6_A 514 YSFKGKQYIGS 524 (571)
T ss_dssp EEETTEEEEEE
T ss_pred EEECCEEEEEE
Confidence 55777766444
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.3e-05 Score=76.91 Aligned_cols=182 Identities=7% Similarity=0.042 Sum_probs=125.7
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 485 (1096)
.-...+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++. +.+..-.++.+.++| .+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCc
Confidence 345778887 4566667778889999999999888754 332 2333223334554 445566789999999 8999
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC--C---cEEEEEEcCCCCEEEEEeecc
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--H---WCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~---~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.+.++..... -+.+++ ++..|+.+..++.|.++|..+.+....+.... . .++.+.|. +|+ |.+...
T Consensus 128 ~~~ti~~~~e-GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw-- 198 (268)
T 3nok_A 128 RERTTRYSGE-GWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW-- 198 (268)
T ss_dssp EEEEEECSSC-CCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET--
T ss_pred EEEEEeCCCc-eeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC--
Confidence 9988875322 245543 44677777779999999999988877654422 2 45667776 665 444432
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCc------------CccceEEEEEeCCCCEEEEEEc
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
....|.+.|.++++.+..+... .....+.++++|+++.|++.+.
T Consensus 199 -~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 -HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 2679999999999999887643 1236688999998777666654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=8.8e-05 Score=80.31 Aligned_cols=255 Identities=9% Similarity=0.014 Sum_probs=143.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcc--cc-c---cccccCCCCEEEEEEcCCCC
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP--FQ-A---SIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~h~~~V~~l~~spd~~ 419 (1096)
...+++|+++|+ ++.++..++.|..|+..+++... |........ .. . .........+..+++++++.
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 457788999998 57778889999999987654321 100000000 00 0 00000123578999998434
Q ss_pred EEEEEECCCeEEEEEccCCCccccce-eecc-cccCEEEEEEec-CCCcEEEEEEeC-----------------CCcEEE
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHS-QIDA-HVGAVNDLAFAY-PNKLLCVVTCGD-----------------DKLIKV 479 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~-~l~~-h~~~v~~l~~s~-d~~~~~l~s~s~-----------------d~~i~i 479 (1096)
.|.++...+.|..+|..++.. ..+. ...+ .......+++.+ +|. +.++-.. ++.|..
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp EEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred cEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEE
Confidence 455565556688888775432 2111 1111 123578899999 887 5555432 367888
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEEcCCCC--eeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
|| .+++.. .+.........+++++ ++..|+.+ ...+.|..|++.... ....+..... ...+++.++|++.++
T Consensus 170 ~d~~~~~~~-~~~~~~~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 170 YDPSTKETT-LLLKELHVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EETTTTEEE-EEEEEESCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred EeCCCCEEE-EeccCCccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 88 445433 2221122345678865 56655554 566899999987421 1112211223 788999999986666
Q ss_pred Eeecc------CCCCeEEEEeCCCCeeeEEEcCcCc---cceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 556 CGTSK------DGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 556 ~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
..... ...+.|..+|. .++.+..+....+ ..+..+++ .++..+++....+.|..+++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 53200 00356888886 4777777654431 23444555 3444444444677888888753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00022 Score=76.37 Aligned_cols=238 Identities=9% Similarity=0.017 Sum_probs=140.9
Q ss_pred CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 333 ~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
.+.+++..+.-......++|+|+|+ ++++-..++.|..||...+ ... .+ .....+..+
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~-----~~---------------~~~~~p~gi 77 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI-----HA---------------TVEGKVSGL 77 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE-----EE---------------ECSSEEEEE
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEE-----EE---------------eCCCCceeE
Confidence 3455566666556789999999998 7777667899999997653 221 11 112468899
Q ss_pred EEcCCCCEEEEEECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc-eEE
Q 001343 413 AWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLF 488 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~-~~~ 488 (1096)
+++++|+++++..... .|..++..+++... +..+. .......++..+++. .+++...++.|+++| ..++ .+.
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~-~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVET-LLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEE-EEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEEE-EEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence 9999999666554332 46667767765322 11121 122335555555554 555555688999999 4432 121
Q ss_pred Eee---------CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCe--eeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 489 NFE---------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 489 ~~~---------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
... +.-.....+ ++++ +.++++-...+.|..++++. +.. ...+. .......++++++|+..++.
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEEC
T ss_pred EECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEe
Confidence 111 111233445 4432 23445556678999999875 211 11111 11235678999999876655
Q ss_pred eeccCCCCeEEEEeCCCCeeeEE--EcCcCccceEEEEEe---CCCCEEEEEEcC
Q 001343 557 GTSKDGDSFLVEWNESEGTIKRT--YAGFRKKSNGVVQFD---TTQNHFLAVGED 606 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~---~~~~~l~~~~~d 606 (1096)
.. .+.|.++|.. ++.... +.... ....+++|. ++++.|++++..
T Consensus 230 ~~----~~~V~~~~~~-G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 230 HI----YNSVVRIAPD-RSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp BT----TCCEEEECTT-CCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CC----CCeEEEECCC-CCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCC
Confidence 43 6789999975 554332 22221 257789998 787777776654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-05 Score=95.91 Aligned_cols=277 Identities=8% Similarity=0.019 Sum_probs=153.8
Q ss_pred EEEEcC-CCCcEEEEEeCCC-----------eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 349 SMDFHP-SHQTLLLVGSSNG-----------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 349 ~v~fsp-~g~~llasg~~dg-----------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
++++.| +|+ +++.|+.+. .+.+||..+++-... . .+...+.....++++..
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~---~-------------~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR---T-------------VTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC---E-------------EEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeC---c-------------ccCCCCCCccccccCCC
Confidence 567777 777 788887543 688899887764321 0 00112333344578889
Q ss_pred CCCEEEEEEC-CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CC-----CcEEEEE-cCCceEE
Q 001343 417 DGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DD-----KLIKVWE-LSGRKLF 488 (1096)
Q Consensus 417 d~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d-----~~i~iwd-~~~~~~~ 488 (1096)
+++.+++|+. +..+.+||..+++-... ..+.... .-.+++..++++ +++.|+ .+ ..+.+|| .+++-.
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~- 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT- 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE-
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeEC-CCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce-
Confidence 9999999984 46899999987643221 1122111 123455667888 778887 44 5799999 555432
Q ss_pred EeeCCC-CCe----EEEEeeecCCCcEEEEEECC---------CeEEEEEcCCCCeeeEEeCCC---------CcEEEEE
Q 001343 489 NFEGHE-APV----YSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPG---------HWCTTML 545 (1096)
Q Consensus 489 ~~~~~~-~~v----~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~---------~~i~~l~ 545 (1096)
.+.... .+. ....+ ..++..++.|+.+ ..+..||..+........... ..-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 221000 000 00001 1133444555444 356778877665333221111 1224444
Q ss_pred Ec-CCCCEEEEEeeccCC----CC---eEEEEeCCCCeeeEEE--cCcCccceEEEEEeCCCCEEEEEEcC---------
Q 001343 546 YS-ADGSRLFSCGTSKDG----DS---FLVEWNESEGTIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGED--------- 606 (1096)
Q Consensus 546 ~s-~~~~~l~~~~~~~~~----~~---~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d--------- 606 (1096)
+. .+++.++.|+..... .. .+.+||..+....... ...........+..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 43 366667776642100 11 6788888877655443 22222223345666899999998854
Q ss_pred --CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC
Q 001343 607 --SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 607 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
..+.+||..+.+....-.............+.|++++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988765432222211112234556789999999985
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=0.0015 Score=76.33 Aligned_cols=195 Identities=9% Similarity=0.083 Sum_probs=117.2
Q ss_pred eeeeecCCCcEEEEec---------------------C----CeEEEEEcccceEEEeecC--CCC----CeeE---EEE
Q 001343 835 PCIALSKNDSYVMSAT---------------------G----GKISLFNMMTFKVMTTFMS--PPP----ASTF---LAF 880 (1096)
Q Consensus 835 ~~l~~s~dg~~la~~~---------------------d----g~v~iwd~~~~~~~~~~~~--h~~----~i~~---l~~ 880 (1096)
..++++|+..+++.+. | +.|.-+|..+|+.+-.++. |.. .+.. +..
T Consensus 249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~ 328 (582)
T 1flg_A 249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDY 328 (582)
T ss_dssp SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEE
T ss_pred CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEee
Confidence 3567777776666544 1 5799999999999877642 321 1111 222
Q ss_pred e-cCCC---cEEEEeeCCCeEEEEeeccceeeeeecccccc---------ccceeeecCC--------------------
Q 001343 881 H-PQDN---NIIAIGTEDSTIHIYNVRVDELCVWSIDTWEK---------RKSVTIHIPA-------------------- 927 (1096)
Q Consensus 881 s-~~d~---~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~---------~~~~~~~~~~-------------------- 927 (1096)
. . ++ +.++.++.+|.+.++|..+++ .+|....... ...+++....
T Consensus 329 ~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~-~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P 406 (582)
T 1flg_A 329 KAK-DGKIVKATAHADRNGFFYVVDRSNGK-LQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSP 406 (582)
T ss_dssp ECS-SSCEEEEEEEECTTSEEEEEETTTCC-EEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESS
T ss_pred ecC-CCCEEEEEEEECCCceEEEEECCCCC-EecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECc
Confidence 2 4 56 478889999999999999998 6775543210 1111111000
Q ss_pred CCCC-CCCceEEEecCCcEEEE-Ee---------------------------------cceEEEEEcccceeccccccCC
Q 001343 928 GKTP-TGDTRVQFNADQVRMLV-VH---------------------------------ETQLAIYDASKMERIRQWTPQD 972 (1096)
Q Consensus 928 ~~~~-~~v~~v~fs~dg~~l~~-~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~ 972 (1096)
+... ..-..++++|+...+++ .. ++.|..||+.+|+.+=+....
T Consensus 407 ~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~- 485 (582)
T 1flg_A 407 PFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH- 485 (582)
T ss_dssp CTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-
T ss_pred CCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-
Confidence 0000 01235677777655554 22 578999999999865444322
Q ss_pred CCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEE
Q 001343 973 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1047 (1096)
Q Consensus 973 ~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s 1047 (1096)
..+..-.....+.++++++.||.++.||.++|+.+....... + +...-+.|.. +|+++++
T Consensus 486 ---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~----g-------~~a~P~~y~~-~G~qYv~ 545 (582)
T 1flg_A 486 ---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS----G-------IVSPPITWEQ-DGEQYLG 545 (582)
T ss_dssp ---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----C-------CCSCCEEEEE-TTEEEEE
T ss_pred ---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC----C-------cccCceEEEE-CCEEEEE
Confidence 122222233457788889999999999999999877665322 2 2211256655 7776555
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7.4e-05 Score=80.90 Aligned_cols=240 Identities=12% Similarity=0.069 Sum_probs=144.5
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccccee-----------------ecccccCEEEEEEec-CCCcEEEE
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ-----------------IDAHVGAVNDLAFAY-PNKLLCVV 469 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----------------l~~h~~~v~~l~~s~-d~~~~~l~ 469 (1096)
...+++|+++|+++.++..++.|..|+..+++.. .+.. .......+..+++.+ ++. |+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l~ 95 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---LY 95 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---EE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc---EE
Confidence 4567889999997888888899999988765322 1100 001123588999997 554 44
Q ss_pred EEeCCCcEEEEEcCCceEEEeeCC-----CCCeEEEEeeecCCCcEEEEEEC-----------------CCeEEEEEcCC
Q 001343 470 TCGDDKLIKVWELSGRKLFNFEGH-----EAPVYSICPHHKENIQFIFSTAI-----------------DGKIKAWLYDT 527 (1096)
Q Consensus 470 s~s~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~ 527 (1096)
.+...+.|..+|..+..+..+... ......+++.+. +|.+.++... +|.|..||..+
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecC-CCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 454455688888443333333211 123567777441 4455554322 36788888765
Q ss_pred CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe--eeEEEcCcCccceEEEEEeCCCCEEEEEEc
Q 001343 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 528 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
+....... .......++++++|+.|+++.. ..+.|..+++.... ....+..... ...++++++|++.++...
T Consensus 175 ~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 175 KETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECSS--EEEEEECTTSCEEEEEEE
T ss_pred CEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCCC--CCCeEECCCCCEEEEecC
Confidence 54332211 1123457999999997776643 26789999987521 1112211111 566899999987666544
Q ss_pred ----------CCeEEEEeCCCCeEEEEeecCCC--CCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 606 ----------DSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 606 ----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.+.|..+|.. ++.+..+..... ...+..+++ .++.++++....+.|..+++..
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 4678888874 777777665432 235667776 3566665555677888888753
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.0018 Score=69.72 Aligned_cols=280 Identities=10% Similarity=0.036 Sum_probs=152.1
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.....+.+|.|.+.+. .+|+| ..|.| +...+.|+.-..... ........+.+|.|++ +..+
T Consensus 33 ~~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~ 93 (327)
T 2xbg_A 33 PTTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGW 93 (327)
T ss_dssp SCSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEE
T ss_pred CCCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEE
Confidence 3345799999998877 57755 56755 333343432111000 0112345688999986 4444
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceE-EEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~v~~~ 500 (1096)
+ ++.++.|.. ..+.|+..........+.+.+..+.+.+++. .++.+ .++.|..-+..|+.- .........+..+
T Consensus 94 ~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 94 I-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp E-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEE
T ss_pred E-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEE
Confidence 4 455665543 4444554432211112445678888887776 55544 466543322333322 2223455678888
Q ss_pred EeeecCCCcEEEEEECCCeE-EEEEcCCCCeeeE-EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 501 CPHHKENIQFIFSTAIDGKI-KAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i-~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
.+.+ ++.+++++ .+|.+ +-+|-. +..-.. .......+..+.+.+++..++++. ++.++..+...++.-.
T Consensus 169 ~~~~--~~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 169 NRSP--SGEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWG 239 (327)
T ss_dssp EECT--TSCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEEC
T ss_pred EEcC--CCcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeE
Confidence 8865 45566555 44544 333320 111111 123345788999999988766553 6677766433233222
Q ss_pred EEcCc---CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC-CCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 579 TYAGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 579 ~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
.+... ....+..+.+.+++..+++ +.+|.| ++..+.++.-..+... .....+.++.|.+++ .+++++.+|.|.
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~ 316 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILL 316 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEE
Confidence 22211 1124677888887665555 456766 4556666655555422 112367889997554 466777888776
Q ss_pred EEE
Q 001343 655 ILA 657 (1096)
Q Consensus 655 iwd 657 (1096)
-++
T Consensus 317 ~~~ 319 (327)
T 2xbg_A 317 RYV 319 (327)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00098 Score=72.55 Aligned_cols=248 Identities=13% Similarity=0.010 Sum_probs=150.5
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
.+..+|.+..+++. ++++ ....|+..++....... +......+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~~-ll~~--~~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCCE-EEEE--CBSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCce-eEee--cccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEE
Confidence 34567777777543 4443 45668888876544321 1112345889999987666665
Q ss_pred EE-CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCCCeEEEE
Q 001343 424 AF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (1096)
Q Consensus 424 ~~-~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~ 501 (1096)
.. ..+.|..++.+++.... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 54 56889999988754222 12222345678999986663 4566666789999996665444433 3334578888
Q ss_pred eeecCCCcEEEEEECC-CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 502 PHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
+.|. ++.++++-... +.|..++++.................+++++++..|+.+.. ..+.|..+|+........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8764 33445554445 78888887654333222233446789999998888877653 3678999998754333333
Q ss_pred cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
..... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 242 ~~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 32222 34556663 34444444466778888866666555554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0003 Score=75.33 Aligned_cols=228 Identities=15% Similarity=0.083 Sum_probs=137.0
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-CC-cEEEEE-cC
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DK-LIKVWE-LS 483 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~-~i~iwd-~~ 483 (1096)
.....++|+++|+.+++-..++.|..||.+++ ... .......+..+++.++|+ ++++... ++ .|..+| .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~----~~~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI----HATVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE----EEECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE----EEeCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 46788999999997777667899999998753 222 112235688999999998 5555443 22 477777 66
Q ss_pred CceEEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE-Ee---------CCCCcEEEEEEcCCCCE
Q 001343 484 GRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YD---------APGHWCTTMLYSADGSR 552 (1096)
Q Consensus 484 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~---------~~~~~i~~l~~s~~~~~ 552 (1096)
++....... .......++..+ ++..+++...++.|.++|......... .. ..-.....+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 665332221 112234444322 333444444588888888765321111 10 111234555 788888
Q ss_pred EEEEeeccCCCCeEEEEeCCC-Cee--eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC
Q 001343 553 LFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
|+.+.. ..+.|..+++.. ++. ...+... . ....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~-~-~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ-T-NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES-C-CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc-C-CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 777653 367899999864 321 1222111 1 23348899999877776677899999975 5553322222222
Q ss_pred CCccEEEEe---CCCCEEEEEECCC
Q 001343 630 PNLPRLRFS---KEGNLLAVTTADN 651 (1096)
Q Consensus 630 ~~v~~~~~s---~~~~~l~~~~~dg 651 (1096)
....+++|. |++..|++++..+
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEecccCCCCEEEEECCCC
Confidence 367899998 8887777766543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=0.0006 Score=79.67 Aligned_cols=311 Identities=11% Similarity=0.049 Sum_probs=174.5
Q ss_pred CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 001343 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434 (1096)
Q Consensus 355 ~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd 434 (1096)
++. +++++.++.|.-+|..+|+.+-+.... ...........-... +++ .+..|++++.|+.|.-+|
T Consensus 68 ~g~--vyv~~~~~~v~AlD~~tG~~~W~~~~~-------~~~~~~~~~~~~~~g---~a~--~~~~v~~~t~dg~l~AlD 133 (582)
T 1flg_A 68 DGV--IYVTASYSRLFALDAKTGKRLWTYNHR-------LPDDIRPCCDVVNRG---AAI--YGDKVFFGTLDASVVALN 133 (582)
T ss_dssp TTE--EEEEETTTEEEEEESSSCCEEEEEECC-------CCTTCCCSSCSCCCC---CEE--ETTEEEEEETTTEEEEEE
T ss_pred CCE--EEEEcCCCCEEEEECCCCcEEEEEcCC-------CCcccccccccCCCc---cEE--ECCEEEEEeCCCEEEEEE
Confidence 454 444555455999999999976432111 000000000000011 112 356778888999999999
Q ss_pred ccCCCccccceeeccccc--CEE-EEEEecC---CCcEEEEEEe------CCCcEEEEE-cCCceEEEeeCCCCCe----
Q 001343 435 YAGSNDLRQHSQIDAHVG--AVN-DLAFAYP---NKLLCVVTCG------DDKLIKVWE-LSGRKLFNFEGHEAPV---- 497 (1096)
Q Consensus 435 ~~~~~~~~~~~~l~~h~~--~v~-~l~~s~d---~~~~~l~s~s------~d~~i~iwd-~~~~~~~~~~~~~~~v---- 497 (1096)
..+|+.+-... +..+.. .+. ......+ ++. .++.++ .++.|+.+| .+|+.+.........+
T Consensus 134 ~~TG~~~W~~~-~~~~~~~~~~~~sP~v~~~~~~G~~-~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~ 211 (582)
T 1flg_A 134 KNTGKVVWKKK-FADHGAGYTMTGAPTIVKDGKTGKV-LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLN 211 (582)
T ss_dssp SSSCCEEEEEE-CSCGGGTCBCCSCCEEEECTTTCCE-EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEET
T ss_pred CCCCCEEeeec-CCCCCcCcccccCCEEeCCCcCCcE-EEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccccccc
Confidence 99998764322 211110 111 1111222 331 244443 378999999 8999887654321100
Q ss_pred -------------------------------------EEEEeeecCCCcEEEEEEC--------------------C---
Q 001343 498 -------------------------------------YSICPHHKENIQFIFSTAI--------------------D--- 517 (1096)
Q Consensus 498 -------------------------------------~~~~~~~~~~~~~l~s~~~--------------------d--- 517 (1096)
..+++.+ +..+++.+.. |
T Consensus 212 ~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~--~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~ 289 (582)
T 1flg_A 212 GKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA--ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLY 289 (582)
T ss_dssp TEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET--TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTT
T ss_pred CcccccccccccccCCCccccccccccccccCCccccCCceEcC--CCCEEEEeCCCCCcccCcccccCCCcccccCCcc
Confidence 0122322 3346665553 2
Q ss_pred -CeEEEEEcCCCCeeeEEeCCCC---------cEEEEEEc-CCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 518 -GKIKAWLYDTMGSRVDYDAPGH---------WCTTMLYS-ADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 518 -g~i~iwd~~~~~~~~~~~~~~~---------~i~~l~~s-~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
+.|..+|.++++.+..+....+ ...-+... .+|+ .++.++. ++.++++|..+|+.+..+...
T Consensus 290 ~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 290 TSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADR----NGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp CSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECT----TSEEEEEETTTCCEEEEEESS
T ss_pred cceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECC----CceEEEEECCCCCEecccccc
Confidence 6899999999999887754321 11111221 4674 5555654 899999999999988766543
Q ss_pred Cc------------cce--------------------------------EEEEEeCCCCEEEEEE---------------
Q 001343 584 RK------------KSN--------------------------------GVVQFDTTQNHFLAVG--------------- 604 (1096)
Q Consensus 584 ~~------------~~i--------------------------------~~~~~~~~~~~l~~~~--------------- 604 (1096)
.. .++ ..++++|+...+++..
T Consensus 366 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 445 (582)
T 1flg_A 366 DNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYT 445 (582)
T ss_dssp SCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCC
T ss_pred cCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccccccc
Confidence 20 000 1245666555555432
Q ss_pred ------------------cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccc
Q 001343 605 ------------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (1096)
Q Consensus 605 ------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 666 (1096)
.+|.|+.||+.+++.+........ +..-.....+.+++.++.|+.++.||..+++ .+-
T Consensus 446 ~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~g~~dg~l~A~D~~tG~-~lW 521 (582)
T 1flg_A 446 KGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFDAKSGK-ELW 521 (582)
T ss_dssp TTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEETTTCC-EEE
T ss_pred CCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC---CcccceEeCCCEEEEECCCCcEEEEECCCCC-EEE
Confidence 257899999999998877764432 2222222356788889999999999999994 443
Q ss_pred cccCCCcccccCcceeEEeecCCCeEEec
Q 001343 667 AVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 667 ~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
.+..... .. ..-+.+..+|+..++.
T Consensus 522 ~~~~~~g-~~---a~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 522 KFQTGSG-IV---SPPITWEQDGEQYLGV 546 (582)
T ss_dssp EEECSSC-CC---SCCEEEEETTEEEEEE
T ss_pred EecCCCC-cc---cCceEEEECCEEEEEE
Confidence 3333211 11 1225666788765443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00018 Score=71.93 Aligned_cols=184 Identities=8% Similarity=0.032 Sum_probs=124.1
Q ss_pred CCCEEEEEEcCCCCEEEEEECC--CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 406 PISVSRVAWSPDGNYVGVAFTK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
..-...+.|++ +.+..+.+.+ ..|+++|+.+++.++.. .+.. .........++.. +.+..-.++.+.++| .
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~---~~fgeGi~~~~~~-ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPP---PYFGAGIVAWRDR-LIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCT---TCCEEEEEEETTE-EEEEESSSSEEEEEETT
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCC---CcceeEEEEeCCE-EEEEEeeCCEEEEEECC
Confidence 45577899986 5555555554 48999999999877643 2222 2222222333553 444556789999999 8
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-----CcEEEEEEcCCCCEEEEEe
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-----HWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~~~~l~~~~ 557 (1096)
+.+.+.++...... +.++. ++..|+.+..++.|.++|..+.+....+.... ..++.+.+. +|+ +.+..
T Consensus 94 tl~~~~ti~~~~~G-wglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanv 166 (243)
T 3mbr_X 94 TLTPRARFRYPGEG-WALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANV 166 (243)
T ss_dssp TTEEEEEEECSSCC-CEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred cCcEEEEEeCCCCc-eEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEEEE
Confidence 99999888754332 45543 34556666678999999999988776655422 245566665 565 44433
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCc------------CccceEEEEEeCCCCEEEEEEc
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
. ....|.+.|.++++.+..+... .....+.++++|+++.|++.+.
T Consensus 167 w---~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 W---LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp T---TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred C---CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 2 2679999999999999887632 2236688999998888777764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00083 Score=74.31 Aligned_cols=247 Identities=13% Similarity=0.016 Sum_probs=150.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE-
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~- 424 (1096)
.-.|.+..+.+. +++ + ....|+..++..+.... +......+..++|++.+..|...
T Consensus 78 ~~~C~~~~~~~~-l~~-~-~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEPV-LLF-A-NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCCE-EEE-E-CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccce-eEe-e-cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 445666666442 333 3 45678888887654321 11223458899999876666555
Q ss_pred ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEe-eCCCCCeEEEEee
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICPH 503 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~ 503 (1096)
...+.|..++.+++.... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+ ...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 456789999988754222 12222334578899886663 455666677888888656544433 3333557888887
Q ss_pred ecCCCcEEEEEECC-CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC
Q 001343 504 HKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 504 ~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
|. ++.++++-... +.|..++++.................+++++++..|+.+.. ..+.|..+|+........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 64 33444444444 78888887754444443334446889999998888877653 367899999865443333332
Q ss_pred cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec
Q 001343 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 583 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
... ....+++. .+..+++-...+.|..++..+++....+..
T Consensus 287 ~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 222 44556663 344455555677888888767766666553
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0006 Score=69.28 Aligned_cols=199 Identities=10% Similarity=0.058 Sum_probs=130.9
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
.+.+..++|+|++..|+|+...++.|...|.. ++.+.... +.+ ......|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 35799999999877678888889999999987 77665311 222 256888999999987776
Q ss_pred EECCCeEEEEEccCCCcccccee--e----cccccCEEEEEEecCCCcEEEEEEeCCC--cEEEEE--cCCceEEEee--
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQ--I----DAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE--LSGRKLFNFE-- 491 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~--l----~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~i~iwd--~~~~~~~~~~-- 491 (1096)
.-.++.+.++++.....+..... + ...+.....++|+|+++. |.++.... .|+.|+ ..+..+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence 65678899998876543221111 1 123556799999999984 44444443 455554 1222222221
Q ss_pred -----CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC---------CcEEEEEEcCCCCEEEEEe
Q 001343 492 -----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 492 -----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~~~~l~~~~ 557 (1096)
.+...+.+++++|. .+++++.....+.+.++|... +.+..+.... ...-.|+|.++|+..++ +
T Consensus 165 ~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred hhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence 13345789999886 457788888888999998664 3444443332 26789999999985555 4
Q ss_pred eccCCCCeEEEEe
Q 001343 558 TSKDGDSFLVEWN 570 (1096)
Q Consensus 558 ~~~~~~~~i~iwd 570 (1096)
. .+.++.+.
T Consensus 242 E----~n~~y~f~ 250 (255)
T 3qqz_A 242 E----PNRFYRFT 250 (255)
T ss_dssp T----TTEEEEEE
T ss_pred C----CceEEEEE
Confidence 3 55666654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00041 Score=69.28 Aligned_cols=184 Identities=15% Similarity=0.105 Sum_probs=126.6
Q ss_pred cCEEEEEEecCCCcEEEEEEeCC--CcEEEEE-cCCceEEEeeCCCCCe-EEEEeeecCCCcEEEEEECCCeEEEEEcCC
Q 001343 452 GAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEGHEAPV-YSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 452 ~~v~~l~~s~d~~~~~l~s~s~d--~~i~iwd-~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (1096)
.....+.|++ +. +..+.+.+ ..|+.+| .+|+.+....-..... -.+++ .+ +.+....-.++.+.+||..+
T Consensus 21 ~ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~-~~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 21 AFTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WR-DRLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp CCEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTT
T ss_pred cccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eC-CEEEEEEeeCCEEEEEECCc
Confidence 3467899986 44 66676665 4899999 8999988876433321 23343 32 34555566789999999999
Q ss_pred CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc----cceEEEEEeCCCCEEEEE
Q 001343 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAV 603 (1096)
Q Consensus 528 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~ 603 (1096)
.+.+..+...... ..++ +++..|+.+. +++.|.++|..+.+.++++..... ..++.+.+. +|..++..
T Consensus 95 l~~~~ti~~~~~G-wglt--~dg~~L~vSd----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 95 LTPRARFRYPGEG-WALT--SDDSHLYMSD----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TEEEEEEECSSCC-CEEE--ECSSCEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CcEEEEEeCCCCc-eEEe--eCCCEEEEEC----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 9988887765432 3443 5677666653 378999999999999888765321 133445554 55544334
Q ss_pred EcCCeEEEEeCCCCeEEEEeecCC-----------CCCCccEEEEeCCCCEEEEEEC
Q 001343 604 GEDSQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
-.+..|.+.|..+++.+..+.... ...-.+.|+++|+++.|++.+.
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 367899999999999998887431 1224688999998877777765
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0039 Score=66.75 Aligned_cols=231 Identities=9% Similarity=0.002 Sum_probs=142.6
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC----ceEEE-eeCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG----RKLFN-FEGHE 494 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~----~~~~~-~~~~~ 494 (1096)
+|+.+. ...|+..|+.+.+... +......+..++|.+++.. ++++-..++.|..++..+ ..... +...-
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEEC-CCeEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 344443 3578889988765433 2223456889999987663 555666678999999444 22222 22222
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ..+.|...++..
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG- 152 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG- 152 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence 34577887543 33455566678899999987554444444344578899999977777665431 126888888754
Q ss_pred eeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
.....+....-.....+++++++..|+.+. ..+.|..+|++...................+++. .+.++++....+.|
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 333333222222567799999877777665 5679999999754333333322222245678885 45566666667888
Q ss_pred EEEEcCCC
Q 001343 654 KILANAIG 661 (1096)
Q Consensus 654 ~iwd~~~~ 661 (1096)
..++..++
T Consensus 232 ~~~~~~~g 239 (316)
T 1ijq_A 232 FSANRLTG 239 (316)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88887666
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0094 Score=63.76 Aligned_cols=231 Identities=12% Similarity=-0.005 Sum_probs=139.1
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEccCC---Cc
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGS---ND 440 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~~---~~ 440 (1096)
....|+..|+.+++... +......+..++|++++..|..+. .++.|..++.++. ..
T Consensus 8 ~~~~I~~i~~~~~~~~~--------------------~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~ 67 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 67 (316)
T ss_dssp CBSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred CCCeEEEEECCCcceEe--------------------hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc
Confidence 45678888988765432 111234678999999776666554 4689999998762 22
Q ss_pred cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEe-eCCCCCeEEEEeeecCCCcEEEEEEC-C-
Q 001343 441 LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICPHHKENIQFIFSTAI-D- 517 (1096)
Q Consensus 441 ~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~-d- 517 (1096)
... .+...-.....+++.+.+.. +.++-...+.|.+.+..|+....+ .........+++.|. + ..|+.+.. .
T Consensus 68 ~~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~-g~ly~~d~~~~ 142 (316)
T 1ijq_A 68 YDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-H-GFMYWTDWGTP 142 (316)
T ss_dssp CEE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-T-TEEEEEECSSS
T ss_pred cEE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-C-CEEEEEccCCC
Confidence 221 12222245678999876653 455666788999999666554443 323456788888764 2 34444443 3
Q ss_pred CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc-CccceEEEEEeCC
Q 001343 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTT 596 (1096)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~ 596 (1096)
+.|...+++...........-.....+++++++..|+.+.. ..+.|..+|+............ .......+++. .
T Consensus 143 ~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~ 218 (316)
T 1ijq_A 143 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-E 218 (316)
T ss_dssp CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-T
T ss_pred CeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-C
Confidence 68888887644333333333457889999998888877653 3678999998743322222221 11134456664 3
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 597 QNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
+..+++-...+.|..++..+++.+..+.
T Consensus 219 ~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 219 DKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 4444555567788888887776555553
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0033 Score=68.32 Aligned_cols=226 Identities=10% Similarity=-0.049 Sum_probs=136.7
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
++.++.........+.....+..++|++.+..++.+-...+.|..++...+..... +....
T Consensus 55 I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-------------------~~~~~ 115 (349)
T 3v64_C 55 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-------------------VSTGL 115 (349)
T ss_dssp EEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------------------ECSSC
T ss_pred eEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE-------------------EeCCC
Confidence 44444333333444444556899999987765666666778999999876543210 11122
Q ss_pred CCEEEEEEcCCCCEEE-EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-CcEEEEEcCC
Q 001343 407 ISVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-KLIKVWELSG 484 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-~~i~iwd~~~ 484 (1096)
.....+++.+.+..|. +-...+.|.+.+.+.... .. .+...-.....+++.|.+.. ++++-... +.|...+.+|
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~--l~~~~l~~P~~iavdp~~g~-ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KV--LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EECTTCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTS
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EE--EEeCCCCCcceEEEecCcCe-EEEeccCCCCEEEEEeCCC
Confidence 3457889998655554 445567899999876432 21 12233456799999997664 44444444 7888888666
Q ss_pred ceEEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 485 RKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 485 ~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
.....+.. .-.....+++.+. ++.+.++-...+.|..++++.................+++. +..++.+.. +.
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~-~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~---~~ 265 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYA-GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDW---HT 265 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEET---TT
T ss_pred CCcEEEEECCCCCcceEEEeCC-CCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecC---CC
Confidence 65555432 2334678998764 33445555567889999987544433343334456777773 334444332 26
Q ss_pred CeEEEEeCCCCeeeEEEc
Q 001343 564 SFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~ 581 (1096)
+.|..++..+|+....+.
T Consensus 266 ~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 266 KSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TEEEEEETTTCCSCEEEE
T ss_pred CeEEEEEccCCCccEEec
Confidence 677777766665555544
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0021 Score=71.12 Aligned_cols=227 Identities=10% Similarity=-0.058 Sum_probs=137.5
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
++.++.........+.....+..++|++.+..++.+-...+.|..++...+..... +....
T Consensus 98 I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-------------------~~~~~ 158 (386)
T 3v65_B 98 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-------------------VSTGL 158 (386)
T ss_dssp EEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE-------------------ECSSC
T ss_pred ceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE-------------------EeCCC
Confidence 55554433444444445567899999987665677766778999999876543210 11122
Q ss_pred CCEEEEEEcCCCCEEEE-EECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-CcEEEEEcCC
Q 001343 407 ISVSRVAWSPDGNYVGV-AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-KLIKVWELSG 484 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-~~i~iwd~~~ 484 (1096)
.....+++++.+..|.. -...+.|.+.+++...... .+.........+++.|.+.. ++++-... +.|...+.+|
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTS
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCC
Confidence 34567889986555544 4456788888887543211 12233456799999987774 34444444 6788888666
Q ss_pred ceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 485 RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 485 ~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
.....+. ..-.....+++.+.. +.+.++-+..+.|..+|++.................+++. . ..++.+.. +.
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~-~~ly~td~---~~ 308 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWTDW---HT 308 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-T-TEEEEEET---TT
T ss_pred CCcEEEEECCCCCeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-C-CEEEEeeC---CC
Confidence 6554443 223346789997643 3455555667889999887544433343334456777773 3 34444332 26
Q ss_pred CeEEEEeCCCCeeeEEEcC
Q 001343 564 SFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~ 582 (1096)
+.|..++..+|+.+..+..
T Consensus 309 ~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 309 KSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp TEEEEEETTTCCSCEEEEC
T ss_pred CeEEEEECCCCcceEEEcc
Confidence 7787777666666555543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00029 Score=84.50 Aligned_cols=276 Identities=10% Similarity=-0.045 Sum_probs=148.7
Q ss_pred EEEEcC-CCCEEEEEECCC-----------eEEEEEccCCCccccceeec-ccccCEEEEEEecCCCcEEEEEEe-CCCc
Q 001343 411 RVAWSP-DGNYVGVAFTKH-----------LIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG-DDKL 476 (1096)
Q Consensus 411 ~l~~sp-d~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s-~d~~ 476 (1096)
++++.+ +++.++.|+.+. .+.+||..+++-... ..+. .+.....++++..+++ +++.|+ .+..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~~~~~~~~~~~~~~~~g~--lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-TVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-EEEECSCCCSSCEEEECTTSC--EEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-cccCCCCCCccccccCCCCCC--EEEeCCCCCCc
Confidence 556777 888888887543 588999988764322 1222 2333344577888898 788887 4568
Q ss_pred EEEEE-cCCceEEEeeCCCCCe-EEEEeeecCCCcEEEEEE-CC-----CeEEEEEcCCCCeeeEE-----eCCCCcEEE
Q 001343 477 IKVWE-LSGRKLFNFEGHEAPV-YSICPHHKENIQFIFSTA-ID-----GKIKAWLYDTMGSRVDY-----DAPGHWCTT 543 (1096)
Q Consensus 477 i~iwd-~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~-----~~~~~~i~~ 543 (1096)
+.+|| .+++-...-..+..+- .+++..+ ++++++.|+ .+ ..+.+||..+..-...- ...... ..
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~ 343 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQ 343 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TT
T ss_pred eEEecCcCCceeECCCCCccccccceEEec--CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-cc
Confidence 99999 6554332211122211 2233322 667888888 34 46889998765432210 000000 00
Q ss_pred EEEcCCCCEEEEEeecc-----CCCCeEEEEeCCCCeeeEEEcCcCc--------cceEEEEEeC-CCCEEEEEEcCC--
Q 001343 544 MLYSADGSRLFSCGTSK-----DGDSFLVEWNESEGTIKRTYAGFRK--------KSNGVVQFDT-TQNHFLAVGEDS-- 607 (1096)
Q Consensus 544 l~~s~~~~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~--------~~i~~~~~~~-~~~~l~~~~~dg-- 607 (1096)
..+..++...+.++.+. .....+..||..+............ ..-.++.+.. +++.+++|+.++
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 11223444444444311 0145678899887664433222111 1223344544 566777777432
Q ss_pred ---------eEEEEeCCCCeEEEEeecCCCCCCc-cEEEEeCCCCEEEEEECC-----------CcEEEEEcCCCccccc
Q 001343 608 ---------QIKFWDMDNVNILTSTDAEGGLPNL-PRLRFSKEGNLLAVTTAD-----------NGFKILANAIGLRSLR 666 (1096)
Q Consensus 608 ---------~i~iwd~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~ 666 (1096)
.|.+||..+................ .+++..|++++++.|+.+ ..+.+||..++. . .
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~-W-~ 501 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-F-Y 501 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-E-E
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc-e-e
Confidence 6888888877655543111111122 455677899999999864 468899987652 1 1
Q ss_pred cccCCCcccccCcceeEEeecCCCeEEecC
Q 001343 667 AVENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 667 ~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
.+... ...+.......+.++|+.++.+.
T Consensus 502 ~~~~~--~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 502 KQNPN--SIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp ECCCC--SSCCCTTEEEEECTTSCEEEEEC
T ss_pred ecCCC--CCccccccHhhcCCCcEEEecCC
Confidence 11111 11122222344556777665554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0085 Score=66.44 Aligned_cols=231 Identities=9% Similarity=-0.003 Sum_probs=146.9
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC-----ceEEEeeCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG-----RKLFNFEGHE 494 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~~~ 494 (1096)
+|+.+. ...|+..++++..... +......+..++|.+.+.. ++++-...+.|+.++..+ .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 454444 4688888888754332 2334567899999987663 445555678888888444 2222333234
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
.....+++.+. .+.+.++-...+.|.+.+++.................+++.|.+..|+.... ...+.|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 45678888653 3455666667889999988766555555545556899999998777776542 11367888887654
Q ss_pred eeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
.....+...- .....+++++++..|+.+. ..+.|..+|++...................+++. .+.++.+-...+.|
T Consensus 236 ~~~~~~~~~l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCC-CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 4333333222 2567799998887777765 5678999998765544444432222345677773 34455566667888
Q ss_pred EEEEcCCC
Q 001343 654 KILANAIG 661 (1096)
Q Consensus 654 ~iwd~~~~ 661 (1096)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88887777
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.018 Score=61.87 Aligned_cols=196 Identities=14% Similarity=0.058 Sum_probs=112.4
Q ss_pred CCeeeeeecCCCcEEEEecCCeEEEEEcccce-EEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeee
Q 001343 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVW 910 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~-~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w 910 (1096)
..+..+.+.++++.++.+.+|.|..- ...|+ -......+...+..+++.+ ++.+++++...+.++-+|- .+. .|
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~-gG~--tW 196 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEP-GQT--AW 196 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECT-TCS--SC
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCC-CCC--ce
Confidence 34667888788888887776654321 12232 2222234556788999999 7877776644332232321 011 11
Q ss_pred eccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccC-CCCCCCceEEEEeeCCcE
Q 001343 911 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQ-DALSAPISCAVYSCNSQL 989 (1096)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~i~~l~~s~dg~~ 989 (1096)
. .+... ... .+..+.+.+++..++++.++.+.+.+.+.|+.-..+... -.....+.++++.+++.+
T Consensus 197 ~----------~~~~~--~~~-~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (327)
T 2xbg_A 197 E----------PHNRT--TSR-RLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV 263 (327)
T ss_dssp E----------EEECC--SSS-CEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred e----------ECCCC--CCC-ccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence 1 11111 122 678899999998887788888887754445543333211 000345788999888887
Q ss_pred EEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEc
Q 001343 990 VFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1058 (1096)
Q Consensus 990 la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~ 1058 (1096)
++++ .+|.| ++..+.|+.-..+.... . +...++ .+.|.+ + ..+++++.+|.|.-++
T Consensus 264 ~~~g-~~g~i-~~S~DgG~tW~~~~~~~----~---~~~~~~--~v~~~~-~-~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 264 WLAG-GAGAL-LCSQDGGQTWQQDVDVK----K---VPSNFY--KILFFS-P-DQGFILGQKGILLRYV 319 (327)
T ss_dssp EEEE-STTCE-EEESSTTSSCEECGGGT----T---SSSCCC--EEEEEE-T-TEEEEECSTTEEEEEC
T ss_pred EEEe-CCCeE-EEeCCCCcccEEcCccC----C---CCCCeE--EEEEEC-C-CceEEEcCCceEEEEc
Confidence 7755 46766 45566676443332111 0 122455 477765 4 4566677899887765
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0013 Score=73.83 Aligned_cols=239 Identities=8% Similarity=0.123 Sum_probs=139.5
Q ss_pred CEEEEEEcC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-CC----cEEEEE
Q 001343 408 SVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DK----LIKVWE 481 (1096)
Q Consensus 408 ~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~----~i~iwd 481 (1096)
....|+++| ++..|.++...+.|+.+|.+++.... +.........++|+++++ .|+.+.. ++ .+.+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~~~~~~P~~ia~d~~G~--~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VYSGLSKVRTICWTHEAD--SMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EECCCSCEEEEEECTTSS--EEEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----EecCCCCcceEEEeCCCC--EEEEEeCCCCcccceEEEEe
Confidence 467899998 46667666655889999988754322 333455689999999998 4444443 22 344444
Q ss_pred cCCceE--EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC-CCCcEEEEEEcCCCCEEEEEee
Q 001343 482 LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 482 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
..+... ..+.. ......++++|. ++.++++-..++.|..++............ .......++|+|+|++|+.+..
T Consensus 212 ~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 212 RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 444332 23321 223456777553 455666666778999999876554222222 2235788999999997766543
Q ss_pred ccCCCCeEEEEeCCC--Cee--eEEEcCc------Cc--------cceE-EEEEe--------CCCCEEEEEEcCCeEEE
Q 001343 559 SKDGDSFLVEWNESE--GTI--KRTYAGF------RK--------KSNG-VVQFD--------TTQNHFLAVGEDSQIKF 611 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~--~~~--~~~~~~~------~~--------~~i~-~~~~~--------~~~~~l~~~~~dg~i~i 611 (1096)
..+.|..++... +.. ...+.+. .. .... .++.. +++..+++=...+.|+.
T Consensus 290 ---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 290 ---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp ---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred ---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 277888877542 322 2222221 00 0122 35553 33444444456678988
Q ss_pred EeCCCCeEEEEeec---------CC------CCCCccEEEEeCC-CCEEEEEECCCcEEEEEc
Q 001343 612 WDMDNVNILTSTDA---------EG------GLPNLPRLRFSKE-GNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 612 wd~~~~~~~~~~~~---------~~------~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~ 658 (1096)
++. .+........ .+ .......++++|+ +.++++-...+.|+.+++
T Consensus 367 i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 367 LTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp ECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred ECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 884 5554433321 00 0124678999994 555555555677877765
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00069 Score=82.45 Aligned_cols=200 Identities=7% Similarity=-0.019 Sum_probs=111.7
Q ss_pred ccCCC-CEEEEEEc-CCCCEEEEEEC-CC----eEEEEEccCC-CccccceeecccccCEEEEEEecCCCcEEEEEEeCC
Q 001343 403 KDVPI-SVSRVAWS-PDGNYVGVAFT-KH----LIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1096)
Q Consensus 403 ~~h~~-~V~~l~~s-pd~~~l~s~~~-dg----~i~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d 474 (1096)
.+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+.. .+. .....++|+|||+ .|+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~--~l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHT--SLFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTT--EEEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCC--EEEEEEEC
Confidence 34543 78899999 99999986543 22 5999999998 63321 121 1235789999998 45444444
Q ss_pred -----CcEEEEE-cCCce--EEEeeC-CCCCeEEEEeeecCCCcEEEEEEC---CCeEEEEEcCCCC-ee--eEEe-CCC
Q 001343 475 -----KLIKVWE-LSGRK--LFNFEG-HEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMG-SR--VDYD-APG 538 (1096)
Q Consensus 475 -----~~i~iwd-~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~-~~--~~~~-~~~ 538 (1096)
..|++++ .++.. ...+.. .......+.|++ ||++|+..+. ...|.++|+.+.. .. ..+. ...
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 2577777 44431 223332 223455667755 6777776553 3467788887653 22 2222 223
Q ss_pred CcEEEEEEcCCCCEEEEEeecc-CCCCeEEEEeCCCC-eeeE-EEcCcCccceEEEEEeCCCCEE-EEEEcCCe--EEEE
Q 001343 539 HWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEG-TIKR-TYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQ--IKFW 612 (1096)
Q Consensus 539 ~~i~~l~~s~~~~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~--i~iw 612 (1096)
....++.|+. |..|+..+... .+...|+.+++.++ +... .+.......+..+.+ .++.| ++...++. |+++
T Consensus 320 ~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEE
Confidence 3445555433 66665554322 23568888888753 3222 233322213344444 44454 55566675 5556
Q ss_pred eC
Q 001343 613 DM 614 (1096)
Q Consensus 613 d~ 614 (1096)
++
T Consensus 397 dl 398 (751)
T 2xe4_A 397 MA 398 (751)
T ss_dssp EC
T ss_pred ec
Confidence 65
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0077 Score=61.12 Aligned_cols=206 Identities=12% Similarity=0.101 Sum_probs=131.6
Q ss_pred eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEE
Q 001343 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1096)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (1096)
.+.+-.+.+..++|+|++.. ++++...++.|...|.+++.+..+.- -....-.+++. +++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~-L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~--~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNT-LFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYI--GDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTE-EEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEEC--STTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCE-EEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEe--CCCEEEEEECCCCcEEEEE
Confidence 35566678999999998774 44456668899999966988887742 22456777775 4666666666678899998
Q ss_pred cCCCCee---eEEe------CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC-CCCeeeEEEcC------cCccce
Q 001343 525 YDTMGSR---VDYD------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE-SEGTIKRTYAG------FRKKSN 588 (1096)
Q Consensus 525 ~~~~~~~---~~~~------~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~------~~~~~i 588 (1096)
+...... .... ..+.....++++|.++.|+++... ....|+.|+- .....+..+.. ..-...
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~--~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK--NPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES--SSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc--CCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 8765531 1221 123357899999999888877641 1225656651 11111222211 111246
Q ss_pred EEEEEeCCCCEEEE-EEcCCeEEEEeCCCCeEEEEeecCCC-------CCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 589 GVVQFDTTQNHFLA-VGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 589 ~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
..++++|....+++ ...++.+.++|.. ++.+..+..... ......|+|.++|++.++ +..+.++.|..
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 77999997665555 4567789999975 556666655432 235678999999985554 66666666643
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.92 E-value=0.011 Score=65.39 Aligned_cols=233 Identities=9% Similarity=-0.030 Sum_probs=136.5
Q ss_pred ceeeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 325 HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+.+..++.........+..-..+..++|++.+..++.+-...+.|..+++........ ...++..
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~---------------~~~~~~~ 156 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISR 156 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC---------------CEEEECS
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc---------------ceEEEeC
Confidence 3355555444444444556678999999997665666666678899998865321000 0001222
Q ss_pred CCCCEEEEEEcCCCCEEE-EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEE-eCCCcEEEEEc
Q 001343 405 VPISVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWEL 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~-s~d~~i~iwd~ 482 (1096)
.-.....+++.+.+..|. +-...+.|.+.++++..... .+...-.....+++.|.+.. ++++- +..+.|...+.
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~---l~~~~~~~P~~iavdp~~g~-ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT---LFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE---EEECSSCCEEEEEEETTTTE-EEEEECSSSCCEEEEET
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE---EEeCCCCCcceEEEecccCe-EEEEeCCCCCEEEEEeC
Confidence 344678999998555554 44556899999987643222 12233445889999997763 33333 23477888887
Q ss_pred CCceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC--CCCcEEEEEEcCCCCEEEEEeec
Q 001343 483 SGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 483 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
+|.....+. ..-.....+++.+.. +.+.++-...+.|..+|++.......... .......+++ ++..++....
T Consensus 233 dG~~~~~~~~~~l~~P~glavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~- 308 (400)
T 3p5b_L 233 NGVDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI- 308 (400)
T ss_dssp TSCSCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEES-
T ss_pred CCCccEEEEECCCCceEEEEEEeCC-CEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecC-
Confidence 776555443 233457889987643 33444445678899999875444333332 1234556666 3334444332
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcC
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
+.+.|..+|..+|+.+..+..
T Consensus 309 --~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 309 --INEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp --SSCSEEEEESSSCCCCEEEEC
T ss_pred --CCCeEEEEEcCCCCceEEEec
Confidence 266788888777766665543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.90 E-value=0.01 Score=63.24 Aligned_cols=233 Identities=10% Similarity=0.023 Sum_probs=142.1
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE-ECCCeEEEEEccCCCcccc
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQ 443 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~ 443 (1096)
....|+..++........ + +......+..++|++.+..|..+ ...+.|..++.+++.....
T Consensus 11 ~~~~I~~i~l~~~~~~~~--~----------------~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~ 72 (318)
T 3sov_A 11 NRRDLRLVDATNGKENAT--I----------------VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN 72 (318)
T ss_dssp CEEEEEEEETTCTTSCCE--E----------------EEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE
T ss_pred ccCeEEEEECCCCceEEE--E----------------EecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE
Confidence 457899999876531110 0 11112356789999965555544 4567899999887632221
Q ss_pred ceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEE--CCCeE
Q 001343 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTA--IDGKI 520 (1096)
Q Consensus 444 ~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i 520 (1096)
.+...-.....+++.+.+.. +.++-...+.|.+++.+|.....+. ........+++.|.. ..|+.+. ..+.|
T Consensus 73 --~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I 147 (318)
T 3sov_A 73 --VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKI 147 (318)
T ss_dssp --EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEE
T ss_pred --EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEE
Confidence 12222345678999876553 5556666789999996665544443 344557888887642 3455444 35788
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
...+++...........-.....+++++++..|+.+.. ..+.|..+|+........+.+... ....+++.. +..+
T Consensus 148 ~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~ly 222 (318)
T 3sov_A 148 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILY 222 (318)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEE
T ss_pred EEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEE
Confidence 88887644333333333446789999998888877653 377899999865433333332222 344566643 3444
Q ss_pred EEEEcCCeEEEEeCCCCeEEEEeec
Q 001343 601 LAVGEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
++-...+.|..++..+++....+..
T Consensus 223 wtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEecCCCeEEEEECCCCCceEEEeC
Confidence 4544677888888877776555543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0033 Score=70.45 Aligned_cols=239 Identities=8% Similarity=0.104 Sum_probs=139.3
Q ss_pred CEEEEEEcCC--CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC---Cc-EEEEE
Q 001343 408 SVSRVAWSPD--GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD---KL-IKVWE 481 (1096)
Q Consensus 408 ~V~~l~~spd--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d---~~-i~iwd 481 (1096)
....|+|+|+ +..|..+...+.|+.+|..++.... +.........++|+++|+ ++++.... .. +...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEEE
Confidence 4678999995 4555555444899999987765432 333455689999999999 56655422 22 33334
Q ss_pred cCCceE--EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeC-CCCcEEEEEEcCCCCEEEEEe
Q 001343 482 LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDA-PGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 482 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~-~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
..+... ..+. .......+++.+. ++.+.++-..++.|+.+|..++.... .... .......++++|+++.|+.+.
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 222211 1121 1223455666552 44555565567889999887665522 2221 222345799999999777664
Q ss_pred eccCCCCeEEEEeCC--CCee--eEEEcCc------C--------ccceEEEEE---------eCCCCEEEEEEcCCeEE
Q 001343 558 TSKDGDSFLVEWNES--EGTI--KRTYAGF------R--------KKSNGVVQF---------DTTQNHFLAVGEDSQIK 610 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~--~~~~--~~~~~~~------~--------~~~i~~~~~---------~~~~~~l~~~~~dg~i~ 610 (1096)
. ..+.|+.++.. ++.. ...+.+. . -.....+++ .++++++++-...+.|+
T Consensus 292 ~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 292 N---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp T---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred C---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 3 36789887765 3322 1222221 0 012455888 66666666656778899
Q ss_pred EEeCCCCeEEEEeecCCC----------------CCCccEEEEe-CCCCEEEEEECCCcEEEEEcC
Q 001343 611 FWDMDNVNILTSTDAEGG----------------LPNLPRLRFS-KEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 611 iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
.++. ++... .+.+... ......++++ +++.++++-...+.|+.++++
T Consensus 369 ~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 9985 55443 3322211 1235678998 566666665566778777653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.029 Score=67.49 Aligned_cols=231 Identities=9% Similarity=0.001 Sum_probs=143.5
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc-----eEEEeeCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-----KLFNFEGHE 494 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~~ 494 (1096)
+|+.+ ....|+..++....... +......+..++|.+.+.. ++++-...+.|+.++..+. ....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44433 34578888887654322 3334567889999986663 5556666788888885442 223333234
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
.....|++.+.. +.++++-...+.|.+.+++.................|++.|.+..|+..... ....|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 456678886542 3556666678899999988655544444455578999999987777766431 1367888888654
Q ss_pred eeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
.....+...- .....+++++.+..|+.+. ..+.|..++++.......+...........|++..+ .++++-...+.|
T Consensus 548 ~~~~lv~~~l-~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I 625 (791)
T 3m0c_C 548 DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAI 625 (791)
T ss_dssp CEEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEE
T ss_pred ceEEEEeCCC-CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEE
Confidence 4433333222 2567799998777777765 557899999976655555543332223456666433 344444456778
Q ss_pred EEEEcCCC
Q 001343 654 KILANAIG 661 (1096)
Q Consensus 654 ~iwd~~~~ 661 (1096)
...+..++
T Consensus 626 ~~~dk~tG 633 (791)
T 3m0c_C 626 FSANRLTG 633 (791)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88887666
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.74 E-value=0.023 Score=60.51 Aligned_cols=225 Identities=8% Similarity=-0.004 Sum_probs=137.8
Q ss_pred CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCce--EEEeeCCCCCeEEEEeee
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK--LFNFEGHEAPVYSICPHH 504 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~ 504 (1096)
...|+.+++++...... .+......+..++|.+.+.. ++.+-...+.|..++..+.. ...+...-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~--~~~~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT--IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCE--EEEEEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEE--EEecCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 46899999987541111 11122345778999986663 55566667889999944331 112222223456777754
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
. ++.+.++-...+.|.+++++.................+++.|.+..|+.+.. ...+.|...++.... ...+....
T Consensus 89 ~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~--~~~~~I~r~~~dG~~-~~~~~~~~ 164 (318)
T 3sov_A 89 L-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMDGSS-RFIIINSE 164 (318)
T ss_dssp T-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC--SSSCEEEEEETTSCS-CEEEECSS
T ss_pred C-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec--CCCCEEEEEEcCCCC-eEEEEECC
Confidence 3 3455566667789999998765444444344457889999998777766542 125678888876433 23332111
Q ss_pred ccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 585 KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
-.....+++++++..|+.+. ..+.|..++++........... ......+++.. +.++.+-...+.|..++..++
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC--CCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 22457799999777776665 5678999998754433333312 23567788753 345555556778888888776
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0055 Score=68.68 Aligned_cols=235 Identities=12% Similarity=0.076 Sum_probs=132.4
Q ss_pred CceEEEEEcCC---CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 345 STVISMDFHPS---HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 345 ~~V~~v~fsp~---g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.....++|+|+ |. |+++ ...+.|+.+|..++.... +.........++|+++|+ |
T Consensus 139 ~~P~gvavd~~s~~g~-Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~-l 195 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDD-LYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGD-M 195 (433)
T ss_dssp SCCCEEEECTTTTTCE-EEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCC-E
T ss_pred CCCceEEEccccCCCE-EEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCC-E
Confidence 35679999995 54 4444 333899999987776542 222345689999999999 4
Q ss_pred EEEECC----C-eEEEEEccCCCccccceeecccccCEEEEEEec-CCCcEEEEEEeCCCcEEEEE-cCCceEEEe-eC-
Q 001343 422 GVAFTK----H-LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EG- 492 (1096)
Q Consensus 422 ~s~~~d----g-~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~- 492 (1096)
.++... . .+...+...+.... ..+. .......+++.| ++. +.++-..++.|+.+| .++.....+ ..
T Consensus 196 yVad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~ 270 (433)
T 4hw6_A 196 VVVDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMD 270 (433)
T ss_dssp EEEECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECS
T ss_pred EEEcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccC
Confidence 444432 1 23333333221100 0111 234456788999 565 556666678899999 557652332 21
Q ss_pred CCCCeEEEEeeecCCCc-EEEEEECCCeEEEEEcCCCCe----eeEEeCC---------------CCcEEEEEE------
Q 001343 493 HEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGS----RVDYDAP---------------GHWCTTMLY------ 546 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~---------------~~~i~~l~~------ 546 (1096)
....-..+++++ +++ ++++-...+.|+.++++.... ...+... -.....+++
T Consensus 271 ~~~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y 348 (433)
T 4hw6_A 271 TKGSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAY 348 (433)
T ss_dssp CCSSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGG
T ss_pred CCCCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccc
Confidence 122234688866 556 444555678999988763211 1122111 123567888
Q ss_pred ---cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC--------c---------cceEEEEEe-CCCCEEEEEEc
Q 001343 547 ---SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--------K---------KSNGVVQFD-TTQNHFLAVGE 605 (1096)
Q Consensus 547 ---s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--------~---------~~i~~~~~~-~~~~~l~~~~~ 605 (1096)
.++|.+.++-.. .+.|+.++. +|... ++.+.. . .....++++ +++..+++=..
T Consensus 349 ~~dd~~g~lyvaD~~----n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 349 AGEEDEYDFYFCDRD----SHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp TTSSCCEEEEEEETT----TTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred cccCCCCcEEEEECC----CCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 666665555432 778888885 55433 333211 0 124567888 44444444445
Q ss_pred CCeEEEEeCC
Q 001343 606 DSQIKFWDMD 615 (1096)
Q Consensus 606 dg~i~iwd~~ 615 (1096)
++.|+.++++
T Consensus 423 n~rIr~i~~e 432 (433)
T 4hw6_A 423 NHRVRKIAPE 432 (433)
T ss_dssp GTEEEEEEEC
T ss_pred CCEEEEEecC
Confidence 6677776653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0096 Score=66.70 Aligned_cols=155 Identities=10% Similarity=0.074 Sum_probs=94.2
Q ss_pred CceEEEEEcC-CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 345 STVISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 345 ~~V~~v~fsp-~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
.....++++| ++..++++ ...+.|+.+|..++.... +.........|+|+++|++|++
T Consensus 137 ~~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp SCCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred CCCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence 3568899998 34434444 334889999987765432 1223456889999999997766
Q ss_pred EECC-C----eEEEEEccCCCccccceeecccccCEEEEEEec-CCCcEEEEEEeCCCcEEEEEcCCceEEEe-eC-CCC
Q 001343 424 AFTK-H----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWELSGRKLFNF-EG-HEA 495 (1096)
Q Consensus 424 ~~~d-g----~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~-~~~ 495 (1096)
+... + .+.+++.. +..... ..+. .......++++| ++. ++++-..++.|..++..+.....+ .. ...
T Consensus 196 ad~~~~~~~~~v~~~~~~-g~~~~~-~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTRE-SGFKVI-TELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EECCSCTTSEEEEEEEGG-GTSCSE-EEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EeCCCCcccceEEEEeCC-Cceeee-eeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 6542 1 34434433 322210 1222 123467788999 565 666666788999999444433222 21 223
Q ss_pred CeEEEEeeecCCCcE-EEEEECCCeEEEEEcCC
Q 001343 496 PVYSICPHHKENIQF-IFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~ 527 (1096)
....+++++ ++++ +++-...+.|..++.+.
T Consensus 271 ~P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 271 WEFHIQFHP--SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred cceeEEEcC--CCCEEEEEECCCCEEEEEeCCc
Confidence 467888876 5564 45555678899988764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.029 Score=67.43 Aligned_cols=212 Identities=11% Similarity=0.002 Sum_probs=129.4
Q ss_pred CCCCEEEEEEcCCCCEEEEE-ECCCeEEEEEccCCCcc-ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc
Q 001343 405 VPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~-~~dg~i~vwd~~~~~~~-~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 482 (1096)
....+..|+|++.+..|... ...+.|+.+++...... .....+.........|++.+.+.. +.++-...+.|.+.+.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 34567899999966655544 45578998988753211 011123334456778999988764 5566667889999997
Q ss_pred CCceEEEee-CCCCCeEEEEeeecCCCcEEEEEE-CC-CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 483 SGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTA-ID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 483 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
+|.....+. ........|++.|.. ..|+... .. +.|...+++...........-.....|++++.+..|+.+-.
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~~--g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~- 577 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS- 577 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET-
T ss_pred CCCeEEEEEeCCCCCcceEEEecCC--CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC-
Confidence 776655553 334457889987642 3444444 33 77888888755544444444457899999988888887643
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCc-cceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEee
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 624 (1096)
+...|...++........+..... .....+++. +..|+.+. ..+.|...+..+++.+..+.
T Consensus 578 --~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 --KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp --TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred --CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 367899999865544444332111 123345543 33444443 56777777777766555553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0092 Score=62.82 Aligned_cols=185 Identities=12% Similarity=0.191 Sum_probs=120.5
Q ss_pred EEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecC--CCc---EEEEEE-C--CCeEEEEEcCCCC-eeeEEeC-
Q 001343 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE--NIQ---FIFSTA-I--DGKIKAWLYDTMG-SRVDYDA- 536 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~---~l~s~~-~--dg~i~iwd~~~~~-~~~~~~~- 536 (1096)
+++.....+-+.+||.+|+.+..+.. +.++.+.+-+.- .|. ++++.. . +++|++|+++... .+.....
T Consensus 42 ~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 56666778899999999999998864 567777765521 111 233333 3 5799999885222 2333311
Q ss_pred -----CC-CcEEEEEE--cCC-CC-EEEEEeeccCCCCeEEEEeCC-------CCeeeEEEcCcCccceEEEEEeCCCCE
Q 001343 537 -----PG-HWCTTMLY--SAD-GS-RLFSCGTSKDGDSFLVEWNES-------EGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (1096)
Q Consensus 537 -----~~-~~i~~l~~--s~~-~~-~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~ 599 (1096)
.. ..+..+++ ++. ++ ++++... ++.+..|++. +.+.+++|.... .+..|...+....
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~ 193 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGR 193 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCe
Confidence 11 45667777 774 44 4555544 7888888872 446778877654 5667888898899
Q ss_pred EEEEEcCCeEEEEeCC-----CCeEEEEeecCCCCCCccEEEE--eCCCC-EEEEEE-CCCcEEEEEcC
Q 001343 600 FLAVGEDSQIKFWDMD-----NVNILTSTDAEGGLPNLPRLRF--SKEGN-LLAVTT-ADNGFKILANA 659 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~~~~-~dg~i~iwd~~ 659 (1096)
|+.+-++..|..++.+ +++.+..+....-...+..|++ .++++ +|++++ .+.++.+||..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999999877777755 3455555433222225777887 45555 555555 57799999986
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.014 Score=65.44 Aligned_cols=244 Identities=10% Similarity=0.109 Sum_probs=141.2
Q ss_pred CEEEEEEcC-CCCEEEEEEC-CCeEEEEEccCCCccccceee-cccccCEEEEEE-------ecCCCcEEEEEEeCCC--
Q 001343 408 SVSRVAWSP-DGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAF-------AYPNKLLCVVTCGDDK-- 475 (1096)
Q Consensus 408 ~V~~l~~sp-d~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~l-~~h~~~v~~l~~-------s~d~~~~~l~s~s~d~-- 475 (1096)
....|+|+| ++..|.++.. .+.|++.|.+++.... +... .........++| ++++. .|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~--~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAE--YMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTC--EEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCC--EEEEEeCCCCC
Confidence 477899999 4555555544 4678888988754432 1111 112335899999 99998 455444433
Q ss_pred -----cEEEEE-cC-CceE-----EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC-------CCCe------
Q 001343 476 -----LIKVWE-LS-GRKL-----FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-------TMGS------ 530 (1096)
Q Consensus 476 -----~i~iwd-~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~------ 530 (1096)
.|.+.+ .. |... ..+.... ....++++|. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366776 32 2321 2222111 2346666653 34566667788899999987 4443
Q ss_pred -----e-eEEe-CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC--CCCee--eEEEcCc---Cc-----------
Q 001343 531 -----R-VDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTI--KRTYAGF---RK----------- 585 (1096)
Q Consensus 531 -----~-~~~~-~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~--~~~~~--~~~~~~~---~~----------- 585 (1096)
. ..+. ........++|+|+|+.|+.+.. ..+.|+.++. ..+.. ...+.+. .+
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 1122 22345689999999997666543 3778888554 33332 1223221 00
Q ss_pred cceE-EEEEe-------CCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC----------------------CCCCccEE
Q 001343 586 KSNG-VVQFD-------TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG----------------------GLPNLPRL 635 (1096)
Q Consensus 586 ~~i~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~~ 635 (1096)
.... .++.. +++.++++=...+.|+.++ .++. +.++.+.. .......|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 0122 45554 4555555556778999998 4554 33443221 01235678
Q ss_pred EEeCC-CCEEEEEECCCcEEEEEcCCC
Q 001343 636 RFSKE-GNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 636 ~~s~~-~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++++ +.++++-...+.|+.+++...
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 99986 666666666778888887554
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.053 Score=58.07 Aligned_cols=238 Identities=13% Similarity=0.140 Sum_probs=149.0
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCC
Q 001343 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg 428 (1096)
+.-.+|..+ ++|.=. ..++.|+|+++.+.+..+. ....|..=.|-.+ +.|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~--------------------~~e~VvfWkWis~-~~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISL-NTVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEEEET-TEEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhccee--------------------cCCCceEEEecCC-CeEEEEc-CC
Confidence 455788887 677653 7899999999988775421 1234555566533 4555554 45
Q ss_pred eEEEEEccCCCccccceeeccc----ccCEEEEEEecCCCcEEEEEEe------CCCcEEEEEcCCceEEEeeCCCCCeE
Q 001343 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h----~~~v~~l~~s~d~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~~~~v~ 498 (1096)
.|+-|++++...... .+..| ...|..-..+++.+. ++++|- -.|.+.+|..+.+.-+.+.||.+...
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeeccccccchheeeeeeeE
Confidence 899999976433322 23223 346777788888886 333332 24788999977777788888876655
Q ss_pred EEEeeecCC-CcEEEEEECC---CeEEEEEcCCC---Ce-----eeEEe----CCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 499 SICPHHKEN-IQFIFSTAID---GKIKAWLYDTM---GS-----RVDYD----APGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 499 ~~~~~~~~~-~~~l~s~~~d---g~i~iwd~~~~---~~-----~~~~~----~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+.+..... ...++.+... +.+++.++... .. ...+. ...+-..++.+|+....++..+.
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 554421111 1234444332 78999988643 11 11111 12335678888888888888876
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
-|.+++||++++.++..-+-..+ .+...+......-++.....|.|.-..++...
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred CceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 99999999999999877665444 55555555555555665666666655555443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.038 Score=61.80 Aligned_cols=249 Identities=13% Similarity=0.114 Sum_probs=137.9
Q ss_pred ceEEEEEcCC-CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE-------cCC
Q 001343 346 TVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-------SPD 417 (1096)
Q Consensus 346 ~V~~v~fsp~-g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-------spd 417 (1096)
....|+|+|. +..|+++-...+.|++.|..++....... .-...-.....|+| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~----------------~~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLN----------------INTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEEC----------------CTTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEc----------------cCccccCCCcEEEEeecccccCCC
Confidence 4689999993 44466665555788899988766542100 00112346899999 999
Q ss_pred CCEEEEEECCC-------eEEEEEccC-CCccc-c-ceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c----
Q 001343 418 GNYVGVAFTKH-------LIQLYSYAG-SNDLR-Q-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---- 482 (1096)
Q Consensus 418 ~~~l~s~~~dg-------~i~vwd~~~-~~~~~-~-~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~---- 482 (1096)
|++|+++...+ .|.+++... +.... . ...+.. -.....++++|++.. ++++-..++.|..+| .
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99777776543 256665443 22211 0 011221 123457888996553 566777788899999 5
Q ss_pred ---CCce-----------EEE-ee-CCCCCeEEEEeeecCCCcE-EEEEECCCeEEEEEcCCCCee----eEEeCC---C
Q 001343 483 ---SGRK-----------LFN-FE-GHEAPVYSICPHHKENIQF-IFSTAIDGKIKAWLYDTMGSR----VDYDAP---G 538 (1096)
Q Consensus 483 ---~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~----~~~~~~---~ 538 (1096)
++.. ... +. +.......++|+| ++.+ .++-+..+.|+.++.+..... ..+.+. .
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 4543 112 11 2233457899977 5564 445556788988776543211 122111 0
Q ss_pred ------------CcEE-EEEEc-------CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC--------------
Q 001343 539 ------------HWCT-TMLYS-------ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-------------- 584 (1096)
Q Consensus 539 ------------~~i~-~l~~s-------~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-------------- 584 (1096)
.... .++.. ++|.+.++-.. .+.|+.++ .+|. +.++.+..
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~----N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL----NFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG----GTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC----CCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence 1234 44554 34544444332 77899888 4553 44443321
Q ss_pred c---------cceEEEEEeCC-CCEEEEEEcCCeEEEEeCCCCeEE
Q 001343 585 K---------KSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 585 ~---------~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
+ .....++++++ +..+++=..+..|+.+++......
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 1 12445777775 444444445667777777654433
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.022 Score=59.48 Aligned_cols=163 Identities=9% Similarity=0.023 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccc--ccCCCCEEEEEE---cCCCCEE
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF--KDVPISVSRVAW---SPDGNYV 421 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~---spd~~~l 421 (1096)
-.+++|++....++++.-..++|..|+...+..... .+ . .+. ......+..|.| .|+++++
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~------------~-~~s~~g~~~~~~sGl~~~~~D~~grL~ 80 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI------------D-GASSNGDGEQQMSGLSLLTHDNSKRLF 80 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC------------T-TTCCSSCCSEEEEEEEESSSSSCCEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec------------C-CccccCCCcceeeEEEEeccCCCCcEE
Confidence 467889886664565555789999999876543321 00 0 000 011224689999 6888887
Q ss_pred EEEE-------------CCCeEEEEEcc---CCCccccceeecccc-----------cCEEEEEEecCCCcEEEEEEeCC
Q 001343 422 GVAF-------------TKHLIQLYSYA---GSNDLRQHSQIDAHV-----------GAVNDLAFAYPNKLLCVVTCGDD 474 (1096)
Q Consensus 422 ~s~~-------------~dg~i~vwd~~---~~~~~~~~~~l~~h~-----------~~v~~l~~s~d~~~~~l~s~s~d 474 (1096)
++.. .+..|..||+. +++.+... .|.... .....++..++|+ ..++++.-
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~ 157 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALG 157 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEES
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCC
Confidence 7644 25789999999 77655422 232211 3588999999999 78888888
Q ss_pred -CcEEEEEcCCceEEEeeC------CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC
Q 001343 475 -KLIKVWELSGRKLFNFEG------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1096)
Q Consensus 475 -~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (1096)
+.|...+..|+.+..+.. .....+.|+++| ++..|++....|.+..+|+...
T Consensus 158 ~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 158 MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 888888877765544321 112366899977 5677777766999999998843
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.052 Score=57.16 Aligned_cols=199 Identities=12% Similarity=0.195 Sum_probs=124.7
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC----CCc--EEEEEEeC--CCcEEEEEc--CCce
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP----NKL--LCVVTCGD--DKLIKVWEL--SGRK 486 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d----~~~--~~l~s~s~--d~~i~iwd~--~~~~ 486 (1096)
....++....++-+.+||+ .|+.+.. +.. +.++.+..-|+ |+. +.+++.-. +++|.+|+. ....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~---~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHS---YNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEE---ECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEE---ccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 3455665667789999999 6666653 332 56777766552 221 13444444 689999962 3334
Q ss_pred EEEeeC------CC-CCeEEEEee--ecCCCcEEEEEECCCeEEEEEcCC-------CCeeeEEeCCCCcEEEEEEcCCC
Q 001343 487 LFNFEG------HE-APVYSICPH--HKENIQFIFSTAIDGKIKAWLYDT-------MGSRVDYDAPGHWCTTMLYSADG 550 (1096)
Q Consensus 487 ~~~~~~------~~-~~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~s~~~ 550 (1096)
+..+.. .. ..+..+|+. +.....++++...+|.+..|++.. .+.+..+... ..+-.+++.+..
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~ 191 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEY 191 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTT
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCC
Confidence 555522 11 456677773 332224788899999999998842 2223444443 468888998888
Q ss_pred CEEEEEeeccCCCCeEEEEeCC-----CCeeeEEEc-CcCccceEEEEE--eCCCC-EEEEEE-cCCeEEEEeCC-CCeE
Q 001343 551 SRLFSCGTSKDGDSFLVEWNES-----EGTIKRTYA-GFRKKSNGVVQF--DTTQN-HFLAVG-EDSQIKFWDMD-NVNI 619 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~-----~~~~~~~~~-~~~~~~i~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~-~~~~ 619 (1096)
..|+.+-. +..|..++.+ +++.+..+. ++-...+..+++ .++++ ++++++ .+.++.+||.. +.+.
T Consensus 192 g~Lyv~eE----d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~ 267 (355)
T 3amr_A 192 GRLYIAEE----DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY 267 (355)
T ss_dssp TEEEEEET----TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred CeEEEecc----cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence 88988865 5567777754 345665553 222225666776 45555 666666 67799999996 6677
Q ss_pred EEEeecC
Q 001343 620 LTSTDAE 626 (1096)
Q Consensus 620 ~~~~~~~ 626 (1096)
+..+...
T Consensus 268 vg~f~Ig 274 (355)
T 3amr_A 268 VADFRIT 274 (355)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7766543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0034 Score=75.17 Aligned_cols=201 Identities=8% Similarity=-0.023 Sum_probs=117.4
Q ss_pred CCeeeeeecCCCcEEEEec--CCeEEEEEccc----ceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccc
Q 001343 832 EAVPCIALSKNDSYVMSAT--GGKISLFNMMT----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~----~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~ 905 (1096)
..+..++|++.+..|+.+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3466799998877777776 47899999865 22222222222345678887524555565566788988887754
Q ss_pred eeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-E-e-cceEEEEEcccceeccccccCCCCCCCceEEE
Q 001343 906 ELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V-H-ETQLAIYDASKMERIRQWTPQDALSAPISCAV 982 (1096)
Q Consensus 906 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~ 982 (1096)
. ......... .....+++.|++.+|+. . . .+.|.++++.... ...+.... ......|+
T Consensus 486 ~---------------~~~l~~~~~-~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~--l~~PnGla 546 (699)
T 1n7d_A 486 K---------------RKTLFREQG-SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTEN--IQWPNGIT 546 (699)
T ss_dssp C---------------EEEECCCSS-CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSS--CSSCCCEE
T ss_pred c---------------eEEEEeCCC-CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCC--CCCccEEE
Confidence 3 001111111 14577899987665555 2 2 3678877775332 22222211 34567899
Q ss_pred EeeCCcEEEEE-ecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 983 YSCNSQLVFAT-FCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 983 ~s~dg~~la~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
|+|++..|+.+ ...+.|.+++++.......+.... . .-.+..|++.. +.++++-...+.|..++..+
T Consensus 547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~----~------~~~P~glavd~--~~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK----R------LAHPFSLAVFE--DKVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp ECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS----S------CSSCCCCEEET--TEEEEECSTTTCEEEEETTT
T ss_pred EeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC----c------CCCceEeEEEC--CEEEEEeCCCCeEEEEEccC
Confidence 99986655544 456789999987544333322111 0 11122355544 45666666778999999877
Q ss_pred CC
Q 001343 1062 SE 1063 (1096)
Q Consensus 1062 ~~ 1063 (1096)
|+
T Consensus 615 G~ 616 (699)
T 1n7d_A 615 GS 616 (699)
T ss_dssp EE
T ss_pred CC
Confidence 66
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.038 Score=57.67 Aligned_cols=212 Identities=10% Similarity=0.074 Sum_probs=123.2
Q ss_pred CcccEEEEEEecCCceEEEee-cCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCC----CcCCCeeee
Q 001343 763 TSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV----NLEEAVPCI 837 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~-~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~----~~~~~v~~l 837 (1096)
..-...++.|.+....+..++ ..++|..|+...+. .....+++. .....+..+
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~----------------------~~~~~~~~~s~~g~~~~~~sGl 68 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS----------------------HFNVVIDGASSNGDGEQQMSGL 68 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC----------------------EEEECCTTTCCSSCCSEEEEEE
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe----------------------EEEEecCCccccCCCcceeeEE
Confidence 444556788988655566666 58999988863211 000011110 012245788
Q ss_pred ee---cCCCcEEEEec--------------CCeEEEEEcc---cceEEEeec--C-----------CCCCeeEEEEecCC
Q 001343 838 AL---SKNDSYVMSAT--------------GGKISLFNMM---TFKVMTTFM--S-----------PPPASTFLAFHPQD 884 (1096)
Q Consensus 838 ~~---s~dg~~la~~~--------------dg~v~iwd~~---~~~~~~~~~--~-----------h~~~i~~l~~s~~d 884 (1096)
.+ .|+|+++++.. +..|..||+. +++.+.... . -......++..+ +
T Consensus 69 ~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~ 147 (334)
T 2p9w_A 69 SLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-D 147 (334)
T ss_dssp EESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-T
T ss_pred EEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-C
Confidence 99 68898888643 3569999998 777654432 1 112477899999 8
Q ss_pred CcEEEEeeCC-CeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccc
Q 001343 885 NNIIAIGTED-STIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKM 962 (1096)
Q Consensus 885 ~~~l~s~~~d-g~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~ 962 (1096)
|+..++++.- +.|...+........|..+. .........+.++++|||..|++ ...+.|..+|+.+.
T Consensus 148 GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~-----------~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 148 GNSYVAFALGMPAIARVSADGKTVSTFAWES-----------GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SCEEEEEEESSCEEEEECTTSCCEEEEEECC-----------CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CCEEEeCCCCCCeEEEEeCCCCEEeeeeecC-----------CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 9999988887 76555555443323332211 11111125789999999998888 34899999998843
Q ss_pred ee--ccccc-cCCCCCCCceEE-EEeeCCcE-EEEEecCCcEEEEecCCCc
Q 001343 963 ER--IRQWT-PQDALSAPISCA-VYSCNSQL-VFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 963 ~~--~~~~~-~~~~~~~~i~~l-~~s~dg~~-la~~~~dg~i~vwd~~~~~ 1008 (1096)
.. +..-. +....-.....+ ..-.+|+. |++....+.+.+.+.+..+
T Consensus 217 v~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 217 YAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp SCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTS
T ss_pred cceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCCcc
Confidence 22 11100 110001223333 33457888 4444456666666655543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.002 Score=77.09 Aligned_cols=225 Identities=8% Similarity=0.000 Sum_probs=128.8
Q ss_pred CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC----ceE-EEeeCCCCCeEEEE
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG----RKL-FNFEGHEAPVYSIC 501 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~----~~~-~~~~~~~~~v~~~~ 501 (1096)
.+.|+..++.+.+... +......+..++|.+.+.. ++++-...+.|+.++..+ ... ..+.........++
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 4578888887654333 1122345678999987763 344444567899998443 221 11211112345667
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
+.+. .+.++++-...+.|.+++++.................+++.|.+.+|+.+.. ...+.|..+++.... ...+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~--~~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC--SSSCCEEBCCSSSCC-CCEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc--CCCCeEEEEeCCCCC-eeEEE
Confidence 6543 3345555566788999988755443333333345678899997766665432 113678777765332 22222
Q ss_pred CcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
...-.....++++|++..|+.+. ..+.|..+++........+...........|++..+ .++++....+.|..++..+
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 11112345699998766655554 667899999975444433332222224456777654 4555556678899999877
Q ss_pred C
Q 001343 661 G 661 (1096)
Q Consensus 661 ~ 661 (1096)
+
T Consensus 615 G 615 (699)
T 1n7d_A 615 G 615 (699)
T ss_dssp E
T ss_pred C
Confidence 6
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00069 Score=62.51 Aligned_cols=78 Identities=13% Similarity=0.262 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-------chHHHHHHH
Q 001343 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1096)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1096)
++|+|+.|.|||||..|+.++|..|+.+.-.-+...+.+.+++|..+....+..+++....++. +..+-..|+
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~ 131 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 131 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHH
Confidence 8999999999999999999999999998776666677899999999999888888777777765 344445666
Q ss_pred HHHHh
Q 001343 145 IELKK 149 (1096)
Q Consensus 145 ~~l~~ 149 (1096)
..|++
T Consensus 132 ~fL~~ 136 (156)
T 2nxp_A 132 RHLQE 136 (156)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66655
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.48 Score=50.91 Aligned_cols=260 Identities=8% Similarity=0.121 Sum_probs=157.7
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccccee
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ 446 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 446 (1096)
..|.|-|+.++.....+++ .-.+.-.+|..+.||.-. ..++.|+|+++.+.++..
T Consensus 48 ~~vvIiDl~~~~~~~rrpi----------------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~-- 102 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-- 102 (494)
T ss_dssp CEEEEEETTSTTSCEEEEC----------------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE--
T ss_pred CeEEEEECCCCCcceeccc----------------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce--
Confidence 4788889888765533211 112345577777777654 579999999997766532
Q ss_pred ecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc--CCceEEEeeCCCC--CeEEEEeeecCCCcEEEEEE-------
Q 001343 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL--SGRKLFNFEGHEA--PVYSICPHHKENIQFIFSTA------- 515 (1096)
Q Consensus 447 l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~--~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~------- 515 (1096)
. ....|..=.|-.+.. |+-.+ +..|+-|+. +..+.+.+..|.. ...-+.+..+.+.++++..+
T Consensus 103 -~-~~e~VvfWkWis~~~---l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 176 (494)
T 1bpo_A 103 -T-MTDDVTFWKWISLNT---VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (494)
T ss_dssp -E-CSSCCCEEEEEETTE---EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred -e-cCCCceEEEecCCCe---EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence 1 235677777776553 44333 678999994 4467777765532 22233333355667766443
Q ss_pred CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC---CEEEEEeeccCCCCeEEEEeCCCC---e------eeEEEcC-
Q 001343 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG---SRLFSCGTSKDGDSFLVEWNESEG---T------IKRTYAG- 582 (1096)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~---~~l~~~~~~~~~~~~i~iwd~~~~---~------~~~~~~~- 582 (1096)
..|.+.+|..+.... ..+.+|......+.+..+. ..++.+.... ..+.+.+.++... . .+..+-.
T Consensus 177 v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~-~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp 254 (494)
T 1bpo_A 177 VVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ-AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 254 (494)
T ss_dssp EEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECST-TCCEEEEEECSCCCTTCCCCCCEEEECCCCT
T ss_pred ccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecC-CCcEEEEEEcCCCccCCCCccceeeeeeCCc
Confidence 247788998775432 3344444333333332111 1233333222 2478888888532 1 1111111
Q ss_pred -cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 583 -FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 583 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
......-++..++....++..+.-|.|++||+.++.++..-+.... .|...+.+....=++.....|.|.--.++..
T Consensus 255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 1122344588888889999999999999999999999988876654 6666666666556666668888777776655
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.1 Score=55.77 Aligned_cols=197 Identities=11% Similarity=0.067 Sum_probs=112.1
Q ss_pred CEEEEEEcCCCCEEEEEE------------CCCeEEEEEccCCC-ccccceeecc-----cccCEEEEEEec--CCCcEE
Q 001343 408 SVSRVAWSPDGNYVGVAF------------TKHLIQLYSYAGSN-DLRQHSQIDA-----HVGAVNDLAFAY--PNKLLC 467 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~------------~dg~i~vwd~~~~~-~~~~~~~l~~-----h~~~v~~l~~s~--d~~~~~ 467 (1096)
....++..|+|..+++++ .+|.|.++|.++.. ....+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 455677788876655552 68999999987432 12222 2322 334677888877 354313
Q ss_pred EEEEeC--CCcEEEEE--cCCceE---EEeeCC-CCCeEEEEeeecCCCcEEEEEE-----------------CCCeEEE
Q 001343 468 VVTCGD--DKLIKVWE--LSGRKL---FNFEGH-EAPVYSICPHHKENIQFIFSTA-----------------IDGKIKA 522 (1096)
Q Consensus 468 l~s~s~--d~~i~iwd--~~~~~~---~~~~~~-~~~v~~~~~~~~~~~~~l~s~~-----------------~dg~i~i 522 (1096)
+++-.. +.+|.+|+ ..+... ..+.+. -...+.+.+.+ +|.+.++.. ..|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 343333 56788888 333332 333332 23467888866 556666543 1244444
Q ss_pred EEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC-Cee--eEEEcCcCccceEEEEEeC-CCC
Q 001343 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQN 598 (1096)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~i~~~~~~~-~~~ 598 (1096)
+|. ++. ......-...+.++|+||++.++.+.. ..+.|+.|++.. +.. .+.+.. ......+++++ +|+
T Consensus 208 ~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 208 YSP--NDV-RVVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD 279 (355)
T ss_dssp ECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred EEC--CeE-EEeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence 443 322 222222335789999999999888764 267899999853 332 233421 22556688888 588
Q ss_pred EEEEEEcC-CeEEEEeCC
Q 001343 599 HFLAVGED-SQIKFWDMD 615 (1096)
Q Consensus 599 ~l~~~~~d-g~i~iwd~~ 615 (1096)
+.+++..+ +.|..|+..
T Consensus 280 lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEESCHHHHHSCCTT
T ss_pred EEEEecCCceEEEEECCC
Confidence 77766533 344445543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.089 Score=56.96 Aligned_cols=229 Identities=12% Similarity=0.039 Sum_probs=115.9
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceee---cccccCEEEEEEecC---CCcEEEEEEeCC-----C
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYP---NKLLCVVTCGDD-----K 475 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l---~~h~~~v~~l~~s~d---~~~~~l~s~s~d-----~ 475 (1096)
.....++|.|||++++ +..+|.|.+++ +++. ..+..+ .........|+|+|+ +.. +.++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence 3567999999999555 45679999998 3331 111111 122456899999998 553 33333322 5
Q ss_pred cEEEEE-cCCc-----eE-EEee---CCCCCeEEEEeeecCCCcEEEEEEC-------------CCeEEEEEcCCC----
Q 001343 476 LIKVWE-LSGR-----KL-FNFE---GHEAPVYSICPHHKENIQFIFSTAI-------------DGKIKAWLYDTM---- 528 (1096)
Q Consensus 476 ~i~iwd-~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~---- 528 (1096)
.|..++ ..+. .+ ..+. +.......++|.+ +|.+.++.+. .|.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP--DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT--TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC--CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 777888 4331 11 1132 1111235778865 6655555432 145555554420
Q ss_pred --------CeeeEEeCCCCcEEEEEEcC-CCCEEEEEeeccCC-----CCeEEEEeCCC----------------CeeeE
Q 001343 529 --------GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDG-----DSFLVEWNESE----------------GTIKR 578 (1096)
Q Consensus 529 --------~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~-----~~~i~iwd~~~----------------~~~~~ 578 (1096)
.....+.........++|+| ++...++ ....+. ...|.+..... ..++.
T Consensus 184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~-d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSS-EHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEE-EECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEE-EcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 01111111123467789999 5554444 321111 11243332111 01222
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE------EEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI------LTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
.+..+. ....++| .+|..+++....+.|...+++.... ...+-. ....+..+++.|||.++++..
T Consensus 263 ~~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 222111 2345666 3555555555667787777654321 112211 123788999999997776654
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00033 Score=62.85 Aligned_cols=77 Identities=12% Similarity=0.219 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-------chHHHHHHH
Q 001343 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1096)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1096)
++|+|+.|.||||+..|..++|..|+.+.-.-+... .+.+++|..+....++.+++....++. ++.+-..|+
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~ 111 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 111 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 999999999999999999999999999877767666 899999999998888877776665543 344445666
Q ss_pred HHHHh
Q 001343 145 IELKK 149 (1096)
Q Consensus 145 ~~l~~ 149 (1096)
..|++
T Consensus 112 ~fL~~ 116 (138)
T 2j4b_A 112 NFLEE 116 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.29 Score=52.89 Aligned_cols=232 Identities=11% Similarity=0.001 Sum_probs=119.3
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceee---cccccCEEEEEEecC---CCcEEEEEEeC---C---
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYP---NKLLCVVTCGD---D--- 474 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l---~~h~~~v~~l~~s~d---~~~~~l~s~s~---d--- 474 (1096)
.....|+|.|||++++ +..+|.|++++ .+++ ..+..+ .........|+|+|+ +.. +.++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCCc
Confidence 3578899999998554 55669999997 3443 211111 122356899999998 553 3333332 3
Q ss_pred -CcEEEEEcCCc--------eE-EEeeC-CCCCeEEEEeeecCCCcEEEEEEC-------------CCeEEEEEcCCCC-
Q 001343 475 -KLIKVWELSGR--------KL-FNFEG-HEAPVYSICPHHKENIQFIFSTAI-------------DGKIKAWLYDTMG- 529 (1096)
Q Consensus 475 -~~i~iwd~~~~--------~~-~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~- 529 (1096)
..|..|+.++. .+ ..+.. .......++|.| +|.+.++.+. .|.|.-++.+..-
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p--DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP--DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT--TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC--CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 56777773222 11 11221 111235677765 6666655432 2455555543210
Q ss_pred ------eeeEEeCCCCcEEEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCC--------C--------eeeEEEcCcCcc
Q 001343 530 ------SRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE--------G--------TIKRTYAGFRKK 586 (1096)
Q Consensus 530 ------~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~--------~--------~~~~~~~~~~~~ 586 (1096)
....+.........++|+| +|+..++ -...+....|.+..... + ..+..+.. ...
T Consensus 182 ~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~-d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~-~~~ 259 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGHRNPQGIDWHRASGVMVAT-EHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS-ETW 259 (354)
T ss_dssp TTSSSTTCCEEEECCSCCCEEEECTTTCCEEEE-ECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT-CCC
T ss_pred CCCCCCCCcEEEEccCCcceEEEeCCCCCEEEE-ecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC-CCc
Confidence 0111111122356899999 5654444 32211112343332110 0 12222211 111
Q ss_pred ceEEEEEe-------CCCCEEEEEEcCCeEEEEeCCCC-eEE--EEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 587 SNGVVQFD-------TTQNHFLAVGEDSQIKFWDMDNV-NIL--TSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 587 ~i~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
....++|. .+|.++++....+.|...++... ... ..+. ......+..+++.|||.++++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence 45567773 45656665556778888888753 332 1221 11133788999999997766654
|
| >2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0003 Score=63.79 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=60.4
Q ss_pred ccchhhHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-------chHH
Q 001343 67 RYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTA 139 (1096)
Q Consensus 67 ~~~~~~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~ 139 (1096)
++.+ ++|+||.|.||||+..| .++|..|+.+.-.-+...+.+.+++|..+....++.+++....++. ++.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4344 99999999999999999 9999999998766665556788888888888777777776666644 3444
Q ss_pred HHHHHHHHHh
Q 001343 140 RGIMLIELKK 149 (1096)
Q Consensus 140 r~~l~~~l~~ 149 (1096)
-..|+..|++
T Consensus 109 ~~lL~~fL~~ 118 (148)
T 2j49_A 109 LNLLLYFLNE 118 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555544
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.22 Score=53.77 Aligned_cols=230 Identities=16% Similarity=0.128 Sum_probs=119.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCC-eeecccceeecccccCccccccccccCCCCEEEEEEcCC---CCE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNY 420 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---~~~ 420 (1096)
...+.++|.|+|+ ++++ ..+|.|.+++ .+++ .+.. + . +..........|+|+|+ +..
T Consensus 29 ~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~~~~~~--~------------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGKKLVAS--F------------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp SCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCEEEEEE--C------------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCceEeec--c------------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 4578999999998 5655 4679999997 3443 1110 0 0 11223456889999998 555
Q ss_pred EEEEEC----C----CeEEEEEccCCC-cc---ccc-eeec-ccccCEEEEEEecCCCcEEEEEEeC-------------
Q 001343 421 VGVAFT----K----HLIQLYSYAGSN-DL---RQH-SQID-AHVGAVNDLAFAYPNKLLCVVTCGD------------- 473 (1096)
Q Consensus 421 l~s~~~----d----g~i~vwd~~~~~-~~---~~~-~~l~-~h~~~v~~l~~s~d~~~~~l~s~s~------------- 473 (1096)
|.++.. + +.|..|+...+. .+ +.+ ..+. +.......++|.|||. +.++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 554433 2 567778776541 11 111 0121 1111246799999997 5555332
Q ss_pred CCcEEEEEcCCc----------eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC---eEEEEEcCCCC-----------
Q 001343 474 DKLIKVWELSGR----------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMG----------- 529 (1096)
Q Consensus 474 d~~i~iwd~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~----------- 529 (1096)
.+.|.-.+.+|+ .+. -.++.. ...++|++. ++.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIW-SYGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA 242 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEE-EECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence 245555554443 122 233433 456778653 234443332211 12222 2111
Q ss_pred -------eeeEEeCCCCcEEEEEEc-------CCCCEEEEEeeccCCCCeEEEEeCCCC-eee--EEEcCcCccceEEEE
Q 001343 530 -------SRVDYDAPGHWCTTMLYS-------ADGSRLFSCGTSKDGDSFLVEWNESEG-TIK--RTYAGFRKKSNGVVQ 592 (1096)
Q Consensus 530 -------~~~~~~~~~~~i~~l~~s-------~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~i~~~~ 592 (1096)
....+.........++|. .+|.++++... .+.|...++... +.. ..+.......+..++
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~ 318 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVV 318 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccCCCCCeeEEE
Confidence 111221223357788884 45655555432 667888877643 322 223211122567788
Q ss_pred EeCCCCEEEEEE
Q 001343 593 FDTTQNHFLAVG 604 (1096)
Q Consensus 593 ~~~~~~~l~~~~ 604 (1096)
+.|+|..+++..
T Consensus 319 ~~pDG~lyv~~~ 330 (354)
T 3a9g_A 319 IDDDGGILISTS 330 (354)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 889886655543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.13 Score=55.69 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=62.5
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC---CCEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNYV 421 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---~~~l 421 (1096)
...+.++|.|+|+ ++++ ..+|.|.+++ +++.... .++ . ++.........|+|+|+ +.+|
T Consensus 31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~-----~~~-------~--v~~~g~~~p~gia~~pdf~~~g~l 92 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTY-----AEL-------S--VYHRGESGLLGLALHPRFPQEPYV 92 (352)
T ss_dssp SCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEE-----EEC-------C--CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred CCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEe-----ecc-------e--EeecCCCCceeEEECCCCCCCCEE
Confidence 3578999999998 5655 4679999998 4432110 000 0 12223457899999998 5555
Q ss_pred EEEEC-C-----CeEEEEEccCCCcc--ccce-eec---ccccCEEEEEEecCCCcEEEEEE
Q 001343 422 GVAFT-K-----HLIQLYSYAGSNDL--RQHS-QID---AHVGAVNDLAFAYPNKLLCVVTC 471 (1096)
Q Consensus 422 ~s~~~-d-----g~i~vwd~~~~~~~--~~~~-~l~---~h~~~v~~l~~s~d~~~~~l~s~ 471 (1096)
.++.. . +.|..|+...+..- +.+. .+. +.......++|.|||. +.++.
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 55433 2 57888887753211 1111 122 1111236899999997 55553
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.12 Score=54.49 Aligned_cols=229 Identities=10% Similarity=0.025 Sum_probs=112.7
Q ss_pred CCEEEEEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-----CcEEEEE-cCCceE
Q 001343 418 GNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGRKL 487 (1096)
Q Consensus 418 ~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~i~iwd-~~~~~~ 487 (1096)
+..++.|+.+ ..+..||..+.+-.. ...+......-..+. -++. +++.|+.+ ..+.+|| .+.+-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W- 89 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVY--MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQW- 89 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE--ETTE--EEEESCBCSSSBCCCEEEEETTTTEE-
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEE--ECCE--EEEEeCcCCCccccceEEECCCCCce-
Confidence 3455556543 357888887754221 111221111111222 2455 66667654 3588888 44432
Q ss_pred EEeeCC---CCCeEEEEeeecCCCcEEEEEECCC-----eEEEEEcCCCCeeeEEeCCCC-cEEEEEEcCCCCEEEEEee
Q 001343 488 FNFEGH---EAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 488 ~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~ 558 (1096)
..+... ...-..+.+ ++.+++.|+.++ .+.+||..+..-...-..... .-.+++. -+++.++.++.
T Consensus 90 ~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 164 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGY 164 (302)
T ss_dssp EEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCE
T ss_pred eeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCC
Confidence 222211 111112222 456777777654 466777765543322111111 1112222 25666666665
Q ss_pred ccCC---CCeEEEEeCCCCeeeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEEEEeecCCCC
Q 001343 559 SKDG---DSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 559 ~~~~---~~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
+... ...+.+||+.+.+-...-...... ....+.+ ++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-
Confidence 3321 356889999887654432211111 1222222 56667777653 4699999988765544322221
Q ss_pred CCccEEEEeCCCCEEEEEECCC-----cEEEEEcCCC
Q 001343 630 PNLPRLRFSKEGNLLAVTTADN-----GFKILANAIG 661 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 661 (1096)
.....+..-++.+++.|+.++ .+.+||+.+.
T Consensus 242 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 -RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred -cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222223677777777653 4788888765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.089 Score=55.62 Aligned_cols=230 Identities=12% Similarity=0.040 Sum_probs=114.9
Q ss_pred CCCEEEEEE-CC-----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-----CcEEEEE-cCC
Q 001343 417 DGNYVGVAF-TK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSG 484 (1096)
Q Consensus 417 d~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~i~iwd-~~~ 484 (1096)
++..++.|+ .+ ..+.+||..+++-.. ...+.........+ ..++. +++.|+.+ ..+.+|| .++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~--~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASV--SLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEE--EETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccEE--EECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 445666666 32 368889987754221 11122111111222 23455 66777654 4688999 555
Q ss_pred c---eEEE--eeCCCCCeEEEEeeecCCCcEEEEEECC-----CeEEEEEcCCCCeeeEEeCCCC--cEEEEEEcCCCCE
Q 001343 485 R---KLFN--FEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSR 552 (1096)
Q Consensus 485 ~---~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~~~ 552 (1096)
+ -... +......-..+.+ ++.+++.|+.+ ..+.+||..+.+-...-..... ....+. -+++.
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 162 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVI 162 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEE
Confidence 4 2211 1111111112222 45677777654 3577888776543332222211 112222 25666
Q ss_pred EEEEeeccC-CCCeEEEEeCCCCeeeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEEEEeec
Q 001343 553 LFSCGTSKD-GDSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 553 l~~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~ 625 (1096)
++.++.+.. ....+..||+.+.+-...-...... ....+.+ ++..++.|+.+ ..+.+||+.+.+....-..
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 240 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM 240 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC
Confidence 666654221 1356889999887654432211111 1122222 55666777653 4689999988776554332
Q ss_pred CCCCCCccEEEEeCCCCEEEEEECC-----CcEEEEEcCCC
Q 001343 626 EGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 661 (1096)
... .....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 241 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 241 TTP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 222 22222222366777777765 34677777654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.14 Score=54.00 Aligned_cols=193 Identities=10% Similarity=0.005 Sum_probs=95.5
Q ss_pred CCCEEEEEECC-----CeEEEEEccCCCc--cccceeecccccCEEEEEEecCCCcEEEEEEeCC-----CcEEEEE-cC
Q 001343 417 DGNYVGVAFTK-----HLIQLYSYAGSND--LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LS 483 (1096)
Q Consensus 417 d~~~l~s~~~d-----g~i~vwd~~~~~~--~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~i~iwd-~~ 483 (1096)
+++.++.|+.+ ..+.+||..+++. ......+.........+.+ +++ +++.|+.+ ..+.+|| .+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCCC
Confidence 56777777754 4688999887651 1111122211112222222 455 66666644 3588888 44
Q ss_pred CceEEEeeCCCCCe-EEEEeeecCCCcEEEEEECC-----CeEEEEEcCCCCeeeEEeCCCC--cEEEEEEcCCCCEEEE
Q 001343 484 GRKLFNFEGHEAPV-YSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFS 555 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~~~l~~ 555 (1096)
.+-...-....... .+++. . ++.+++.|+.+ ..+.+||..+..-...-..... ....+. -+++.++.
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~ 212 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVV-A--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVV 212 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEE-E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEE
T ss_pred CeEEECCCCCCCcccceEEE-E--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEE
Confidence 43222111111111 12222 1 45677777765 3577888776543332111111 112222 25566666
Q ss_pred EeeccCC-CCeEEEEeCCCCeeeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEE
Q 001343 556 CGTSKDG-DSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNIL 620 (1096)
Q Consensus 556 ~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 620 (1096)
++.+... ...+.+||+.+.+....-...... ....+.+ ++..++.|+.+ ..+.+||..+.+..
T Consensus 213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 6643221 357899999887654432211111 1222222 55666777654 35788888776543
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0021 Score=51.32 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHHHHHcChHHHHHHHHHhhCCCc
Q 001343 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFF 36 (1096)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~ 36 (1096)
|+....||+.||..||.|.||..||-+|++||++.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 778899999999999999999999999999998764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.22 Score=52.73 Aligned_cols=229 Identities=7% Similarity=0.003 Sum_probs=113.7
Q ss_pred EEEEEEC--CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC----CcEEEEE-cCCceEEEeeC
Q 001343 420 YVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLFNFEG 492 (1096)
Q Consensus 420 ~l~s~~~--dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d----~~i~iwd-~~~~~~~~~~~ 492 (1096)
.++.|+. ...+.+||..+++-.. ...+......-..+. -++. +++.|+.+ ..+.+|| .+++-. .+..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~-~~~~ 87 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWY-SKLG 87 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEE-EEEC
T ss_pred EEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEE-ECCC
Confidence 4455654 3578889988764221 111221111222222 2455 66777654 6788889 554332 2221
Q ss_pred C-CCCe-EEEEeeecCCCcEEEEEECC------CeEEEEEcCCCCeeeEEeCCCC-cEEEEEEcCCCCEEEEEeeccCC-
Q 001343 493 H-EAPV-YSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDG- 562 (1096)
Q Consensus 493 ~-~~~v-~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~~~~~- 562 (1096)
. .... .+++. . ++.+++.|+.+ ..+.+||..+..-...-..... .-.+++. -+++.++.++.....
T Consensus 88 ~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 88 PPTPRDSLAACA-A--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CSSCCBSCEEEE-E--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTT
T ss_pred CCccccceeEEE-E--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCC
Confidence 1 1111 11221 1 45677777765 4578888876543322111111 1112222 256666666643322
Q ss_pred ----CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 563 ----DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 563 ----~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
...+.+||+.+.+-...-.......-..++.. ++..++.|+.+ ..+.+||..+.+....-..........
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 242 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK 242 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee
Confidence 35688999988765443221111111122222 55666666543 468999998876544322222111122
Q ss_pred EEEEeCCCCEEEEEECC-----CcEEEEEcCCC
Q 001343 634 RLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 661 (1096)
.+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 2222 67788888754 45777887665
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.26 Score=52.07 Aligned_cols=193 Identities=11% Similarity=0.151 Sum_probs=103.0
Q ss_pred CCCcEEEEec-C----CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCC------CeEEEEeeccceeee
Q 001343 841 KNDSYVMSAT-G----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED------STIHIYNVRVDELCV 909 (1096)
Q Consensus 841 ~dg~~la~~~-d----g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~d------g~i~iw~~~~~~~~~ 909 (1096)
-++++++.|+ + ..+.+||..+.+....-..........+..- ++++++.|+.+ ..+.+||..+.+
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--- 129 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTES--- 129 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTE---
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCc---
Confidence 3777777776 3 5699999987654333221222222222233 67788888865 457888888765
Q ss_pred eeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Ee---------cceEEEEEcccceeccccccCCCCCCCce
Q 001343 910 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VH---------ETQLAIYDASKMERIRQWTPQDALSAPIS 979 (1096)
Q Consensus 910 w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~i~ 979 (1096)
|..- ..+.... ....+..-+++.++. +. -..+.+||+.+.+-...-... .....
T Consensus 130 W~~~----------~~~p~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~ 193 (306)
T 3ii7_A 130 WHTK----------PSMLTQR---CSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI---EARKN 193 (306)
T ss_dssp EEEE----------CCCSSCC---BSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS---SCCBS
T ss_pred eEeC----------CCCcCCc---ceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc---chhhc
Confidence 3211 1111111 111122236666666 32 345889999876532211111 11112
Q ss_pred EEEEeeCCcEEEEEecC-----CcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeC---
Q 001343 980 CAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD--- 1051 (1096)
Q Consensus 980 ~l~~s~dg~~la~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~d--- 1051 (1096)
..+..-++++++.|+.+ ..+.+||+.+.+-... . ..|.. ... . .++.. ++.+++.|+.+
T Consensus 194 ~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~---r~~--~--~~~~~--~~~i~v~GG~~~~~ 260 (306)
T 3ii7_A 194 HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-S---PMPWK---GVT--V--KCAAV--GSIVYVLAGFQGVG 260 (306)
T ss_dssp CEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-C---CCSCC---BSC--C--EEEEE--TTEEEEEECBCSSS
T ss_pred ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-C---CCCCC---ccc--e--eEEEE--CCEEEEEeCcCCCe
Confidence 22223478888888754 3588999988764322 1 12222 111 1 12222 57888888865
Q ss_pred --CcEEEEccCCCCCcccc
Q 001343 1052 --GSVKVMEPSESEGKWGV 1068 (1096)
Q Consensus 1052 --g~i~vW~v~~~~~~~~~ 1068 (1096)
..+.+||+.+. +|..
T Consensus 261 ~~~~~~~yd~~~~--~W~~ 277 (306)
T 3ii7_A 261 RLGHILEYNTETD--KWVA 277 (306)
T ss_dssp BCCEEEEEETTTT--EEEE
T ss_pred eeeeEEEEcCCCC--eEEe
Confidence 46888888774 4554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.39 E-value=1.4 Score=47.41 Aligned_cols=234 Identities=9% Similarity=-0.001 Sum_probs=117.8
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccccee----ecccccCEEEEEEecC---CCcEEEEEEeC-------
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ----IDAHVGAVNDLAFAYP---NKLLCVVTCGD------- 473 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----l~~h~~~v~~l~~s~d---~~~~~l~s~s~------- 473 (1096)
....|+|.|||+.|.++...|.|++++.+. +....+.. .....+....++|+|+ +.. +.++-+.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence 467899999999444556789999998543 21111111 1122346789999996 553 3333322
Q ss_pred CCcEEEEE-cCC--c--eEEE-eeCC------CCCeEEEEeeecCCCcEEEEEEC-------------CCeEEEEEcCCC
Q 001343 474 DKLIKVWE-LSG--R--KLFN-FEGH------EAPVYSICPHHKENIQFIFSTAI-------------DGKIKAWLYDTM 528 (1096)
Q Consensus 474 d~~i~iwd-~~~--~--~~~~-~~~~------~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~ 528 (1096)
...|..|+ ..+ . .... +... ...-..+.|.| +|.+.++.+. .|.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG--KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS--SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC--CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 23566666 322 1 1111 1111 11235688866 6655555433 245666665432
Q ss_pred C------------eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE--------eCCCC--------------
Q 001343 529 G------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW--------NESEG-------------- 574 (1096)
Q Consensus 529 ~------------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw--------d~~~~-------------- 574 (1096)
- ....+.........++|.|+...|.++....++...|.+. ....+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 0 1112222223578899999444444443221111122221 10000
Q ss_pred -------eeeEEEcCcCccceEEEEEeC-------CCCEEEEEEcCCeEEEEeCCCCeEEEEeecC-CCCCCccEEEEeC
Q 001343 575 -------TIKRTYAGFRKKSNGVVQFDT-------TQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSK 639 (1096)
Q Consensus 575 -------~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~ 639 (1096)
..+..+..+. ....+.|.. ++.++++.-..+.|...+++.++........ .....+..+++.|
T Consensus 255 ~~~~~~~~P~~~~~~~~--ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDSP--AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp SSCTTSCCCSEEESSCC--CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCCccCCeEEeCCCc--CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 0111222221 344566653 4556665556778888888766544332211 1123788999999
Q ss_pred CCCEEEEE
Q 001343 640 EGNLLAVT 647 (1096)
Q Consensus 640 ~~~~l~~~ 647 (1096)
||.++++.
T Consensus 333 dG~lyv~t 340 (353)
T 2g8s_A 333 DGYLYVLT 340 (353)
T ss_dssp TSCEEEEE
T ss_pred CCcEEEEE
Confidence 99866654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.3 Score=51.89 Aligned_cols=192 Identities=13% Similarity=0.157 Sum_probs=100.4
Q ss_pred cCCCcEEEEec-----C-------CeEEEEEcccceEEEeecCCCCCee-EEEEecCCCcEEEEeeCC--------CeEE
Q 001343 840 SKNDSYVMSAT-----G-------GKISLFNMMTFKVMTTFMSPPPAST-FLAFHPQDNNIIAIGTED--------STIH 898 (1096)
Q Consensus 840 s~dg~~la~~~-----d-------g~v~iwd~~~~~~~~~~~~h~~~i~-~l~~s~~d~~~l~s~~~d--------g~i~ 898 (1096)
..++++++.|+ + ..+.+||..+.+....-........ +++. - ++++++.|+.+ ..+.
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGE-A-LNSIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEE-E-TTEEEEECCEESSTTCCBCCCEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEE-E-CCEEEEEeCCcCCCCCcccceEE
Confidence 35777777776 1 1278889877654332111111111 2222 3 57788888743 3578
Q ss_pred EEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Ee------cceEEEEEccccee--ccccc
Q 001343 899 IYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VH------ETQLAIYDASKMER--IRQWT 969 (1096)
Q Consensus 899 iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~------d~~i~iwd~~~~~~--~~~~~ 969 (1096)
+||..+.+ |..- ..+... .....+...+++.++. +. -..+.+||+.+.+- +..+.
T Consensus 121 ~~d~~~~~---W~~~----------~~~p~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p 184 (315)
T 4asc_A 121 CYDRLSFK---WGES----------DPLPYV---VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ 184 (315)
T ss_dssp EEETTTTE---EEEC----------CCCSSC---CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS
T ss_pred EECCCCCc---EeEC----------CCCCCc---ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC
Confidence 88887765 3211 111111 1112222346666666 43 24689999987653 22222
Q ss_pred cCCCCCCCceEEEEeeCCcEEEEEecCC-----cEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCce
Q 001343 970 PQDALSAPISCAVYSCNSQLVFATFCDG-----NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1044 (1096)
Q Consensus 970 ~~~~~~~~i~~l~~s~dg~~la~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~ 1044 (1096)
. ......+..-++++++.|+.++ .+.+||+.+.+-...-. .|.. ... . +++.. ++.+
T Consensus 185 ~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~---r~~--~--~~~~~--~~~l 246 (315)
T 4asc_A 185 T-----ARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE---RSS--L--SLVSL--VGTL 246 (315)
T ss_dssp S-----CCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC---CBS--C--EEEEE--TTEE
T ss_pred C-----chhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc---ccc--e--eEEEE--CCEE
Confidence 1 1112222234788888888654 48889998876433211 2222 111 1 12222 5788
Q ss_pred EEEEeeCC--------------cEEEEccCCCCCccccC
Q 001343 1045 FAIGLTDG--------------SVKVMEPSESEGKWGVS 1069 (1096)
Q Consensus 1045 l~s~~~dg--------------~i~vW~v~~~~~~~~~~ 1069 (1096)
++.|+.++ .|.+||+.+. +|..-
T Consensus 247 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 283 (315)
T 4asc_A 247 YAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGV 283 (315)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEE
T ss_pred EEECCccccCcCCccccccccCcEEEecCCCC--hhhhh
Confidence 88888743 3677887764 55543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.4 Score=51.20 Aligned_cols=188 Identities=6% Similarity=0.054 Sum_probs=108.0
Q ss_pred EEEEEEecCCCcEEEEEE------------eCCCcEEEEE-cCC-ceEEE--eeC-----CCCCeEEEEeeecCCCc--E
Q 001343 454 VNDLAFAYPNKLLCVVTC------------GDDKLIKVWE-LSG-RKLFN--FEG-----HEAPVYSICPHHKENIQ--F 510 (1096)
Q Consensus 454 v~~l~~s~d~~~~~l~s~------------s~d~~i~iwd-~~~-~~~~~--~~~-----~~~~v~~~~~~~~~~~~--~ 510 (1096)
.-++...|+|. .++++ ..+|.|.++| .+. ..... +.+ .......+.+..+.++. +
T Consensus 52 ~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 52 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 34555667664 44444 2689999999 421 12222 222 23456777776643343 4
Q ss_pred EEEEEC--CCeEEEEEcCCCCeee----EEeCC-CCcEEEEEEcCCCCEEEEEeec-------------cCCCCeEEEEe
Q 001343 511 IFSTAI--DGKIKAWLYDTMGSRV----DYDAP-GHWCTTMLYSADGSRLFSCGTS-------------KDGDSFLVEWN 570 (1096)
Q Consensus 511 l~s~~~--dg~i~iwd~~~~~~~~----~~~~~-~~~i~~l~~s~~~~~l~~~~~~-------------~~~~~~i~iwd 570 (1096)
+++-.. +.+|.+|+++...... .+... -...+.+.+.++|.+.++.... ....+.|+-+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 5788898887654332 22221 2267899999999877765310 11245677776
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCC-CeEE--EEeecCCCCCCccEEEEeC-CCCEEE
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNIL--TSTDAEGGLPNLPRLRFSK-EGNLLA 645 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~~~~~~~~~v~~~~~s~-~~~~l~ 645 (1096)
.. +......+. ...+.++|+|+++.++++. ..+.|+.|++.. +... ..+.. ....-.+++.+ +|++.+
T Consensus 210 ~~--~~~~~~~~l--~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 210 PN--DVRVVAEGF--DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp TT--CCEEEEEEE--SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEE
T ss_pred CC--eEEEeecCC--cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCcEEE
Confidence 63 322222222 1466799999998887765 578999999864 3322 22322 12456778888 487776
Q ss_pred EEECC
Q 001343 646 VTTAD 650 (1096)
Q Consensus 646 ~~~~d 650 (1096)
++..+
T Consensus 283 a~~~~ 287 (355)
T 3sre_A 283 GCHPN 287 (355)
T ss_dssp EEESC
T ss_pred EecCC
Confidence 66533
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.11 Score=55.72 Aligned_cols=160 Identities=12% Similarity=0.133 Sum_probs=101.2
Q ss_pred eeecCCCcEEEEecCCeEEEEEcccceEEEeecCC----CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeec
Q 001343 837 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP----PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSI 912 (1096)
Q Consensus 837 l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h----~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~ 912 (1096)
...+.+|.-++.+.++.||.-++......+.+... ...|..+..+| +|++||..+.. .|.|-.+..+. +..
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~~-~V~Vv~LP~~~---~~~ 100 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFNDN-EIFVMEVPWGY---SNV 100 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECSS-EEEEEECCTTC---SCC
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecCC-eEEEEEecCcc---ccC
Confidence 34567888888888899999998755555555443 23688999999 89999988665 68888887432 011
Q ss_pred cc-c--cccccee--eecCCCCCCCCCceEEEecCCc---EEEE-EecceEEEEEcccce-ecccc------ccCCCCCC
Q 001343 913 DT-W--EKRKSVT--IHIPAGKTPTGDTRVQFNADQV---RMLV-VHETQLAIYDASKME-RIRQW------TPQDALSA 976 (1096)
Q Consensus 913 ~~-~--~~~~~~~--~~~~~~~~~~~v~~v~fs~dg~---~l~~-~~d~~i~iwd~~~~~-~~~~~------~~~~~~~~ 976 (1096)
.. . .+-..+. +..........|..+.|+|-|. .|++ ..|+.|++||+.... ....+ .+......
T Consensus 101 ~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 101 EDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVN 180 (452)
T ss_dssp CCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCC
T ss_pred cccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccc
Confidence 10 0 0000111 1111111113899999998764 6777 899999999998521 11111 11111236
Q ss_pred CceEEEEeeCCcEEEEEe--cCCcEEE
Q 001343 977 PISCAVYSCNSQLVFATF--CDGNIGV 1001 (1096)
Q Consensus 977 ~i~~l~~s~dg~~la~~~--~dg~i~v 1001 (1096)
.|.+++|.++|-.|.+.+ ..|-|+-
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 789999999887666644 7787764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.4 Score=50.47 Aligned_cols=190 Identities=18% Similarity=0.206 Sum_probs=101.7
Q ss_pred CCcEEEEec-C-----CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC-----eEEEEeeccceeeee
Q 001343 842 NDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDELCVW 910 (1096)
Q Consensus 842 dg~~la~~~-d-----g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg-----~i~iw~~~~~~~~~w 910 (1096)
++++++.|+ + ..+.+||..+.+....-..........+..- ++++++.|+.++ .+.+||+.+.+ |
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~---W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNE---W 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTE---E
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCe---E
Confidence 777888876 3 2489999877654332211111111112223 577888888664 46677777655 3
Q ss_pred eccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Ee-------cceEEEEEcccceecc--ccccCCCCCCCceE
Q 001343 911 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VH-------ETQLAIYDASKMERIR--QWTPQDALSAPISC 980 (1096)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~-------d~~i~iwd~~~~~~~~--~~~~~~~~~~~i~~ 980 (1096)
.. +..+..... . ..++ .-+++.++. +. -..+.+||+.+.+-.. .+... ... .
T Consensus 137 ~~----------~~~~p~~r~-~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~--~ 198 (302)
T 2xn4_A 137 FH----------VAPMNTRRS-S-VGVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR---RSG--A 198 (302)
T ss_dssp EE----------ECCCSSCCB-S-CEEE-EETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC---CBS--C
T ss_pred ee----------cCCCCCccc-C-ceEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc---ccc--c
Confidence 21 111111111 1 1222 236666666 43 2358899998765322 22211 111 1
Q ss_pred EEEeeCCcEEEEEecCC-----cEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCC---
Q 001343 981 AVYSCNSQLVFATFCDG-----NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG--- 1052 (1096)
Q Consensus 981 l~~s~dg~~la~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg--- 1052 (1096)
.+..-++++++.|+.++ .+.+||+.+.+...... .+.. .. .. .++.. ++.+++.|+.++
T Consensus 199 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~~~~---r~---~~-~~~~~--~~~i~v~GG~~~~~~ 265 (302)
T 2xn4_A 199 GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD----MNMC---RR---NA-GVCAV--NGLLYVVGGDDGSCN 265 (302)
T ss_dssp EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC----CSSC---CB---SC-EEEEE--TTEEEEECCBCSSSB
T ss_pred cEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC----CCCc---cc---cC-eEEEE--CCEEEEECCcCCCcc
Confidence 22234788888887653 68899998876443221 1222 11 11 12222 578888888764
Q ss_pred --cEEEEccCCCCCcccc
Q 001343 1053 --SVKVMEPSESEGKWGV 1068 (1096)
Q Consensus 1053 --~i~vW~v~~~~~~~~~ 1068 (1096)
.+.+||+.+. +|..
T Consensus 266 ~~~v~~yd~~~~--~W~~ 281 (302)
T 2xn4_A 266 LASVEYYNPTTD--KWTV 281 (302)
T ss_dssp CCCEEEEETTTT--EEEE
T ss_pred cccEEEEcCCCC--eEEE
Confidence 4899998774 5654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.89 Score=48.98 Aligned_cols=232 Identities=9% Similarity=0.102 Sum_probs=116.3
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC---CCEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNYVG 422 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---~~~l~ 422 (1096)
..+.|+|.|+|+++++ +...|.|.+++.. +..... +. + .. .+..........|+|+|+ +.+|.
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~--~~--~-------~~-~v~~~g~~g~~gia~~pdf~~~g~lY 84 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAP--LS--G-------VP-DVWAHGQGGLLDVVLAPDFAQSRRIW 84 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCC--CB--S-------CC-CCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeE--ec--C-------Cc-ccccCCCCCceeEEECCCCCCCCEEE
Confidence 5789999999984344 4578999999853 322100 00 0 00 112223456789999996 55554
Q ss_pred EEE-C-------CCeEEEEEccCCC-cc---ccce-eec-----ccccCEEEEEEecCCCcEEEEEEeC-----------
Q 001343 423 VAF-T-------KHLIQLYSYAGSN-DL---RQHS-QID-----AHVGAVNDLAFAYPNKLLCVVTCGD----------- 473 (1096)
Q Consensus 423 s~~-~-------dg~i~vwd~~~~~-~~---~~~~-~l~-----~h~~~v~~l~~s~d~~~~~l~s~s~----------- 473 (1096)
++. . ...|..|++..+. .+ +.+. .+. .|. -..++|.|||. +.++.+.
T Consensus 85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~--Lyv~~Gd~~~~~~~q~~~ 160 (353)
T 2g8s_A 85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY--LFIALGENNQRPTAQDLD 160 (353)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE--EEEEECCTTCGGGGGCTT
T ss_pred EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCc--EEEEECCCCCCCccCCCC
Confidence 442 2 2356666665431 11 1110 111 132 35799999996 4444432
Q ss_pred --CCcEEEEEcCCce-------------EEEe-eCCCCCeEEEEeeecCCCcEEEEEECC--CeEEEEEcCCCC------
Q 001343 474 --DKLIKVWELSGRK-------------LFNF-EGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTMG------ 529 (1096)
Q Consensus 474 --d~~i~iwd~~~~~-------------~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~------ 529 (1096)
.+.|.-.+.+|+. ...+ .++. ....++|.+. ++. |.++... +.=.|.-+..+.
T Consensus 161 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~-~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~ 237 (353)
T 2g8s_A 161 KLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPW-SNA-LWLNEHGPRGGDEINIPQKGKNYGWPL 237 (353)
T ss_dssp SCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETT-TTE-EEEEEECSBSCEEEECCCTTCBCCTTT
T ss_pred CCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECC-CCC-EEEEecCCCCCcEEeEeccCCcCCCCC
Confidence 2456666644431 1111 2333 3567788663 333 4443322 111222111110
Q ss_pred -------------------------eeeEEeCCCCcEEEEEEcC-------CCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 530 -------------------------SRVDYDAPGHWCTTMLYSA-------DGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 530 -------------------------~~~~~~~~~~~i~~l~~s~-------~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
....+. +......++|.. +|.++++... .+.|...++..++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~----~~~v~~~~~~~~~~~ 312 (353)
T 2g8s_A 238 ATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALK----DKDVIVMSVNGDKVT 312 (353)
T ss_dssp BCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETT----TTEEEEEEEETTEEE
T ss_pred ccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEcc----CCEEEEEEeCCCeEe
Confidence 011111 122466777754 3555555433 667777777665443
Q ss_pred EE--EcCcCccceEEEEEeCCCCEEEEE
Q 001343 578 RT--YAGFRKKSNGVVQFDTTQNHFLAV 603 (1096)
Q Consensus 578 ~~--~~~~~~~~i~~~~~~~~~~~l~~~ 603 (1096)
.. +.......+..+++.|+|..+++.
T Consensus 313 ~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 313 EDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred eeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 32 211112256778899998855543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.24 Score=53.24 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=94.1
Q ss_pred CCCceeecCCCceee-ecCCCCcceEEeecC-----CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeec-----
Q 001343 314 SAEEVTYSSSRHQTW-SLDDLPRTVAVSLHQ-----GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS----- 382 (1096)
Q Consensus 314 ~~~~v~~~~~~~~~~-~~~~~~~~~~~~l~h-----~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~----- 382 (1096)
+..++.+..++...| ++.+.+. .+.+.. -+.|..+..||+|+ +||.. .+..|.|-.+..+.....
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~~--Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDSL--YHSLNFSRHLVLDDTFHVISSTSGD-LLCLF-NDNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCSS--CEEEECTTTCCCCTTCEEEECTTSS-EEEEE-CSSEEEEEECCTTCSCCCCHHHH
T ss_pred CCCEEEEEECCEEEEEECCCCCc--ceEEecCcccccCceeEEEECCCCC-EEEEe-cCCeEEEEEecCccccCcccccc
Confidence 355566655555554 4443332 334332 23788999999999 67765 467899988874432221
Q ss_pred cc--ceeecccccCccccccccccCCCCEEEEEEcC---CCCEEEEEECCCeEEEEEccCCCcccc-c------eeeccc
Q 001343 383 KP--FKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DGNYVGVAFTKHLIQLYSYAGSNDLRQ-H------SQIDAH 450 (1096)
Q Consensus 383 ~~--~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---d~~~l~s~~~dg~i~vwd~~~~~~~~~-~------~~l~~h 450 (1096)
.. .+.+.+.. .......+|..+.|+| .+..|++-..|+.|++||+......-. + ..+...
T Consensus 107 ~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~ 178 (452)
T 3pbp_A 107 DAFQIFHYSIDE--------EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDAR 178 (452)
T ss_dssp HTTEEEEEEGGG--------CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSS
T ss_pred cccceeEEEcCC--------cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcc
Confidence 01 11222211 0111467899999999 467899999999999999986321110 0 011223
Q ss_pred ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 451 ~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
...|.+++|..++-.+++++.+..|.|+-.-
T Consensus 179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 179 VNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp CCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred cceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 3678888998877655555555667665544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.24 Score=61.61 Aligned_cols=240 Identities=13% Similarity=0.131 Sum_probs=140.1
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCC
Q 001343 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg 428 (1096)
+.-.+|..+ ++|.= ...++.|+|+++...+.++. -...|..=.|-.+. .|+..+ +.
T Consensus 70 sAIMnP~~~-iiALr-ag~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~~-~l~lVT-~~ 125 (1630)
T 1xi4_A 70 SAIMNPASK-VIALK-AGKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DN 125 (1630)
T ss_pred hhccCCCcc-eEEEe-cCCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCCC-eeEEEc-CC
Confidence 344677776 67765 37799999999877665421 12356666665443 444443 35
Q ss_pred eEEEEEccCCCccccceeeccc----ccCEEEEEEecCCCcEEEEEEe------CCCcEEEEEcCCceEEEeeCCCCCeE
Q 001343 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h----~~~v~~l~~s~d~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~~~~v~ 498 (1096)
.|.-|++.+...... .+..| ...|..-.-+++.++ ++++|= -.|.+.+|....+.-+.+.||.+...
T Consensus 126 aVyHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (1630)
T ss_pred eEEEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeecccccchhhhHhHhhhh
Confidence 899999975433222 23333 456777788888885 333332 35888999866666666777766554
Q ss_pred EEEeeecCCC-cEEEEEEC---CCeEEEEEcCCC---Ceee-----EEeC----CCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 499 SICPHHKENI-QFIFSTAI---DGKIKAWLYDTM---GSRV-----DYDA----PGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 499 ~~~~~~~~~~-~~l~s~~~---dg~i~iwd~~~~---~~~~-----~~~~----~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+........ ..+..+.. .+.++|-++... ...+ .+.. .+.-..++..++....+...+.
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk---- 278 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----
Confidence 4443211111 22222221 278888888543 1111 1111 1234557778887777777776
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
.|.+.++|+.++.++..-+-... .+...+......-++.....|.|.-..++....+
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred CceEEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 89999999999988766543333 4444443333344455556666665555544433
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.35 Score=51.33 Aligned_cols=226 Identities=9% Similarity=-0.015 Sum_probs=109.4
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-----C------CcEEEEE-cCCceEE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----D------KLIKVWE-LSGRKLF 488 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-----d------~~i~iwd-~~~~~~~ 488 (1096)
++.|+ ..+.+||..+++-.. ..+..............++. +++.|+. . ..+.+|| .+++- .
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~ 80 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW-L 80 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEE-E
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeE-E
Confidence 34454 578899988865322 12322222223333344566 6666663 1 1267788 44432 2
Q ss_pred EeeCCCCCeE--EEEeeecCCCcEEEEEECC--------CeEEEEEcCCCCeeeEEeCCCCcE-EEEEEcCCCCEEEEEe
Q 001343 489 NFEGHEAPVY--SICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWC-TTMLYSADGSRLFSCG 557 (1096)
Q Consensus 489 ~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~l~~~~ 557 (1096)
.+.....+-. +++. . ++.+++.|+.+ ..+.+||..+.+-...-....... .+++. -+++.++.++
T Consensus 81 ~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 156 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGG 156 (315)
T ss_dssp ECCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred ECCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeC
Confidence 2221111111 1221 1 44666777642 357788877653222111111111 12222 3555666665
Q ss_pred ecc--CCCCeEEEEeCCCCeeeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcCC-----eEEEEeCCCCeEEEEeecCCCC
Q 001343 558 TSK--DGDSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 558 ~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
... .....+.+||..+.+-...-...... ...++.+ ++..++.|+.++ .+.+||..+.+....-.....
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 411 11357889998877544322111111 1122222 566777777544 588999988765554332222
Q ss_pred CCccEEEEeCCCCEEEEEECCC--------------cEEEEEcCCC
Q 001343 630 PNLPRLRFSKEGNLLAVTTADN--------------GFKILANAIG 661 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~ 661 (1096)
.....+..-++++++.|+.++ .+.+||+.+.
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 222222223667777777532 3667777655
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.90 E-value=1.6 Score=48.49 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=54.0
Q ss_pred CCCeeeeeecCCCcEEEEec--CCeEEEEEcccc------eE-------EEeecCCCCCeeEEEEecCCCcEEEEeeCCC
Q 001343 831 EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTF------KV-------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1096)
Q Consensus 831 ~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~------~~-------~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg 895 (1096)
......+.++|||++++.++ +.++.|+|+... +. ....+ -.-.....+|.+ +|+-..+-.-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34456688999999999988 688999998642 11 22232 233566889999 887677778999
Q ss_pred eEEEEeeccc
Q 001343 896 TIHIYNVRVD 905 (1096)
Q Consensus 896 ~i~iw~~~~~ 905 (1096)
.|.-|++...
T Consensus 400 qvvkWni~~a 409 (638)
T 3sbq_A 400 QVVKWNMEEA 409 (638)
T ss_dssp EEEEEEHHHH
T ss_pred eEEEEeccHH
Confidence 9999999864
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.47 Score=50.15 Aligned_cols=229 Identities=7% Similarity=-0.017 Sum_probs=111.1
Q ss_pred CCCEEEEEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC----C-----CcEEEEE-c
Q 001343 417 DGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----D-----KLIKVWE-L 482 (1096)
Q Consensus 417 d~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~----d-----~~i~iwd-~ 482 (1096)
++..++.|+.+ ..+.+||..+++-.. +..+......- +++. -++. +++.|+. + ..+.+|| .
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEECCC
Confidence 56677777632 368889987754222 11111111111 1222 2454 5666665 2 4688888 4
Q ss_pred CCceEEEeeCC---CCCeEEEEeeecCCCcEEEEEECC-----CeEEEEEcCCCCeeeEEeCCC--CcEEEEEEcCCCCE
Q 001343 483 SGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSR 552 (1096)
Q Consensus 483 ~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~ 552 (1096)
+.+- ..+... ...-..+.+ ++.+++.|+.+ ..+.+||..+.+-...-.... .....+.+ +++.
T Consensus 99 ~~~W-~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 99 TNQW-SPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp TTEE-EECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCeE-eECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 4432 222111 111112222 44677776644 357778876554322111111 11222222 5666
Q ss_pred EEEEeeccCC-CCeEEEEeCCCCeeeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEEEEeec
Q 001343 553 LFSCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 553 l~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~ 625 (1096)
++.++.+... ...+.+||+.+.+-...-...... ....+.+ ++..++.|+.+ ..+.+||+.+.+....-..
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 6666543221 356889998877544321111111 1222222 56666777654 5699999988765543322
Q ss_pred CCCCCCccEEEEeCCCCEEEEEECC-----CcEEEEEcCCC
Q 001343 626 EGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 661 (1096)
.... .-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 250 p~~r-~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 250 KHRR-SALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SSCC-BSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCc-cceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2111 1122222 266777777754 34677777655
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.81 Score=48.51 Aligned_cols=221 Identities=11% Similarity=0.041 Sum_probs=103.7
Q ss_pred eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC----CC-------cEEEEE-cCCceEEEeeCCCCC
Q 001343 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----DK-------LIKVWE-LSGRKLFNFEGHEAP 496 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~----d~-------~i~iwd-~~~~~~~~~~~~~~~ 496 (1096)
.+..||..+++-... .+..............++. +++.|+. ++ .+.++| .+++- ..+.....+
T Consensus 25 ~~~~yd~~~~~W~~~--~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~ 99 (318)
T 2woz_A 25 AAVAYDPMENECYLT--ALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW-VGLPPLPSA 99 (318)
T ss_dssp EEEEEETTTTEEEEE--EECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEE-EECSCBSSC
T ss_pred ceEEECCCCCceecc--cCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcE-EECCCCCcc
Confidence 478889887653321 2221111222223344566 6777773 12 167778 44432 222111111
Q ss_pred e--EEEEeeecCCCcEEEEEECC-------CeEEEEEcCCCCeeeEEeCCCCcE-EEEEEcCCCCEEEEEeeccC--CCC
Q 001343 497 V--YSICPHHKENIQFIFSTAID-------GKIKAWLYDTMGSRVDYDAPGHWC-TTMLYSADGSRLFSCGTSKD--GDS 564 (1096)
Q Consensus 497 v--~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~l~~~~~~~~--~~~ 564 (1096)
- .+++.. ++.+++.|+.+ ..+.+||..+.+-...-....... .+++. .+++.++.|+.... ...
T Consensus 100 r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 175 (318)
T 2woz_A 100 RCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTN 175 (318)
T ss_dssp BCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCC
T ss_pred ccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccc
Confidence 1 122221 44677777754 246777776554332211111111 11222 45666666664221 134
Q ss_pred eEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
.+.+||+.+.+-...-..........++. -++..++.|+.+ ..+.+||+.+.+....-..... .....+..-
T Consensus 176 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~ 252 (318)
T 2woz_A 176 RVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVSL 252 (318)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEEE
T ss_pred eEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEEE
Confidence 68999998876544322111111112222 255666777643 3578899888765443222211 112122223
Q ss_pred CCCEEEEEECC--------------CcEEEEEcCCC
Q 001343 640 EGNLLAVTTAD--------------NGFKILANAIG 661 (1096)
Q Consensus 640 ~~~~l~~~~~d--------------g~i~iwd~~~~ 661 (1096)
++.+++.|+.+ ..+.+||+.+.
T Consensus 253 ~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 253 AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 56677777653 34666776554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.69 Score=48.79 Aligned_cols=190 Identities=16% Similarity=0.180 Sum_probs=99.5
Q ss_pred CCcEEEEecC----------CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCC-----CeEEEEeeccce
Q 001343 842 NDSYVMSATG----------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-----STIHIYNVRVDE 906 (1096)
Q Consensus 842 dg~~la~~~d----------g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~d-----g~i~iw~~~~~~ 906 (1096)
++++++.|+. ..+.+||..+.+....-..........+..- ++++++.|+.+ ..+.+||..+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 6777777652 3488999877654332111111111112223 57788888754 357778877765
Q ss_pred eeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eec-----ceEEEEEcccceecc--ccccCCCCCCCc
Q 001343 907 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE-----TQLAIYDASKMERIR--QWTPQDALSAPI 978 (1096)
Q Consensus 907 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d-----~~i~iwd~~~~~~~~--~~~~~~~~~~~i 978 (1096)
|..- ..+..... .-..+. -+++.++. +.+ ..+.+||+.+.+-.. .+... ...-
T Consensus 149 ---W~~~----------~~~p~~r~-~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~ 209 (308)
T 1zgk_A 149 ---WHLV----------APMLTRRI-GVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI---RSGA 209 (308)
T ss_dssp ---EEEC----------CCCSSCCB-SCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC---CBSC
T ss_pred ---EeEC----------CCCCcccc-ceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc---cccc
Confidence 3211 11111111 112222 25666666 432 468999997665322 22211 1111
Q ss_pred eEEEEeeCCcEEEEEecC-----CcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCC-
Q 001343 979 SCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG- 1052 (1096)
Q Consensus 979 ~~l~~s~dg~~la~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg- 1052 (1096)
.++ .-++++++.|+.+ ..+.+||+.+.+.... . ..|.. .. -. +++.. ++.+++.|+.++
T Consensus 210 ~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~---~~p~~---r~--~~--~~~~~--~~~i~v~GG~~~~ 274 (308)
T 1zgk_A 210 GVC--VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV-A---PMKHR---RS--AL--GITVH--QGRIYVLGGYDGH 274 (308)
T ss_dssp EEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-C---CCSSC---CB--SC--EEEEE--TTEEEEECCBCSS
T ss_pred eEE--EECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-C---CCCCC---cc--ce--EEEEE--CCEEEEEcCcCCC
Confidence 222 2378888888765 4589999988764322 1 12222 11 11 12222 578888888653
Q ss_pred ----cEEEEccCCCCCcccc
Q 001343 1053 ----SVKVMEPSESEGKWGV 1068 (1096)
Q Consensus 1053 ----~i~vW~v~~~~~~~~~ 1068 (1096)
.+.+||+.+. +|..
T Consensus 275 ~~~~~v~~yd~~~~--~W~~ 292 (308)
T 1zgk_A 275 TFLDSVECYDPDTD--TWSE 292 (308)
T ss_dssp CBCCEEEEEETTTT--EEEE
T ss_pred cccceEEEEcCCCC--EEee
Confidence 5788888764 4554
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.01 Score=47.03 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHhhCCCccH--HHHHHHHhccCHHHHHHHHcC
Q 001343 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFNM--KYFEEKVQAGDWDEVEKYLSG 59 (1096)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~~--~~~~~~i~~g~w~~~~~~l~~ 59 (1096)
++|+.+-|++||..+||.+++.+|.+|.++..+- ..-..-+++-.|..++++-++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 5799999999999999999999999999988752 112344555566666655444
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.81 Score=48.51 Aligned_cols=191 Identities=12% Similarity=0.106 Sum_probs=98.4
Q ss_pred ecCCCcEEEEecC-----C-------eEEEEEcccceEEEe--ecCCCCCeeEEEEecCCCcEEEEeeCC-------CeE
Q 001343 839 LSKNDSYVMSATG-----G-------KISLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTED-------STI 897 (1096)
Q Consensus 839 ~s~dg~~la~~~d-----g-------~v~iwd~~~~~~~~~--~~~h~~~i~~l~~s~~d~~~l~s~~~d-------g~i 897 (1096)
...++++++.|+. + .+.+||..+.+.... +...... .+++. - ++++++.|+.+ ..+
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGE-V-DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEE-E-TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEE-E-CCEEEEEcCccCCCCcccceE
Confidence 3457777777761 1 177888877655332 2111111 12222 2 57788888764 346
Q ss_pred EEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Ee------cceEEEEEcccceecc--cc
Q 001343 898 HIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VH------ETQLAIYDASKMERIR--QW 968 (1096)
Q Consensus 898 ~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~------d~~i~iwd~~~~~~~~--~~ 968 (1096)
.+||..+.+ |..- ..+.... ....+...+++.++. +. -..+.+||+.+.+-.. .+
T Consensus 130 ~~yd~~~~~---W~~~----------~~~p~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~ 193 (318)
T 2woz_A 130 LCYDPVAAK---WSEV----------KNLPIKV---YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM 193 (318)
T ss_dssp EEEETTTTE---EEEE----------CCCSSCE---ESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC
T ss_pred EEEeCCCCC---EeEC----------CCCCCcc---cccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC
Confidence 777777665 3211 1111111 111122256666666 43 2358999998765322 22
Q ss_pred ccCCCCCCCceEEEEeeCCcEEEEEecC-----CcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCc
Q 001343 969 TPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1043 (1096)
Q Consensus 969 ~~~~~~~~~i~~l~~s~dg~~la~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~ 1043 (1096)
... ... .++ ..-++++++.|+.+ ..+.+||+.+.+-... . ..|.. ... . .++.. ++.
T Consensus 194 p~~---r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~---r~~--~--~~~~~--~~~ 255 (318)
T 2woz_A 194 KTP---RSM-FGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-T---EFPQE---RSS--I--SLVSL--AGS 255 (318)
T ss_dssp SSC---CBS-CEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-C---CCSSC---CBS--C--EEEEE--TTE
T ss_pred CCC---ccc-ceE-EEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-C---CCCCc---ccc--e--EEEEE--CCE
Confidence 211 111 122 23477888878754 3477899888764322 1 12222 111 1 12222 578
Q ss_pred eEEEEeeC--------------CcEEEEccCCCCCcccc
Q 001343 1044 QFAIGLTD--------------GSVKVMEPSESEGKWGV 1068 (1096)
Q Consensus 1044 ~l~s~~~d--------------g~i~vW~v~~~~~~~~~ 1068 (1096)
+++.|+.+ ..+.+||+.+ .+|..
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~ 292 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK--KEWAG 292 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTT--TEEEE
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCC--CEehh
Confidence 88888764 3578888876 44554
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.10 E-value=4.2 Score=43.12 Aligned_cols=236 Identities=13% Similarity=0.057 Sum_probs=118.9
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC---CC
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GN 419 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---~~ 419 (1096)
.-...+.++|.|||+ ++++--..|.|++++..+++.... . . ...++.........|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v---~--~--------~~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTEL---G--E--------VPGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE---E--E--------CTTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeee---c--c--------cCceeecCCCCceeeEeccccccCC
Confidence 345789999999998 677654489999998765553210 0 0 00123345667899999996 44
Q ss_pred EEEEE-E--CCCeEEEEEccCCC----c---cccce-eec-ccccCEEEEEEecCCCcEEEEEEeC-------------C
Q 001343 420 YVGVA-F--TKHLIQLYSYAGSN----D---LRQHS-QID-AHVGAVNDLAFAYPNKLLCVVTCGD-------------D 474 (1096)
Q Consensus 420 ~l~s~-~--~dg~i~vwd~~~~~----~---~~~~~-~l~-~h~~~v~~l~~s~d~~~~~l~s~s~-------------d 474 (1096)
+|.+. + .++.|.-|.+..+. . .+.+. .+. +....-..|.|.|||. +.++.+. .
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~Gd~~~~~~~qd~~~~~ 173 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTGESGDTGLSQDRKSLG 173 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECBCTTCGGGTTCTTCST
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEECCCCCCccccCCCCCC
Confidence 44433 2 34566667665521 1 11111 121 1111346799999997 5555432 2
Q ss_pred CcEEEEEcCCc----------eEEEeeCCCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEEcCCCCe-------------
Q 001343 475 KLIKVWELSGR----------KLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGS------------- 530 (1096)
Q Consensus 475 ~~i~iwd~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~------------- 530 (1096)
|.|.-.+.+|+ .+.. .+|.. ...++|++ ++.+.++- +.|+.-.|--+..+..
T Consensus 174 G~IlRi~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp--~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~ 249 (347)
T 3das_A 174 GKILRMTPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDD--KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGS 249 (347)
T ss_dssp TCEEEECTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECT--TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCT
T ss_pred CEEEEEeCCCCccCCCCCCCCeEEe-eCCCC-cceEEECC--CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCc
Confidence 44444454443 1222 24543 45778876 44444332 2233222222221111
Q ss_pred -----eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee----eEEEcCcCccceEEEEEeCCCCEEE
Q 001343 531 -----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFL 601 (1096)
Q Consensus 531 -----~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~ 601 (1096)
...+..+......++|. +|..+..... ...|....+..... ...+.+... .+..++..|+|..++
T Consensus 250 ~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~----~~~l~~v~~~~~~~~~~~e~~l~~~~g-R~~dv~~~pDG~lyv 323 (347)
T 3das_A 250 GFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLR----GERLWRIPLKGTAAAADPQAFLEGEYG-RLRTVAPAGGDKLWL 323 (347)
T ss_dssp TCCCCSEEECTTTCCEEEEEEE-TTEEEEEEST----TCSEEEEEEETTEESSCCEEESTTTSS-CEEEEEEEETTEEEE
T ss_pred cccCCcEecCCCCCCCcceEEE-cCceeecccc----CCEEEEEEecCCceecceEEeecCCCC-CccEEEECCCCcEEE
Confidence 11222111245566665 3444444332 44555555544332 222333222 577788888876555
Q ss_pred EEE
Q 001343 602 AVG 604 (1096)
Q Consensus 602 ~~~ 604 (1096)
+..
T Consensus 324 ~td 326 (347)
T 3das_A 324 VTS 326 (347)
T ss_dssp EEC
T ss_pred EEc
Confidence 543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.08 E-value=1.2 Score=55.56 Aligned_cols=257 Identities=9% Similarity=0.144 Sum_probs=140.1
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccccee
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ 446 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 446 (1096)
.+|.|-|+.++..+..+++ .--+.-.+|..+.||.-. ..++.|+|+++...++..
T Consensus 48 ~~vvIidl~~~~~~~rrpi----------------------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~-- 102 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-- 102 (1630)
T ss_pred ceEEEEECCCCCCcccccc----------------------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccc--
Confidence 3788889888765533211 112334566666666554 579999999987766532
Q ss_pred ecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc--CCceEEEeeCC----CCCeEEEEeeecCCCcEEEEEE-----
Q 001343 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL--SGRKLFNFEGH----EAPVYSICPHHKENIQFIFSTA----- 515 (1096)
Q Consensus 447 l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~--~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~----- 515 (1096)
....+|.-=.|-.+.. +-||| +..|+.|+. +..+.+.|..| ...|..-.. +.+.++++..|
T Consensus 103 --~~~e~VvfWkWis~~~-l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~--d~~~kW~~l~gi~~~~ 174 (1630)
T 1xi4_A 103 --TMTDDVTFWKWISLNT-VALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRT--DAKQKWLLLTGISAQQ 174 (1630)
T ss_pred --ccCCCceEEEecCCCe-eEEEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeee--CCCCCeEEEEeeccCC
Confidence 1244677777776554 13343 668999994 33555555544 233433333 44556665443
Q ss_pred --CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEc--CC-CCEEEEEeeccCCCCeEEEEeCCCC---ee------eEEEc
Q 001343 516 --IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYS--AD-GSRLFSCGTSKDGDSFLVEWNESEG---TI------KRTYA 581 (1096)
Q Consensus 516 --~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s--~~-~~~l~~~~~~~~~~~~i~iwd~~~~---~~------~~~~~ 581 (1096)
..|.+.+|..+..... .+.+|......+... +. ...++.+..... .+.+.+.++... .. +..+-
T Consensus 175 ~~v~G~mQLyS~er~~sQ-~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~-g~kLhi~Ei~~~~~~~~~f~kk~~~~~~ 252 (1630)
T 1xi4_A 175 NRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQA-GGKLHIIEVGTPPTGNQPFPKKAVDVFF 252 (1630)
T ss_pred Ccccceeeeeecccccch-hhhHhHhhhheeccCCCCCCceEEEEEEecCC-CceEEEEecCCCccCCCCCccccccccC
Confidence 3588889987644321 223333322222221 11 222333322222 367888887542 11 11111
Q ss_pred Cc--CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 582 GF--RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 582 ~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
.. ......++..++....++..+.-|.|++||+.++..+..-+.... .|...+.+....-++.....|.|.-..+.
T Consensus 253 ~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~--~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 253 PPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred CcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCC--ceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 11 111233477778778888999999999999999988766554433 44443433332333333455655554444
Q ss_pred C
Q 001343 660 I 660 (1096)
Q Consensus 660 ~ 660 (1096)
.
T Consensus 331 ~ 331 (1630)
T 1xi4_A 331 E 331 (1630)
T ss_pred c
Confidence 3
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.03 E-value=1.3 Score=46.25 Aligned_cols=199 Identities=9% Similarity=0.054 Sum_probs=107.2
Q ss_pred ecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC--------------CeEEEEEc
Q 001343 460 AYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--------------GKIKAWLY 525 (1096)
Q Consensus 460 s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------------g~i~iwd~ 525 (1096)
+.++..+++.....++.|...+.+|.....+.... +. .+++ ++.+|+-+... ..|+..++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~--~~--~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT--AM--YINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE--EE--EEEE--CSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc--ee--eEEE--cCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 34566322222233556666666665555554221 22 2334 44566555432 45677777
Q ss_pred CCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEc
Q 001343 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 526 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
+..+........ ...++++++.|+....+.++...|+..++..... ..+..+.. ..++++++.|+-.+.
T Consensus 96 dg~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~-----~~~~~~g~~iy~t~~ 164 (302)
T 3s25_A 96 NGHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL-----FTCNTSDRYFYYNNP 164 (302)
T ss_dssp TSCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC-----CCSEEETTEEEEECT
T ss_pred CCCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc-----eEeeEECCEEEEEeC
Confidence 655433322211 2367789999887652233467788888875443 33333322 345678888876664
Q ss_pred -CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCC--cEEEEEcCCCccccccccCCCcccccCccee
Q 001343 606 -DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN--GFKILANAIGLRSLRAVENPPFEALRTPIES 682 (1096)
Q Consensus 606 -dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 682 (1096)
...|+..++..+.....+.. .. ...+.|++..|+-....+ .|..-++... ....+... .+
T Consensus 165 g~~~Iy~~~l~g~~~~~l~~~-----~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~--~~~~Lt~~-------~~-- 227 (302)
T 3s25_A 165 KNGQLYRYDTASQSEALFYDC-----NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNP--NPVVLTEA-------NI-- 227 (302)
T ss_dssp TTCCEEEEETTTTEEEEEECS-----CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSC--CCEECSCS-------CE--
T ss_pred CCceEEEEECCCCCEEEEeCC-----Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCC--CeEEEeCC-------Cc--
Confidence 67899989877765544331 12 234668888888766543 3444444433 12222211 11
Q ss_pred EEeecCCCeE
Q 001343 683 VALKVSASSA 692 (1096)
Q Consensus 683 ~~~s~~g~~l 692 (1096)
..++|+++.+
T Consensus 228 ~~~~~~g~~I 237 (302)
T 3s25_A 228 EHYNVYGSLI 237 (302)
T ss_dssp EEEEEETTEE
T ss_pred ceEEECCCEE
Confidence 2477888777
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.94 E-value=3.4 Score=45.92 Aligned_cols=277 Identities=13% Similarity=0.101 Sum_probs=144.2
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeecccc------eeecccccCccccccccccCCCCEE--EEEEcC---CCCEEEEEEC
Q 001343 358 TLLLVGSSNGEITLWELAMRDRLVSKPF------KIWDMAACSLPFQASIFKDVPISVS--RVAWSP---DGNYVGVAFT 426 (1096)
Q Consensus 358 ~llasg~~dg~I~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~V~--~l~~sp---d~~~l~s~~~ 426 (1096)
|.+.||+..|.|+|+-+-+++.+...++ .-|-+...+..+....-.-..+... .+++.. ||+||.+-..
T Consensus 71 y~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 71 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 4678999999999999999998865221 1122211111111000000112222 233332 6889988764
Q ss_pred -CCeEEEEEccCCCccccceeecccccCEEEEEEe--cCCCcEEEEEEeCC-------CcE---------EEEE-c---C
Q 001343 427 -KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA--YPNKLLCVVTCGDD-------KLI---------KVWE-L---S 483 (1096)
Q Consensus 427 -dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s--~d~~~~~l~s~s~d-------~~i---------~iwd-~---~ 483 (1096)
+..|-..+++.-++-+.+ ++ .....+..++|- |+.. +++.++.. |.. .+|. . +
T Consensus 151 an~RvAri~l~~~~~d~Ii-~i-Pn~~~~Hg~~~~~~p~T~--yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~t 226 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMI-TV-PNVQAIHGLRLQKVPHTK--YVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAET 226 (638)
T ss_dssp TTTEEEEEETTTTEEEEEE-EC-TTCSCEEEEEECCSSBCC--EEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTT
T ss_pred CCcceEEEECCcEeeceeE-eC-CCCcCcccccccccCCcc--EEEecceeeccCCCCCcccccCChhhceEEEEEcCCc
Confidence 467888888776554322 22 355678888886 5666 66666532 221 1221 1 1
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC---------------eEEEEE------------------------
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---------------KIKAWL------------------------ 524 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---------------~i~iwd------------------------ 524 (1096)
.+....+.- .+..-.+.. +.++.+.++.+.+. .+.+++
T Consensus 227 m~v~~Qv~v-~gnld~~~~--~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~Vi 303 (638)
T 3sbq_A 227 MEMAFQVIV-DGNLDNTDA--DYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVL 303 (638)
T ss_dssp CSEEEEEEE-SSCCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEE
T ss_pred cEEEEEEEc-CCChhhcCC--CCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEE
Confidence 111111100 001111111 12344555444221 233443
Q ss_pred -cCC----CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC------ee-------eEEEcCcCcc
Q 001343 525 -YDT----MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TI-------KRTYAGFRKK 586 (1096)
Q Consensus 525 -~~~----~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~------~~-------~~~~~~~~~~ 586 (1096)
.+. ......+.........+.++|||+++++++. .+.++.++|.+.. +. ..... -+-
T Consensus 304 D~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK---LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~Gl 378 (638)
T 3sbq_A 304 DGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK---LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGL 378 (638)
T ss_dssp ECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECT---TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCS
T ss_pred ccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC---CCCeEEEEEeehhhhhhhccccCcccceEeecc--CCC
Confidence 332 1111112122223456889999999999875 4778999998741 11 11222 122
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC----------eEEEEeecCCCCCCccEEEE------eCCCCEEEEEEC
Q 001343 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----------NILTSTDAEGGLPNLPRLRF------SKEGNLLAVTTA 649 (1096)
Q Consensus 587 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~~ 649 (1096)
.....+|.++|+...+.--|..|.-|++... ..+..+..|-. +-.+.- .++|++|++...
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq---pGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ---PGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC---EEEEEETTTTSTTCCSCEEEEEES
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC---CcccccCCCccCCCCccEEEEecc
Confidence 3455889999955555558999999998753 45566655532 222222 568888887753
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.2 Score=53.02 Aligned_cols=213 Identities=9% Similarity=0.029 Sum_probs=106.1
Q ss_pred CCcEEEEecCCeEEEEEcccceEEEeecCC-CCCeeEEEE--ecCCCcEEEEe-eCCCeEEEEeeccceeeeeecccccc
Q 001343 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSP-PPASTFLAF--HPQDNNIIAIG-TEDSTIHIYNVRVDELCVWSIDTWEK 917 (1096)
Q Consensus 842 dg~~la~~~dg~v~iwd~~~~~~~~~~~~h-~~~i~~l~~--s~~d~~~l~s~-~~dg~i~iw~~~~~~~~~w~~~~~~~ 917 (1096)
++..++...||.|.-.|..+|+.+-+++.. ..++....- .+.++..++.. +.||.|..++..+|. ..|.......
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~-~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL-QKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE-EEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc-EEeeeccccc
Confidence 344444444899999999899888887543 112221110 01133444444 689999999888775 3443332111
Q ss_pred ccceeeecCCCCCCCCCc-eE-EEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCC-----ceEEEEe-----e
Q 001343 918 RKSVTIHIPAGKTPTGDT-RV-QFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAP-----ISCAVYS-----C 985 (1096)
Q Consensus 918 ~~~~~~~~~~~~~~~~v~-~v-~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----i~~l~~s-----~ 985 (1096)
-...++.- .+ . .|. .. ..+.+|..++.+.++.+...|+.+|+.+-++..... ... ..+.... .
T Consensus 89 v~~SP~~~-~~--~-pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 89 VSTSPLHL-KT--N-IVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK-NGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp HTTCSEEE-EC--C-----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB-CC-------------------
T ss_pred eecccccc-CC--C-ceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC-ccccccccccccccccccccc
Confidence 00000000 00 0 000 00 002344433448999999999999998877654320 010 1111111 1
Q ss_pred CCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCCCc
Q 001343 986 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGK 1065 (1096)
Q Consensus 986 dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~~~ 1065 (1096)
.+..|+.+..+..+.+.+ .+|+ +.......+.+.. -...+.. .-..+. |+.. +.++.||.|.-.|..+|+..
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~~~~~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---LDVPLAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---TTHHHHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccc---ccccccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEE
Confidence 235677788888887777 4554 2211111111111 0000100 001122 4555 55789999999999999988
Q ss_pred c-cc
Q 001343 1066 W-GV 1068 (1096)
Q Consensus 1066 ~-~~ 1068 (1096)
| ..
T Consensus 236 W~~~ 239 (339)
T 2be1_A 236 WVSP 239 (339)
T ss_dssp EECC
T ss_pred EEee
Confidence 9 44
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.14 Score=49.60 Aligned_cols=110 Identities=14% Similarity=0.055 Sum_probs=65.8
Q ss_pred CCeeeeeecCCCcEEEEecCCeEEEEEcccceE------EEeec--CCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeec
Q 001343 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKV------MTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~------~~~~~--~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~ 903 (1096)
..+..++|+|+|.+.|+ .+|.++-.+..+... -..+- +-. .-.++.|.| ++.+.++ .||.|.-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 35779999999998888 778776666544211 01110 111 136889999 8877777 66888766653
Q ss_pred cceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEE
Q 001343 904 VDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAI 956 (1096)
Q Consensus 904 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~i 956 (1096)
+...-.|..+. ..+-.-.- ..+..|.|.|+|.+.++. |+.+.-
T Consensus 116 ~~~~~~Wl~~a------~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 116 QSDTDNWIARA------TEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp CSTTCCHHHHS------EEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred cCCCCceeccc------cEeccCCC---CceEEEEECCCceEEEEe-CCcEEe
Confidence 32211222111 01110000 257889999999998888 888543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.98 E-value=7.4 Score=41.20 Aligned_cols=236 Identities=13% Similarity=0.070 Sum_probs=122.9
Q ss_pred cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE--EEe----eCCCCCeEEEEeeec--CCCcEEEEEE--CCC
Q 001343 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNF----EGHEAPVYSICPHHK--ENIQFIFSTA--IDG 518 (1096)
Q Consensus 450 h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~--~~~----~~~~~~v~~~~~~~~--~~~~~l~s~~--~dg 518 (1096)
.-...+.|+|.|||. ++++--..|.|++++ ..++.. ..+ .........|+++|+ .++.+.++-+ .++
T Consensus 30 gL~~P~~ia~~pdG~--llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 30 GLNSPWGLAPLPGGD--LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp CCSSEEEEEECTTSC--EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred CCCCceEEEEcCCCc--EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 344678999999998 677665589999998 555432 111 123456789999874 2333333322 345
Q ss_pred eEEEEEcCCCC--------eeeE---Ee-CCCCcEEEEEEcCCCCEEEEEeecc---------CCCCeEEEEeCCCC---
Q 001343 519 KIKAWLYDTMG--------SRVD---YD-APGHWCTTMLYSADGSRLFSCGTSK---------DGDSFLVEWNESEG--- 574 (1096)
Q Consensus 519 ~i~iwd~~~~~--------~~~~---~~-~~~~~i~~l~~s~~~~~l~~~~~~~---------~~~~~i~iwd~~~~--- 574 (1096)
.|.-|.+.... .... +. ...+....|+|.|||.+.++.+... ...+.|.-.+....
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 56666655411 1111 11 1233556799999998777765311 11345555554422
Q ss_pred -----eeeEEEcCcCccceEEEEEeCCCCEEEEE-EcCCeEEEEeCCCCeE------------------EEEeecCCCCC
Q 001343 575 -----TIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNI------------------LTSTDAEGGLP 630 (1096)
Q Consensus 575 -----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~------------------~~~~~~~~~~~ 630 (1096)
....--.++.+ ...++|+|++..+++= +.++.=.|-.+..+.. +..+..+ ..
T Consensus 188 ~nPf~~~~i~a~G~RN--p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~--~~ 263 (347)
T 3das_A 188 GNPFPGSPVYSYGHRN--VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD--EA 263 (347)
T ss_dssp TCSSTTCCEEEBCCSB--CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT--TC
T ss_pred CCCCCCCeEEeeCCCC--cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC--CC
Confidence 11111224433 3458899987655442 2222222222222211 1111100 01
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCCCccc---cccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS---LRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
....++|. +|.++...-..+.|....+..+... ...+.+ ....+..+.+.|||.+.++...
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~-----~~gR~~dv~~~pDG~lyv~td~ 327 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEG-----EYGRLRTVAPAGGDKLWLVTSN 327 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTT-----TSSCEEEEEEEETTEEEEEECT
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecC-----CCCCccEEEECCCCcEEEEEcC
Confidence 33466665 4555555556666766666544211 011111 2346788999999988766543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.80 E-value=1.8 Score=46.71 Aligned_cols=140 Identities=10% Similarity=0.011 Sum_probs=63.9
Q ss_pred CeEEEEEcCCCCeeeEEeCCC-CcE-EEEEEcCCCCEEEEEeeccCC--CCeEEEEeC--CCCeeeEE--EcCcCccceE
Q 001343 518 GKIKAWLYDTMGSRVDYDAPG-HWC-TTMLYSADGSRLFSCGTSKDG--DSFLVEWNE--SEGTIKRT--YAGFRKKSNG 589 (1096)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~-~~i-~~l~~s~~~~~l~~~~~~~~~--~~~i~iwd~--~~~~~~~~--~~~~~~~~i~ 589 (1096)
..+.+||..+..-...-.... ... .+++. -+++.++.++.+..+ ...+..||+ .+.+-... +..... ...
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~-~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG-VAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC-CBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc-ccc
Confidence 468888887654433222221 111 22332 255566666542211 345777776 44433221 111111 111
Q ss_pred EEEEeCCCCEEEEEEcC----------------------CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEE
Q 001343 590 VVQFDTTQNHFLAVGED----------------------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1096)
Q Consensus 590 ~~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1096)
..+...++..++.|+.+ ..+.+||+.+.+....-..... .....+..-++++++.|
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEe
Confidence 11222355666666632 2578899987655443332222 22223334477888888
Q ss_pred ECCC------cEEEEEcCCC
Q 001343 648 TADN------GFKILANAIG 661 (1096)
Q Consensus 648 ~~dg------~i~iwd~~~~ 661 (1096)
+.++ .+.++++.++
T Consensus 324 G~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CC
T ss_pred eeCCCCCEeeeEEEEEEcCc
Confidence 8643 3555577665
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=1.1 Score=43.43 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=64.6
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCC--------EEEEEEcC
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS--------VSRVAWSP 416 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------V~~l~~sp 416 (1096)
..+.+++|+|+|. |.|+ .+|.+.-.+..++.... ..+.... -.++.|.|
T Consensus 41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~--------------------W~~s~t~IG~~Gw~~F~a~~fD~ 97 (236)
T 1tl2_A 41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDN--------------------WMGRAKKIGNGGWNQFQFLFFDP 97 (236)
T ss_dssp TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCC--------------------HHHHCEEEECSCGGGCSEEEECT
T ss_pred ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccc--------------------ccccccEecccccccceEEEECC
Confidence 4678999999998 6666 67765555543322110 0001112 47899999
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccc--e-ee-cccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQH--S-QI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~--~-~l-~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+|.+.++ .||.|.-++-.+...-.-+ . .+ .+-=..+..|.|.|+|. |.... |+.++-+.
T Consensus 98 ~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~---Lyav~-dg~lyr~~ 160 (236)
T 1tl2_A 98 NGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY---LYAVH-GQQFYKAL 160 (236)
T ss_dssp TSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC---EEEEE-TTEEEEEC
T ss_pred CCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce---EEEEe-CCcEEecC
Confidence 9999888 5698887775332211100 0 01 11124689999999997 45555 77765444
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.15 Score=54.04 Aligned_cols=189 Identities=10% Similarity=0.067 Sum_probs=103.4
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCC-CCCeEEEEeeec-CCCcEEEEE-ECCCeEEEEEcCCCCeeeEEeCC----C
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGH-EAPVYSICPHHK-ENIQFIFST-AIDGKIKAWLYDTMGSRVDYDAP----G 538 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~ 538 (1096)
.++.++.||.|.-.| .+|+.+.+++.. ..++....-... .++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 688899999999999 899999888754 123322211011 122333333 58999999998776444433221 1
Q ss_pred CcEEE---EEE-----cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccc------eEEEEEe-----CCCCE
Q 001343 539 HWCTT---MLY-----SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS------NGVVQFD-----TTQNH 599 (1096)
Q Consensus 539 ~~i~~---l~~-----s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~------i~~~~~~-----~~~~~ 599 (1096)
.++.. ..+ +..+..+++++. ++.++..|..+|+.+..+....... ..|.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11211 000 014556777776 8999999999999999987542111 0011110 12356
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEee-----cCCCCCCc-cEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001343 600 FLAVGEDSQIKFWDMDNVNILTSTD-----AEGGLPNL-PRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
++.+..+..+.+.+ ++|+ +..+. .......+ ..-..+.|+.+ +.++.||.|.-+|..+|.
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCC
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCc
Confidence 77777777777766 3443 21111 10000000 00011224555 457889999999988774
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.88 E-value=5.1 Score=42.97 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=37.0
Q ss_pred CCCcEEEEec--CCeEEEEEccc--ceE--EEeecCCCCCeeEEEEecCCCcEEEEeeC-C---------CeEEEEeecc
Q 001343 841 KNDSYVMSAT--GGKISLFNMMT--FKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTE-D---------STIHIYNVRV 904 (1096)
Q Consensus 841 ~dg~~la~~~--dg~v~iwd~~~--~~~--~~~~~~h~~~i~~l~~s~~d~~~l~s~~~-d---------g~i~iw~~~~ 904 (1096)
-++++++.|+ ...+.+||..+ .+. +..+......-.+++. - ++++++.|+. + ..+.+||..+
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-I-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-E-TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-E-CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 3778888877 35699999863 332 2222211111112222 3 5778888876 2 3577888877
Q ss_pred ce
Q 001343 905 DE 906 (1096)
Q Consensus 905 ~~ 906 (1096)
.+
T Consensus 96 ~~ 97 (357)
T 2uvk_A 96 NS 97 (357)
T ss_dssp TE
T ss_pred Cc
Confidence 65
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=92.78 E-value=10 Score=39.31 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=98.5
Q ss_pred EEEEcCCCCcEEEEEeCC-------------CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 349 SMDFHPSHQTLLLVGSSN-------------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~d-------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
+--++++|.++..+...+ ..|+..++..++... +... . +..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~--~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD--P--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS--C--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC--C--ccEEE
Confidence 456789999766665543 356666666554321 1111 1 23678
Q ss_pred CCCCEEEEEE--C--CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEEEcCCceEEEe
Q 001343 416 PDGNYVGVAF--T--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWELSGRKLFNF 490 (1096)
Q Consensus 416 pd~~~l~s~~--~--dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd~~~~~~~~~ 490 (1096)
+++++|+-.. . +..|...++++.. .. .+..+.. ..|+++++ .|+-.+ ....|.+-+..|.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~--~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDR--YFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETT--EEEEECTTTCCEEEEETTTTEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECC--EEEEEeCCCceEEEEECCCCCEEEE
Confidence 8999998776 2 3456666666433 22 2333332 45788888 444444 367788878666554444
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCC--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
.. +... ..+.| ++.+|+-....+ .|..-+++.... ..+. ...+ ..++|++.+|+.+... ....|..
T Consensus 183 ~~--~~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~--~~~~i~~ 250 (302)
T 3s25_A 183 YD--CNCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGG--DNPALCV 250 (302)
T ss_dssp EC--SCEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECS--SSCEEEE
T ss_pred eC--CCcc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECC--CCcEEEE
Confidence 32 2232 23445 345666555432 455555554332 2222 1223 3477889888866421 1356777
Q ss_pred EeCCCCe
Q 001343 569 WNESEGT 575 (1096)
Q Consensus 569 wd~~~~~ 575 (1096)
-++....
T Consensus 251 ~~~DG~~ 257 (302)
T 3s25_A 251 VKNDGTG 257 (302)
T ss_dssp EETTSCC
T ss_pred EECCCCc
Confidence 7765443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=92.13 E-value=9.1 Score=42.55 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=59.4
Q ss_pred CCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCC-----CCCCCCceEEEecC---Cc
Q 001343 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAG-----KTPTGDTRVQFNAD---QV 944 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~-----~~~~~v~~v~fs~d---g~ 944 (1096)
...+.|+|.| +++++++-...+.|.+++..++... .+..+.. ........++|+|| +.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~-------------~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g 92 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVK-------------TVFQVPEIVNDADGQNGLLGFAFHPDFKNNP 92 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEE-------------EEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEe-------------EEecCCccccccCCCCceeEEEECCCcCcCC
Confidence 4567999999 8987666544456887765544310 1111110 01126778999995 44
Q ss_pred EEEE--Ee------------cceEEEEEcccc-------eecc-ccccCCCCCCCceEEEEeeCCcEEEEEec
Q 001343 945 RMLV--VH------------ETQLAIYDASKM-------ERIR-QWTPQDALSAPISCAVYSCNSQLVFATFC 995 (1096)
Q Consensus 945 ~l~~--~~------------d~~i~iwd~~~~-------~~~~-~~~~~~~~~~~i~~l~~s~dg~~la~~~~ 995 (1096)
.|.+ +. ...|.-|++..+ +.+. .+.... ......++|.|||.+.++.+.
T Consensus 93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~--~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK--DHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS--SCCEEEEEECTTSCEEEEECC
T ss_pred EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCC--CCCCCeEeECCCCeEEEEECC
Confidence 4444 32 235655655321 1121 122211 234688999999988776543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=13 Score=44.18 Aligned_cols=196 Identities=11% Similarity=0.080 Sum_probs=103.9
Q ss_pred CCCcEEEEec-C----CeEEEEEcccceEEEee-c-------CCCCCeeEEEEecCCCcEEEEeeCCC------eEEEEe
Q 001343 841 KNDSYVMSAT-G----GKISLFNMMTFKVMTTF-M-------SPPPASTFLAFHPQDNNIIAIGTEDS------TIHIYN 901 (1096)
Q Consensus 841 ~dg~~la~~~-d----g~v~iwd~~~~~~~~~~-~-------~h~~~i~~l~~s~~d~~~l~s~~~dg------~i~iw~ 901 (1096)
.++++++.|+ + ..+.+||..+++....- . .....-..+.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 2 34889998776543322 1 1111222334433 577888887543 467788
Q ss_pred eccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eecc--eEEEEEcccceeccc-----cccCCC
Q 001343 902 VRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHET--QLAIYDASKMERIRQ-----WTPQDA 973 (1096)
Q Consensus 902 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~--~i~iwd~~~~~~~~~-----~~~~~~ 973 (1096)
..+.+ |..- ..+.... .-.+++...+++.++. |.++ .+.+||..+..-... +...
T Consensus 475 ~~t~~---W~~~----------~~~p~~R--~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~-- 537 (695)
T 2zwa_A 475 MKTRE---WSMI----------KSLSHTR--FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN-- 537 (695)
T ss_dssp TTTTE---EEEC----------CCCSBCC--BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS--
T ss_pred CCCCc---EEEC----------CCCCCCc--ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc--
Confidence 77765 3221 1111111 1122333247777777 4332 799999987653221 1111
Q ss_pred CCCCceEEEEeeC-CcEEEEEec--C-----CcEEEEecCCCce-----eEEEccccccCCCccCCCccccceEEEecCC
Q 001343 974 LSAPISCAVYSCN-SQLVFATFC--D-----GNIGVFDADTLRL-----RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1040 (1096)
Q Consensus 974 ~~~~i~~l~~s~d-g~~la~~~~--d-----g~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~ 1040 (1096)
.....++.+..+ +++++.|+. + ..+.+||+.+.+. ...+.... +.+..+|+ ++.+ .
T Consensus 538 -r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p--~~~R~~~~------~~~~-~- 606 (695)
T 2zwa_A 538 -SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP--LFQRYGSQ------IKYI-T- 606 (695)
T ss_dssp -CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG--GGCCBSCE------EEEE-E-
T ss_pred -ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC--CCCcccce------EEEe-C-
Confidence 222234555555 777777876 2 3588999988772 11222100 11100121 1222 1
Q ss_pred CCceEEEEeeC--------CcEEEEccCCCCCccc
Q 001343 1041 EPNQFAIGLTD--------GSVKVMEPSESEGKWG 1067 (1096)
Q Consensus 1041 d~~~l~s~~~d--------g~i~vW~v~~~~~~~~ 1067 (1096)
++.+++.|+.+ ..|.+||+.+. +|.
T Consensus 607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~--~W~ 639 (695)
T 2zwa_A 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSE--TLT 639 (695)
T ss_dssp TTEEEEECCBCSSCCCCTTTSEEEEETTTT--EEE
T ss_pred CCEEEEECCccCCCCCCCCCeEEEEECCCC--eEE
Confidence 37888888853 45899998774 565
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=89.00 E-value=22 Score=36.37 Aligned_cols=220 Identities=11% Similarity=0.096 Sum_probs=113.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.|..++..... .++. . ||.|..|-......+.. +.. ....|..|+...+- .++. .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------p~~------~~~~i~~ia~G~~h-s~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------PAA------TQSGVDAIAAGNYH-SLAL-K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------CGG------GGSCCCEEEECSSE-EEEE-E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------Ccc------CCCCEEEEEeCCCE-EEEE-E
Confidence 56677665543 3444 4 89999998655332210 000 11246666654432 3333 4
Q ss_pred CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeEEEEee
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~ 503 (1096)
||.|..|-......+-.... -...|..++...+ ..+.-. ||.|+.|- ..++.-.. ......|..++..
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~~---~~~~v~~ia~G~~----hs~al~-~G~v~~wG~n~~gqlg~~-~~~~~~i~~i~~G 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPAE---ARSGVDAIAAGAW----ASYALK-DGKVIAWGDDSDGQTTVP-AEAQSGVTALDGG 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCGG---GSSSEEEEEEETT----EEEEEE-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEEC
T ss_pred -CCEEEEeeCCCCCCCCCCcc---cCCCeEEEECcCC----EEEEEe-CCeEEEecCCCCCcCCCC-ccCCCCeEEEEcc
Confidence 89999997664333221111 1346888877654 333344 99999997 33433111 1123457777642
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
....++ -. ||.|..|-.......-........|..++...+...++ . ++.++.|-......+.. ...
T Consensus 150 ---~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~ 216 (282)
T 3qhy_B 150 ---VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTE 216 (282)
T ss_dssp ---SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGG
T ss_pred ---cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Ccc
Confidence 223333 34 79999997654333221111123577776654433332 3 88899997543211110 001
Q ss_pred CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 584 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
....+..++.... +.++-. ||.|+.|-...
T Consensus 217 ~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 217 ALSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp GGSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred cCCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 1113444554433 333333 89999997654
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=88.86 E-value=17 Score=37.16 Aligned_cols=220 Identities=14% Similarity=0.092 Sum_probs=110.2
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCc
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR 485 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~ 485 (1096)
.|..|+.... ..++. . ||.|..|-......+... ......|..++...+- .++. . ||.|+.|- ..++
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p---~~~~~~i~~ia~G~~h---s~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMP---AATQSGVDAIAAGNYH---SLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCC---GGGGSCCCEEEECSSE---EEEE-E-TTEEEEEECCTTST
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCC---ccCCCCEEEEEeCCCE---EEEE-E-CCEEEEeeCCCCCC
Confidence 5666665433 22333 4 899999976653333211 1123356677664332 3333 4 89999998 3333
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
.-. -..-...|..++... ...+.-. ||.|..|-.......-........|..++...+...++ . ++.
T Consensus 94 lg~-P~~~~~~v~~ia~G~----~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l---~----~G~ 160 (282)
T 3qhy_B 94 TTV-PAEARSGVDAIAAGA----WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV---K----NGG 160 (282)
T ss_dssp TCC-CGGGSSSEEEEEEET----TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTE
T ss_pred CCC-CcccCCCeEEEECcC----CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE---E----CCE
Confidence 211 111134677776532 2344445 99999997654333211111223566666544332222 1 677
Q ss_pred EEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE
Q 001343 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1096)
++.|-......+.. .......+..++... .+.++- .||.|+.|-......+..... ....|..++..... .++
T Consensus 161 v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg~p~~--~~~~v~~i~~G~~h-~~a 233 (282)
T 3qhy_B 161 VIAWGDNYFGQTTV-PAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVPTE--ALSGVSAIASGEWY-SLA 233 (282)
T ss_dssp EEEEECCTTSTTSC-CGGGGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCCGG--GGSSCCEEEECSSC-EEE
T ss_pred EEEecCCCCCCCCC-ceecCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCCCCcc--cCCCceEEEcCCCE-EEE
Confidence 88886543211111 111112455555443 333333 699999997654322111100 11256677654432 333
Q ss_pred EEECCCcEEEEEcCC
Q 001343 646 VTTADNGFKILANAI 660 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~~ 660 (1096)
.. ||.+..|-...
T Consensus 234 l~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 234 LK--NGKVIAWGSSR 246 (282)
T ss_dssp EE--TTEEEEESTTC
T ss_pred EE--CCEEEEecCCC
Confidence 33 89999986543
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=88.36 E-value=21 Score=38.07 Aligned_cols=151 Identities=12% Similarity=0.204 Sum_probs=81.7
Q ss_pred eEEEEEcccc--eEEEeecCC------CCCeeEEEEe---cC---CCcEEEEee-CCCeEEEEeeccceeeeeeccc--c
Q 001343 853 KISLFNMMTF--KVMTTFMSP------PPASTFLAFH---PQ---DNNIIAIGT-EDSTIHIYNVRVDELCVWSIDT--W 915 (1096)
Q Consensus 853 ~v~iwd~~~~--~~~~~~~~h------~~~i~~l~~s---~~---d~~~l~s~~-~dg~i~iw~~~~~~~~~w~~~~--~ 915 (1096)
+|.+||+.+. +.++++.-+ .+....+++. |. ++.++..+. ..+.|.++|+.+++ .|.+.. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~--swRv~~~~~ 201 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD--SWNVTHPTF 201 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE--EEEEECGGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc--EEEEccCCC
Confidence 4667888887 777765432 3456778777 21 133444333 46789999999987 332211 0
Q ss_pred ccccceeeecCCCCCC---CCCceEEEecC----CcEEEEEecceEEEEEcccceec-----ccc--ccCCCCCCCceEE
Q 001343 916 EKRKSVTIHIPAGKTP---TGDTRVQFNAD----QVRMLVVHETQLAIYDASKMERI-----RQW--TPQDALSAPISCA 981 (1096)
Q Consensus 916 ~~~~~~~~~~~~~~~~---~~v~~v~fs~d----g~~l~~~~d~~i~iwd~~~~~~~-----~~~--~~~~~~~~~i~~l 981 (1096)
... ....-...|... ..+..+++||+ ++.|....-..-++|.+.+..+. ..+ .+..+-...-..+
T Consensus 202 ~pd-~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 202 KAE-RPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL 280 (381)
T ss_dssp SCC-SCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred ccc-cCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence 000 000111122111 37899999998 78887743333445555432111 111 1111001223345
Q ss_pred EEe-eCCcEEEEEecCCcEEEEecCC
Q 001343 982 VYS-CNSQLVFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 982 ~~s-~dg~~la~~~~dg~i~vwd~~~ 1006 (1096)
++. .+|.++++--....|..|+..+
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 664 5777777777888899999876
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=85.73 E-value=63 Score=38.08 Aligned_cols=240 Identities=8% Similarity=0.061 Sum_probs=121.6
Q ss_pred EEEE-EcCCCCcEEEEEeCCC----eEEEEecCCCCeeecccceeecccccCccccccccc-cCCC------CEEEEEEc
Q 001343 348 ISMD-FHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPI------SVSRVAWS 415 (1096)
Q Consensus 348 ~~v~-fsp~g~~llasg~~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~------~V~~l~~s 415 (1096)
..+. ++|++++++++-|..| .|+++|+.+++.+.. . +. .-+. ....++|-
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~-----------------~~~~~k~~~~~~~~~~~~~W~ 193 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-G-----------------FEPITNSGKLLEGKFTYPTWI 193 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-C-----------------SCCBCTTCCBCCEETCCEEEE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-C-----------------cccccccccccccccceeeEE
Confidence 3444 8999996555544444 799999999987632 1 11 0000 11334776
Q ss_pred CCCCEEEEEE-----------CCCeEEEEEccCCCccccceeecccccCE-EEEEEecCCCcE---EEEEEeCC---CcE
Q 001343 416 PDGNYVGVAF-----------TKHLIQLYSYAGSNDLRQHSQIDAHVGAV-NDLAFAYPNKLL---CVVTCGDD---KLI 477 (1096)
Q Consensus 416 pd~~~l~s~~-----------~dg~i~vwd~~~~~~~~~~~~l~~h~~~v-~~l~~s~d~~~~---~l~s~s~d---~~i 477 (1096)
|+..+..+. ....|+.|.+-+...-... .+.+....+ .....+++++.. .+++.+.+ ..+
T Consensus 194 -d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 271 (711)
T 4hvt_A 194 -NKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKK-LFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDN 271 (711)
T ss_dssp -ETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEE-EEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEE
T ss_pred -CCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeE-EeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeE
Confidence 333333332 1246888887664322111 233333333 345556676641 35554423 345
Q ss_pred EEEEcC---CceEEEeeCCCCCeEEEEeeecCCCcEEEEE----------ECCCeEEEEEcCCCC-------eeeE-EeC
Q 001343 478 KVWELS---GRKLFNFEGHEAPVYSICPHHKENIQFIFST----------AIDGKIKAWLYDTMG-------SRVD-YDA 536 (1096)
Q Consensus 478 ~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~-~~~ 536 (1096)
.+.|.. ++ +..+...... .+..+. ++.+++.. ...+.|...++.... .... +..
T Consensus 272 ~~~~~~~~~~~-~~~l~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (711)
T 4hvt_A 272 YILDTKYKNLK-LQKINMPSDA--TLQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTP 346 (711)
T ss_dssp EEEECSSSSCE-EEECCSCTTC--EEEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECC
T ss_pred EEEcCCCCCCc-ceEeecCCcc--eEeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECC
Confidence 555633 33 2333222211 112222 33444422 246778889987631 2222 322
Q ss_pred -CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe-eeEE-EcCcCccceEEEEEeCCCCEE-EEEE---cCCeE
Q 001343 537 -PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRT-YAGFRKKSNGVVQFDTTQNHF-LAVG---EDSQI 609 (1096)
Q Consensus 537 -~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~l-~~~~---~dg~i 609 (1096)
....+..+.+..+ ..+++... ++...+.++++.++. ..+. +.......+......+++..+ ++.+ .-+.+
T Consensus 347 ~~~~~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~ 423 (711)
T 4hvt_A 347 TANEVFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTI 423 (711)
T ss_dssp CTTEEEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEE
T ss_pred CCCCeEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEE
Confidence 2336778888876 34444433 234568888877665 2333 332222245555666666544 4433 34678
Q ss_pred EEEeCC
Q 001343 610 KFWDMD 615 (1096)
Q Consensus 610 ~iwd~~ 615 (1096)
+.+|+.
T Consensus 424 ~~~d~~ 429 (711)
T 4hvt_A 424 YLWVKT 429 (711)
T ss_dssp EEECTT
T ss_pred EEEeCC
Confidence 888876
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=85.42 E-value=49 Score=36.59 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=34.9
Q ss_pred CEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCccccceeec---------ccccCEEEEEEecC
Q 001343 408 SVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQID---------AHVGAVNDLAFAYP 462 (1096)
Q Consensus 408 ~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~---------~h~~~v~~l~~s~d 462 (1096)
.-..|+|.|||. .|+++...|.|++++.+.......+..+. ...+....|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 467899999996 45556788999999754321111111111 11457889999996
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=82.28 E-value=86 Score=36.93 Aligned_cols=243 Identities=9% Similarity=0.033 Sum_probs=119.2
Q ss_pred EEEEE-EcCCCCEEEEEEC----C-CeEEEEEccCCCccccceeec-cccc------CEEEEEEecCCCcEEEEEE----
Q 001343 409 VSRVA-WSPDGNYVGVAFT----K-HLIQLYSYAGSNDLRQHSQID-AHVG------AVNDLAFAYPNKLLCVVTC---- 471 (1096)
Q Consensus 409 V~~l~-~spd~~~l~s~~~----d-g~i~vwd~~~~~~~~~~~~l~-~h~~------~v~~l~~s~d~~~~~l~s~---- 471 (1096)
...+. ++||+++++.+-. | ..|+++|+.+++.+... +. .-+. ....++|..++. ++++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~ 206 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHK 206 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCST
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCC
Confidence 33445 8899998876522 2 47999999998766431 21 1111 123457774443 44432
Q ss_pred ------eCCCcEEEEE-cCC--ceEEEeeCCCCCeE-EEEeeecCCCc---EEEEEECC---CeEEEEEcCCCC-eeeEE
Q 001343 472 ------GDDKLIKVWE-LSG--RKLFNFEGHEAPVY-SICPHHKENIQ---FIFSTAID---GKIKAWLYDTMG-SRVDY 534 (1096)
Q Consensus 472 ------s~d~~i~iwd-~~~--~~~~~~~~~~~~v~-~~~~~~~~~~~---~l~s~~~d---g~i~iwd~~~~~-~~~~~ 534 (1096)
+....|+.|. -+. +-...+.+....+. +.....++... .+++.+.+ ..+.+.+..... ....+
T Consensus 207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 286 (711)
T 4hvt_A 207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKI 286 (711)
T ss_dssp TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEEC
T ss_pred CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEe
Confidence 1124677776 221 22334444444432 22233332221 34444422 344555544322 22333
Q ss_pred eCCCCcEEEEEEcCCCCEEEEEeec------cCCCCeEEEEeCCCCe-------eeEE-EcCcCccceEEEEEeCCCCEE
Q 001343 535 DAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEGT-------IKRT-YAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 535 ~~~~~~i~~l~~s~~~~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~i~~~~~~~~~~~l 600 (1096)
...... .+..+.++.+++....+ .-..+.|...++.++. ..+. +.......+..+.+..+ ..+
T Consensus 287 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 287 NMPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF 363 (711)
T ss_dssp CSCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred ecCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence 333221 12333455555533111 0126778888887642 1222 44444446677777765 566
Q ss_pred EEEEcCCe--EEEEeCCCCe-EEEE-eecCCCCCCccEEEEeCCCC-EEEEEEC---CCcEEEEEcC
Q 001343 601 LAVGEDSQ--IKFWDMDNVN-ILTS-TDAEGGLPNLPRLRFSKEGN-LLAVTTA---DNGFKILANA 659 (1096)
Q Consensus 601 ~~~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~-~l~~~~~---dg~i~iwd~~ 659 (1096)
++...++. ++++++.++. .... +.... ...+......+++. ++++.+. -+.+..+|+.
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 66666664 6777776664 2222 33322 12455555666654 4444443 2557777765
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=80.15 E-value=19 Score=42.70 Aligned_cols=113 Identities=9% Similarity=-0.061 Sum_probs=63.0
Q ss_pred CCCEEEEEeeccCC--CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC--eEEEEeCCCCeEEEEee
Q 001343 549 DGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 624 (1096)
+++.++.||..... -..+.+||..+.+....-.......-.+.+.-.++..++.||.++ .+.+||..+........
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 67777777653321 246888999886544332111111112233324778888887544 79999998876544322
Q ss_pred ---cCCCCCCccEEEEeCC-CCEEEEEEC--C-----CcEEEEEcCCC
Q 001343 625 ---AEGGLPNLPRLRFSKE-GNLLAVTTA--D-----NGFKILANAIG 661 (1096)
Q Consensus 625 ---~~~~~~~v~~~~~s~~-~~~l~~~~~--d-----g~i~iwd~~~~ 661 (1096)
..........+.+..+ +.+++.|+. + ..+.+||+.+.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 1111112233566655 667777765 2 34777787665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1096 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.001 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.001 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.003 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 3e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 6e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.003 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.004 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.004 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.4 bits (199), Expect = 9e-17
Identities = 60/405 (14%), Positives = 118/405 (29%), Gaps = 82/405 (20%)
Query: 275 VPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLP 334
VP NQ + P P + D + + L+ + + Y+ + LP
Sbjct: 4 VPYNQRANHSKPIPPFL------LDLDSQSVPDALKKQTNDYYILYNPA---------LP 48
Query: 335 RTVAVSLHQ----GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM 390
R + V LH+ S V + F + L N ++ ++ LV++
Sbjct: 49 REIDVELHKSLDHTSVVCCVKFSNDGE--YLATGCNKTTQVYRVSDG-SLVARLSDDSAA 105
Query: 391 AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH 450
S + + V +SPDG ++ LI+++ + +
Sbjct: 106 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 165
Query: 451 VGAVNDLA-------------------------------------FAYPNKLLCVVTCGD 473
+ +++ P +
Sbjct: 166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 225
Query: 474 DKLIKVWELSGRKLFN--------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
D+ ++VW+ L GH+ VYS+ Q + S ++D +K W
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNL 283
Query: 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG--------DSFLVEWNESEGTIK 577
++ D P + Y + S T+++ D ++ W++ G
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
Query: 578 RTYAGFRKKSNGV-----VQFDTTQNHFLAVGEDSQIKFWDMDNV 617
G R V N F D + + W +
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.9 bits (107), Expect = 2e-05
Identities = 39/360 (10%), Positives = 103/360 (28%), Gaps = 29/360 (8%)
Query: 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756
P N + S P+ P + +D D + + + + + V
Sbjct: 4 VPYNQRANHSKPIPPFLL---------DLDSQSVPDALKKQTNDYYILYNPALPREIDVE 54
Query: 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816
+ +S D +S V + ++N LA G N ++++ + +
Sbjct: 55 LHKSLDHTSVVCCVKFSNDG-EYLATGCNKTTQVYRVSDGSLVAR-------LSDDSAAN 106
Query: 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAST 876
N + + + + + S + ++ + ++ + + + +
Sbjct: 107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 166
Query: 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTR 936
+ + + + G+ D T+ I+++R + + G
Sbjct: 167 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP------GDGKYI 220
Query: 937 VQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD 996
+ D+ + ET + + V++ + Q V + D
Sbjct: 221 AAGSLDRAVRVWDSETG-----FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 275
Query: 997 GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1056
++ +++ + + V + L VA G D V
Sbjct: 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLF 334
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.4 bits (194), Expect = 3e-16
Identities = 50/342 (14%), Positives = 108/342 (31%), Gaps = 40/342 (11%)
Query: 301 DHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSL-----HQGSTVISMDFHPS 355
+ EQL ++R A + ++ T ++D + R + H + +M +
Sbjct: 10 EAEQLKNQIRDA--RKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAK-IYAMHWGTD 66
Query: 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415
+ LL+ S +G++ +W+ +++ + P + + C+ + + ++
Sbjct: 67 SR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV------- 468
V ++ L Y +QI G +
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 469 --------------VTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFS 513
V+ D K+W++ G F GHE+ + +IC N +
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFAT 243
Query: 514 TAIDGKIKAWLYDTMGSRVDYDAPGHWC--TTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571
+ D + + + Y C T++ +S G L + D W+
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDA 299
Query: 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
+ AG + + + DS +K W+
Sbjct: 300 LKADRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.7 bits (109), Expect = 1e-05
Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSID 913
L+++ TF + F P + N A G++D+T ++++R D+ +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 914 TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET-QLAIYDASKMERIRQWTPQD 972
G T V F+ +L ++ ++DA K +R
Sbjct: 267 DN--------------IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA--- 309
Query: 973 ALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1003
+SC + + V D + +++
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.7 bits (104), Expect = 4e-05
Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 833 AVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891
+ ++ SK+ +++ ++++ + + L D +A G
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATG 330
Query: 892 TEDSTIHIYN 901
+ DS + I+N
Sbjct: 331 SWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.3 bits (95), Expect = 4e-04
Identities = 15/141 (10%), Positives = 41/141 (29%), Gaps = 30/141 (21%)
Query: 831 EEAVPCIALSKNDSYVMSATGG---KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNI 887
E + I N + + + ++ + + + T ++F +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284
Query: 888 IAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 947
+ G +D ++ W ++ + H ++V L
Sbjct: 285 LLAGYDDFNCNV----------WDALKADRAGVLAGH----------------DNRVSCL 318
Query: 948 VVHETQLAIYDASKMERIRQW 968
V + +A+ S ++ W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.1 bits (92), Expect = 0.001
Identities = 26/178 (14%), Positives = 52/178 (29%), Gaps = 31/178 (17%)
Query: 880 FHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF 939
D + G D++ + W + R++ T H + + F
Sbjct: 191 SLAPDTRLFVSGACDASAKL----------WDVREGMCRQTFTGH------ESDINAICF 234
Query: 940 NADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 999
+ + + ++ D + I+ +S + +L+ A + D N
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 1000 GVFDADTLRLRCYIAPSTYLSPSVLNG-SQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1056
V+DA VL G V + + A G D +K+
Sbjct: 295 NVWDALKADRAG-----------VLAGHDNRVS--CLGVTD-DGMAVATGSWDSFLKI 338
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.5 bits (189), Expect = 8e-16
Identities = 47/314 (14%), Positives = 94/314 (29%), Gaps = 54/314 (17%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS------------------- 382
H+ V + FHP +++ S + I +W+ D +
Sbjct: 16 HRSP-VTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 383 ----KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438
+ +VS V+ P+G+++ A I+++
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV--- 130
Query: 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK-LFNFEGHEAPV 497
H V + L+ +C +D+ ++VW ++ ++ H V
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 498 YSICPHHKENI------------------QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
I + + F+ S + D IK W T + +
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
W +L+ + G + SC D L W+ +T + F T +
Sbjct: 249 WVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNAHEHFVTSL-DFHKTAPY 303
Query: 600 FLAVGEDSQIKFWD 613
+ D +K W+
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.5 bits (150), Expect = 8e-11
Identities = 42/274 (15%), Positives = 69/274 (25%), Gaps = 68/274 (24%)
Query: 442 RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI 500
+ + H V + F ++ V+ +D IKVW+ +G +GH V I
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 501 CPHHKE----------------------------------------NIQFIFSTAIDGKI 520
H N I S + D I
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125
Query: 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580
K W T + W + + DG+ + SC D + W + K
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS----NDQTVRVWVVATKECKAEL 181
Query: 581 AGFRKKSNGV-------------------VQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621
R + + L+ D IK WD+ L
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
Query: 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + F G + D ++
Sbjct: 242 TLVGHDNWVR--GVLFHSGGKFILSCADDKTLRV 273
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (105), Expect = 3e-05
Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 9/178 (5%)
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
K W + + GH +PV + H + + S + D IK W Y+T
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGH 58
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
+ + G L SC + + E T+
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV-----SIMPNG 113
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+H ++ D IK W++ + + + R +++G L+A + D ++
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRV 169
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 30/228 (13%), Positives = 68/228 (29%), Gaps = 24/228 (10%)
Query: 835 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894
+ D V ++ I ++ + T + TF + + D +IA + D
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSND 164
Query: 895 STIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGD-----TRVQFNADQVRMLVV 949
T+ ++ V E + + ++ + + + T+ +
Sbjct: 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224
Query: 950 HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1009
+ + ++D S + D + ++ + + + D + V+D R
Sbjct: 225 RDKTIKMWDVSTGMCLMTLVGHDN---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281
Query: 1010 RCYIAPSTYLSPSVLNG-SQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1056
LN V + H G D +VKV
Sbjct: 282 MK-----------TLNAHEHFVT--SLDFHKTA-PYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.1 bits (92), Expect = 0.001
Identities = 18/175 (10%), Positives = 53/175 (30%), Gaps = 10/175 (5%)
Query: 835 PCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893
+ +++ + + S + + ++ + T + +++ P+ +
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 894 DSTIHIYNVRVDELCVWSID----TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 949
S L S D W+ + + G V F++ +L
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWVRGVLFHSGGKFILSC 265
Query: 950 HET-QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1003
+ L ++D ++ A ++ + + V D + V++
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.3 bits (165), Expect = 1e-12
Identities = 57/346 (16%), Positives = 110/346 (31%), Gaps = 33/346 (9%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W +L + H + + F ++ GS + + +W L +
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCL--RTLVG 55
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
S + +I + W+ + H +
Sbjct: 56 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115
Query: 448 DAHVGAVNDLAFAYPNKLL--------------CVVTCGDDKLIKVWELSGRK-LFNFEG 492
DA + + + L+ VV+ D ++KVW+ L +G
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552
H VYS+ + S ++D I+ W +T + GH T +
Sbjct: 176 HTNRVYSLQFDGI----HVVSGSLDTSIRVWDVETG--NCIHTLTGHQSLTSGMELKDNI 229
Query: 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612
L S + DS + W+ G +T G K + V +N + +D +K W
Sbjct: 230 LVSG----NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
Query: 613 DMDN---VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
D+ + L + ++ G + R+R S + AV + + +
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473
DG +V I+++ N + + + + +L V+
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-----SGMELKDNIL--VSGNA 235
Query: 474 DKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGS 530
D +K+W++ + S + N F+ +++ DG +K W T + +
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295
Query: 531 RVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
V ++ G + S + ++ L+ +
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.3 bits (157), Expect = 1e-11
Identities = 36/335 (10%), Positives = 86/335 (25%), Gaps = 38/335 (11%)
Query: 339 VSLHQG--STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP 396
V + Q + + PS LLL+ S +G + ++ +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKS-LLLITSWDGSL----------------TVYKFDIQAKN 46
Query: 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND 456
+ + + + T L + Q + +
Sbjct: 47 VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICR 106
Query: 457 LAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN--FEGHEAPVYSICPHHKENIQFIFST 514
+ +KL+ G ++I + + V + N +
Sbjct: 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166
Query: 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTM----LYSADGSRLFSCGTSK-----DGDSF 565
+ +++ + + L + D
Sbjct: 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226
Query: 566 LVEWNESEGTIKRTYAGFRKKSNGV-----VQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620
++N S+ R + K +N ++F G D I W++ +
Sbjct: 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
Query: 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ ++ + N+L + T+D+ FK
Sbjct: 287 KNFA---KFNEDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.2 bits (149), Expect = 1e-10
Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 23/262 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+S AW+ D + + H + +Y +G N Q ++ H G V + +A + +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 468 VVTCGDDKLIKVWELSGRK-LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
VTCG D+ VW L GR + C N + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGS---------------RLFSCGTSKDGDSFLVEWNE 571
+ + S D R+FS + +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 572 SEGTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629
S+ V V F + V DS + D D + + +E
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 630 PNLPRLRFSKEGNLLAVTTADN 651
F E +L+A
Sbjct: 246 LLAV--TFITESSLVAAGHDCF 265
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.1 bits (128), Expect = 4e-08
Identities = 29/282 (10%), Positives = 69/282 (24%), Gaps = 30/282 (10%)
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
+ ++ T + + +N E+ ++E + + K +
Sbjct: 10 ISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--------------- 53
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
V+ V W+PD N + T +++ G + + A K
Sbjct: 54 --VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 111
Query: 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+ + + + + N + + + D K + +
Sbjct: 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT----SKDGDSFLVEWNESEGTI------ 576
SCG + V W + T+
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231
Query: 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616
+ + T++ +A G D + D+
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 273
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.2 bits (97), Expect = 3e-04
Identities = 41/337 (12%), Positives = 79/337 (23%), Gaps = 58/337 (17%)
Query: 328 WSLDDLPRTVAVSL--HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPF 385
+ L H G V +D+ P ++ ++ +W L R +
Sbjct: 34 YEKSGNKWVQVHELKEHNGQ-VTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVI 91
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVA--WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ 443
+ AA + + + K S SRV + + S S D
Sbjct: 92 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 151
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503
+S + A + + V G +F V+ +C
Sbjct: 152 NSVLLAAGSCDFKCRI-FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 210
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563
+ S D + D + + + + + S + + D
Sbjct: 211 ANGSRVAWVSH--DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-----D 263
Query: 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQF------------------------------ 593
F V + K ++ G Q
Sbjct: 264 CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323
Query: 594 --------------DTTQNHFLAVGEDSQIKFWDMDN 616
+ F G D + WD+ +
Sbjct: 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (137), Expect = 3e-09
Identities = 42/295 (14%), Positives = 85/295 (28%), Gaps = 43/295 (14%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELA-------------------MRDRLVSKPF 385
V + + ++ G + I +W+ +R++
Sbjct: 16 KGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS 72
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+ + + + + + + + I ++ A D+
Sbjct: 73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHH 504
+ H AVN + F +V+ D+ IKVW + + GH+ + +
Sbjct: 133 VLVGHRAAVNVVDFDDK----YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 188
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + S + D I+ W D GH D R+ S D
Sbjct: 189 ----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG----AYDG 238
Query: 565 FLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
+ W+ R AG + S V + + ++ D I WD
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 29/222 (13%), Positives = 57/222 (25%), Gaps = 41/222 (18%)
Query: 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEA 495
G + L++ V L + ++ + V+ D IK+W+ + GH
Sbjct: 1 GRHSLQRIHCRSETSKGVYCLQYD--DQKI--VSGLRDNTIKIWDKNTLECKRILTGHTG 56
Query: 496 PVYSICPHHKENIQFI-----FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550
V + + I ++ V + +
Sbjct: 57 SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116
Query: 551 SRLFSCG----------------------------TSKDGDSFLVEWNESEGTIKRTYAG 582
++ S GD + WN S RT G
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 176
Query: 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624
G+ ++ D+ I+ WD++ L +
Sbjct: 177 H---KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 215
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.001
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 320 YSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379
S+S +T + + V G + L++ GSS+ I LW++
Sbjct: 152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGAC 210
Query: 380 LVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439
L + + R+ + V + + AG+
Sbjct: 211 LRVLEGHEELVRCIRFDNK------------RIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
Query: 440 DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481
LR + H G V L F ++ V+ D I +W+
Sbjct: 259 CLRT---LVEHSGRVFRLQFD-EFQI---VSSSHDDTILIWD 293
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.7 bits (132), Expect = 1e-08
Identities = 35/314 (11%), Positives = 82/314 (26%), Gaps = 27/314 (8%)
Query: 313 PSAEEVTYSSSRHQT-WSLDD----LPRTVAVSLHQGSTVISMDFHPSHQTLLLV-GSSN 366
P+ + Y + LDD +P V + H S V ++ F P + L G +
Sbjct: 27 PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES 86
Query: 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426
G++ +W + S F+ + +S ++W +G + V
Sbjct: 87 GKVIVWGWTF-----------DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV--WELSG 484
+ + V +
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195
Query: 485 RKLFNFEGHEAPVYSICPHHKEN--IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT 542
+ V + + + S + + D P
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255
Query: 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ--FDTTQNHF 600
L D + + G D+ + W+ + + + +++ T
Sbjct: 256 FALSWLDSQKFATVG----ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311
Query: 601 LAVGEDSQIKFWDM 614
+++ D + F+++
Sbjct: 312 ISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 7e-08
Identities = 36/318 (11%), Positives = 88/318 (27%), Gaps = 27/318 (8%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
+ + + P+ + + + + D +P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFV----------------RCLDDGDSKVPPVVQFTGH 61
Query: 405 VPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDL 457
V+ V +SP Y+ + ++ + + + S+ G ++D+
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 458 AFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517
++ + + LCVV G D + + C + + D
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 518 GKIK---AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574
G + + S + G + + +S D S S +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634
+ + + + F VG D+ I+ WD+ + + +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
Query: 635 LRFSKEGNLLAVTTADNG 652
+ GN ++ + +G
Sbjct: 301 VGVVATGNGRIISLSLDG 318
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 30/325 (9%), Positives = 86/325 (26%), Gaps = 32/325 (9%)
Query: 333 LPRTVAV--SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM 390
+PR +L+ G V ++ + + G + +W+++
Sbjct: 38 IPRHARQINTLNHGEVVCAVTISNPTR--HVYTGGKGCVKVWDISHPG------------ 83
Query: 391 AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH 450
P + + PDG + V + ++ A + +
Sbjct: 84 --NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA 141
Query: 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQF 510
+ G+ + + + + + C +
Sbjct: 142 PACYALAISPDSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
+++ +D +++W +D ++ Y G L S + + V
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256
Query: 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630
+ ++F F++ G+D+ + W + + +
Sbjct: 257 DKYQLHLHESCVLS------LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL 310
Query: 631 NLPRLRFSKEGNLLAVTTADNGFKI 655
+ S + + + D +
Sbjct: 311 S---CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 8/136 (5%)
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
+ + D + + + P G ++ V +++ + Q+
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV----NKPDKYQL 261
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507
H V L FAY K V+ G D L+ W + V S +
Sbjct: 262 HLHESCVLSLKFAYCGKWF--VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD- 318
Query: 508 IQFIFSTAIDGKIKAW 523
++I + + D K +
Sbjct: 319 -KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471
+ ++ G + +L+ + + Q +V + +K + VT
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYI--VTG 324
Query: 472 GDDKLIKVWEL 482
DK V+E+
Sbjct: 325 SGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.002
Identities = 7/69 (10%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 835 PCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893
+ + + +S ++ + + D+ I G+
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSV-LSCDISV-DDKYIVTGSG 326
Query: 894 DSTIHIYNV 902
D +Y V
Sbjct: 327 DKKATVYEV 335
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.3 bits (131), Expect = 2e-08
Identities = 33/304 (10%), Positives = 81/304 (26%), Gaps = 20/304 (6%)
Query: 313 PSAEEVTYSSSRH-QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITL 371
P+ +++ Y + T + L T + H PS G +G + +
Sbjct: 27 PAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQ-TTVAKTSPSGY-YCASGDVHGNVRI 84
Query: 372 WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431
W+ ++ ++ + + + + + G L
Sbjct: 85 WDTTQTTHILKTTIPVFSGPVKDISWDSESKR----------IAAVGEGRERFGHVFLFD 134
Query: 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491
+ G+ + + + V F
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194
Query: 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
P S+ + + +DG D V + T DG+
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS---PDGT 251
Query: 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611
++ S D + WN + +++T + + + T+ +++ + I F
Sbjct: 252 KIASAS----ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 612 WDMD 615
+ +
Sbjct: 308 VNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.4 bits (126), Expect = 7e-08
Identities = 41/332 (12%), Positives = 91/332 (27%), Gaps = 31/332 (9%)
Query: 326 QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPF 385
QT LPRT T + + P+ + + + +
Sbjct: 5 QTALFPSLPRT------ARGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLT------- 49
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
I+ + + SP G Y ++++ + +
Sbjct: 50 ------------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-ILKT 96
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505
I G V D+++ +K + V G ++ V+ +A +
Sbjct: 97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP 156
Query: 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565
I S + D + + + + + ++ Y+ DGS S G +
Sbjct: 157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 216
Query: 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN--HFLAVGEDSQIKFWDMDNVNILTST 623
G + S V + + + D IK W++ + + +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276
Query: 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + +L L +A+
Sbjct: 277 PVGTRIED-QQLGIIWTKQALVSISANGFINF 307
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (119), Expect = 5e-07
Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 9/139 (6%)
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
Q + + H+ +V + + + +T DDK+I+V++ + + L GH+ V+++
Sbjct: 4 QRTTLRGHMTSVIT-CLQFEDNYV--ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561
H + S + D ++ W ++ + + + S+D
Sbjct: 61 YAHG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 562 GDSFLVEWNESEGTIKRTY 580
+ W + + +
Sbjct: 118 NTLHV--WKLPKESSVPDH 134
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL--FNFEGHEAPVYSI 500
+ H ++ + Y + + + G + ++ L KL N ++S+
Sbjct: 273 YSRKFSYHHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 330
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
K + + DG+ + D
Sbjct: 331 NFKGK---TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.003
Identities = 35/328 (10%), Positives = 90/328 (27%), Gaps = 16/328 (4%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
+ + + +S H G V ++ + +L+ GS++ + +W++
Sbjct: 38 YDSINKKFLLQLSGHDGG-VWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHN 94
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
+ + +I V S Y +
Sbjct: 95 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507
G + + + + V D+ LI + L+ GH +Y +
Sbjct: 155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHE 212
Query: 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567
+ S ++D I+ W + + S +
Sbjct: 213 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--------DKFLVSAAADGS 264
Query: 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
R ++ + + F + ++ L G ++Q +++ + ++ +
Sbjct: 265 IRGWDANDYSRKFSYHHTNLSAITTFYVS-DNILVSGSENQFNIYNLRSGKLVHANI-LK 322
Query: 628 GLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + F L+A D +
Sbjct: 323 DADQIWSVNFK-GKTLVAAVEKDGQSFL 349
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.2 bits (113), Expect = 3e-06
Identities = 31/337 (9%), Positives = 78/337 (23%), Gaps = 56/337 (16%)
Query: 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411
H+ ++V + + + ++A V K +
Sbjct: 4 LKAGHE-YMIVTNYPNNLHVVDVASDT--VYKSCVM----------------PDKFGPGT 44
Query: 412 VAWSPDGNYVGVA----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+PD V + I L + + S ++ A + K +
Sbjct: 45 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 104
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKI------ 520
+L + + +L F + + ++ A DG +
Sbjct: 105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
Query: 521 -KAWLYDT--------MGSRVDYDAPGHWCTTMLYSADGSRLFSC-------------GT 558
T + + FS
Sbjct: 165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224
Query: 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618
+ D + + G + + G +++ +D+
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK-DPNQIYGVLNRLAKYDLKQRK 283
Query: 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
++ + + + F K+G+ L + N +
Sbjct: 284 LIKAANL-DHTYY--CVAFDKKGDKLYLGGTFNDLAV 317
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.3 bits (103), Expect = 6e-05
Identities = 21/237 (8%), Positives = 56/237 (23%), Gaps = 25/237 (10%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
G ++ S P + + + ++ + +++ A
Sbjct: 86 EVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRL----EVFSTADGLEAKPVRT 140
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-------------- 447
F +P V + + DG+ + + + + + L +
Sbjct: 141 F-PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 199
Query: 448 ---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH 504
H ++ + + T +L K E +
Sbjct: 200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 259
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561
++ + + H + + G +L+ GT D
Sbjct: 260 SPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 20/172 (11%), Positives = 46/172 (26%), Gaps = 14/172 (8%)
Query: 837 IALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTED 894
AL Y++ + + ++ + V + + P P + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 895 STIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE--T 952
I+ +DT + + G+ + D +
Sbjct: 62 GDIY----------GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQ 111
Query: 953 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1004
+L + K R+ ++ D L A + DG++ V
Sbjct: 112 RLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP 163
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.1 bits (113), Expect = 4e-06
Identities = 29/359 (8%), Positives = 75/359 (20%), Gaps = 35/359 (9%)
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNP 300
AAA+ A A G + + + + +T + + V T G
Sbjct: 9 AAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSC-AGCGVTLGHSLGAFL 67
Query: 301 DHEQL---MKRLRPAPSAEEVTYSSSRHQT---WSLDDLPRTVAVSLHQGSTVI------ 348
A ++ + R + + L
Sbjct: 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH 127
Query: 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408
+ S LL + + ++ A+C + +
Sbjct: 128 IIGNCASSACLLFFLFGSSAAAGLSVPGA-----SDDQLTKSASCFHIHPGA-------A 175
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468
+ S + Q+ A + +
Sbjct: 176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQ 235
Query: 469 VTCGDDKLIKVWELSGRKLFNFEGHEAP--VYSICPHHKENIQFIFS-----TAIDGKIK 521
+ G + + + + I + + +
Sbjct: 236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295
Query: 522 AWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579
G + GH ++ + DG+ ++ L ++ + + +
Sbjct: 296 TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV--LDIYDAASDQDQSS 352
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.0 bits (113), Expect = 4e-06
Identities = 32/291 (10%), Positives = 73/291 (25%), Gaps = 31/291 (10%)
Query: 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR 377
+ + +G TV + +HP + ++ S + + ++
Sbjct: 125 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE--HPEFIVNVK 182
Query: 378 DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437
+ K+ + + ++ W Y A +
Sbjct: 183 E-----TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237
Query: 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLC---------VVTCGDDKLIKVWELSGRKLF 488
L + F +P ++ + + +K+
Sbjct: 238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 297
Query: 489 NFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWL--YDT-----------MGSRVDY 534
+G I H K ++ + D +I + +D + D
Sbjct: 298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL 357
Query: 535 DAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
Y+ G + FS K+ S LV ++ +K R
Sbjct: 358 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.6 bits (99), Expect = 2e-04
Identities = 24/246 (9%), Positives = 55/246 (22%), Gaps = 24/246 (9%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV-GSSNGEITLWELAMRDRLVSKPFK 386
W + ++ + V + L V G+I L + + +
Sbjct: 2 WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-- 59
Query: 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS- 445
+V S G Y+ V I + +
Sbjct: 60 ------------------TGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 101
Query: 446 -QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH 504
+ Y ++ + + + V + H
Sbjct: 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + I ++ + + +T G + + T+ L G
Sbjct: 162 EPRVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY 220
Query: 565 FLVEWN 570
F+ N
Sbjct: 221 FMTAAN 226
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 7e-06
Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 8/228 (3%)
Query: 325 HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKP 384
+L TV + S+D L+ G +NG + + EL+ L +
Sbjct: 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFE 222
Query: 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444
+ + + + + G ++ +
Sbjct: 223 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 282
Query: 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPH 503
AH V L+F + + + G D ++ W++ + ++ H +
Sbjct: 283 LGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
+ +L S + D C D S
Sbjct: 341 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV---CLDRS 385
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 4e-05
Identities = 18/173 (10%), Positives = 41/173 (23%), Gaps = 21/173 (12%)
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN------------FE 491
+ AH + ++ + V+C D +KVW+ N
Sbjct: 7 ANAGKAHDADIFSVSAC-NSFT---VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
H V + + +T+ G + + +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFY--RITREDETKKVIFEKLDLLDSDMKKH 120
Query: 552 RLFSCGTSKDGDSFLVEW---NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601
++ D L + +GT + + + + L
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 36/349 (10%), Positives = 90/349 (25%), Gaps = 55/349 (15%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H + S+ S + S +G + +W+ + D K S S
Sbjct: 13 HDAD-IFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSY------SHFVHKSG 62
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR-------QHSQIDAHVGAV 454
V + + + + V + Y ++ + D +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 455 NDLAFAYPNKLLC---VVTCGDDKLIKVWEL--SGRKLFNFEGHEAPVYSICPHHKENI- 508
L + N L +V +W+ + + + +P + + +
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182
Query: 509 -------------QFIFSTAIDGKIK---------------AWLYDTMGSRVDYDAPGHW 540
I + +G ++ + +
Sbjct: 183 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242
Query: 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQN 598
+ + + D + + + + G S+ V+ +
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFSKEGNLLA 645
+ G D +++FWD+ +T+ + L + G+ LA
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.7 bits (106), Expect = 2e-05
Identities = 29/291 (9%), Positives = 77/291 (26%), Gaps = 24/291 (8%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRL---------------VSKPFK 386
H + + ++ + L + G I W+++ +
Sbjct: 11 HNKA-ITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ 446
++ ++ S VA +G+A + + +
Sbjct: 69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
Query: 447 IDAHV---GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503
V + +A + + + V + + H A + S+
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563
+ + + + + + + + + + G S D
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG-SLDNS 247
Query: 564 SFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKFWD 613
+ WN ++ + + V + ++ G+DS IKFW+
Sbjct: 248 VIV--WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 34/315 (10%), Positives = 83/315 (26%), Gaps = 39/315 (12%)
Query: 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416
QT+ + + +I +W L L + DVP V + SP
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGAL-----------------TLTQVVDVPGQVQPMVVSP 46
Query: 417 DGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT--CGD 473
D Y+ V + + Y A + + A G++ ++ + + + V + G+
Sbjct: 47 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN 106
Query: 474 DKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD 533
+ ++ + + + +S ++ + + + L+
Sbjct: 107 VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA---LKQDRICLFTVSDDGHL 163
Query: 534 YDAPGHWCTTMLYSADGSRLFSC------GTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587
TT+ + +F ++ S V +
Sbjct: 164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 223
Query: 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL---------PR-LRF 637
+ + ++ + S +G + + PR
Sbjct: 224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV 283
Query: 638 SKEGNLLAVTTADNG 652
G L +
Sbjct: 284 DHSGKYLIAAGQKSH 298
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (104), Expect = 6e-05
Identities = 22/216 (10%), Positives = 49/216 (22%), Gaps = 9/216 (4%)
Query: 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFA 460
D +V S G Y+ V + + + ++I
Sbjct: 59 DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW-MKEPTTVAEIKIGSEARSIETSKMEG 117
Query: 461 YPNKLLCVVTCGDDKLIKVWELSGRK-LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519
+ +K + + + + H + + I ++ +
Sbjct: 118 WEDKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 176
Query: 520 IKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578
+ +T VDY + TT + + L G F+ N +
Sbjct: 177 FIVNVKETGKILLVDYTDLNNLKTTEISA--ERFLHDGGLDGSHRYFITAANARNKLVVI 234
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614
+ + T A
Sbjct: 235 DTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 270
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (95), Expect = 7e-04
Identities = 26/179 (14%), Positives = 52/179 (29%), Gaps = 26/179 (14%)
Query: 841 KNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 900
+N V G+I+L + T+++ T + A + + D +++
Sbjct: 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMI 88
Query: 901 NVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTG-DTRVQFNADQVRMLVVHE--TQLAIY 957
D W K + I G +T + + Q I
Sbjct: 89 ------------DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136
Query: 958 DASKMERIRQWT-------PQDALSAPISCAVYSC--NSQLVFATFCDGNIGVFDADTL 1007
D +E + + Q+ P A+ + + + G I + D L
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 195
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 34/345 (9%), Positives = 84/345 (24%), Gaps = 45/345 (13%)
Query: 316 EEVTYSSSRHQTWSLDDLP-----RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEIT 370
+ + +R + D + + ++ G T + P + + + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKSESLV 59
Query: 371 LWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430
+L + L + S+ A SPDG +A + +
Sbjct: 60 KIDLVTGETLGRIDLSTPEERVK--------------SLFGAALSPDGKT--LAIYESPV 103
Query: 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF 490
+L + + DA + AF P ++ + D + +
Sbjct: 104 RLELTHFEVQPTRVALYDAETLSRRK-AFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162
Query: 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550
G + P + D +++ G
Sbjct: 163 AGT---LVEDKPIQSWEAETYAQ--PDVLAVWNQHESSGVMATPFYTARKDIDPADPT-- 215
Query: 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610
+ L+ + G + R A G + ++
Sbjct: 216 ----------AYRTGLLTMDLETGEMAMR--EVRIMDVFYFSTAVNPAKTRAFGAYNVLE 263
Query: 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+D++ + + S +G+ + + A
Sbjct: 264 SFDLEKNASIKRVPL-PHSYY--SVNVSTDGSTVWLGGALGDLAA 305
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 3e-04
Identities = 11/95 (11%), Positives = 21/95 (22%), Gaps = 10/95 (10%)
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE 506
I H + L +++ D I W S + H + S+ +
Sbjct: 9 ISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKAQ 58
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541
I ++ A
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 93
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 7e-04
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444
++ + + P + + V I +YS + +
Sbjct: 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK- 252
Query: 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480
++AH VN+L + P+ L V+ G D IK W
Sbjct: 253 -ALNAHKDGVNNLLWETPSTL---VSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (88), Expect = 0.003
Identities = 31/287 (10%), Positives = 72/287 (25%), Gaps = 28/287 (9%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL---------AMRDRLVSKPFKIWDMAA 392
H + ++ +P L+ GS +G I W + SK + ++
Sbjct: 12 HNKG-ITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 65
Query: 393 CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG 452
I K S +VA + + + V + + + ++
Sbjct: 66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 125
Query: 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIF 512
N + + G+ + A I E
Sbjct: 126 V-----SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG 180
Query: 513 STAIDGKIKA-----WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567
+ R W + + + D+ +
Sbjct: 181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 240
Query: 568 EWN-ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
++ + I + + N ++ + ++ G D+ IK W+
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.5 bits (90), Expect = 0.002
Identities = 23/305 (7%), Positives = 63/305 (20%), Gaps = 65/305 (21%)
Query: 408 SVSRVAWSPDGNYVGVA--------------------FTKHLIQLYSYAGSNDLRQHSQI 447
+ V D + F ++L +++ + +
Sbjct: 44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA 103
Query: 448 DAHV--------------------GAVNDLAFAYPNKLLC--------VVTCGDDKLIKV 479
+ + D + ++ + + I V
Sbjct: 104 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 163
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW-----LYDTMGSRVDY 534
+++ GRK+F + Y+ + ++ + + + +
Sbjct: 164 YDMEGRKIFAATTENSHDYAPAFDADS--KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 221
Query: 535 DAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ 592
P + + + R
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 281
Query: 593 FDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650
+ E + +D+ + + NL LR S + + V D
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN------NLTDLRLSADRKTVMVRKDD 335
Query: 651 NGFKI 655
Sbjct: 336 GKIYT 340
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.3 bits (87), Expect = 0.004
Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 17/149 (11%)
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI---- 401
V++ F + ++ + + + + DM S P
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR 267
Query: 402 ----FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDL 457
+ + S Y A K ++ Y ++ + DL
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDL 320
Query: 458 AFAYPNKLLCVVTCGDDKLIKVWELSGRK 486
+ K + + DD I + L +
Sbjct: 321 RLSADRKTV--MVRKDDGKIYTFPLEKPE 347
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.3 bits (87), Expect = 0.004
Identities = 28/267 (10%), Positives = 72/267 (26%), Gaps = 29/267 (10%)
Query: 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS 394
V ++ GS + P + + + + ++++ + A + + + P
Sbjct: 22 NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81
Query: 395 LPFQASIFKDVPIS----------------------VSRVAWSPDGNYVGVAFTKHLIQL 432
P ++ S +A SPDG + V
Sbjct: 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 433 YSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492
+ + + + P+ V D I V + + +
Sbjct: 142 VINTVTKAVINTVSVGRSPKGI----AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK 197
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552
EA I + + ++ + + + G + + DG +
Sbjct: 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKK 257
Query: 553 LFSCGTSKDGDSFLVEWNESEGTIKRT 579
++ + + + + + TI T
Sbjct: 258 VYVALS---FCNTVSVIDTATNTITAT 281
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1096 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.85 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.79 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.72 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.66 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.6 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.53 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.51 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.42 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.42 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.4 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.09 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.08 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.07 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.07 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.04 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.01 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.92 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.87 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.82 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.82 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.79 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.7 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.69 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.61 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.51 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.32 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.24 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.22 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.16 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.68 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.67 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.49 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.46 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.38 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.35 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.34 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.3 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.27 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.26 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.24 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.18 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.14 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.13 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.13 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.11 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 97.08 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.08 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.91 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.88 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.87 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 96.64 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.54 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 96.09 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.06 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.58 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.89 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.55 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 93.03 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.24 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 87.54 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 86.78 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.36 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 83.07 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 82.64 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 82.2 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 81.58 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.7e-37 Score=336.55 Aligned_cols=292 Identities=13% Similarity=0.192 Sum_probs=253.2
Q ss_pred ceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 336 ~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
+.+++++|...|+|++|||+|+ +||+|+ ||.|+|||+.++..... .......+|.+.|.+++|+
T Consensus 43 ~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~s 106 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKLL 106 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEEC
T ss_pred eEEEECCCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEEc
Confidence 5577889999999999999999 699986 89999999987654321 1112256799999999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~ 494 (1096)
|||++|++|+.||.|++||+...... ....+.+|...|.+++|+|++. ++++++.|+.|++|+ .++++.....+|.
T Consensus 107 ~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~ 183 (337)
T d1gxra_ 107 PDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence 99999999999999999998765432 2235778999999999999999 899999999999999 8888889999999
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
..|.+++|++ ++..+++++.||.+++||+++++....+. +...|.+++|+|+++++++++. ++.+++||+.++
T Consensus 184 ~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~~ 256 (337)
T d1gxra_ 184 DGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKP 256 (337)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSS
T ss_pred cccccccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----cccccccccccc
Confidence 9999999976 66899999999999999999887766554 5678999999999999999987 999999999988
Q ss_pred eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
+... ...|.. .+.+++|+|++++|++++.||.|++||..+++.+..+... ..|.+++|+|++++|++|+.||.|+
T Consensus 257 ~~~~-~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~~I~ 331 (337)
T d1gxra_ 257 DKYQ-LHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKKAT 331 (337)
T ss_dssp CEEE-ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSCEE
T ss_pred cccc-cccccc-ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 7654 455655 7999999999999999999999999999999998877643 3799999999999999999999999
Q ss_pred EEEc
Q 001343 655 ILAN 658 (1096)
Q Consensus 655 iwd~ 658 (1096)
+||+
T Consensus 332 vWdl 335 (337)
T d1gxra_ 332 VYEV 335 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.5e-35 Score=321.65 Aligned_cols=282 Identities=21% Similarity=0.377 Sum_probs=260.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+|+++|++++|+|+++ +||||+.||+|+|||+.+++.+.. +.+|...|.+++|+|++.++
T Consensus 15 GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~~~~~ 74 (317)
T d1vyhc1 15 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLL 74 (317)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred CCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeecccccc
Confidence 5999999999999999 799999999999999999887653 77899999999999999999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++++.++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++|| .+++.+..+.+|...+.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (317)
T d1vyhc1 75 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 149 (317)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcceee
Confidence 999999999999988876554 4678999999999999999 899999999999999 8899999999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC--------------------CEEEEEeecc
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--------------------SRLFSCGTSK 560 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~--------------------~~l~~~~~~~ 560 (1096)
++++ ++.+|++++.||.|++|++.+......+..+...+.++.++|++ ..+++++.
T Consensus 150 ~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 225 (317)
T d1vyhc1 150 RPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-- 225 (317)
T ss_dssp EECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--
T ss_pred eccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC--
Confidence 9976 66899999999999999999999999999999999999998764 35777775
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
++.|++||..+++.+.++.+|.. .+.+++++|++++|++|+.||.|++||+.+++.+..+..|.. .|++++|+|+
T Consensus 226 --d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~~s~~ 300 (317)
T d1vyhc1 226 --DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKT 300 (317)
T ss_dssp --TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSS
T ss_pred --CCEEEEEECCCCcEEEEEeCCCC-CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEcCC
Confidence 89999999999999999999887 899999999999999999999999999999999999988765 8999999999
Q ss_pred CCEEEEEECCCcEEEEE
Q 001343 641 GNLLAVTTADNGFKILA 657 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd 657 (1096)
+++|++|+.||+|++||
T Consensus 301 ~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 301 APYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEETTSEEEEEC
T ss_pred CCEEEEEeCCCeEEEeC
Confidence 99999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.2e-35 Score=316.10 Aligned_cols=286 Identities=14% Similarity=0.213 Sum_probs=245.7
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
+.+.+.+++++|+|+ .||.+ .++.|.+||+.++.... .+.+|...|++++|+|+|++||
T Consensus 16 ~r~~~~~~a~~~~g~-~l~~~-~~~~v~i~~~~~~~~~~-------------------~~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGD-KIQYC-NGTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSS-EEEEE-ETTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEcCCCC-EEEEE-eCCEEEEEECCCCceeE-------------------EEcCCCCCEEEEEEeCCCCeEe
Confidence 455678899999999 47766 47789999999877654 2788999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC--CCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~--d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
+|+.||+|+|||+.+++..... .+.+|.+.|.+++|+|+++ +|++++. ++.+++|+ .+++....+.+|...|++
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILKT-TIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEEE-EEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred ccccCceEeeeeeecccccccc-ccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 9999999999999987655322 4778999999999999999 7888875 46699999 888999999999999999
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
++|+|+++ ..+++|+.||.|++||+++.+.......|...|.++.++|+++++++++. ++.+++||..++.....
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGV 226 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred ccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----ccccccccccccccccc
Confidence 99987532 35889999999999999999988899999999999999999999999986 99999999999988877
Q ss_pred EcC-------cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 580 YAG-------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 580 ~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
+.. |.. .|.+++|+|++++|++|+.||.|++||+++++++..+..+... ....+.+.+++..|++++.||.
T Consensus 227 ~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 227 FEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp CBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred ccccccccccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence 653 444 7899999999999999999999999999999999988766432 2334455556678999999999
Q ss_pred EEEEEcC
Q 001343 653 FKILANA 659 (1096)
Q Consensus 653 i~iwd~~ 659 (1096)
|++||++
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999973
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-34 Score=325.87 Aligned_cols=307 Identities=16% Similarity=0.250 Sum_probs=243.8
Q ss_pred ceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 336 ~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
.+..+++|++.|+||+|||||+ +||+|+ |++|+|||+.+++.+.......... ............+|...|.+++|+
T Consensus 54 ~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~s 130 (388)
T d1erja_ 54 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS 130 (388)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEeeCCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeeccccccc-ccccccccccccCCCCCEEEEEEC
Confidence 3456678999999999999999 799986 9999999999998765411100000 000111112345788999999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~ 494 (1096)
|+|++|++|+.||.|++||...++.+. .+.+|...|.+++|++++. .+++++.++.+++|| .+.........+.
T Consensus 131 ~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 205 (388)
T d1erja_ 131 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIED 205 (388)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred CCCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeecccccccccccccc
Confidence 999999999999999999999887665 5778999999999999999 899999999999999 6666666666554
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-------eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEE
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~ 567 (1096)
. ..++.+.+ .++.+|++++.||.|++||.++......+ ..|...|.+++|+|++++|++++. ++.|+
T Consensus 206 ~-~~~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~ 279 (388)
T d1erja_ 206 G-VTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 279 (388)
T ss_dssp C-EEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred c-cccccccC-CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEE
Confidence 4 55555544 36689999999999999999988776544 345678999999999999999987 99999
Q ss_pred EEeCCCCee------------eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 568 EWNESEGTI------------KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 568 iwd~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
+||+.++.. ......|.. .+.+++|+|++++|++|+.||.|++||+.+++++..+.+|.. .|.++
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~ 356 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 356 (388)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEeccCCccccccccccccceeeecccccc-eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEE
Confidence 999976543 334445555 788999999999999999999999999999999999998765 88888
Q ss_pred EE------eCCCCEEEEEECCCcEEEEEcC
Q 001343 636 RF------SKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 636 ~~------s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
++ +|++.+|++|+.||+|++|+++
T Consensus 357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 75 6789999999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-33 Score=309.32 Aligned_cols=244 Identities=14% Similarity=0.184 Sum_probs=213.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccce--eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS--QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+|...|.|++|||+|++||+|+ ||.|+|||+.++....... ...+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeeccccccccc
Confidence 6999999999999999999987 7999999998765443322 3457999999999999999 899999999999999
Q ss_pred -c--CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 482 -L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 482 -~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
. +++....+.+|...+.+++|++ ++.++++++.|+.|++|++.+.+.......+...+.+++|++++..+++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~ 203 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4 3455677889999999999976 6689999999999999999999888888889999999999999999999987
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
++.+++||+++++.+..+.. .. .+.+++|+|+++.+++++.|+.+++||+.+++..... .+ ...|.+++|+
T Consensus 204 ----d~~v~i~d~~~~~~~~~~~~-~~-~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~--~~~i~~v~~s 274 (337)
T d1gxra_ 204 ----DNTVRSWDLREGRQLQQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH-LH--ESCVLSLKFA 274 (337)
T ss_dssp ----TSEEEEEETTTTEEEEEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC-CC--SSCEEEEEEC
T ss_pred ----cccccccccccceeeccccc-cc-ceEEEEEcccccccceecccccccccccccccccccc-cc--ccccceEEEC
Confidence 99999999999998887753 33 7899999999999999999999999999988776433 33 4489999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|++++|++++.||.|++||+.++
T Consensus 275 ~~g~~l~s~s~Dg~i~iwd~~~~ 297 (337)
T d1gxra_ 275 YCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999999999998665
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-33 Score=306.08 Aligned_cols=248 Identities=20% Similarity=0.315 Sum_probs=228.6
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
..|.||.+.|++|+|+|++++||+|+.||+|+|||+.+++.+. ++.+|.+.|.+++|+|++. ++++++.++.+.+
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~---~~~~h~~~V~~~~~~~~~~--~~~~~~~~~~~~~ 85 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKL 85 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCE
T ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE---EEeCCCCcEEEEeeecccc--ccccccccccccc
Confidence 3589999999999999999999999999999999999988776 6789999999999999999 8999999999999
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
|+ ...+....+.+|...+.++.+++ ++..+++++.|+.+++||++++.....+..+...+.+++|+++++++++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (317)
T d1vyhc1 86 WDFQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 163 (317)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccccccccccccceeeeccC--CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC
Confidence 99 88888888899999999999977 5679999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC--------------------CCEEEEEEcCCeEEEEeCCCCe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--------------------QNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
++.|++|+..+++....+.++.. .+..+.++|+ +..+++++.|+.|++|++.+++
T Consensus 164 ----d~~v~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 238 (317)
T d1vyhc1 164 ----DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238 (317)
T ss_dssp ----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred ----CCeEEEEeeccceeeEEEecCCC-CceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc
Confidence 99999999999999999998877 7788888765 3468899999999999999999
Q ss_pred EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+..+..+.. .|.+++|+|++++|++++.||.|++||+.++
T Consensus 239 ~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 279 (317)
T d1vyhc1 239 CLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK 279 (317)
T ss_dssp EEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEEEeCCCC--CEEEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence 9999988765 8999999999999999999999999998665
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.1e-33 Score=305.03 Aligned_cols=292 Identities=18% Similarity=0.274 Sum_probs=255.6
Q ss_pred cceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 335 ~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
.+..++|. |.+.|+|++|+|+++ +||||+.||+|+|||+.+++.+.. +.+|...|.+++
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~ 104 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeE
Confidence 34567776 999999999999999 799999999999999999987754 677999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEccCCCcc-ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee
Q 001343 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1096)
Q Consensus 414 ~spd~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 491 (1096)
|+|+++++++|+.|+.+++|+....... .....+.+|...........+. .++.+..|.....|+ ..........
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (340)
T d1tbga_ 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred eeccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccc
Confidence 9999999999999999999998765433 2233567888887777776654 578888899999999 7777777777
Q ss_pred CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.+...+....+.+ .+.++++++.|+.|++||+++......+..|...|.+++|+|+++++++++. ++.|++||+
T Consensus 182 ~~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~ 255 (340)
T d1tbga_ 182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred ccceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEee
Confidence 7888888888765 5579999999999999999999999999999999999999999999999987 999999999
Q ss_pred CCCeeeEEEcCcC-ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 572 SEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 572 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
........+.... ...+..++|+|++++|++|+.||.|++||+.+++.+..+.+|.. .|++++|+|++.+|++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~D 333 (340)
T d1tbga_ 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETT
T ss_pred cccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccC
Confidence 9998887764332 23688999999999999999999999999999999999988765 89999999999999999999
Q ss_pred CcEEEEE
Q 001343 651 NGFKILA 657 (1096)
Q Consensus 651 g~i~iwd 657 (1096)
|.|++||
T Consensus 334 g~v~iWd 340 (340)
T d1tbga_ 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.9e-33 Score=301.53 Aligned_cols=273 Identities=14% Similarity=0.225 Sum_probs=228.9
Q ss_pred CCCceeecCCCce-eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccc
Q 001343 314 SAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAA 392 (1096)
Q Consensus 314 ~~~~v~~~~~~~~-~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 392 (1096)
..+.++|..+... +|+++........ .+|.+.|+|++|+|+|+ +||+|+.||+|+|||+.+++....
T Consensus 28 ~g~~l~~~~~~~v~i~~~~~~~~~~~~-~~H~~~v~~~~~sp~g~-~latg~~dg~i~iwd~~~~~~~~~---------- 95 (311)
T d1nr0a1 28 AGDKIQYCNGTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK---------- 95 (311)
T ss_dssp TSSEEEEEETTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE----------
T ss_pred CCCEEEEEeCCEEEEEECCCCceeEEE-cCCCCCEEEEEEeCCCC-eEeccccCceEeeeeeeccccccc----------
Confidence 3455666654433 8888765333332 35999999999999999 799999999999999998765432
Q ss_pred cCccccccccccCCCCEEEEEEcCCCCEEEEEECC--CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEE
Q 001343 393 CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT 470 (1096)
Q Consensus 393 ~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s 470 (1096)
..+.+|.+.|.+++|+|++++|++++.+ ..++||++++++... .+.+|.+.|++++|+|+++. .|++
T Consensus 96 -------~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~---~l~~h~~~v~~v~~~~~~~~-~l~s 164 (311)
T d1nr0a1 96 -------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG---NLTGQARAMNSVDFKPSRPF-RIIS 164 (311)
T ss_dssp -------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB---CCCCCSSCEEEEEECSSSSC-EEEE
T ss_pred -------cccccccCccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccee-eecc
Confidence 1267799999999999999999999864 569999999987766 57899999999999999985 6899
Q ss_pred EeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-------CCCCcEE
Q 001343 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCT 542 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~ 542 (1096)
|+.|+.|++|| .+++....+.+|..+|+++.++| ++.++++++.||.|++||+.+......+. +|...|.
T Consensus 165 gs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p--~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~ 242 (311)
T d1nr0a1 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 242 (311)
T ss_dssp EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred cccccccccccccccccccccccccccccccccCc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999 88899999999999999999977 67899999999999999999887766543 3567899
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
+++|+|++++|++++. |+.|++||++++++++++..+.......+.+.++++.+++++.||.|++||.+
T Consensus 243 ~~~~s~~~~~l~tgs~----Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 243 GLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred ccccCCCCCEEEEEeC----CCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 9999999999999987 99999999999999999987765344445556667789999999999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8e-33 Score=312.04 Aligned_cols=345 Identities=15% Similarity=0.260 Sum_probs=260.5
Q ss_pred EEEECCCeEEEEEccCCCcccc-ceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~-~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
+.+..++...+|+....+.... +....+|.+.|++++|+|||+ +|++|+ |++|++|| .+++.+..+..+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence 3566778899999776554331 122346999999999999999 899987 89999999 889998888766543222
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
... + .......+...|.+++|+|++++|++++. ++.|++||...++.+..
T Consensus 109 ~~~--------~------------------~~~~~~~~~~~V~~l~~s~~~~~l~s~~~----dg~v~i~~~~~~~~~~~ 158 (388)
T d1erja_ 109 PEN--------L------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAE----DRLIRIWDIENRKIVMI 158 (388)
T ss_dssp ------------------------------------CCCCBEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEE
T ss_pred ccc--------c------------------ccccccCCCCCEEEEEECCCCCcceeccc----ccccccccccccccccc
Confidence 110 0 00112345668999999999999999987 99999999999999999
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CCCEEEEEECCCcEEEEEc
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~ 658 (1096)
+.+|.. .+.++.+++++..+++++.++.+++||..+.........+. ...++.+++ ++.+|++++.|+.|++|+.
T Consensus 159 ~~~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 234 (388)
T d1erja_ 159 LQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234 (388)
T ss_dssp ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred cccccc-cccccccccccccccccccceeeeeeecccccccccccccc---ccccccccCCCCCeEEEEcCCCeEEEeec
Confidence 999887 89999999999999999999999999999988887776654 345555555 8899999999999999998
Q ss_pred CCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCc
Q 001343 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1096)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i 738 (1096)
.++. ....+...
T Consensus 235 ~~~~-~~~~~~~~------------------------------------------------------------------- 246 (388)
T d1erja_ 235 ETGF-LVERLDSE------------------------------------------------------------------- 246 (388)
T ss_dssp TTCC-EEEEEC---------------------------------------------------------------------
T ss_pred ccCc-cceeeccc-------------------------------------------------------------------
Confidence 7762 11111100
Q ss_pred cceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcc
Q 001343 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1096)
Q Consensus 739 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~ 818 (1096)
.....+ |...|.+++|+|++..|++++.||.+++|++.......... ....+
T Consensus 247 ---------------~~~~~~---h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------~~~~~ 298 (388)
T d1erja_ 247 ---------------NESGTG---HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK----------TPNSG 298 (388)
T ss_dssp -------------------CC---CSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------------------
T ss_pred ---------------cccccC---CCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccc----------ccccc
Confidence 001222 88899999999999999999999999999986533211100 01112
Q ss_pred ccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEE------ecCCCcEEEEe
Q 001343 819 LLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAF------HPQDNNIIAIG 891 (1096)
Q Consensus 819 ~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~------s~~d~~~l~s~ 891 (1096)
.+.. .... |...|.+++|+|+|++|++|+ ||.|++||+.+++++.++++|.+.|+++++ +| ++++|++|
T Consensus 299 ~~~~-~~~~--~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~ 374 (388)
T d1erja_ 299 TCEV-TYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATG 374 (388)
T ss_dssp CEEE-EEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEE
T ss_pred ceee-eccc--ccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCC-CCCEEEEE
Confidence 2222 2223 889999999999999999998 799999999999999999999999999975 67 78999999
Q ss_pred eCCCeEEEEeec
Q 001343 892 TEDSTIHIYNVR 903 (1096)
Q Consensus 892 ~~dg~i~iw~~~ 903 (1096)
+.||+|+||+++
T Consensus 375 s~Dg~I~iW~~~ 386 (388)
T d1erja_ 375 SGDCKARIWKYK 386 (388)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCEEEEEeee
Confidence 999999999986
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-33 Score=315.56 Aligned_cols=289 Identities=16% Similarity=0.118 Sum_probs=233.0
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
.++|+|++|||+|+ +||+|+.||.|+|||+.+++.... ..+.+|.+.|.+++|+|++++|++
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEE-----------------EEecCCCCCEEEEEECCCCCEEEE
Confidence 46899999999999 799999999999999987764321 237889999999999999999999
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce----EEEeeCCCCCeE
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK----LFNFEGHEAPVY 498 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~----~~~~~~~~~~v~ 498 (1096)
|+.|++|+|||+.++..... ..+.+|...|++++|+|+++ .|++|+.|++|++|+ ..... .....+|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~~~-~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWKPT-LVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEEEE-EECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeecccccccc-cccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 99999999999987654332 24678999999999999999 899999999999999 44432 234567899999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCC------------------eeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG------------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
+++|+| ++.+|++|+.||+|++|+..... .......+...|.+++|+|+++++++++.
T Consensus 146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-- 221 (371)
T d1k8kc_ 146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-- 221 (371)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--
T ss_pred cccccc--cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc--
Confidence 999977 67899999999999999976432 23345567778999999999999999986
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC--CeEEEEee--------------
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTD-------------- 624 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~-------------- 624 (1096)
++.|++||+.+++.+..+..|.. ++.+++|+|++.+|++ +.|+.+++|.... +.......
T Consensus 222 --d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~la~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
T d1k8kc_ 222 --DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297 (371)
T ss_dssp --TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEE-ETTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred --CCcceEEeeecccceeeeecccc-cceeeeecCCCCEEEE-EcCCceEEEEeeCCCceEEEeeeecCccccccccccc
Confidence 89999999999999999999877 8999999999876665 4577766665433 22111000
Q ss_pred -----------------------cCCCCCCccEEEEeCCC----CEEEEEECCCcEEEEEcCCC
Q 001343 625 -----------------------AEGGLPNLPRLRFSKEG----NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 625 -----------------------~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~ 661 (1096)
...|...|+++++.+.+ ..+++++.||.|++||+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred eeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence 00134578899998744 46899999999999999654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-32 Score=305.36 Aligned_cols=343 Identities=16% Similarity=0.252 Sum_probs=251.5
Q ss_pred cccccCCCCE-EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 400 SIFKDVPISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 400 ~~~~~h~~~V-~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
.+|+||...| +|++| ++++||+|+.||+|+|||+.+++.+. ++.+|.+.|++++|+|++ +|++|+.|++|+
T Consensus 6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~ 77 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVR 77 (355)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEE
T ss_pred EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEecccccc
Confidence 3589998875 66655 68899999999999999999987766 688999999999999864 699999999999
Q ss_pred EEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
+|+ ...+.......+............+++.++++++.||.|++||+................ .....+.
T Consensus 78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~-------- 148 (355)
T d1nexb2 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPE-------- 148 (355)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCTT--------
T ss_pred cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceeccc--------
Confidence 999 777777666655555555544445577899999999999999988765443222111110 0011111
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1096)
...........+.. .+ ..+.++++.++++..|+.|++||+.+++.+.....+.. .+.++.|
T Consensus 149 --------------~~~~~~~~~~~~~~-~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~ 209 (355)
T d1nexb2 149 --------------ENPYFVGVLRGHMA-SV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIY 209 (355)
T ss_dssp --------------TCTTEEEEEECCSS-CE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEE
T ss_pred --------------cccceeeeeeeccc-cc--cccccccceeeeecccceeeeeecccccceeeeecccc--ccccccc
Confidence 11111222223322 23 34556788999999999999999999999888876655 7899999
Q ss_pred eCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccC
Q 001343 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (1096)
Q Consensus 638 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~ 717 (1096)
+|++..+++++.|+.|++|+..++ ....
T Consensus 210 ~~~~~~~~~~~~d~~i~i~d~~~~-~~~~--------------------------------------------------- 237 (355)
T d1nexb2 210 DHERKRCISASMDTTIRIWDLENG-ELMY--------------------------------------------------- 237 (355)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTC-CEEE---------------------------------------------------
T ss_pred cccceeeecccccceEEeeecccc-cccc---------------------------------------------------
Confidence 999999999999999999998765 1111
Q ss_pred CCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCc
Q 001343 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (1096)
Q Consensus 718 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~ 797 (1096)
.+.+ |...|.++++++ +.+++++.||.|++|++....
T Consensus 238 --------------------------------------~~~~---h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 238 --------------------------------------TLQG---HTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp --------------------------------------EECC---CSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC
T ss_pred --------------------------------------cccc---cccccccccccc--ceeeeeecccccccccccccc
Confidence 1223 667777887764 568899999999999874311
Q ss_pred cCCCCceeeecCccccccCccccccccccCCCcCCCeeee-eecCCCcEEEEecCCeEEEEEcccceEEE-eecCCCCCe
Q 001343 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI-ALSKNDSYVMSATGGKISLFNMMTFKVMT-TFMSPPPAS 875 (1096)
Q Consensus 798 ~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l-~~s~dg~~la~~~dg~v~iwd~~~~~~~~-~~~~h~~~i 875 (1096)
. .+.+ |...+.++ ++++++++|++|+||.|+|||+++|+++. .+.+|...|
T Consensus 275 ----------------------~---~~~~--~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V 327 (355)
T d1nexb2 275 ----------------------R---KFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQI 327 (355)
T ss_dssp ----------------------E---EEEE--ECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEE
T ss_pred ----------------------e---eccc--ccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCE
Confidence 0 1112 44445544 56889999999999999999999999885 577899999
Q ss_pred eEEEEecCCCcEEEEeeCCCeEEEEee
Q 001343 876 TFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1096)
Q Consensus 876 ~~l~~s~~d~~~l~s~~~dg~i~iw~~ 902 (1096)
++++|+| + .++++++.||+++||.+
T Consensus 328 ~~v~~~~-~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 328 WSVNFKG-K-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEEEET-T-EEEEEEESSSCEEEEEE
T ss_pred EEEEEcC-C-eEEEEEECCCcEEEEEE
Confidence 9999998 5 57888999999877754
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.7e-32 Score=296.85 Aligned_cols=290 Identities=9% Similarity=0.097 Sum_probs=228.3
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
.+.+++. |.++|+|++|+|+|+ +||+|+.||+|+|||+.+++.+.. ...+|...|.+++|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~ 63 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKT 63 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEE
T ss_pred ccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEe
Confidence 4566665 999999999999999 799999999999999999887653 13569999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCC
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 494 (1096)
+|+|+++ +++.|+.+++|+...............|...+.+++|+++++ +++++ .++.+++|+.. +..... ..
T Consensus 64 ~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~-~~~~i~~~~~~-~~~~~~--~~ 136 (299)
T d1nr0a2 64 TSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAA-CYKHIAIYSHG-KLTEVP--IS 136 (299)
T ss_dssp CTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEE-ESSEEEEEETT-EEEEEE--CS
T ss_pred eccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--ccccc-ccccccccccc-cccccc--cc
Confidence 9999755 566789999999876543332223456888999999999998 55554 46799999832 222222 33
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
..+.+++|+| ++.++++|+.||.|++||+++..... ....|...|.+++|+|+++++++++. ++.|++||+.+
T Consensus 137 ~~~~~~~~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~ 210 (299)
T d1nr0a2 137 YNSSCVALSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVAN 210 (299)
T ss_dssp SCEEEEEECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGGG
T ss_pred cccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccc
Confidence 4578888876 66899999999999999998776543 45567789999999999999999986 89999999988
Q ss_pred CeeeE---EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC-CCCccEEEEeCCCCEEEEEEC
Q 001343 574 GTIKR---TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 574 ~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
+.... .+.+|.. .+.+++|+|++.+|++|+.||.|++||+.++..........+ ...+.++.| +++.+|++++.
T Consensus 211 ~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~ 288 (299)
T d1nr0a2 211 NFELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQ 288 (299)
T ss_dssp TTEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEET
T ss_pred ccccccccccccccc-ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeC
Confidence 76543 3455655 899999999999999999999999999988655443333322 234555554 56789999999
Q ss_pred CCcEEEEEcC
Q 001343 650 DNGFKILANA 659 (1096)
Q Consensus 650 dg~i~iwd~~ 659 (1096)
|+.|++||+.
T Consensus 289 D~~i~iWdl~ 298 (299)
T d1nr0a2 289 DSNIKFWNVP 298 (299)
T ss_dssp TSCEEEEECC
T ss_pred CCEEEEEecc
Confidence 9999999973
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.8e-31 Score=294.56 Aligned_cols=248 Identities=16% Similarity=0.215 Sum_probs=222.2
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
+|.||.+.|++|+|+|++++||+|+.||+|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|+.+++|
T Consensus 50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeecc
Confidence 488999999999999999999999999999999999987766 5788999999999999999 89999999999999
Q ss_pred E-cCC----ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 481 E-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 481 d-~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
+ ... .....+.+|........... +..+.....++....|.................+....+.+.+.++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence 9 332 34566778887777666543 357888999999999998888888788888889999999999999999
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
++. ++.|++||+++++.+..+.+|.. .+.+++|+|++++|++|+.||.|++|++.....+..+....+...|.++
T Consensus 202 ~~~----d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 276 (340)
T d1tbga_ 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred eec----CceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE
Confidence 886 99999999999999999999887 8999999999999999999999999999999998888777666689999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+|+|++++|++|+.||.|++||+.++
T Consensus 277 ~~s~~~~~l~~g~~dg~i~iwd~~~~ 302 (340)
T d1tbga_ 277 SFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EECSSSCEEEEEETTSCEEEEETTTC
T ss_pred EECCCCCEEEEEECCCEEEEEECCCC
Confidence 99999999999999999999998665
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.5e-31 Score=292.25 Aligned_cols=281 Identities=16% Similarity=0.267 Sum_probs=222.3
Q ss_pred Eee-cCCCce-EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 339 VSL-HQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 339 ~~l-~h~~~V-~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
.+| +|.+.| +|++| +|+ +||||+.||+|+|||+.+++.+.+ +.+|.+.|.+++|+|
T Consensus 6 ~tL~GH~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~l~~s~ 63 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAH 63 (355)
T ss_dssp EEEECCSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEET
T ss_pred EEECCcCCCcEEEEEE--CCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EECCCCCEEEEEEcC
Confidence 344 498875 66665 566 799999999999999999987754 788999999999998
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE------
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN------ 489 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~------ 489 (1096)
+ .+|++|+.|++|++|+....+..... ....+...+....+.+++. .+++++.|+.|++|| ..+..+..
T Consensus 64 ~-~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 139 (355)
T d1nexb2 64 G-GILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHD 139 (355)
T ss_dssp T-TEEEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC-----------C
T ss_pred C-CEEEEEeccccccccccccccccccc-ccccccccccccccccccc--eeeeecCCCcEEEEEccCCceeccccccce
Confidence 5 58999999999999999987655432 2233445566777888888 899999999999999 55443221
Q ss_pred -----------------eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCE
Q 001343 490 -----------------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 490 -----------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 552 (1096)
...|...+.... + ++.+++++..|+.|++||+++.+.......+...+.++.+++++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~--~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (355)
T d1nexb2 140 YPLVFHTPEENPYFVGVLRGHMASVRTVS--G--HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR 215 (355)
T ss_dssp CCEEESCTTTCTTEEEEEECCSSCEEEEE--E--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTE
T ss_pred eccceeccccccceeeeeeeccccccccc--c--ccceeeeecccceeeeeecccccceeeeecccccccccccccccee
Confidence 223333444332 2 4579999999999999999999888888888889999999999999
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCc
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1096)
+++++. ++.|++||..++..+..+.+|.. .+.+++++ ++++++++.||.|++||+.++........ . .+
T Consensus 216 ~~~~~~----d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~--~~ 284 (355)
T d1nexb2 216 CISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH--T--NL 284 (355)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCSS-CCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEEC--T--TC
T ss_pred eecccc----cceEEeeeccccccccccccccc-cccccccc--cceeeeeecccccccccccccceeccccc--C--Cc
Confidence 999987 99999999999999999999987 78888886 47999999999999999998876544432 2 34
Q ss_pred cEE-EEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 633 PRL-RFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 633 ~~~-~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.++ .+++++.++++| .|+.|++||+.++
T Consensus 285 ~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg 313 (355)
T d1nexb2 285 SAITTFYVSDNILVSG-SENQFNIYNLRSG 313 (355)
T ss_dssp CCCCEEEECSSEEEEE-ETTEEEEEETTTC
T ss_pred eEEEEEcCCCCEEEEE-eCCEEEEEECCCC
Confidence 444 566777777666 4889999999877
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-30 Score=284.01 Aligned_cols=311 Identities=16% Similarity=0.234 Sum_probs=244.7
Q ss_pred EEee-cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 338 AVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 338 ~~~l-~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
.++| +|++.|.+ +++++|+ +||||+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|
T Consensus 9 ~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~~~ 67 (342)
T d2ovrb2 9 PKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMRD 67 (342)
T ss_dssp CEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEET
T ss_pred CEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEEeCC
Confidence 3444 59999865 4677888 699999999999999999988754 788999999999997
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
+ +|++|+.|+.+++|+........ ....+...+....+.+ . .++.+..|+.+.+|+ .+++....+..+..
T Consensus 68 ~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 138 (342)
T d2ovrb2 68 N--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGHVA 138 (342)
T ss_dssp T--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred C--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeecccc
Confidence 5 99999999999999998765443 3445566666665554 3 678899999999999 88888777766555
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
....... ....+++++.|+.|++||.........+..+...+..+. +++.++++++. ++.|++||++.++
T Consensus 139 ~~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~----dg~i~~~d~~~~~ 208 (342)
T d2ovrb2 139 AVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSL----DTSIRVWDVETGN 208 (342)
T ss_dssp CEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEET----TSCEEEEETTTCC
T ss_pred cceeecc----ccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeC----CCeEEEeecccce
Confidence 4443332 336789999999999999998888888887776665554 57889999987 9999999999999
Q ss_pred eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC-CCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
.+..+.+|.. .+.++.++ ++++++++.||.|++||+...+....+..+. +...+.++.+ +++++++++.||.|+
T Consensus 209 ~~~~~~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~ 283 (342)
T d2ovrb2 209 CIHTLTGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVK 283 (342)
T ss_dssp EEEEECCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEE
T ss_pred eeeEeccccc-ceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEE
Confidence 9999999877 67766665 5799999999999999999988887776543 3334444444 567999999999999
Q ss_pred EEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEe
Q 001343 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1096)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~ 694 (1096)
+||+.++ +.++.+.......+...|.+++|+|++.++++
T Consensus 284 iwd~~tg-~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~ 322 (342)
T d2ovrb2 284 LWDLKTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322 (342)
T ss_dssp EEETTTC-CEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred EEECCCC-CEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence 9999998 55555544444445667889999888776633
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.4e-31 Score=297.14 Aligned_cols=243 Identities=15% Similarity=0.123 Sum_probs=205.1
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
..+|+|++|+|||++||+|+.||.|+|||..+++.. ....+.+|.++|++++|+|+++ +|++|+.|++|++|| .++
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~-~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~ 83 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-QVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR 83 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-EEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE-EEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccc
Confidence 467999999999999999999999999999886532 2336889999999999999999 899999999999999 555
Q ss_pred c--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee----EEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 485 R--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 485 ~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
. ....+.+|...|.+++|+| +++.|++++.|+++++|+++...... ....+...|.+++|+|++++|++++.
T Consensus 84 ~~~~~~~~~~~~~~v~~i~~~p--~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 161 (371)
T d1k8kc_ 84 TWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161 (371)
T ss_dssp EEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccc--ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc
Confidence 4 3455678899999999977 66899999999999999988765433 23456778999999999999999987
Q ss_pred ccCCCCeEEEEeCCCC------------------eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 001343 559 SKDGDSFLVEWNESEG------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
|+.+++|+.... .......+|.. .+.+++|+|+++++++++.|+.|++||+.++..+
T Consensus 162 ----D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~ 236 (371)
T d1k8kc_ 162 ----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 236 (371)
T ss_dssp ----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred ----CcEEEEEeeccCccccccccccccccccceeeeeeccCccC-cEEEEEeecccccccccccCCcceEEeeecccce
Confidence 999999997642 34455566665 7889999999999999999999999999999999
Q ss_pred EEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
..+..+.. +|.+++|+|++.+|++| .|+.+++|.....
T Consensus 237 ~~~~~~~~--~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 237 ATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDSA 274 (371)
T ss_dssp EEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred eeeecccc--cceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence 99887765 89999999999887765 4777777766544
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.2e-31 Score=283.96 Aligned_cols=296 Identities=14% Similarity=0.139 Sum_probs=224.9
Q ss_pred CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecC
Q 001343 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
|+..+.+.+|.. .|++++|+|++++|++|+.||.|++||+.++. ..+.+.
T Consensus 2 g~~~~~~~GH~~--~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~-~~~~~~--------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFP--------------------------- 51 (299)
T ss_dssp TEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECSS---------------------------
T ss_pred CccceEcCCCCC--CcEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEc---------------------------
Confidence 566777887765 89999999999999999999999999987661 111100
Q ss_pred CCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCC
Q 001343 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (1096)
Q Consensus 697 s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 776 (1096)
.+ |...|.+++|+|++
T Consensus 52 -------------------------------------------------------------~~---h~~~v~~v~~~~~g 67 (299)
T d1nr0a2 52 -------------------------------------------------------------DV---HATMITGIKTTSKG 67 (299)
T ss_dssp -------------------------------------------------------------CS---CSSCEEEEEECTTS
T ss_pred -------------------------------------------------------------CC---CCCcEEEEEeeccc
Confidence 11 77889999999999
Q ss_pred ceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEE
Q 001343 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISL 856 (1096)
Q Consensus 777 ~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~i 856 (1096)
. +++++.|+.+++|+........ ... ...+ +...+.+++|+++|++++++.++.+++
T Consensus 68 ~-~~~~~~d~~v~~~~~~~~~~~~-----------------~~~---~~~~--~~~~~~~~~~s~~g~~~~~~~~~~i~~ 124 (299)
T d1nr0a2 68 D-LFTVSWDDHLKVVPAGGSGVDS-----------------SKA---VANK--LSSQPLGLAVSADGDIAVAACYKHIAI 124 (299)
T ss_dssp C-EEEEETTTEEEEECSSSSSSCT-----------------TSC---CEEE--CSSCEEEEEECTTSSCEEEEESSEEEE
T ss_pred e-eecccceeeEEEeccCCccccc-----------------ccc---cccc--ccccccccccccccccccccccccccc
Confidence 7 7788889999999875422100 000 1111 667889999999999999999999999
Q ss_pred EEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCce
Q 001343 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTR 936 (1096)
Q Consensus 857 wd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~ 936 (1096)
|+... ..... ....+.+++|+| ++++|++|+.||.|++||+.+++.. .+ ....|.. .|.+
T Consensus 125 ~~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~-------------~~-~~~~~~~-~i~~ 184 (299)
T d1nr0a2 125 YSHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVS-------------EV-KTIVHPA-EITS 184 (299)
T ss_dssp EETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEE-------------EE-EEEECSS-CEEE
T ss_pred ccccc--ccccc--cccccccccccc-ccccccccccccccccccccccccc-------------cc-ccccccc-cccc
Confidence 99533 33333 334678999999 8999999999999999999877610 11 1123443 8999
Q ss_pred EEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEcc
Q 001343 937 VQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1015 (1096)
Q Consensus 937 v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~ 1015 (1096)
++|+|++.+|++ +.|+.|++||+.++..+........|...|.+++|+|++++|++|+.||.|++||+.++........
T Consensus 185 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 264 (299)
T d1nr0a2 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264 (299)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEe
Confidence 999999999999 7899999999998876655443333489999999999999999999999999999998774433221
Q ss_pred ccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccC
Q 001343 1016 STYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 1016 ~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~ 1060 (1096)
.. + |...|. ++.| + ++++|++|+.||.|++||+.
T Consensus 265 ~~----~---~~~~v~--~~~~-~-~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 265 GA----H---AMSSVN--SVIW-L-NETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TS----S---TTSCEE--EEEE-E-ETTEEEEEETTSCEEEEECC
T ss_pred cC----C---CCCcEE--EEEE-C-CCCEEEEEeCCCEEEEEecc
Confidence 11 1 334455 3555 4 57899999999999999984
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.5e-30 Score=281.86 Aligned_cols=237 Identities=19% Similarity=0.269 Sum_probs=192.5
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.+++||.+.|.+ +++++|++||||+.||+|+|||+.++++++ ++.+|.+.|.+++|+++ +|++|+.|+++++
T Consensus 10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~---~~~~h~~~V~~v~~~~~----~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMRDN----IIISGSTDRTLKV 81 (342)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEETT----EEEEEETTSCEEE
T ss_pred EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE---EEeCCCCCEEEEEeCCC----ccccceecccccc
Confidence 358999999865 366789999999999999999999998776 68899999999999874 7999999999999
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
|+ ...........+...+...... ...+..+..|+.+.+|+..+......+......... ..+....++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 155 (342)
T d2ovrb2 82 WNAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAY 155 (342)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--EEECSSCEEEEET
T ss_pred cccccccceecccccceeEeeeecc----cccccccccceeEEEeecccccceeeeeccccccee--eccccceeeeecC
Confidence 99 6666666666666666665542 257889999999999999988877776655554433 3345567777775
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
++.+++||......+..+.+|.. .+ ..+.+++.++++++.||.|++||+..++.+..+..+.. .+.+++++
T Consensus 156 ----d~~i~~~d~~~~~~~~~~~~~~~-~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~ 226 (342)
T d2ovrb2 156 ----DFMVKVWDPETETCLHTLQGHTN-RV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELK 226 (342)
T ss_dssp ----TSCEEEEEGGGTEEEEEECCCSS-CE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEEE
T ss_pred ----CCeEEEeecccceeeEEEcCccc-cc--ccccCCCCEEEEEeCCCeEEEeecccceeeeEeccccc--ceeEEecC
Confidence 89999999999999999998865 44 34556788999999999999999999999988887754 67777665
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++|++++.|+.|++||....
T Consensus 227 --~~~l~s~s~d~~i~iwd~~~~ 247 (342)
T d2ovrb2 227 --DNILVSGNADSTVKIWDIKTG 247 (342)
T ss_dssp --TTEEEEEETTSCEEEEETTTC
T ss_pred --CCEEEEEcCCCEEEEEecccc
Confidence 469999999999999997544
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.9e-30 Score=281.16 Aligned_cols=288 Identities=12% Similarity=0.199 Sum_probs=225.7
Q ss_pred CceEEEEEcCCCCcEEEEEeCCC-eEEEEecCCCCeeecccceeecccccCccccccccccC-CCCEEEEEEcC--CCCE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSP--DGNY 420 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp--d~~~ 420 (1096)
..+++++|+|+|+ .||.++.+. .|+.|+........ ...+.+| ...|++++|+| +|.+
T Consensus 18 ~~~t~l~~~~~~~-~la~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~~ 79 (325)
T d1pgua1 18 NFTTHLSYDPTTN-AIAYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQY 79 (325)
T ss_dssp TCCCCCEEETTTT-EEEEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCeEEEEECCCCC-EEEEEeCCCEEEEEEeCCCCCccc-----------------eEEEeCCCCCCEEEEEEeeCCCCCE
Confidence 3578999999999 477665433 35556544332211 1125566 56899999998 6789
Q ss_pred EEEEECCCeEEEEEccCCCccccc-----eeecccccCEEEEEEecCCCcEEEEEEe--CCCcEEEEE-cCCceEEEeeC
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFNFEG 492 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~-----~~l~~h~~~v~~l~~s~d~~~~~l~s~s--~d~~i~iwd-~~~~~~~~~~~ 492 (1096)
||+|+.||+|+|||+..++..... ..+..|.++|.+++|+++++ .+++++ .++.+++|+ .+++++..+.+
T Consensus 80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
T d1pgua1 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWDSGNSLGEVSG 157 (325)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETTTCCEEEECCS
T ss_pred EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC--ccceeeccccceEEEEeecccccceeeee
Confidence 999999999999999876554322 13456889999999999999 555554 578899999 88999999999
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe---CCCCcEEEEEEcCC-CCEEEEEeeccCCCCeEEE
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~-~~~l~~~~~~~~~~~~i~i 568 (1096)
|...|.+++|++..+ .++++++.||.+++||....+...... .+...|.+++|+|+ +.++++++. ++.|++
T Consensus 158 h~~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~i 232 (325)
T d1pgua1 158 HSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISC 232 (325)
T ss_dssp CSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEE
T ss_pred ccccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceee
Confidence 999999999987532 467889999999999998776655543 34557999999997 578888876 999999
Q ss_pred EeCCCCeeeEEEcCcCccceEEEEEe---CCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC-CCEE
Q 001343 569 WNESEGTIKRTYAGFRKKSNGVVQFD---TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE-GNLL 644 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l 644 (1096)
||+++++.+..+.+|.. .+..+.|+ +++.+|++++.|+.|+|||+.+++.+..+..+.+...+..+++.+. +.+|
T Consensus 233 wd~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (325)
T d1pgua1 233 FDGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311 (325)
T ss_dssp EETTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred eeecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEE
Confidence 99999999999998876 44333333 6889999999999999999999999999888776444555555543 3588
Q ss_pred EEEECCCcEEEEEc
Q 001343 645 AVTTADNGFKILAN 658 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~ 658 (1096)
++++.||.|++||+
T Consensus 312 ~s~s~dg~i~vwdl 325 (325)
T d1pgua1 312 ISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEETTSCEEEEET
T ss_pred EEEECCCEEEEEEC
Confidence 99999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=7.9e-28 Score=262.60 Aligned_cols=253 Identities=12% Similarity=0.089 Sum_probs=194.1
Q ss_pred C-cccEEEEEEec--CCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeee
Q 001343 763 T-SSKVVRLLYTN--SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839 (1096)
Q Consensus 763 ~-~~~i~~l~~s~--~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~ 839 (1096)
| ...|++++|+| ++.++++++.||+|++|++........ .+ +. ....+.. |...|.+++|
T Consensus 61 h~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~-----------~~---~~-~~~~~~~--~~~~v~~v~~ 123 (325)
T d1pgua1 61 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS-----------VE---VN-VKSEFQV--LAGPISDISW 123 (325)
T ss_dssp TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE-----------EE---EE-EEEEEEC--CSSCEEEEEE
T ss_pred CCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee-----------ee---cc-ccccccc--ccCcEEEEEE
Confidence 6 46799999998 567888899999999999854321000 00 00 0011222 7889999999
Q ss_pred cCCCcEEEEec---CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCc-EEEEeeCCCeEEEEeeccceeeeeecccc
Q 001343 840 SKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVDELCVWSIDTW 915 (1096)
Q Consensus 840 s~dg~~la~~~---dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~-~l~s~~~dg~i~iw~~~~~~~~~w~~~~~ 915 (1096)
+++|+++++++ ++.+++|+..+++++..+.+|...|++++|+| ++. ++++++.||.+++|++...+
T Consensus 124 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~d~~v~~~d~~~~~--------- 193 (325)
T d1pgua1 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFK--------- 193 (325)
T ss_dssp CTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBE---------
T ss_pred CCCCCccceeeccccceEEEEeecccccceeeeecccccccccccc-cccceEEEeecccccccccccccc---------
Confidence 99999988776 35699999999999999999999999999999 555 57889999999999988766
Q ss_pred ccccceeeecCCCCCCCCCceEEEecC-CcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEe---eCCcEE
Q 001343 916 EKRKSVTIHIPAGKTPTGDTRVQFNAD-QVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS---CNSQLV 990 (1096)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~v~~v~fs~d-g~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s---~dg~~l 990 (1096)
.........++.. .|.+++|+|| +.++++ +.|+.|++||+.+++++..+..+ ...+..+.|+ |||++|
T Consensus 194 ---~~~~~~~~~~~~~-~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~---~~~v~~~~~s~~~~dg~~l 266 (325)
T d1pgua1 194 ---FSASDRTHHKQGS-FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD---QEPVQGGIFALSWLDSQKF 266 (325)
T ss_dssp ---EEEEECSSSCTTC-CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT---TBCCCSCEEEEEESSSSEE
T ss_pred ---cceecccccCCCC-ccEEeeeccccceeccccccccceeeeeecccccccccccc---ccccccceeeeeccCCCEE
Confidence 1123344555554 8999999997 578887 78999999999999998888765 6666666665 789999
Q ss_pred EEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEcc
Q 001343 991 FATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1059 (1096)
Q Consensus 991 a~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v 1059 (1096)
++++.|+.|+|||+.+++++..+.... |...+..+++.+.+ +.+|++|+.||.|++||+
T Consensus 267 ~s~s~D~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 267 ATVGADATIRVWDVTTSKCVQKWTLDK--------QQLGNQQVGVVATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCT--------TCGGGCEEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred EEEeCCCeEEEEECCCCCEEEEEEecC--------CcccCeEEEEEECC--CCEEEEEECCCEEEEEEC
Confidence 999999999999999999766544211 33344433344443 558999999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.6e-26 Score=246.38 Aligned_cols=268 Identities=19% Similarity=0.284 Sum_probs=218.3
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+|...|+|++| ||+ +||||+.||+|+|||+.+++.+.. +.+|.+.|.+++| ++++|
T Consensus 13 ~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l 68 (293)
T d1p22a2 13 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI 68 (293)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred CCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--cccee
Confidence 38889999765 787 799999999999999999988754 7889999999987 67899
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc---eEEEeeCCCCCe
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPV 497 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~---~~~~~~~~~~~v 497 (1096)
++|+.|+.|++|++..+..... ...+... ...+.+... .++++..++.+.+|| .... ....+..|...+
T Consensus 69 ~s~s~D~~i~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 141 (293)
T d1p22a2 69 ITGSSDSTVRVWDVNTGEMLNT---LIHHCEA--VLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 141 (293)
T ss_dssp EEEETTSCEEEEESSSCCEEEE---ECCCCSC--EEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred eccccccccccccccccccccc---ccccccc--ccccccccc--ceeecccccceeEeecccccccccccccccccccc
Confidence 9999999999999998765542 2223222 333445555 789999999999999 4443 345567788888
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
..+.+.+ ..+++++.|+.|++||.++.+....+..+...+..+.++ +..+++++. ++.|++||+++...+
T Consensus 142 ~~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~ 211 (293)
T d1p22a2 142 NVVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACL 211 (293)
T ss_dssp EEEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEE
T ss_pred ccceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecccceee
Confidence 8877643 578899999999999999999998898888888887775 568888886 999999999999999
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC---------CeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN---------VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
..+.++.. .+. .+.+++.+|++++.||.|++||+.. ...+..+..|.. .|.+++|+ +.+|++++
T Consensus 212 ~~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~--~V~~v~~d--~~~l~s~s 284 (293)
T d1p22a2 212 RVLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQFD--EFQIVSSS 284 (293)
T ss_dssp EEECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEEC--SSCEEECC
T ss_pred eeecccce-eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC--CEEEEEEc--CCEEEEEe
Confidence 99988876 554 4667889999999999999999743 345677776655 89999994 56899999
Q ss_pred CCCcEEEEE
Q 001343 649 ADNGFKILA 657 (1096)
Q Consensus 649 ~dg~i~iwd 657 (1096)
.||+|++||
T Consensus 285 ~Dg~i~iWD 293 (293)
T d1p22a2 285 HDDTILIWD 293 (293)
T ss_dssp SSSEEEEEC
T ss_pred cCCEEEEeC
Confidence 999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1e-26 Score=249.31 Aligned_cols=268 Identities=11% Similarity=0.140 Sum_probs=212.1
Q ss_pred cceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 335 ~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
.++++++. |..+|+|++|+| |+||+.||+|++||+.++ ..+|...|.+++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~ 53 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLD 53 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEE
T ss_pred cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEE
Confidence 35677777 999999999987 789999999999998754 245899999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC
Q 001343 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1096)
Q Consensus 414 ~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 492 (1096)
+++++ .+++++.|++|++|++...+ ....+.++.+.+++. .+++ +.++.+.+|+ .+++.+..+..
T Consensus 54 ~~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 119 (287)
T d1pgua2 54 NSKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVL-TNDDDLLILQSFTGDIIKSVRL 119 (287)
T ss_dssp CCSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEE-ETTSEEEEEETTTCCEEEEEEC
T ss_pred ecCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEE-eecccceeeeccceeeeeeccc
Confidence 99765 57889999999999976521 334577889998886 4554 5577788999 88888888764
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCC-eEEEEEcCCCCeeeEEe-CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDG-KIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
+ .++.++ ++ ++..+++++.++ .+++|++.......... .+...+.+++|+|++.+|++++. ++.|++||
T Consensus 120 ~-~~~~~~--~~--~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d 190 (287)
T d1pgua2 120 N-SPGSAV--SL--SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYD 190 (287)
T ss_dssp S-SCEEEE--EE--CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred c-ceeeee--ec--cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----ccccccee
Confidence 4 344444 44 345677777664 79999987655555443 35568999999999999999987 99999999
Q ss_pred CCCCeeeEE-EcCcCccceEEEEEeCC----------CCEEEEEEcCCeEEEEeCCC-CeEEEEeecCCCCCCccEEEEe
Q 001343 571 ESEGTIKRT-YAGFRKKSNGVVQFDTT----------QNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 571 ~~~~~~~~~-~~~~~~~~i~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
+.++..... +.+|.. .+.+++|+|. +.++++|+.|+.|++||++. ++.+..+..|.. .|++++|+
T Consensus 191 ~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~--~V~~v~~~ 267 (287)
T d1pgua2 191 LQSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD--GVNNLLWE 267 (287)
T ss_dssp TTTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT--CEEEEEEE
T ss_pred eccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC--CeEEEEEC
Confidence 999887654 456655 8999999874 46899999999999999976 556666666654 89999999
Q ss_pred CCCCEEEEEECCCcEEEEEc
Q 001343 639 KEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~ 658 (1096)
|++ .|++++.|+.|++|++
T Consensus 268 ~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 268 TPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETT-EEEEEETTSCEEEEEE
T ss_pred CCC-EEEEEECCCeEEEEEE
Confidence 986 6889999999999986
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=2e-26 Score=260.60 Aligned_cols=358 Identities=9% Similarity=0.023 Sum_probs=254.7
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
++++.+.||+|.|||..+++.+.. +..| ..+..++|||||++|++++.|+.|++||+.++
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~ 93 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred EEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence 468889999999999999998864 4444 46999999999999999999999999999887
Q ss_pred Ccc--ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE
Q 001343 439 NDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1096)
Q Consensus 439 ~~~--~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (1096)
+.. ..+....+|.+.+.+..|+|||+. ++++++.+++|++|| .+++++..+..|...+..+.+.+.
T Consensus 94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~---------- 162 (432)
T d1qksa2 94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE---------- 162 (432)
T ss_dssp SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC----------
T ss_pred CceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC----------
Confidence 643 222334567778888889999994 458899999999999 899999888877654444333332
Q ss_pred CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
.....+.++++|..++.... .++.|.+||..+++.........+.....+.|+|
T Consensus 163 -----------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp 216 (432)
T d1qksa2 163 -----------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216 (432)
T ss_dssp -----------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred -----------------------CceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcccCccccceECC
Confidence 12345678888888766543 2789999999887765544433344678899999
Q ss_pred CCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCC---CCCccEEEEeCCCCEEEEEE-CCCcEEEEEcCCCccccccccC
Q 001343 596 TQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG---LPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 596 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
+|+++++++ .++.+.++|..+++.+..+..... ........+...+...++.. .++.+.+|.....
T Consensus 217 dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~--------- 287 (432)
T d1qksa2 217 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE--------- 287 (432)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT---------
T ss_pred CCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc---------
Confidence 999888877 456899999999988877754321 11222233332333333322 1445555543211
Q ss_pred CCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCC
Q 001343 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (1096)
Q Consensus 671 ~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~ 750 (1096)
T Consensus 288 -------------------------------------------------------------------------------- 287 (432)
T d1qksa2 288 -------------------------------------------------------------------------------- 287 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCc
Q 001343 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830 (1096)
Q Consensus 751 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~ 830 (1096)
..++ +...+....++|++..+++++.++..++|.... +.. |
T Consensus 288 -----~~~~---~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~-----------------------------~~~--~ 328 (432)
T d1qksa2 288 -----GHPD---NAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT-----------------------------LNP--E 328 (432)
T ss_dssp -----TCTT---TBTSEEEEEECSCSCCCCEECCTTCSEEEEECT-----------------------------TCS--S
T ss_pred -----cccc---cccEEEEEEEcCCCCeEEEEecCCccceeeccc-----------------------------CCC--C
Confidence 0111 455677778888887788888887888886421 111 3
Q ss_pred CCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEee-----CCCeEEEEeecc
Q 001343 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-----EDSTIHIYNVRV 904 (1096)
Q Consensus 831 ~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~-----~dg~i~iw~~~~ 904 (1096)
......+++ ||++.+++++ |+.+++|++.++. .+..|...+.+++||| ||++++++. .+|.|+|||..+
T Consensus 329 ~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T 403 (432)
T d1qksa2 329 AEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKT 403 (432)
T ss_dssp HHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH---TCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred CCeeeEEEE-EechhhcccccCCceEeccccccc---ccCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCC
Confidence 333445565 9999999999 7889999986653 3446777899999999 898876553 478999999999
Q ss_pred ce
Q 001343 905 DE 906 (1096)
Q Consensus 905 ~~ 906 (1096)
.+
T Consensus 404 ~k 405 (432)
T d1qksa2 404 LE 405 (432)
T ss_dssp TE
T ss_pred ce
Confidence 87
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.6e-25 Score=251.63 Aligned_cols=281 Identities=9% Similarity=0.070 Sum_probs=203.3
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccc---cceeecccccCEEEEEEe---c-CC-CcEEEEEEe
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR---QHSQIDAHVGAVNDLAFA---Y-PN-KLLCVVTCG 472 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~l~~h~~~v~~l~~s---~-d~-~~~~l~s~s 472 (1096)
..++|.+.|.++++++ ++|++|+.|++|+|||..+.+... .......|...+..+... + ++ ...++++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 4678999999999874 699999999999999987654321 111223455544333321 1 11 112678999
Q ss_pred CCCcEEEEE-cCCceEEE-----e-----eCCCCCeEEEEeeecCC---CcEEEEEECCCeEEEEEcCCCCe--------
Q 001343 473 DDKLIKVWE-LSGRKLFN-----F-----EGHEAPVYSICPHHKEN---IQFIFSTAIDGKIKAWLYDTMGS-------- 530 (1096)
Q Consensus 473 ~d~~i~iwd-~~~~~~~~-----~-----~~~~~~v~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~-------- 530 (1096)
.||.|++|+ ..+..... . ..+...+..+++.+..+ +.++++++.||++++|++.....
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~ 166 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence 999999999 43322111 1 12445677787766432 57899999999999999853211
Q ss_pred ---ee-------EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc------CcCccceEEEEEe
Q 001343 531 ---RV-------DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA------GFRKKSNGVVQFD 594 (1096)
Q Consensus 531 ---~~-------~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~------~~~~~~i~~~~~~ 594 (1096)
.. ....+...+.+++|+|++ ++++++. |+.|++||+.+++.+..+. +|.. .|.+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~-~V~~l~~s 240 (393)
T d1sq9a_ 167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKFS 240 (393)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEEC
T ss_pred eccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccc-eEEEcccc
Confidence 00 112334468899999998 7888876 9999999999998877654 4555 89999999
Q ss_pred CCCCEEEEEEcCC---eEEEEeCCCCeEEEEeecC-----------CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 595 TTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAE-----------GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 595 ~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
|++++|++|+.|+ .|++||+.+++.+..+... +|...|++++|+|++++|++++.|++|++||+.+
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence 9999999999887 4999999999988877521 3445899999999999999999999999999999
Q ss_pred CccccccccCCCcccccCcceeEEeecCCCe
Q 001343 661 GLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1096)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 691 (1096)
+ +++..+.+|...+.. ....++|+++|..
T Consensus 321 g-~~~~~l~gH~~~v~~-~~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 321 K-ERITTLNMHCDDIEI-EEDILAVDEHGDS 349 (393)
T ss_dssp T-EEEEEEECCGGGCSS-GGGCCCBCTTSCB
T ss_pred C-CEEEEECCcCCcccC-CccEEEECCCCCE
Confidence 8 788888888765431 1223445544443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.2e-26 Score=252.97 Aligned_cols=291 Identities=11% Similarity=0.108 Sum_probs=212.5
Q ss_pred eEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 337 VAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 337 ~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
++..++ |.+.|++|+|+|+|+ +||+|+.||+|+|||+.++..... .....+|.++|.+++|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~----------------~~~~~~h~~~V~~v~f~ 65 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFI 65 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceE----------------EEEecCCCCCEEEEEEe
Confidence 445555 999999999999999 799999999999999987654321 01134699999999999
Q ss_pred CC-CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE----EE
Q 001343 416 PD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL----FN 489 (1096)
Q Consensus 416 pd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~----~~ 489 (1096)
|+ +.+|++|+.||.|++|++..+...... ...+........+.+++. .+++++.|+++++|| ..+... ..
T Consensus 66 ~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~~ 141 (342)
T d1yfqa_ 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQAL--TNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSSSSEEEC--BSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred CCCCCEEEEcccccceeeeecccccccccc--cccccccccccccccccc--cccccccccccceeeccccccceeeecc
Confidence 86 558999999999999999887655432 223344445556666777 899999999999999 443322 22
Q ss_pred eeCCCC--CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee---EEeCCCCcEEEEEEc-CCCCEEEEEeeccCCC
Q 001343 490 FEGHEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 490 ~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~l~~s-~~~~~l~~~~~~~~~~ 563 (1096)
...+.. ......+.+ ++..+++++.||.|++||+....... ........+.+..+. .++..+++++. +
T Consensus 142 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----d 215 (342)
T d1yfqa_ 142 LNSNNTKVKNKIFTMDT--NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----D 215 (342)
T ss_dssp SCSSSSSSCCCEEEEEE--CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----T
T ss_pred cccccccceeeeeeeec--cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC----C
Confidence 222222 233444444 45789999999999999998765443 223333455555554 46677888776 8
Q ss_pred CeEEEEeCCCCeee------EEE---------cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC
Q 001343 564 SFLVEWNESEGTIK------RTY---------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~------~~~---------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1096)
+.+.+|+....... ..+ .+|. ..+.+++|+|++++|++|+.||.|++||+.+++.+..+..+.
T Consensus 216 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~- 293 (342)
T d1yfqa_ 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA-YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN- 293 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC-CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-
T ss_pred CeEEEEEecCCcceeeccccceeeeeeeccCCCccc-ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-
Confidence 99999987643211 111 1222 267889999999999999999999999999999988775432
Q ss_pred CCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 629 LPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.+..++|+|+++++++++.|+.+++|..
T Consensus 294 --~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 294 --EDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp --SSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred --CCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 4567889999999999999988887754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.9e-25 Score=235.07 Aligned_cols=234 Identities=15% Similarity=0.254 Sum_probs=189.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
..+|...|+|++| ||++||+|+.||+|+|||++++++++ ++.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 5678899999764 79999999999999999999988776 68899999999987 566 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee---EEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
..+........+......... ....++++..++.+++|+........ .+..+...+..+.+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence 777777766655554444332 33589999999999999998765433 4455666777777654 4666776
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1096)
. ++.+++||..+++.+..+.++.. .+..+.++ +..+++++.||.|++||+.+...+.....+.. .+. .+
T Consensus 156 ~----d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~--~~ 224 (293)
T d1p22a2 156 G----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVR--CI 224 (293)
T ss_dssp T----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEE--EE
T ss_pred C----CCceeeecCCCCcEEEEEccccc-ccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce--eee--ec
Confidence 5 99999999999999999998876 66656554 57899999999999999999999988876654 443 56
Q ss_pred eCCCCEEEEEECCCcEEEEEcCCC
Q 001343 638 SKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 638 s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++++.+|++++.||.|++||+...
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHH
T ss_pred cccceEEEEEcCCCEEEEEECCCC
Confidence 778899999999999999998654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.4e-26 Score=246.34 Aligned_cols=278 Identities=13% Similarity=0.093 Sum_probs=217.5
Q ss_pred eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEE
Q 001343 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1096)
Q Consensus 445 ~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 523 (1096)
+++.||.++|++++|+| |+||+.||+|++|| .++ ..+|...|.++++.+ + ..+++++.|+++++|
T Consensus 7 ~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~--~-~~~~s~s~D~~v~~w 72 (287)
T d1pgua2 7 KTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSK--A-QEYSSISWDDTLKVN 72 (287)
T ss_dssp EEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCS--T-TCCEEEETTTEEEET
T ss_pred EEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecC--C-CeEEEEeeccccccc
Confidence 37899999999999975 79999999999999 433 368999999999864 3 468999999999999
Q ss_pred EcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE
Q 001343 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (1096)
Q Consensus 524 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 603 (1096)
++... .....+..+++++++..++++. +..+.+|+..+++.+..+..... ..++++++..++++
T Consensus 73 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~ 136 (287)
T d1pgua2 73 GITKH-------EFGSQPKVASANNDGFTAVLTN-----DDDLLILQSFTGDIIKSVRLNSP----GSAVSLSQNYVAVG 136 (287)
T ss_dssp TEEEE-------ECSSCEEEEEECSSSEEEEEET-----TSEEEEEETTTCCEEEEEECSSC----EEEEEECSSEEEEE
T ss_pred ccccc-------ccccceeeeeeccCCceEEEee-----cccceeeeccceeeeeeccccce----eeeeeccCcceeee
Confidence 87532 1234577889999988887765 77899999999998888776432 24567788888888
Q ss_pred EcCC-eEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCccee
Q 001343 604 GEDS-QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIES 682 (1096)
Q Consensus 604 ~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 682 (1096)
+.++ .+++|++...+....+... +...+.+++|+|++.+|++++.||.|++||+.++......+..| ..+|.+
T Consensus 137 ~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h-----~~~v~~ 210 (287)
T d1pgua2 137 LEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR-----TSKINA 210 (287)
T ss_dssp ETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC-----SSCEEE
T ss_pred ccccceeeeeeccccceeeeeeec-cCCceeEEEeccCccccccccccccccceeeccccccccccccc-----ccccce
Confidence 8765 7999999876665555432 23479999999999999999999999999998874444444444 446888
Q ss_pred EEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCC
Q 001343 683 VALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762 (1096)
Q Consensus 683 ~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 762 (1096)
++|+|.+.... ....++.++++++.|++|++|++.. +.... ..+.+
T Consensus 211 ~~~~p~~~~~~---------------------------~~~~~~~~l~sgs~D~~i~iw~~~~---~~~~~-~~~~~--- 256 (287)
T d1pgua2 211 ISWKPAEKGAN---------------------------EEEIEEDLVATGSLDTNIFIYSVKR---PMKII-KALNA--- 256 (287)
T ss_dssp EEECCCC---------------------------------CCSCCEEEEEETTSCEEEEESSC---TTCCE-EETTS---
T ss_pred eeecccccccc---------------------------cccCCCCeeEeecCCCeEEEEECCC---CCeEE-EEeCC---
Confidence 99999887641 2345778899999999999999863 23333 35566
Q ss_pred CcccEEEEEEecCCceEEEeecCCeEEEeec
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~ 793 (1096)
|...|++++|+|++. +++++.|+.|++|++
T Consensus 257 h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 257 HKDGVNNLLWETPST-LVSSGADACIKRWNV 286 (287)
T ss_dssp STTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred CCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence 999999999999875 899999999999985
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.8e-25 Score=248.57 Aligned_cols=284 Identities=12% Similarity=0.133 Sum_probs=207.6
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE------c
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW------S 415 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------s 415 (1096)
+|.+.|+++++++ + +++||+.|++|+|||..+.+........ .....|...+..+.. +
T Consensus 12 ~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 75 (393)
T d1sq9a_ 12 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKS-------------YSHFVHKSGLHHVDVLQAIERD 75 (393)
T ss_dssp CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGE-------------EEEECCTTCEEEEEEEEEEETT
T ss_pred cccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCccccee-------------EeeeeccCCceEeeeEeeeccC
Confidence 4999999999875 4 6999999999999998766532110000 001224444333322 2
Q ss_pred C-CCCEEEEEECCCeEEEEEccCCCccccce-------eecccccCEEEEEEecCCC---cEEEEEEeCCCcEEEEE-cC
Q 001343 416 P-DGNYVGVAFTKHLIQLYSYAGSNDLRQHS-------QIDAHVGAVNDLAFAYPNK---LLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 416 p-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~l~~h~~~v~~l~~s~d~~---~~~l~s~s~d~~i~iwd-~~ 483 (1096)
. ++.++++++.||.|++|++.......... ....+...+..++|.+++. ..++++++.||++++|+ ..
T Consensus 76 ~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 76 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeec
Confidence 2 34578899999999999987654432211 1124566788899987642 12789999999999999 32
Q ss_pred C-c-----------------eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE------eCCCC
Q 001343 484 G-R-----------------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY------DAPGH 539 (1096)
Q Consensus 484 ~-~-----------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~ 539 (1096)
. . .......+...+.+++|+| ++ +|++|+.||+|++||+.+++....+ ..|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~ 232 (393)
T d1sq9a_ 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232 (393)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred CCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence 1 1 0111234556688999976 44 8999999999999999988776544 45677
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc-------------CcCccceEEEEEeCCCCEEEEEEcC
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-------------GFRKKSNGVVQFDTTQNHFLAVGED 606 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1096)
.|.+++|+|+|++|++++.+.. .+.|++||+.+++.+..+. +|.. .|.+++|+|++++|++++.|
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~t-~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-~V~~l~fspd~~~l~S~s~D 310 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSNS-FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLCSAGWD 310 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEETT-EEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSSSEEEEEETT
T ss_pred eEEEcccccccceeeeecCCCC-cceeeecccccceeeeeeccccccccceeeeecccC-ceeeeccCCCCCeeEEECCC
Confidence 9999999999999999986211 2469999999999888775 6766 89999999999999999999
Q ss_pred CeEEEEeCCCCeEEEEeecCCCCCCcc----EEEEeCCCCEEEEEE
Q 001343 607 SQIKFWDMDNVNILTSTDAEGGLPNLP----RLRFSKEGNLLAVTT 648 (1096)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~----~~~~s~~~~~l~~~~ 648 (1096)
++|++||+.+++++.++.+|.. .|. .++|+|++..+++++
T Consensus 311 ~~v~vWd~~~g~~~~~l~gH~~--~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 311 GKLRFWDVKTKERITTLNMHCD--DIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCGG--GCSSGGGCCCBCTTSCBCSSCC
T ss_pred CEEEEEECCCCCEEEEECCcCC--cccCCccEEEECCCCCEEEEcc
Confidence 9999999999999999988754 343 477888887765443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=8.5e-26 Score=248.22 Aligned_cols=280 Identities=11% Similarity=0.002 Sum_probs=203.4
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
+.++|++.|++|+|+|++++||+|+.||+|+|||++++..........+|.++|.+++|+|++.. +|++|+.|++|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence 47889999999999999999999999999999999887665544445579999999999998654 79999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe----CC--CCcEEEEEEcCCCCEE
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----AP--GHWCTTMLYSADGSRL 553 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~--~~~i~~l~~s~~~~~l 553 (1096)
+ ..+........+........+.+. +...+++++.++++++||++......... .+ ......+.+.+.+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred eccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 9 666666666555554443333322 44789999999999999987544333221 11 2244566777888899
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEE---EcCcCccceEEEE-EeCCCCEEEEEEcCCeEEEEeCCCCeE---------E
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRT---YAGFRKKSNGVVQ-FDTTQNHFLAVGEDSQIKFWDMDNVNI---------L 620 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~---~~~~~~~~i~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~---------~ 620 (1096)
++++. ++.|++||+........ ...... ...+.. +..++..+++++.||.+.+|+...... .
T Consensus 164 ~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~ 238 (342)
T d1yfqa_ 164 IVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp EEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred eeecC----CCcEEEEecccCcccceeeeeccccc-ceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence 99887 99999999986654322 222222 334444 445678899999999999999865321 1
Q ss_pred EEe----ecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEe
Q 001343 621 TST----DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1096)
Q Consensus 621 ~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~ 694 (1096)
... ....+...|++++|+|++++|++|+.||.|++||+.++ +.+..+..+. ....++|+|+|+.+++
T Consensus 239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~-~~l~~~~~~~------~~~~~~~s~~~~~l~~ 309 (342)
T d1yfqa_ 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-KKIKNFAKFN------EDSVVKIACSDNILCL 309 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCCS------SSEEEEEEECSSEEEE
T ss_pred eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC-cEEEEecCCC------CCEEEEEEeCCCEEEE
Confidence 111 11223346889999999999999999999999999888 4455444321 2345678777777633
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=4.3e-25 Score=250.77 Aligned_cols=371 Identities=8% Similarity=-0.005 Sum_probs=243.5
Q ss_pred EcCCCCcE-EEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeE
Q 001343 352 FHPSHQTL-LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1096)
Q Consensus 352 fsp~g~~l-lasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i 430 (1096)
++.|.+.+ +++++.||+|+|||+.+++.+.+ +..| ..+..++|||||++|++++.|++|
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~v 85 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDARI 85 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCCCE
Confidence 55554434 57788899999999999998864 4445 469999999999999999999999
Q ss_pred EEEEccCCCccc--cceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCC
Q 001343 431 QLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKEN 507 (1096)
Q Consensus 431 ~vwd~~~~~~~~--~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~ 507 (1096)
++||+.+++... .+....+|.+.+.+++|+|||+. +++++..++.+++|| ..+.++..+.+|...+..+.+.+.+.
T Consensus 86 ~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (426)
T d1hzua2 86 DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 164 (426)
T ss_dssp EEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred EEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCc
Confidence 999999987543 22234467888888999999994 456677899999999 88899888888877776666654332
Q ss_pred CcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE-EcCcCcc
Q 001343 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAGFRKK 586 (1096)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~ 586 (1096)
...++.+.|+...++. .. +.+.+.+++...+..... ...+. .
T Consensus 165 -~~~i~~s~d~~~~~~~--------------------------------~~---~~~~i~~~~~~~~~~~~~~~~~~~-~ 207 (426)
T d1hzua2 165 -VAAIIASHEHPEFIVN--------------------------------VK---ETGKVLLVNYKDIDNLTVTSIGAA-P 207 (426)
T ss_dssp -EEEEEECSSSSEEEEE--------------------------------ET---TTTEEEEEECSSSSSCEEEEEECC-S
T ss_pred -eeEEEECCCCCEEEEe--------------------------------cC---CCCeEEEEEeccccceeeEEeccC-C
Confidence 2333444444443332 21 134444454444332221 12222 2
Q ss_pred ceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCE-EE--EEECCCcEEEEEcCCCc
Q 001343 587 SNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL-LA--VTTADNGFKILANAIGL 662 (1096)
Q Consensus 587 ~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~--~~~~dg~i~iwd~~~~~ 662 (1096)
.+..+.++|++++++++. .+..+.+++..+++.+................+...+.. +. ..+.|+.+.+|+....
T Consensus 208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~- 286 (426)
T d1hzua2 208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK- 286 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT-
T ss_pred ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc-
Confidence 677799999999888876 566799999999999888876554434445555443322 21 2224566666654322
Q ss_pred cccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCcccee
Q 001343 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1096)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~ 742 (1096)
.+.+|+
T Consensus 287 --------------------------------------------------------------------------~~~~~~ 292 (426)
T d1hzua2 287 --------------------------------------------------------------------------NHPQYA 292 (426)
T ss_dssp --------------------------------------------------------------------------TCTTTB
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 111111
Q ss_pred eeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEE-------eecCCeEEEeeccCCccCCCCceeeecCcccccc
Q 001343 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLA-------LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (1096)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~-------~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~ 815 (1096)
. + ....+.+ |...+..++|+||++++++ +..+++|++|++...... . .++..
T Consensus 293 ~-------~-~~~~l~g---~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~--~--------~~~~~ 351 (426)
T d1hzua2 293 W-------K-KVAELQG---QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK--Y--------QVLPI 351 (426)
T ss_dssp T-------S-EEEEEEC---SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSC--C--------EEECH
T ss_pred c-------e-EeEEEec---CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcC--e--------EEecc
Confidence 1 1 1124455 8888999999999998885 334678888887442210 0 00000
Q ss_pred CccccccccccCCCcCCCeeeeeecCCCcEEEE-e----c-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEE
Q 001343 816 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS-A----T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889 (1096)
Q Consensus 816 ~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~-~----~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~ 889 (1096)
+.. ..+.. +...|..++|||||++++. + + +|.|+|||.++++....+.++. .++| +|++-+
T Consensus 352 --~~~--~~~~~--~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp-~Gk~~~ 418 (426)
T d1hzua2 352 --AEW--ADLGE--GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITP-TGKFNV 418 (426)
T ss_dssp --HHH--HCCCS--SCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSE-EEEEEH
T ss_pred --chh--cccCC--CCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCC-CceEeE
Confidence 000 01222 5667889999999987643 2 2 4789999999999999998775 4457 676543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=8.4e-26 Score=250.91 Aligned_cols=195 Identities=13% Similarity=0.053 Sum_probs=161.8
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC--CcEEEEEcCCceE
Q 001343 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWELSGRKL 487 (1096)
Q Consensus 411 ~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d--~~i~iwd~~~~~~ 487 (1096)
.-.||| ||+++|+++. |.|++||++++...+ + +|...|.+++|+|||+ .|++++.+ ..|++||..+..+
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKA 78 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCE
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCCcEEE----c-cCCCCEEEEEECCCCC--EEEEEEcCCCCEEEEEECCCCcE
Confidence 357999 9999999875 799999998876543 3 6999999999999999 66665544 3799999555666
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc------C
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK------D 561 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~------~ 561 (1096)
..+..|...|.+++|+| ++++|++++.++.+++|++.+......+..+...+.+++|+|+|++|+.+.... .
T Consensus 79 ~~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~ 156 (360)
T d1k32a3 79 EKFEENLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 156 (360)
T ss_dssp EECCCCCCSEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred EEeeCCCceEEeeeecc--cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence 77888999999999977 778999999999999999999999888888888999999999999998765421 2
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
.++.+++||..+++....... .. .+..+.|+|+|+.|++++.++.+.+|+....
T Consensus 157 ~~~~~~v~d~~~~~~~~~~~~-~~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 157 VMQAIHVYDMEGRKIFAATTE-NS-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp CEEEEEEEETTTTEEEECSCS-SS-BEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred cccceeeeccccCceeeeccc-cc-ccccccccCCCCEEEEEeCCCceEccccccc
Confidence 355799999998876654443 33 5677899999999999999999999997654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=2e-24 Score=244.08 Aligned_cols=363 Identities=9% Similarity=-0.043 Sum_probs=257.1
Q ss_pred cEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE--Ee---CCC
Q 001343 465 LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YD---APG 538 (1096)
Q Consensus 465 ~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~---~~~ 538 (1096)
.+++++.+.||+|.+|| .+++++..+..+. .+..++|+| ||+++++++.||++++||+.+.+.... +. .+.
T Consensus 32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSp--DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~ 108 (432)
T d1qksa2 32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 108 (432)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred cEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECC--CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence 33679999999999999 9999999998774 589999977 789999999999999999988765432 22 223
Q ss_pred CcEEEEEEcCCCCEEE-EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 539 HWCTTMLYSADGSRLF-SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 539 ~~i~~l~~s~~~~~l~-~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
+.+.+..|+|||++|+ ++.. ++.+.+||..+++.+..+..+.. .+....+.+++.
T Consensus 109 ~~~~s~~~SpDG~~l~vs~~~----~~~v~i~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~------------------- 164 (432)
T d1qksa2 109 SIETSKMEGWEDKYAIAGAYW----PPQYVIMDGETLEPKKIQSTRGM-TYDEQEYHPEPR------------------- 164 (432)
T ss_dssp EEEECCSTTCTTTEEEEEEEE----TTEEEEEETTTCCEEEEEECCEE-CTTTCCEESCCC-------------------
T ss_pred CeEEecccCCCCCEEEEEcCC----CCeEEEEeCccccceeeeccCCc-cccceeccCCCc-------------------
Confidence 3455667788999875 4554 89999999999999998877654 222233434332
Q ss_pred eEEEEeecCCCCCCccEEEEeCCCCEEE-EEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecC
Q 001343 618 NILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 618 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
...+.++|++..++ +...++.|.+|+..+..
T Consensus 165 --------------~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~---------------------------------- 196 (432)
T d1qksa2 165 --------------VAAILASHYRPEFIVNVKETGKILLVDYTDLN---------------------------------- 196 (432)
T ss_dssp --------------EEEEEECSSSSEEEEEETTTTEEEEEETTCSS----------------------------------
T ss_pred --------------eeEEEECCCCCEEEEEEccCCeEEEEEccCCC----------------------------------
Confidence 33467888887654 45557888888875441
Q ss_pred CCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCC
Q 001343 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (1096)
Q Consensus 697 s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 776 (1096)
..+++.+. +...+..++|+|+|
T Consensus 197 ----------------------------------------~~~~~~i~------------------~g~~~~~~~~spdg 218 (432)
T d1qksa2 197 ----------------------------------------NLKTTEIS------------------AERFLHDGGLDGSH 218 (432)
T ss_dssp ----------------------------------------EEEEEEEE------------------CCSSEEEEEECTTS
T ss_pred ----------------------------------------cceEEEEc------------------ccCccccceECCCC
Confidence 11222222 44567788999999
Q ss_pred ceEEEeec-CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCe
Q 001343 777 VGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGK 853 (1096)
Q Consensus 777 ~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~ 853 (1096)
+++++++. ++.+.+++..... . ++...++.... |........+...+...++.. ++.
T Consensus 219 ~~~~va~~~~~~v~v~d~~~~~------~-------~~~~~~g~~~~-------~~~~~~~~~~~~~g~~~~~~~lg~~~ 278 (432)
T d1qksa2 219 RYFITAANARNKLVVIDTKEGK------L-------VAIEDTGGQTP-------HPGRGANFVHPTFGPVWATSHMGDDS 278 (432)
T ss_dssp CEEEEEEGGGTEEEEEETTTTE------E-------EEEEECSSSSB-------CCTTCEEEEETTTEEEEEEEBSSSSE
T ss_pred CEEEEeccccceEEEeecccce------E-------EEEeccCcccc-------ccCcccceecCCCCceecccccCCce
Confidence 98877776 4677777754311 1 11122222111 333444555666666666665 578
Q ss_pred EEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCC
Q 001343 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTG 933 (1096)
Q Consensus 854 v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 933 (1096)
|.+|+.... ....|...+....++| ++..+++++.+++.++|...+.. .+.. .
T Consensus 279 v~~~~~~~~----~~~~~~~~v~~~~~~~-~g~~~~~~s~p~~~~lw~~~~~~---------------------~~~~-~ 331 (432)
T d1qksa2 279 VALIGTDPE----GHPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLN---------------------PEAE-I 331 (432)
T ss_dssp EEEEECCTT----TCTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTC---------------------SSHH-H
T ss_pred EEecccccc----cccccccEEEEEEEcC-CCCeEEEEecCCccceeecccCC---------------------CCCC-e
Confidence 999987553 2356777899999999 89999999999999999765433 1221 2
Q ss_pred CceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEe-----cCCcEEEEecCCC
Q 001343 934 DTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-----CDGNIGVFDADTL 1007 (1096)
Q Consensus 934 v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-----~dg~i~vwd~~~~ 1007 (1096)
...+++ ||++.|++ +.|+.+++|++.++..+ ..+ ...+.+++|||||++++++. .+|.|+|||..++
T Consensus 332 ~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~---~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~ 404 (432)
T d1qksa2 332 SGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEG---QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 404 (432)
T ss_dssp HTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSS---CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred eeEEEE-EechhhcccccCCceEeccccccccc---CCC---CCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCc
Confidence 345555 99999999 78999999999776432 222 66789999999999886554 4688999999999
Q ss_pred ceeEEEc
Q 001343 1008 RLRCYIA 1014 (1096)
Q Consensus 1008 ~~~~~~~ 1014 (1096)
++...+.
T Consensus 405 k~~~~i~ 411 (432)
T d1qksa2 405 ELKHVIK 411 (432)
T ss_dssp EEEEEEC
T ss_pred eEEeEec
Confidence 9877665
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=4.9e-26 Score=252.86 Aligned_cols=192 Identities=16% Similarity=0.148 Sum_probs=159.2
Q ss_pred EEEEEcC-CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC
Q 001343 348 ISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1096)
Q Consensus 348 ~~v~fsp-~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~ 426 (1096)
..-.||| ||+ ++|+++ +|.|.|||+.++..+. .+|...|.+++|||||++|++++.
T Consensus 6 ~~~~fSP~dG~-~~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~ 62 (360)
T d1k32a3 6 FAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGT 62 (360)
T ss_dssp GEEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEE
T ss_pred hcccccCCCCC-EEEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEc
Confidence 4567999 999 577764 6899999998876542 258999999999999999998776
Q ss_pred CC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEee
Q 001343 427 KH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 427 dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~ 503 (1096)
+. .|++||.++++..+ +..|.+.|.+++|+||++ +|++++.++.+++|+ ..++....+..|...+.+++|+
T Consensus 63 ~~g~~v~v~d~~~~~~~~----~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 136 (360)
T d1k32a3 63 REGDFLGIYDYRTGKAEK----FEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 136 (360)
T ss_dssp TTEEEEEEEETTTCCEEE----CCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred CCCCEEEEEECCCCcEEE----eeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence 53 79999999876543 678999999999999999 899999999999999 8888888999999999999997
Q ss_pred ecCCCcEEEEEE----------CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 504 HKENIQFIFSTA----------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 504 ~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
| +|++|+.++ .++.+++|++.+++.. ....+...+..++|+|+|++|++++. ++.+.+|+...
T Consensus 137 p--dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~ 209 (360)
T d1k32a3 137 D--NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVV 209 (360)
T ss_dssp T--TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSS
T ss_pred c--ceeeeeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCCCCEEEEEeC----CCceEcccccc
Confidence 7 667887553 4557999999876543 44456667899999999999999886 88889998765
Q ss_pred Ce
Q 001343 574 GT 575 (1096)
Q Consensus 574 ~~ 575 (1096)
..
T Consensus 210 ~~ 211 (360)
T d1k32a3 210 LN 211 (360)
T ss_dssp SC
T ss_pred cc
Confidence 43
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=3.4e-23 Score=234.92 Aligned_cols=356 Identities=10% Similarity=0.020 Sum_probs=233.4
Q ss_pred CCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE--Ec---
Q 001343 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--YA--- 581 (1096)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~--- 581 (1096)
...++++.+.||+|++||+.+++.+..+..+. .+..++|||||+++++++. ++.+++||+.+++.... +.
T Consensus 31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~----d~~v~vwd~~t~~~~~~~~i~~~~ 105 (426)
T d1hzua2 31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIKIGI 105 (426)
T ss_dssp GGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEECCS
T ss_pred CeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeC----CCCEEEEEccCCceeEEEEEeCCC
Confidence 33456788899999999999999998888764 5899999999999999886 88999999998875443 32
Q ss_pred CcCccceEEEEEeCCCCEEEEE-EcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCE-EEEEECCCcEEEEEcC
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL-LAVTTADNGFKILANA 659 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~ 659 (1096)
+|.. .+.++.|+|||++++++ ..++.+.+||..++..+.....+.. .+..+.+.+++.. .++.+.|+...++...
T Consensus 106 ~~~~-~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~ 182 (426)
T d1hzua2 106 EARS-VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYHPEPRVAAIIASHEHPEFIVNVK 182 (426)
T ss_dssp EEEE-EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCcc-eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--CccceeecCCCceeEEEECCCCCEEEEecC
Confidence 2222 44556778899987655 5889999999999999988887765 6677778887754 4555667666665543
Q ss_pred CCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCcc
Q 001343 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPK 739 (1096)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~ 739 (1096)
... .+.
T Consensus 183 ~~~--------------------------------------------------------------------------~i~ 188 (426)
T d1hzua2 183 ETG--------------------------------------------------------------------------KVL 188 (426)
T ss_dssp TTT--------------------------------------------------------------------------EEE
T ss_pred CCC--------------------------------------------------------------------------eEE
Confidence 220 000
Q ss_pred ceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCccccccCcc
Q 001343 740 PWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1096)
Q Consensus 740 iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~ 818 (1096)
+++.. ..........+ +...+..+.|+|++++++++.. +..+.+++..... ..+.. .
T Consensus 189 ~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~------~~~~~-----~---- 246 (426)
T d1hzua2 189 LVNYK----DIDNLTVTSIG---AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR------LSALV-----D---- 246 (426)
T ss_dssp EEECS----SSSSCEEEEEE---CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE------EEEEE-----E----
T ss_pred EEEec----cccceeeEEec---cCCccEeeeECCCCcEEEeeeecccceeeeeccccc------EEEEe-----c----
Confidence 11100 00000001111 6678899999999998887776 5667777754321 11111 0
Q ss_pred ccccccccCCCcCCCeeeeeecCCC--cEEEEe-c-CCeEEEEEcc-------cceEEEeecCCCCCeeEEEEecCCCcE
Q 001343 819 LLMANDVAGVNLEEAVPCIALSKND--SYVMSA-T-GGKISLFNMM-------TFKVMTTFMSPPPASTFLAFHPQDNNI 887 (1096)
Q Consensus 819 ~~~~~~~~g~~~~~~v~~l~~s~dg--~~la~~-~-dg~v~iwd~~-------~~~~~~~~~~h~~~i~~l~~s~~d~~~ 887 (1096)
... +........+..++ ...+.. . ++.+.+|+.. .++...++.+|...+..++|+| |+++
T Consensus 247 ------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~ 317 (426)
T d1hzua2 247 ------VGK--TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSH 317 (426)
T ss_dssp ------CSS--CCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSE
T ss_pred ------cCC--cccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCC-CCce
Confidence 000 11112222222222 122211 1 4556666543 3578889999999999999999 8999
Q ss_pred EEE-------eeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-E-----ecceE
Q 001343 888 IAI-------GTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V-----HETQL 954 (1096)
Q Consensus 888 l~s-------~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~-----~d~~i 954 (1096)
|++ +..|++|+|||+.+++ +...+- .......+..+.. .+.+++|||||+++++ + .++.|
T Consensus 318 l~v~~~~~~s~~~~~tv~vwd~~t~~-~~~~~~-----~~~~~~~~~~~~~-rv~~~~fSpDGk~i~vs~~~~~~~~~~i 390 (426)
T d1hzua2 318 LYVDTTFNPDARISQSVAVFDLKNLD-AKYQVL-----PIAEWADLGEGAK-RVVQPEYNKRGDEVWFSVWNGKNDSSAL 390 (426)
T ss_dssp EEECCTTCSSHHHHTCEEEEETTCTT-SCCEEE-----CHHHHHCCCSSCC-CEEEEEECSSSSEEEEEECCCTTSCCEE
T ss_pred EEEeecCCCCcccCCEEEEEECCCCC-cCeEEe-----ccchhcccCCCCc-cEEEEEECCCCCEEEEEEecCCCCCCeE
Confidence 994 5668999999999876 110000 0000112223332 7889999999997755 2 47889
Q ss_pred EEEEcccceeccccccCCCCCCCceEEEEeeCCcEEE
Q 001343 955 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 991 (1096)
Q Consensus 955 ~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 991 (1096)
+|||.++++....+... . .++|+|+|-+
T Consensus 391 ~v~D~~T~k~~~~i~~~---~------~~tp~Gk~~~ 418 (426)
T d1hzua2 391 VVVDDKTLKLKAVVKDP---R------LITPTGKFNV 418 (426)
T ss_dssp EEEETTTTEEEEEECCT---T------CCSEEEEEEH
T ss_pred EEEECCCCeEEEEECCC---C------ccCCCceEeE
Confidence 99999999987777643 1 3468888854
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=3.4e-20 Score=199.17 Aligned_cols=273 Identities=10% Similarity=0.054 Sum_probs=214.3
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE-EEECCCeEEEEEcc
Q 001343 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-VAFTKHLIQLYSYA 436 (1096)
Q Consensus 358 ~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~-s~~~dg~i~vwd~~ 436 (1096)
|++++++.|++|.|||+.+++.+.+ +. ....+..++|+|||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~-------------------i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEE-------------------EE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 4566788999999999999987754 11 234578999999999885 55678999999999
Q ss_pred CCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEE-EEE
Q 001343 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FST 514 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~ 514 (1096)
+++.+. .+..|. .+..++|++++.. .++++..++.+.+|+ .+++....+..+ ....++++++ ++..+ +++
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--dg~~~~~~~ 134 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeec--CCCeeeeee
Confidence 987766 455554 5789999999985 566777888999999 777777777754 4567788866 44554 566
Q ss_pred ECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEe
Q 001343 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (1096)
Q Consensus 515 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 594 (1096)
..++.+.+|+..+......+..+. .+..+++++++..++++.. ....+.+|+....+....+..+. ....++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 208 (301)
T d1l0qa2 135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred ccccceeeeeccccceeeecccCC-CceEEEeeccccceeeecc---cccccccccccceeeeecccccC--Ccceeecc
Confidence 678899999999887777665544 5788999999999988765 26778889988888877776654 45668999
Q ss_pred CCCCEEEEEE---cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEE-EEEECCCcEEEEEcCCCccccccc
Q 001343 595 TTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAV 668 (1096)
Q Consensus 595 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 668 (1096)
+++..+++++ .++.|++||..+++.+..+.... .+.+++|+|||++| ++++.|+.|++||+.++ +.+..+
T Consensus 209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~ 282 (301)
T d1l0qa2 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATM 282 (301)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred ccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC-eEEEEE
Confidence 9999887765 34689999999999988887643 57899999999977 56677899999999988 444444
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.85 E-value=1e-18 Score=187.49 Aligned_cols=265 Identities=12% Similarity=0.085 Sum_probs=205.3
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
+|+.+ .++++.++.....+..++|+|||++++++++.++.|.+||+.+++.+.. +..|
T Consensus 16 v~D~~--t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~- 73 (301)
T d1l0qa2 16 VIDVT--SNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAG- 73 (301)
T ss_dssp EEETT--TTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECS-
T ss_pred EEECC--CCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-------------------eecc-
Confidence 67665 4578888887788999999999997667888899999999999987753 3333
Q ss_pred CCEEEEEEcCCCCEEEEE-ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 407 ISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
..+..++|++++.+++++ ..++.+.+|+..+++.... + .+...+.++.|+|++.. +++++..++.+.+|+ .++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~ 148 (301)
T d1l0qa2 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT---V-KTGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTK 148 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE---E-ECSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTT
T ss_pred ccccccccccccccccccccccceeeecccccceeeee---c-cccccceEEEeecCCCe-eeeeeccccceeeeecccc
Confidence 357899999999977655 4567899999998876552 3 35567889999999995 556777889999999 888
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC-CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
..+..+..+ ..+..+.+++ ++..+++++.+ +.+.+|+........... ....+..++++++++.++++..+ ...
T Consensus 149 ~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~-~~~ 223 (301)
T d1l0qa2 149 AVINTVSVG-RSPKGIAVTP--DGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVD-KYF 223 (301)
T ss_dssp EEEEEEECC-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEEC-SSC
T ss_pred ceeeecccC-CCceEEEeec--cccceeeecccccccccccccceeeeeccc-ccCCcceeecccccccccccccc-cee
Confidence 888777754 4577788866 55666666655 667777766554444443 34567889999999998876542 235
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEE-EEEcCCeEEEEeCCCCeEEEEeec
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
+.|++||..+++.+..+..+. .+..++|+|+|++++ +++.++.|++||+.+++.+.++..
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~--~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eeeeeeecCCCeEEEEEcCCC--CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 789999999999998887654 467899999999874 666799999999999999988864
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=1.4e-20 Score=206.70 Aligned_cols=328 Identities=9% Similarity=-0.020 Sum_probs=214.2
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEE-EECCCcEEEEEcCCCcccccccc
Q 001343 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV-TTADNGFKILANAIGLRSLRAVE 669 (1096)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~ 669 (1096)
++++++++++++++.+++|.+||+.+++.+.++..... ..+.+++|+|||+++++ +..++.|.+||+.++ +....+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeec
Confidence 46789999999999999999999999999998875432 25789999999998755 457899999999887 3322222
Q ss_pred CCC-cccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeec
Q 001343 670 NPP-FEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVD 748 (1096)
Q Consensus 670 ~~~-~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~ 748 (1096)
... ...
T Consensus 80 ~~~~~~~------------------------------------------------------------------------- 86 (346)
T d1jmxb_ 80 LSSVPGE------------------------------------------------------------------------- 86 (346)
T ss_dssp SCCSTTE-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 111 000
Q ss_pred CCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCC
Q 001343 749 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 828 (1096)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~ 828 (1096)
+...+..++|+|||+++++++.+.....|..... ...+.+|+..+++.... +...
T Consensus 87 --------------~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~-~~~~ 141 (346)
T d1jmxb_ 87 --------------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK----------PPRLEVFSTADGLEAKP-VRTF 141 (346)
T ss_dssp --------------EEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC----------CCEEEEEEGGGGGGBCC-SEEE
T ss_pred --------------cCCceEEEEEecCCCEEEEEecCCcceeeeeccC----------cceEEEEecccceeeeE-EEee
Confidence 0111223555566555554443322211111000 01233344444443321 1110
Q ss_pred CcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEE-EEeeCCCeEEEEeecccee
Q 001343 829 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII-AIGTEDSTIHIYNVRVDEL 907 (1096)
Q Consensus 829 ~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l-~s~~~dg~i~iw~~~~~~~ 907 (1096)
.....+..+.+++++++++++ +.+.+|++.+++.+..+..+. ....+.++| ++..+ +.+..++.+.+++.....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 216 (346)
T d1jmxb_ 142 PMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRN-WNRKGYSAP-DVLYFWPHQSPRHEFSMLYTIARF- 216 (346)
T ss_dssp ECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTT-CCCTTBCCC-BCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred eccCceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEecCC-CccceEEec-cccEEEEEecCCCceEeeeeeeee-
Confidence 123456677888888877654 568999999999998886554 456677888 56554 444555666666543221
Q ss_pred eeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeC
Q 001343 908 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 986 (1096)
Q Consensus 908 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~d 986 (1096)
.+....+++ ..+..+.+||+.++.........+ ...+..+.++++
T Consensus 217 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 262 (346)
T d1jmxb_ 217 --------------------------------KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL--TELYFTGLRSPK 262 (346)
T ss_dssp ---------------------------------------CCCEEEEEEEEEETTTCCEEEEEEEEC--SSCEEEEEECSS
T ss_pred --------------------------------ccCceeEeeccCCceEEEEECCCCceEEEEeecc--cceeEEEEEeCC
Confidence 122233344 457789999999888766554443 778889999999
Q ss_pred CcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCCCcc
Q 001343 987 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKW 1066 (1096)
Q Consensus 987 g~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~~~~ 1066 (1096)
+.+++.... +.|.+||..+++....+. +...++ +++|+| ||++|++++.||.|++||+.+++...
T Consensus 263 ~~~~~~~~~-~~v~v~d~~~~~~~~~~~-----------~~~~~~--~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 263 DPNQIYGVL-NRLAKYDLKQRKLIKAAN-----------LDHTYY--CVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVK 327 (346)
T ss_dssp CTTEEEEEE-SEEEEEETTTTEEEEEEE-----------CSSCCC--EEEECS-SSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred CCEEEEecC-CeEEEEECCCCcEEEEEc-----------CCCCEE--EEEEcC-CCCEEEEEeCCCcEEEEECccCCEEE
Confidence 999887664 579999999998776655 233566 699999 99999999999999999999988544
Q ss_pred ccCCCC
Q 001343 1067 GVSPPV 1072 (1096)
Q Consensus 1067 ~~~~~~ 1072 (1096)
..+.|.
T Consensus 328 ~i~~p~ 333 (346)
T d1jmxb_ 328 NIKLPG 333 (346)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 444443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=2.3e-20 Score=204.27 Aligned_cols=309 Identities=9% Similarity=0.003 Sum_probs=211.5
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE-EEECCCcEEEEEcCCCccccccccCCCcccc
Q 001343 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (1096)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1096)
+++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.++ +....+.......
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~~- 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPEE- 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTTE-
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCcc-
Confidence 579999999999999999999999998766555788999999999875 5567899999999887 3332222211100
Q ss_pred cCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEE
Q 001343 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (1096)
Q Consensus 677 ~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 756 (1096)
T Consensus 80 -------------------------------------------------------------------------------- 79 (337)
T d1pbyb_ 80 -------------------------------------------------------------------------------- 79 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeee
Q 001343 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1096)
Q Consensus 757 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~ 836 (1096)
+...+..++|+|+++.++++..+.....|...... ..+.+||..++..... +. +...+.+
T Consensus 80 ------~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~----------~~~~~~d~~~~~~~~~-~~---~~~~~~~ 139 (337)
T d1pbyb_ 80 ------RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP----------TRVALYDAETLSRRKA-FE---APRQITM 139 (337)
T ss_dssp ------EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC----------CEEEEEETTTTEEEEE-EE---CCSSCCC
T ss_pred ------cccceeeEEEcCCCcEEEEeecCCcceeeeccccc----------cceeeccccCCeEEEe-cc---ccCCceE
Confidence 11123346777777777766665444444332111 1345566666665542 33 3556888
Q ss_pred eeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEE-eeCCCeEEEEeeccceeeeeecccc
Q 001343 837 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI-GTEDSTIHIYNVRVDELCVWSIDTW 915 (1096)
Q Consensus 837 l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s-~~~dg~i~iw~~~~~~~~~w~~~~~ 915 (1096)
++|+|||+++++++ +.+.+||..+++....+..+.. .....+++ ++..+.. +...+....+......
T Consensus 140 ~~~s~dg~~l~~~~-~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------- 207 (337)
T d1pbyb_ 140 LAWARDGSKLYGLG-RDLHVMDPEAGTLVEDKPIQSW-EAETYAQP-DVLAVWNQHESSGVMATPFYTARK--------- 207 (337)
T ss_dssp EEECTTSSCEEEES-SSEEEEETTTTEEEEEECSTTT-TTTTBCCC-BCCCCCCCCTTTTEEEEEEEEEBT---------
T ss_pred EEEcCCCCEEEEEc-CCcceeeeecCcEEEEeecCCc-cccceecC-Ccceeeccccccceeeeeeeeeee---------
Confidence 99999999998886 4478899999998888765443 23345556 4433332 2233333333222110
Q ss_pred ccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEe
Q 001343 916 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 994 (1096)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 994 (1096)
+...... ..++.+.+|+..++.........+ ...+..+.+++++.+++++
T Consensus 208 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~- 258 (337)
T d1pbyb_ 208 --------------------------DIDPADPTAYRTGLLTMDLETGEMAMREVRIM--DVFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp --------------------------TSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC--SSCEEEEEECTTSSEEEEE-
T ss_pred --------------------------ccceeeecccCccEEEEEcCCCcEEEEEecCC--CcceEEEEecccceEEEEc-
Confidence 0111111 246778999999888665544443 7778889999999998865
Q ss_pred cCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCCC
Q 001343 995 CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1064 (1096)
Q Consensus 995 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~~ 1064 (1096)
++.|++||+.+++....+. +...+. +++|+| ||++|++++.||.|++||..+++.
T Consensus 259 -~~~i~v~d~~~~~~~~~~~-----------~~~~~~--~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 259 -YNVLESFDLEKNASIKRVP-----------LPHSYY--SVNVST-DGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp -ESEEEEEETTTTEEEEEEE-----------CSSCCC--EEEECT-TSCEEEEESBSSEEEEEETTTCCE
T ss_pred -cccEEEEECCCCcEEEEEc-----------CCCCEE--EEEECC-CCCEEEEEeCCCcEEEEECCCCcE
Confidence 5889999999999887766 334566 699999 999999999999999999999883
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=8.8e-19 Score=191.38 Aligned_cols=292 Identities=9% Similarity=0.054 Sum_probs=204.1
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeEEeCC--CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCcc
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 586 (1096)
+++++++.|++|++||+.+.+.+..+..+ ...+.+++|+|||+++++++. .++.|.+||+.+++.+..+..+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCCc
Confidence 58999999999999999999888877654 346789999999999865542 2789999999999999888765431
Q ss_pred ----ceEEEEEeCCCCEEEEEE------------cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 587 ----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 587 ----~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.+..++|+|++++++++. .++.+.+||..+++....+.... .+..++|+|+|+++++++.
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~- 154 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR- 154 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS-
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC-
Confidence 234589999999998875 46789999999999988887654 5789999999999998864
Q ss_pred CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCcc
Q 001343 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1096)
Q Consensus 651 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 730 (1096)
.+.+||..++ +....+...... ....+++++.. +.
T Consensus 155 -~~~~~d~~~~-~~~~~~~~~~~~------~~~~~~~~~~~-------------------------------------~~ 189 (337)
T d1pbyb_ 155 -DLHVMDPEAG-TLVEDKPIQSWE------AETYAQPDVLA-------------------------------------VW 189 (337)
T ss_dssp -SEEEEETTTT-EEEEEECSTTTT------TTTBCCCBCCC-------------------------------------CC
T ss_pred -CcceeeeecC-cEEEEeecCCcc------ccceecCCcce-------------------------------------ee
Confidence 4778998877 333333222111 01122222211 11
Q ss_pred ccC-CCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecC
Q 001343 731 VDD-VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1096)
Q Consensus 731 s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~ 809 (1096)
... ..+.... .......+.........++.+.+|+.
T Consensus 190 ~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 226 (337)
T d1pbyb_ 190 NQHESSGVMAT---------------------------PFYTARKDIDPADPTAYRTGLLTMDL---------------- 226 (337)
T ss_dssp CCCTTTTEEEE---------------------------EEEEEBTTSCTTSGGGEEEEEEEEET----------------
T ss_pred ccccccceeee---------------------------eeeeeeeccceeeecccCccEEEEEc----------------
Confidence 111 0011111 11111122222333334445555554
Q ss_pred ccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEE
Q 001343 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889 (1096)
Q Consensus 810 i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~ 889 (1096)
.++......+.. +...+..+++++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| ||++|+
T Consensus 227 ------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~ 295 (337)
T d1pbyb_ 227 ------ETGEMAMREVRI--MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVW 295 (337)
T ss_dssp ------TTCCEEEEEEEE--CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEE
T ss_pred ------CCCcEEEEEecC--CCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEE
Confidence 333322222322 56778889999999988765 5899999999999998875 556789999999 999999
Q ss_pred EeeCCCeEEEEeeccce
Q 001343 890 IGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 890 s~~~dg~i~iw~~~~~~ 906 (1096)
+++.||+|++||..+.+
T Consensus 296 v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 296 LGGALGDLAAYDAETLE 312 (337)
T ss_dssp EESBSSEEEEEETTTCC
T ss_pred EEeCCCcEEEEECCCCc
Confidence 99999999999999887
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=5.6e-19 Score=193.80 Aligned_cols=302 Identities=8% Similarity=-0.039 Sum_probs=206.8
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC-CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
+.+++++++++.+++|.+||+.+.+....+.. +...+.+++|+|||+++++++. .++.|++||+.+++.+..+...
T Consensus 5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---CCCcEEEEeCccCeeeeeeccc
Confidence 34779999999999999999999988887764 4456889999999999876553 2789999999999999887654
Q ss_pred Ccc-----ceEEEEEeCCCCEEEEEE------------cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEE
Q 001343 584 RKK-----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 584 ~~~-----~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
... .+..++|+|+|+++++++ .++.+.+|+..+++....+..+.....+..+.+++++.++++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 321 234589999999988765 477899999888766544433322235667778888776654
Q ss_pred EECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCC
Q 001343 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD 726 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 726 (1096)
+ +.+.+|++.++ +....+..... +..+.++|++..+
T Consensus 162 ~---~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~---------------------------------- 197 (346)
T d1jmxb_ 162 G---PDIYKMDVKTG-KYTVALPLRNW------NRKGYSAPDVLYF---------------------------------- 197 (346)
T ss_dssp S---SSEEEECTTTC-CEEEEECSTTC------CCTTBCCCBCCCC----------------------------------
T ss_pred C---CcceEEEccCC-CEEEEEecCCC------ccceEEeccccEE----------------------------------
Confidence 3 46889998777 33333332211 1223334433322
Q ss_pred CCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceee
Q 001343 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 806 (1096)
Q Consensus 727 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~ 806 (1096)
.+....++.+.+++.. ..+.+....+.+...++.+.+|++.
T Consensus 198 --~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~------------ 238 (346)
T d1jmxb_ 198 --WPHQSPRHEFSMLYTI-------------------------ARFKDDKQDPATADLLYGYLSVDLK------------ 238 (346)
T ss_dssp --CCCCCTTCEEEEEEEE-------------------------EEC-------CCCEEEEEEEEEETT------------
T ss_pred --EEEecCCCceEeeeee-------------------------eeeccCceeEeeccCCceEEEEECC------------
Confidence 1222222333333322 1111222334444445666677653
Q ss_pred ecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCc
Q 001343 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN 886 (1096)
Q Consensus 807 ~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~ 886 (1096)
++........+ +...+..+.+++++.+++...++.|.+||..+++.+..+. +...+.+++|+| ||+
T Consensus 239 ----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~ 304 (346)
T d1jmxb_ 239 ----------TGKTHTQEFAD--LTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGD 304 (346)
T ss_dssp ----------TCCEEEEEEEE--CSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSS
T ss_pred ----------CCceEEEEeec--ccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCC
Confidence 23222222322 6677888999999999998888899999999999988875 445799999999 899
Q ss_pred EEEEeeCCCeEEEEeeccce
Q 001343 887 IIAIGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 887 ~l~s~~~dg~i~iw~~~~~~ 906 (1096)
+|++++.||.|++||+.+++
T Consensus 305 ~l~v~~~d~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 305 KLYLGGTFNDLAVFNPDTLE 324 (346)
T ss_dssp CEEEESBSSEEEEEETTTTE
T ss_pred EEEEEeCCCcEEEEECccCC
Confidence 99999999999999999988
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.79 E-value=1.5e-16 Score=176.41 Aligned_cols=292 Identities=7% Similarity=-0.042 Sum_probs=201.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEE----eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg----~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
.+..++.+++++|||++++++. +..+.|.+||..+++.+.+ +..+.. ..++||||
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~SpD 76 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAHS 76 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcCC
Confidence 3778899999999999755542 2346799999999998754 333332 36999999
Q ss_pred CCEEEEEEC----------CCeEEEEEccCCCccccceeecccccCE-------EEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 418 GNYVGVAFT----------KHLIQLYSYAGSNDLRQHSQIDAHVGAV-------NDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 418 ~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~l~~h~~~v-------~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
|++|++++. ++.|.+||..+++.... +..+.... ..+.|+++++.+++.....++.+.+|
T Consensus 77 G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~ 153 (373)
T d2madh_ 77 GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred CCEEEEEeecCCcccccccceEEEEEECCCCcEEEE---EecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence 999998753 57899999999887653 33343332 45789999996445555667889999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC------CCcEEEEEEcCCCCEE
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRL 553 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~l 553 (1096)
+ ..++..... ....++.+++.+. ..+++.+.||.+.+|+............. ......+.+++++.++
T Consensus 154 ~~~~~~~~~~~----~~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T d2madh_ 154 VQGGSSDDQLL----SSPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV 228 (373)
T ss_pred eccCCeEEEEe----ccceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE
Confidence 9 655544333 3356777777543 46678899999999998877666543321 1134455666666665
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEE--EcCcCc---------cceEEEEEeCCCCEE----------EEEEcCCeEEEE
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRT--YAGFRK---------KSNGVVQFDTTQNHF----------LAVGEDSQIKFW 612 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~--~~~~~~---------~~i~~~~~~~~~~~l----------~~~~~dg~i~iw 612 (1096)
+... ++.+.+|+..++..... ...... .....+++++++..+ +....++.+.+|
T Consensus 229 ~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~ 303 (373)
T d2madh_ 229 WPVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred EecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence 5443 77888888877654322 111111 122335556665544 345567789999
Q ss_pred eCCCCeEEEEeecCCCCCCccEEEEeCCCC--EEEEEECCCcEEEEEcCCCccccccccCC
Q 001343 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNGFKILANAIGLRSLRAVENP 671 (1096)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 671 (1096)
|..+++.+..+.... .+..++|+|||+ ++++++.|+.|++||+.++ +.++.+..+
T Consensus 304 d~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg-~~~~~~~~~ 360 (373)
T d2madh_ 304 TGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQSTVEL 360 (373)
T ss_pred ECCCCcEEEEecCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEECCC
Confidence 999999988876433 678999999998 4467889999999999999 566666544
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.76 E-value=2.5e-15 Score=166.31 Aligned_cols=203 Identities=9% Similarity=-0.025 Sum_probs=138.4
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEE-----CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe----
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG---- 472 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s---- 472 (1096)
...+..++.+++++|||+.+++.. ..+.|.+||..+++.+. ++..+... .++|+|||+ +|++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~ 88 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFS 88 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCC--EEEEEeecCC
Confidence 345788999999999999987652 34579999999988776 35455443 799999999 565553
Q ss_pred ------CCCcEEEEE-cCCceEEEeeCCCCCeEE-------EEeeecCCCcEEEE--EECCCeEEEEEcCCCCeeeEEeC
Q 001343 473 ------DDKLIKVWE-LSGRKLFNFEGHEAPVYS-------ICPHHKENIQFIFS--TAIDGKIKAWLYDTMGSRVDYDA 536 (1096)
Q Consensus 473 ------~d~~i~iwd-~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~ 536 (1096)
.++.|.+|| .+++.+..+..+...... +.|++. ++.++. ...++.+.+|+....+.....
T Consensus 89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~~~~~~~~~~~~~~~~~-- 164 (373)
T d2madh_ 89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN--NADLLFFQFAAGPAVGLVVQGGSSDDQLL-- 164 (373)
T ss_pred cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeC--CCcEEEEEEcCCCceEEeeccCCeEEEEe--
Confidence 468899999 889998888776655433 455553 344333 344567788877665443332
Q ss_pred CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc-----cceEEEEEeCCCCEEEEEEcCCeEEE
Q 001343 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1096)
Q Consensus 537 ~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~i 611 (1096)
....++.++|+|+.+++... .++.+.+|+...+........+.. .......+++++ .++..+.++.+++
T Consensus 165 --~~~~~~~~s~~g~~~~v~~~---~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~ 238 (373)
T d2madh_ 165 --SSPTCYHIHPGAPSTFYLLC---AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQ 238 (373)
T ss_pred --ccceeEEEecCCCcEEEEEc---CCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEE
Confidence 23567889999987754332 289999999998887766543221 122234455544 4556667888999
Q ss_pred EeCCCCeEEE
Q 001343 612 WDMDNVNILT 621 (1096)
Q Consensus 612 wd~~~~~~~~ 621 (1096)
|+...+....
T Consensus 239 ~~~~~~~~~~ 248 (373)
T d2madh_ 239 ADISAAGATN 248 (373)
T ss_pred EEcCCCeEEE
Confidence 9987765443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.7e-16 Score=172.61 Aligned_cols=290 Identities=11% Similarity=0.095 Sum_probs=183.6
Q ss_pred EEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE-CCCcEEEEEcCCCccccccccCCCccccc
Q 001343 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALR 677 (1096)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 677 (1096)
.+++++.|++|++|++.....+..+....+...+..++|+|||++|++++ .|+.|++|++.......
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~------------ 73 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL------------ 73 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE------------
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE------------
Confidence 34667799999999997654333332112223789999999999986665 48999999986541110
Q ss_pred CcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEc
Q 001343 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (1096)
Q Consensus 678 ~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 757 (1096)
.+.. ...
T Consensus 74 -------------------------------------------------------------~~~~-----------~~~- 80 (333)
T d1ri6a_ 74 -------------------------------------------------------------TFAA-----------ESA- 80 (333)
T ss_dssp -------------------------------------------------------------EEEE-----------EEE-
T ss_pred -------------------------------------------------------------EEee-----------ecc-
Confidence 0000 001
Q ss_pred CCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeee
Q 001343 758 PESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1096)
Q Consensus 758 ~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~ 836 (1096)
+...+..++|+|||+++++++. ++.+.+|+...... .... .... +...+.+
T Consensus 81 -----~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~-------------------~~~~--~~~~--~~~~~~~ 132 (333)
T d1ri6a_ 81 -----LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-------------------VGVV--DVVE--GLDGCHS 132 (333)
T ss_dssp -----CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-------------------EEEE--EEEC--CCTTBCC
T ss_pred -----cCCCceEEEEcCCCCEEeecccCCCceeeeccccccc-------------------eecc--cccC--CCccceE
Confidence 3334567899999998888875 67888887643211 0000 1111 5667888
Q ss_pred eeecCCCcEEEEec--CCeEEEEEcccceEEE------eecCCCCCeeEEEEecCCCcEEEEe-eCCCeEEEEeecccee
Q 001343 837 IALSKNDSYVMSAT--GGKISLFNMMTFKVMT------TFMSPPPASTFLAFHPQDNNIIAIG-TEDSTIHIYNVRVDEL 907 (1096)
Q Consensus 837 l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~------~~~~h~~~i~~l~~s~~d~~~l~s~-~~dg~i~iw~~~~~~~ 907 (1096)
+.++||++++++++ +..|.+|+..+..... ....+......++|++ ++..++.. ...+...+|++.....
T Consensus 133 v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 211 (333)
T d1ri6a_ 133 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHG 211 (333)
T ss_dssp CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTS
T ss_pred EEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEec-cceeEEeeccccCceEEEeeccccc
Confidence 99999999988887 3779999986543221 1223445678899999 77766554 4566778887654330
Q ss_pred eeeeccccccccceeeecCC-CCCC-CCCceEEEecCCcEEEE-E-ecceEEEEEcccceeccccccCCCCCCCceEEEE
Q 001343 908 CVWSIDTWEKRKSVTIHIPA-GKTP-TGDTRVQFNADQVRMLV-V-HETQLAIYDASKMERIRQWTPQDALSAPISCAVY 983 (1096)
Q Consensus 908 ~~w~~~~~~~~~~~~~~~~~-~~~~-~~v~~v~fs~dg~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~ 983 (1096)
.. .....+.... .... .....+++++|+++++. . .++.+.+|++..................+..++|
T Consensus 212 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~ 283 (333)
T d1ri6a_ 212 NI--------ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV 283 (333)
T ss_dssp CC--------EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEE
T ss_pred ce--------eeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEE
Confidence 00 0000111111 1111 25567899999998888 3 5788999998765444333322112566789999
Q ss_pred eeCCcEEEEEe-cCCcEEEEec--CCCcee
Q 001343 984 SCNSQLVFATF-CDGNIGVFDA--DTLRLR 1010 (1096)
Q Consensus 984 s~dg~~la~~~-~dg~i~vwd~--~~~~~~ 1010 (1096)
+|||++|++++ .++.|++|++ ++|++.
T Consensus 284 spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 284 DHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp CTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence 99999987775 4588999954 567653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=1.8e-16 Score=174.23 Aligned_cols=292 Identities=12% Similarity=0.065 Sum_probs=194.1
Q ss_pred ceEEEEEcCCCCcEEEEE----eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 346 TVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg----~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
++.-.+.+|||++++++. ..++.|.+||..+++.+.+ +..+. +..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g~--~~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGF--LPNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECS--SCEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECCC--CCceEEcCCCCEE
Confidence 344456789999755443 2456799999999987753 22232 3369999999988
Q ss_pred EEEE----------CCCeEEEEEccCCCccccceeeccc----ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 422 GVAF----------TKHLIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 422 ~s~~----------~dg~i~vwd~~~~~~~~~~~~l~~h----~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
++++ .|+.|++||..+++..........+ ......++|+++++.++++..+.+..+.+|+ .+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 8653 4789999999998876643221111 2234568999999954444445678999999 88888
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe------CCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD------APGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
+..+..+..... + +. .....++.+.||...++............ .+...+....+++++..++.++.
T Consensus 142 ~~~~~~~~~~~~---~-~~-~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (355)
T d2bbkh_ 142 KRMLDVPDCYHI---F-PT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 214 (355)
T ss_dssp EEEEECCSEEEE---E-EE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred eeEEecCCcceE---e-ec-CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence 877765432211 1 11 11344555666666666554443333222 12224555677788888888775
Q ss_pred CCCCeEEEEeCCCCeeeE--EEcCcCc---------cceEEEEEeCCCCEEEEEEcC----------CeEEEEeCCCCeE
Q 001343 561 DGDSFLVEWNESEGTIKR--TYAGFRK---------KSNGVVQFDTTQNHFLAVGED----------SQIKFWDMDNVNI 619 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~--~~~~~~~---------~~i~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~ 619 (1096)
++.+++|+...+.... ....+.. .....+++++++..++....+ ..|.+||..+++.
T Consensus 215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 8899999998775422 2221110 012347889999988776533 3699999999999
Q ss_pred EEEeecCCCCCCccEEEEeCCCC--EEEEEECCCcEEEEEcCCCccccccccCC
Q 001343 620 LTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNGFKILANAIGLRSLRAVENP 671 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 671 (1096)
+..+.... .+.+++|+|||+ ++++++.|+.|++||..++ +.++.+...
T Consensus 293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~~~ 342 (355)
T d2bbkh_ 293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQL 342 (355)
T ss_dssp EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEECCC
T ss_pred EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEeCc
Confidence 88876543 578999999997 4566677999999999998 556666543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.1e-15 Score=166.05 Aligned_cols=277 Identities=13% Similarity=0.166 Sum_probs=185.7
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEccC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAG 437 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~ 437 (1096)
++++++.|++|+||++.+...+.. ++ ...|.+.|..|+|||||++|++++ .|+.|++|++..
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~--~~---------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~ 68 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTL--TQ---------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEE--EE---------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEECCCCCcEEEEEEcCCCCeEE--EE---------------EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence 567788999999999976543321 00 234788999999999999996665 489999999987
Q ss_pred CCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEEE-cCCceE--EEeeCCCCCeEEEEeeecCCCcEEEE
Q 001343 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFS 513 (1096)
Q Consensus 438 ~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s 513 (1096)
............+...+..++|+|||+ +|++++ .++.|.+|+ ...... .....+...+.++.+++ +++++++
T Consensus 69 ~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~~ 144 (333)
T d1ri6a_ 69 DDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLWV 144 (333)
T ss_dssp TTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEEE
T ss_pred CCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeee--cceeeec
Confidence 654433222234556678899999999 566665 577899998 444333 33445667788888876 5567666
Q ss_pred EE-CCCeEEEEEcCCCCeeeE------EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe----eeEEEcC
Q 001343 514 TA-IDGKIKAWLYDTMGSRVD------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAG 582 (1096)
Q Consensus 514 ~~-~dg~i~iwd~~~~~~~~~------~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~ 582 (1096)
++ .+..|.+|+......... ..........++|++++..++.... ..+...+|+..... .......
T Consensus 145 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~ 221 (333)
T d1ri6a_ 145 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECVQTLDM 221 (333)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred cccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc---ccCceEEEeecccccceeeeeeeee
Confidence 66 456799999876554331 2234456789999999999887653 25566677654321 1222211
Q ss_pred c-----CccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEee-cCCCCCCccEEEEeCCCCEEEEEE-CCCcEE
Q 001343 583 F-----RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTD-AEGGLPNLPRLRFSKEGNLLAVTT-ADNGFK 654 (1096)
Q Consensus 583 ~-----~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 654 (1096)
. .......+++++++++++... .++.+.+|++.......... .......+..++|+|||++|++++ .++.|+
T Consensus 222 ~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~ 301 (333)
T d1ri6a_ 222 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHIS 301 (333)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred eecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEE
Confidence 1 112355678999998877655 67789999887643322221 111122578899999999887776 468899
Q ss_pred EEEcC
Q 001343 655 ILANA 659 (1096)
Q Consensus 655 iwd~~ 659 (1096)
+|++.
T Consensus 302 v~~id 306 (333)
T d1ri6a_ 302 VYEIV 306 (333)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.66 E-value=5.5e-15 Score=162.16 Aligned_cols=316 Identities=13% Similarity=0.047 Sum_probs=192.2
Q ss_pred EEEecCCCcEEEEEE-----eCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE----------ECCCeE
Q 001343 457 LAFAYPNKLLCVVTC-----GDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----------AIDGKI 520 (1096)
Q Consensus 457 l~~s~d~~~~~l~s~-----s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i 520 (1096)
.+.+||++. ++.. ..+++|.+|| .+++.+.++..+..+ .++|+| ||++|++. +.|+.|
T Consensus 7 ~a~spdg~~--~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~Sp--Dg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 7 EAPAPDARR--VYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVAD--DGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCCCCCTTE--EEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEE
T ss_pred EeeCCCCCE--EEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcC--CCCEEEEEeCCCccccccCCCCEE
Confidence 356799995 4433 3456799999 899999988766554 688876 66777654 457899
Q ss_pred EEEEcCCCCeeeEEeCCCC-------cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEE
Q 001343 521 KAWLYDTMGSRVDYDAPGH-------WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~-------~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 593 (1096)
++||..+.+.......+.. ....++|++++++++++.. ..+..+.+|+..+++.+..+..+....+ +
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 154 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF--SPAPAVGVVDLEGKAFKRMLDVPDCYHI----F 154 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC--SSSCEEEEEETTTTEEEEEEECCSEEEE----E
T ss_pred EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecC--CCCceeeeeecCCCcEeeEEecCCcceE----e
Confidence 9999999888776543322 2356899999999987753 2367899999999999888876543111 1
Q ss_pred eCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec----CCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccc-ccc
Q 001343 594 DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA----EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL-RAV 668 (1096)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~ 668 (1096)
.......+..+.|+...++............. ......+....+.+++..++.++.++.+.+|++..+.... ...
T Consensus 155 ~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 234 (355)
T d2bbkh_ 155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 234 (355)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEecc
Confidence 11122333444444444444333222222211 1122245667888899999999999999999987662111 000
Q ss_pred cCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeec
Q 001343 669 ENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVD 748 (1096)
Q Consensus 669 ~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~ 748 (1096)
..+... .....+.
T Consensus 235 ~~~~~~-----~~~~~~~-------------------------------------------------------------- 247 (355)
T d2bbkh_ 235 EALTEA-----ERADGWR-------------------------------------------------------------- 247 (355)
T ss_dssp ESSCHH-----HHHTTEE--------------------------------------------------------------
T ss_pred CCcccc-----eEeeeee--------------------------------------------------------------
Confidence 000000 0000000
Q ss_pred CCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCC
Q 001343 749 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 828 (1096)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~ 828 (1096)
......+++++++..++....++...+.. .....+.+||..+++.+. .+.
T Consensus 248 ---------------p~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~v~v~d~~t~~~~~-~~~-- 297 (355)
T d2bbkh_ 248 ---------------PGGWQQVAYHRALDRIYLLVDQRDEWRHK------------TASRFVVVLDAKTGERLA-KFE-- 297 (355)
T ss_dssp ---------------ECSSSCEEEETTTTEEEEEEEECCTTCTT------------SCEEEEEEEETTTCCEEE-EEE--
T ss_pred ---------------ccceEEEEEeCCCCeEEEEeccCCceeec------------CCCCeEEEEeCCCCcEEE-Eec--
Confidence 01112355667776665554432111000 001134455566666554 222
Q ss_pred CcCCCeeeeeecCCCc--EEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEec
Q 001343 829 NLEEAVPCIALSKNDS--YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1096)
Q Consensus 829 ~~~~~v~~l~~s~dg~--~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 882 (1096)
+...+.+++|+|||+ +++++. ++.|+|||+.+++.++++..+......+.+.+
T Consensus 298 -~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d 353 (355)
T d2bbkh_ 298 -MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353 (355)
T ss_dssp -EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred -CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence 345688999999997 345555 79999999999999999987766666666554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.60 E-value=9.9e-14 Score=158.40 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=110.1
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC-
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT- 426 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~- 426 (1096)
..+.|.++++ ++.. .|+.|.+||+.+++.... +....+..|...|.++.|||||++|+.++.
T Consensus 20 ~~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~ 82 (470)
T d2bgra1 20 YSLRWISDHE-YLYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (470)
T ss_dssp CCCEECSSSE-EEEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEE
T ss_pred cCCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECC
Confidence 3577899998 5653 688999999999986531 112346778889999999999999998853
Q ss_pred --------CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC----
Q 001343 427 --------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH---- 493 (1096)
Q Consensus 427 --------dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~---- 493 (1096)
++.+.+||+.+++.. .+..|.+.+..+.|||||+ .||.. .++.+++|+ ..++.......+
T Consensus 83 ~~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~ 155 (470)
T d2bgra1 83 VKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (470)
T ss_dssp EECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred cceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCc
Confidence 467899999997643 3678999999999999999 67765 478999999 666655433221
Q ss_pred --------------CCCeEEEEeeecCCCcEEEEEECCCe-EEEEE
Q 001343 494 --------------EAPVYSICPHHKENIQFIFSTAIDGK-IKAWL 524 (1096)
Q Consensus 494 --------------~~~v~~~~~~~~~~~~~l~s~~~dg~-i~iwd 524 (1096)
.+....+.|+| ||+.|+....|.+ +..|.
T Consensus 156 ~~~g~~d~~~~~~~~~~~~~~~wSP--DGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 156 IYNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEE
T ss_pred ccccccceeeeeeecCCccccEECC--CCCccceeEecCCcCceEE
Confidence 12334566765 7788888776543 44443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.53 E-value=2.1e-12 Score=147.24 Aligned_cols=111 Identities=13% Similarity=0.136 Sum_probs=86.4
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC----ccceEEEEEeCCCCEEEEEEc---------CCe
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----KKSNGVVQFDTTQNHFLAVGE---------DSQ 608 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~---------dg~ 608 (1096)
.++.|.+++.++... ++.+.+||+.+++....+..+. ...+.++.|+|||++|+.++. ++.
T Consensus 20 ~~~~W~~d~~~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 20 YSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCCEECSSSEEEEES------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cCCEeCCCCEEEEEc------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCce
Confidence 357788999877642 6789999999999877666542 126788999999999998753 567
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001343 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
+++||+.+++... +..+. ..+..+.|||||+.+|... ++.+.+|+..++.
T Consensus 94 ~~l~d~~~~~~~~-l~~~~--~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~ 143 (470)
T d2bgra1 94 YDIYDLNKRQLIT-EERIP--NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP 143 (470)
T ss_dssp EEEEETTTTEECC-SSCCC--TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred EEEEECCCCcccc-cccCC--ccccccccccCcceeeEee-cccceEEECCCCc
Confidence 8999999987543 44443 3789999999999999864 5689999988773
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.51 E-value=3e-13 Score=148.72 Aligned_cols=289 Identities=7% Similarity=-0.061 Sum_probs=188.8
Q ss_pred CCCceEEEEEcCCCCcEEEE--EeCCC--eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCC
Q 001343 343 QGSTVISMDFHPSHQTLLLV--GSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llas--g~~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 418 (1096)
+.+....++..++++...++ ...++ .|.+||..+++.+.. +.++... .++|+|||
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg 76 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG 76 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence 34455666778888853333 33444 466779888887653 3334333 58999999
Q ss_pred CEEEEEE----------CCCeEEEEEccCCCccccceeecc-----cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 419 NYVGVAF----------TKHLIQLYSYAGSNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 419 ~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~l~~-----h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
++|++++ .|+.|.+||..+++....+. +.. .......++|+|||+. ++++...++.+.+|| .
T Consensus 77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~-~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~~ 154 (368)
T d1mdah_ 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVP 154 (368)
T ss_dssp SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEET
T ss_pred CEEEEEcccCccccccccCCeEEEEECCCCcEeeeec-CCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEECC
Confidence 9998765 36789999999987765321 111 1122346899999994 334445689999999 8
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe------CCCCcEEEEEEcCCCCEEEEE
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD------APGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
+++.+..+..+..... .+.+ ...++..+.||.+.+|++.......... .+...+....+.+++..+...
T Consensus 155 ~~~~~~~~~~~~~~~~----~~~~-~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (368)
T d1mdah_ 155 GASDDQLTKSASCFHI----HPGA-AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229 (368)
T ss_dssp TTEEEEEEECSSCCCC----EEEE-TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred CCcEeEEeeccCcceE----ccCC-CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence 8888888776654432 1222 2467778889999999887655443322 222244567777887666554
Q ss_pred eeccCCCCeEEEEeCCCCeeeEEEc--CcCc---------cceEEEEEeCCCCEEEEEEcC---------CeEEEEeCCC
Q 001343 557 GTSKDGDSFLVEWNESEGTIKRTYA--GFRK---------KSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDN 616 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~--~~~~---------~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~ 616 (1096)
.+.+++++...+....... .... .....+++++++..++....+ ..|.+||..+
T Consensus 230 ------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t 303 (368)
T d1mdah_ 230 ------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp ------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred ------CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC
Confidence 4456666665544332211 1100 012237788998887765422 3599999999
Q ss_pred CeEEEEeecCCCCCCccEEEEeCCCC--EEEEEECCCcEEEEEcCCCcccccccc
Q 001343 617 VNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNGFKILANAIGLRSLRAVE 669 (1096)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~ 669 (1096)
++.+..+.... .+..++|+|||+ +++++..|+.|++||..++ +.+..+.
T Consensus 304 ~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~ 354 (368)
T d1mdah_ 304 GQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp CCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence 99888776542 678999999996 3456667899999999998 5555554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.42 E-value=3.6e-12 Score=139.94 Aligned_cols=306 Identities=7% Similarity=-0.077 Sum_probs=172.9
Q ss_pred ECCCe--EEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec------cCCCCeEEEEeCCCCeeeEEEcCcCcc
Q 001343 515 AIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEGTIKRTYAGFRKK 586 (1096)
Q Consensus 515 ~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~------~~~~~~i~iwd~~~~~~~~~~~~~~~~ 586 (1096)
..+|. +.+||..+++.+.....+... .++|+|||+.+++.+.. ...++.|.+||..+++.+..+..+...
T Consensus 41 ~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~ 118 (368)
T d1mdah_ 41 YFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP 118 (368)
T ss_dssp TTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred cCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccc
Confidence 34454 566688777777666655543 58999999999876531 122567999999999998887644321
Q ss_pred ------ceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 587 ------SNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 587 ------~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
....++|+|||++++++. .++.+.+||+.+++....+..+... . + +......++..+.||.+.+|++.
T Consensus 119 ~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~--~--~-~~~~~~~~v~~~~Dg~~~~~~~~ 193 (368)
T d1mdah_ 119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF--H--I-HPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC--C--C-EEEETTEEECCCCTTSCEEEECC
T ss_pred eecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc--e--E-ccCCCceEEEEcCCCCEEEEEec
Confidence 123488999999998876 5799999999999999888765431 1 1 11234566667778888888876
Q ss_pred CCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCcc
Q 001343 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPK 739 (1096)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~ 739 (1096)
....................+....+.+++..+.... ++..+..-..+.+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------------------------~~v~~~~~~~~~~~ 244 (368)
T d1mdah_ 194 AAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-----------------------------SSILQGDIPAAGAT 244 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-----------------------------SCCEEEECCSSCCE
T ss_pred CCceeeeeeecccccccccceeecccccCcEEEEecC-----------------------------CCEEEEeecCCceE
Confidence 6532222211111111222333455555554442111 11111111112222
Q ss_pred ceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccc
Q 001343 740 PWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 819 (1096)
Q Consensus 740 iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~ 819 (1096)
+++........... .+ ........+++++++..++....++.. ........+.+||..+++
T Consensus 245 ~~~~~~~~~~~~~~----~~--~~~~g~~~~a~~~~~~~~~v~~~~~~~-------------~~~~~~~~v~v~D~~t~~ 305 (368)
T d1mdah_ 245 MKAAIDGNESGRKA----DN--FRSAGFQMVAKLKNTDGIMILTVEHSR-------------SCLAAAENTSSVTASVGQ 305 (368)
T ss_dssp EECCCCSSCTHHHH----TT--EEECSSSCEEEETTTTEEEEEEEECSS-------------CTTSCEEEEEEEESSSCC
T ss_pred EEeecccccceeee----ee--ecCCCceeEEEcCCCCEEEEEecCCCc-------------eeecCCceEEEEECCCCc
Confidence 22211000000000 00 000112235667776655444332110 001111245567777777
Q ss_pred cccccccCCCcCCCeeeeeecCCCc-E-EEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEE
Q 001343 820 LMANDVAGVNLEEAVPCIALSKNDS-Y-VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAF 880 (1096)
Q Consensus 820 ~~~~~~~g~~~~~~v~~l~~s~dg~-~-la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~ 880 (1096)
.+. .+. +...+.+++|||||+ + ++++. ++.|+|||..+|+.++++..... -..|++
T Consensus 306 ~~~-~~~---~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~ 364 (368)
T d1mdah_ 306 TSG-PIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV 364 (368)
T ss_dssp EEE-CCE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred EeE-Eec---CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence 665 233 446788999999997 3 34544 68999999999999999875432 334443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.42 E-value=1.8e-13 Score=147.76 Aligned_cols=230 Identities=9% Similarity=-0.050 Sum_probs=153.1
Q ss_pred EEEEECCCeEEEEEccCCCccccceeec---------------------------ccccCEEEEEEecCCCcEEEEEEeC
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQID---------------------------AHVGAVNDLAFAYPNKLLCVVTCGD 473 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~---------------------------~h~~~v~~l~~s~d~~~~~l~s~s~ 473 (1096)
+++++.+|.|+||++.+++.++.+-.+. .|.-......++|||++ ++++...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~-lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKY-LFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEE-EEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCE-EEEEcCC
Confidence 4577889999999998887665432221 13344566667899995 4566678
Q ss_pred CCcEEEEE-cCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCC-----------------eEEEEEcCCCCeeeEE
Q 001343 474 DKLIKVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDG-----------------KIKAWLYDTMGSRVDY 534 (1096)
Q Consensus 474 d~~i~iwd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg-----------------~i~iwd~~~~~~~~~~ 534 (1096)
++.|.++| .++++...+. .+...+..++|+++++-.+++..+.+. .+..+|..+.+.....
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 89999999 8888877665 356678999998765444665555442 2355777777776655
Q ss_pred eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 535 ~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
.... ....+.++|+|+++++.+.. ...+..++..+.+....+.... ....+.+.++|+++..+ .++.+.+++.
T Consensus 173 ~v~~-~p~~v~~spdGk~a~vt~~n---se~~~~id~~t~~~~d~i~v~n--~p~~~~~~~dGk~~~v~-~~~v~vvd~~ 245 (441)
T d1qnia2 173 IVDG-NLDNTDADYTGKYATSTCYN---SERAVDLAGTMRNDRDWVVVFN--VERIAAAVKAGNFKTIG-DSKVPVVDGR 245 (441)
T ss_dssp EESS-CCCCEEECSSSSEEEEEESC---TTCCSSHHHHTCSSBCEEEEEE--HHHHHHHHHTTCCBCCT-TCCCCEEECS
T ss_pred ecCC-CccceEECCCCCEEEEEecC---CCceEEEeccCcceEEEEEeCC--ccceEEEecCCCEEEeC-CCCcEEEEcc
Confidence 5443 47789999999999987642 2223233333333322221111 11113456788876554 4678888887
Q ss_pred CCCeEEEEeecCCCCCCccEEEEeCCCCEEEE-EECCCcEEEEEcCCC
Q 001343 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV-TTADNGFKILANAIG 661 (1096)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~ 661 (1096)
.....+..+.... ....+.++|||+++++ +..+++|.+||+.+.
T Consensus 246 ~~~~v~~~IPvgk---sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 246 GESEFTRYIPVPK---NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp SSCSSEEEECCBS---SCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred cCCceEEEEeCCC---CccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence 7777777776544 4578999999998765 556899999998643
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.40 E-value=2e-13 Score=147.42 Aligned_cols=326 Identities=11% Similarity=-0.014 Sum_probs=197.9
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCeeecccc------eeecccccCccc-----cccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPF------KIWDMAACSLPF-----QASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 356 g~~llasg~~dg~I~iwd~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
+-+.+++|+.+|.|.||++.+++.+....+ ..|-....+... .......|.-...+..++|||++|++.
T Consensus 10 e~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~ 89 (441)
T d1qnia2 10 EYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIN 89 (441)
T ss_dssp SEEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEE
T ss_pred CEEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEE
Confidence 335678889999999999999988865322 011110000000 000122355567777788999999776
Q ss_pred E-CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC-----------------cEEEEE-cCCc
Q 001343 425 F-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----------------LIKVWE-LSGR 485 (1096)
Q Consensus 425 ~-~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~-----------------~i~iwd-~~~~ 485 (1096)
. .++.|.++|+.+++..+.+ . ..+...+..++|+|+++..+++..+.+. .+..+| .+.+
T Consensus 90 d~~~~rVavIDl~t~k~~~ii-~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~ 167 (441)
T d1qnia2 90 DKANTRVARIRLDIMKTDKIT-H-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD 167 (441)
T ss_dssp ETTTTEEEEEETTTTEEEEEE-E-CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred cCCCCEEEEEECCCCcEeeEE-e-cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence 5 5689999999998765532 1 2456789999999999975555554432 234577 6666
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC-eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCC
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~ 564 (1096)
...++... .....+.++| +|+++++.+.+. .+..++..+.......... ..-..+.++++|+++..++ ++
T Consensus 168 v~~qI~v~-~~p~~v~~sp--dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~dGk~~~v~~-----~~ 238 (441)
T d1qnia2 168 VAWQVIVD-GNLDNTDADY--TGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIGD-----SK 238 (441)
T ss_dssp EEEEEEES-SCCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHHTTCCBCCTT-----CC
T ss_pred eeEEEecC-CCccceEECC--CCCEEEEEecCCCceEEEeccCcceEEEEEeC-CccceEEEecCCCEEEeCC-----CC
Confidence 66665533 3467778866 668888777653 2322333222222111110 0112234568898876653 66
Q ss_pred eEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEE-EEcCCeEEEEeCCCCeE----------EEEeecCCCCCCcc
Q 001343 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDNVNI----------LTSTDAEGGLPNLP 633 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~v~ 633 (1096)
.+.+++....+.++.+..... ...+.++|||+++++ +..+++|.+||+.+... ....+.... -...
T Consensus 239 v~vvd~~~~~~v~~~IPvgks--PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~g-lgpl 315 (441)
T d1qnia2 239 VPVVDGRGESEFTRYIPVPKN--PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELG-LGPL 315 (441)
T ss_dssp CCEEECSSSCSSEEEECCBSS--CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCC-SCEE
T ss_pred cEEEEcccCCceEEEEeCCCC--ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccc-cCcc
Confidence 777887777777788776543 455899999998766 45889999999865221 000111111 1335
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCc---------cccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIGL---------RSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
..+|.++|+.+.+...|..|..|++.... .....+..|-...+...+.+.+++|||++|++.
T Consensus 316 h~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~ 386 (441)
T d1qnia2 316 HTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL 386 (441)
T ss_dssp EEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred cceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence 56899999999999999999999985221 112222222222233334455666777777555
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.09 E-value=2.3e-08 Score=107.87 Aligned_cols=171 Identities=10% Similarity=0.055 Sum_probs=103.8
Q ss_pred CeeeeeecCCCcEEEEec--CCeEEEEEccc-ceEE--Eee--cCCCCCeeEEEEecCCCcEEEEe-eCCCeEEEEeecc
Q 001343 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVM--TTF--MSPPPASTFLAFHPQDNNIIAIG-TEDSTIHIYNVRV 904 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~--dg~v~iwd~~~-~~~~--~~~--~~h~~~i~~l~~s~~d~~~l~s~-~~dg~i~iw~~~~ 904 (1096)
.+.+++|+|||+++++++ .+.|.+|+... +... ... .........++|+| +++++.+. ..+++|.+|++..
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence 467899999999998887 36798887643 3322 222 13356788999999 88877554 4688999999987
Q ss_pred ceeeee-eccc---cccccceeeecCCCCCCCCCceEEEecCCcEEEEE--ecc-----eEEEEEcccceecc------c
Q 001343 905 DELCVW-SIDT---WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV--HET-----QLAIYDASKMERIR------Q 967 (1096)
Q Consensus 905 ~~~~~w-~~~~---~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~--~d~-----~i~iwd~~~~~~~~------~ 967 (1096)
+..... .... ................ .....+.++|||++|+++ .+. .|..|++.....+. .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGL-YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBS-EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCceEEEEeeeecccccccccccccccccc-CCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 651111 0000 0000000000000111 134578999999999883 222 37777775322111 1
Q ss_pred cccCCCCCCCceEEEEee-CCcEEEEEe-cCCcEEEEecCCCc
Q 001343 968 WTPQDALSAPISCAVYSC-NSQLVFATF-CDGNIGVFDADTLR 1008 (1096)
Q Consensus 968 ~~~~~~~~~~i~~l~~s~-dg~~la~~~-~dg~i~vwd~~~~~ 1008 (1096)
.... ......++++| +|++|+++. .++.|.||+++...
T Consensus 304 ~~~~---G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 304 TPTS---GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CSSC---CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EEcC---CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 1111 34567899998 899877664 67899999886554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=4.6e-08 Score=100.88 Aligned_cols=241 Identities=13% Similarity=0.078 Sum_probs=153.2
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCC--eEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|-+|.-.......+.+...+..-+|||||++++.+....+ .+.+.+..++.... +..
T Consensus 21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 80 (269)
T d2hqsa1 21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 80 (269)
T ss_dssp EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EEC
T ss_pred EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eee
Confidence 67666544455555667888999999999997554544443 45555655554332 445
Q ss_pred CCCCEEEEEEcCCCCEEEEEECC-CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-- 481 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-- 481 (1096)
+........|||+|+.++..... +...++.......... .............+++++.. .+++...++...+|.
T Consensus 81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--ECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEE
T ss_pred eecccccceecCCCCeeeEeeecCCccceeecccccccce--eeeecccccccccccccccc-ceecccccCCceEeeee
Confidence 77888999999999999876543 3333333322221111 23345555667778888875 455555666555554
Q ss_pred cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
..+.....+..+........|+| ++..++.. ...|...+|..+...................|||||+.|+..+. .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~-~ 234 (269)
T d2hqsa1 158 INGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS-Q 234 (269)
T ss_dssp TTSSCCEECCCSSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEE-E
T ss_pred cccccceeeeccccccccccccc--ccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEc-C
Confidence 55555555555666666777766 55666555 44556666666555555555555666788899999999987664 2
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
.+...|+++++..+...+ +..... .+...+|+|
T Consensus 235 ~~~~~l~~~~~dg~~~~~-lt~~~g-~~~~p~WSP 267 (269)
T d2hqsa1 235 GMGSVLNLVSTDGRFKAR-LPATDG-QVKFPAWSP 267 (269)
T ss_dssp TTEEEEEEEETTSCCEEE-CCCSSS-EEEEEEECC
T ss_pred CCCcEEEEEECCCCCEEE-EeCCCC-cEEeEEeCC
Confidence 346689999998776544 444333 566778887
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.07 E-value=4.1e-08 Score=103.00 Aligned_cols=242 Identities=10% Similarity=0.046 Sum_probs=159.2
Q ss_pred CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 333 ~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
-+.+++.++.-...+..++++|||+ ++++...+++|..|+... +... +......+.++
T Consensus 16 ~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g-~~~~--------------------~~~~~~~~~gl 73 (302)
T d2p4oa1 16 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDG-NQQI--------------------HATVEGKVSGL 73 (302)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTC-CEEE--------------------EEECSSEEEEE
T ss_pred CcccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCC-CEEE--------------------EEcCCCCcceE
Confidence 3455666676555799999999999 889988899998888653 3221 23355689999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 491 (1096)
+|++||+++++...++.+..|+......................+++.++++ ++++.+.++.+..+| ..+.......
T Consensus 74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~ 151 (302)
T d2p4oa1 74 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLE 151 (302)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEec
Confidence 9999999999988888888888765432221111123456689999999998 788888888888888 4443221111
Q ss_pred ----------CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee--EEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 492 ----------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 492 ----------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
........+.+ .+ +.++++.+..+.|..++........ ...........+++.++|++.++...
T Consensus 152 ~~~~~~~~~~~~~~~~ngi~~--~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~- 227 (302)
T d2p4oa1 152 HPMLARSNSESVFPAANGLKR--FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI- 227 (302)
T ss_dssp CGGGSCSSTTCCSCSEEEEEE--ET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT-
T ss_pred CCccceeeccCcccccccccc--cC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC-
Confidence 11123445554 32 3566777788899888876544322 11122334567999999997776654
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcC-ccceEEEEE---eCCCCEEEEEEcC
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQF---DTTQNHFLAVGED 606 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~---~~~~~~l~~~~~d 606 (1096)
++.|..++... +......... -.....++| ++|++.|++++..
T Consensus 228 ---~~~V~~i~p~G-~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 228 ---YNSVVRIAPDR-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ---TCCEEEECTTC-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ---CCcEEEECCCC-CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 77888887654 3333332221 124677999 5677877776543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.07 E-value=1.9e-08 Score=108.58 Aligned_cols=290 Identities=11% Similarity=0.032 Sum_probs=152.0
Q ss_pred EEEeCCCCeee--EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecCCCCCCccEEEEeCCCCE
Q 001343 567 VEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1096)
Q Consensus 567 ~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~ 643 (1096)
..+|.++++.. ..........+..++++++++.++++.. +.+..|.+.. +.......... ......+.++++++.
T Consensus 19 ~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~-~~~p~~v~~~~~~~~ 96 (365)
T d1jofa_ 19 VQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI-GGHPRANDADTNTRA 96 (365)
T ss_dssp EEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC-CSSGGGGCTTSCCEE
T ss_pred EEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC-CCCcEEEEECCCCCE
Confidence 34555665542 2222222224556999999999988765 5677777764 33332222111 125677888999875
Q ss_pred EEEEE---CCCcEEEEEcCCCccccccccCCCcc-----------cccCcceeEEeecCCCeEEecCCCCceeEeccCCC
Q 001343 644 LAVTT---ADNGFKILANAIGLRSLRAVENPPFE-----------ALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1096)
Q Consensus 644 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~ 709 (1096)
++... ..+.+..+.+.........+...... .....+.++.|+|+|++++...
T Consensus 97 ~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d------------- 163 (365)
T d1jofa_ 97 IFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD------------- 163 (365)
T ss_dssp EEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-------------
T ss_pred EEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee-------------
Confidence 44332 24556555443221111000000000 0011234566666666552221
Q ss_pred cCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceE---EEEcCCCCCCcccEEEEEEecCCceEEEeec-C
Q 001343 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCR---LVTMPESTDTSSKVVRLLYTNSAVGLLALGS-N 785 (1096)
Q Consensus 710 ~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d 785 (1096)
.....|.+|+... .+... ...... .....+.++|+|+++++.+... +
T Consensus 164 -----------------------~g~d~v~~~~~~~---~g~~~~~~~~~~~~---~g~gPr~i~f~pdg~~~yv~~e~~ 214 (365)
T d1jofa_ 164 -----------------------LTANKLWTHRKLA---SGEVELVGSVDAPD---PGDHPRWVAMHPTGNYLYALMEAG 214 (365)
T ss_dssp -----------------------TTTTEEEEEEECT---TSCEEEEEEEECSS---TTCCEEEEEECTTSSEEEEEETTT
T ss_pred -----------------------CCCCEEEEEEccC---CCceeeccceeecC---CCCceEEEEECCCCceEEEeccCC
Confidence 1124556665442 12211 122222 4567899999999998866665 7
Q ss_pred CeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--C-----CeEEEEE
Q 001343 786 GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--G-----GKISLFN 858 (1096)
Q Consensus 786 g~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--d-----g~v~iwd 858 (1096)
++|.+|+++...... ......+.++............ ........+.++|||++|+++. + +.|..|+
T Consensus 215 ~~V~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~ 288 (365)
T d1jofa_ 215 NRICEYVIDPATHMP---VYTHHSFPLIPPGIPDRDPETG---KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFK 288 (365)
T ss_dssp TEEEEEEECTTTCCE---EEEEEEEESSCTTCCCBCTTTS---SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEE
T ss_pred CEEEEEEecCCCceE---EEEeeeeccccccccccccccc---cccCCccceEECCCCCEEEEEcccCCCccceEEEEEE
Confidence 899999986532210 1111111111111111111011 1344566789999999998875 2 2377777
Q ss_pred cccc-eEE-----EeecCCCCCeeEEEEecCCCcEEEEe-eCCCeEEEEeeccce
Q 001343 859 MMTF-KVM-----TTFMSPPPASTFLAFHPQDNNIIAIG-TEDSTIHIYNVRVDE 906 (1096)
Q Consensus 859 ~~~~-~~~-----~~~~~h~~~i~~l~~s~~d~~~l~s~-~~dg~i~iw~~~~~~ 906 (1096)
+... ... ...........+++|+|.+|++|+++ ..++.|.+|+++...
T Consensus 289 ~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 289 LRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp ECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred ecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 6432 221 11122334567799997567866655 678999999987654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=2.4e-08 Score=111.22 Aligned_cols=111 Identities=11% Similarity=0.023 Sum_probs=78.1
Q ss_pred EEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc--cceEEEEEeCCCCEEEEEE---------cCCeEEEEe
Q 001343 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK--KSNGVVQFDTTQNHFLAVG---------EDSQIKFWD 613 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~---------~dg~i~iwd 613 (1096)
.|.+++.++... .++.|.+||+.+++....+....- ..+....++||+++++... ..+.+.++|
T Consensus 23 ~W~~~~~~~~~~-----~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYRE-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCCC-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEEe-----CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 467777765432 267899999998876555544321 2455678999999988764 357889999
Q ss_pred CCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 614 MDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.++..............+....|||||+.+|... ++.|.+.+..++
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~ 144 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGK 144 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSS
T ss_pred ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCC
Confidence 99887655443333334567789999999998876 457777777655
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=1.1e-07 Score=97.82 Aligned_cols=223 Identities=11% Similarity=0.118 Sum_probs=135.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCC---eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEE-EeCCCcE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKH---LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLI 477 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s-~s~d~~i 477 (1096)
+..+...+..-+|||||++||...... .+.+.+..++... .+..+.+......|+|+|+. ++. ...++..
T Consensus 34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~--i~~~~~~~~~~ 107 (269)
T d2hqsa1 34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSK--LAFALSKTGSL 107 (269)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSE--EEEEECTTSSC
T ss_pred EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCe--eeEeeecCCcc
Confidence 344567788999999999999775543 4666676665433 25567888999999999995 443 3334333
Q ss_pred EEEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEE--EcCCCCeeeEEeCCCCcEEEEEEcCCCCEE
Q 001343 478 KVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 478 ~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
.++. ....................+.+.. ...+++...+|...+| ++..... ..............++|+++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~ 185 (269)
T d2hqsa1 108 NLYVMDLASGQIRQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM 185 (269)
T ss_dssp EEEEEETTTCCEEECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEE
T ss_pred ceeecccccccceeeeecccccccccccccc-ccceecccccCCceEeeeecccccc-eeeeccccccccccccccccee
Confidence 3333 2222233333333333344444432 2345555556655555 4443322 2334445567888999999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEc---CCeEEEEeCCCCeEEEEeecCCCCC
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
+.... ..+...+.+.+...+.... . .... ......|+|||+.|+..+. ...|++++++.+.... +.....
T Consensus 186 ~~~~~-~~~~~~i~~~~~~~~~~~~-~-~~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~g-- 258 (269)
T d2hqsa1 186 VMVSS-NGGQQHIAKQDLATGGVQV-L-SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPATDG-- 258 (269)
T ss_dssp EEEEE-CSSCEEEEEEETTTCCEEE-C-CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCCSSS--
T ss_pred EEEee-cCCceeeeEeecccccceE-e-ecCc-cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeCCCC--
Confidence 98765 2234466666766655422 2 2222 4556789999999876653 3478999998776544 333322
Q ss_pred CccEEEEeC
Q 001343 631 NLPRLRFSK 639 (1096)
Q Consensus 631 ~v~~~~~s~ 639 (1096)
.+...+|+|
T Consensus 259 ~~~~p~WSP 267 (269)
T d2hqsa1 259 QVKFPAWSP 267 (269)
T ss_dssp EEEEEEECC
T ss_pred cEEeEEeCC
Confidence 567788988
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.92 E-value=1.3e-07 Score=96.60 Aligned_cols=240 Identities=7% Similarity=-0.023 Sum_probs=151.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
+...-..|+++++|..+++..+..+.|..++..+...... ... -......++++++|++++
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~------------------~~~-~~~~p~gvav~~~g~i~v 72 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------PFN-GLYQPQGLAVDGAGTVYV 72 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC------------------CCC-SCCSCCCEEECTTCCEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe------------------ccC-CccCceEEEEcCCCCEEE
Confidence 4556789999999994444445567788777654433211 011 122456789999999887
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~ 501 (1096)
+....+.+++++-.++.... .. .......++++.++++ ++++-..+..+..++..+.....+. .-.....+++
T Consensus 73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence 77666667666544443322 11 2235678999999998 6776666777888874444333322 2233456788
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
+.+ ++.++++...++.|..++.+.................+++.++|+++++... .+.|..++..... ...+.
T Consensus 147 ~~~--~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~-~~~~~ 219 (260)
T d1rwia_ 147 VDN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTT-STVLP 219 (260)
T ss_dssp ECT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSC-CEECC
T ss_pred ecC--CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCe-EEEEc
Confidence 865 5678888888889999987765444333344456789999999987777654 7788888765443 22222
Q ss_pred CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
...-.....++++++|+.+++-..+++|+.++.
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 222124567999999887776666677766554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.91 E-value=6.2e-07 Score=93.85 Aligned_cols=248 Identities=13% Similarity=0.073 Sum_probs=158.9
Q ss_pred CceEEEEEcCCCCcEEEEEeC-------CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 345 STVISMDFHPSHQTLLLVGSS-------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
......+|.|+|+ ++++... +|.|..||..++....... .......+.-..++|+++
T Consensus 18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~---------------~~~~~~~g~P~Gl~~~~d 81 (314)
T d1pjxa_ 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------PEVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------CEETTEECCEEEEEECSS
T ss_pred CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEEC---------------CccccCCCcceeEEEeCC
Confidence 3467789999999 5554322 4678999988876542100 001111234678999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccc-cCEEEEEEecCCCcEEEEEEeC---------------CCcEEEEE
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD---------------DKLIKVWE 481 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s~---------------d~~i~iwd 481 (1096)
++.|+++...+.|...+.+++..........+.. ...+.+++.++|. +.++-.. +|.|..++
T Consensus 82 g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~ 159 (314)
T d1pjxa_ 82 ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEe
Confidence 9988888877788888887653221111111111 1357899999998 6665422 23455555
Q ss_pred cCCceEEEeeCCCCCeEEEEeeecCCC---cEEEEEECCCeEEEEEcCCCCeeeE------EeC-CCCcEEEEEEcCCCC
Q 001343 482 LSGRKLFNFEGHEAPVYSICPHHKENI---QFIFSTAIDGKIKAWLYDTMGSRVD------YDA-PGHWCTTMLYSADGS 551 (1096)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~------~~~-~~~~i~~l~~s~~~~ 551 (1096)
.+++...... .-..-+.++|++.+++ .++++-+..+.|..|++........ +.. .......+++.++|+
T Consensus 160 ~dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 160 TDGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp TTSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred ecCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence 5565443332 2334578888886543 2445556788899998765443321 111 122467899999999
Q ss_pred EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE-EEEEcCCeEEEEeCCC
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~ 616 (1096)
..++... .+.|.+||.+.++.+..+..... ...+++|.|+++.| ++.+.+|.|+.+++..
T Consensus 239 lyVa~~~----~g~I~~~dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 239 LLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcC----CCEEEEEeCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 8776654 78999999998888777766544 67789999998755 4555778888888653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.87 E-value=1.3e-06 Score=90.05 Aligned_cols=243 Identities=10% Similarity=0.082 Sum_probs=165.0
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceee---cccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l---~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 484 (1096)
....|+++++|+.+++-..++.|++||.+ |+.+..+... .+.......+++.++....+++..+.++.|..++..+
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 46899999999988877778899999966 4444322111 1222345667777665532333445566888888888
Q ss_pred ceEEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCCcEEEEEEcCCCCEEEEEeeccC
Q 001343 485 RKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSRLFSCGTSKD 561 (1096)
Q Consensus 485 ~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~~~~ 561 (1096)
.....+.. .......+++.+ ++.++++....+.+.+++.+ ++....+. .+......+++.++++.+++...
T Consensus 103 ~~~~~~~~~~~~~p~~~avd~--~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~--- 176 (279)
T d1q7fa_ 103 QFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR--- 176 (279)
T ss_dssp CEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG---
T ss_pred cceeecCCCcccccceecccc--CCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecc---
Confidence 88777643 334566777754 66777777777888888754 33333332 33447888999999987777654
Q ss_pred CCCeEEEEeCCCCeeeEEEcCc-CccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 562 GDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
.+.|++||.. ++.+.++... .......++++++|+.+++-. .++.|.+|+. +|+.+..+...........+++.|
T Consensus 177 -~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 177 -AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp -GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred -ccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC
Confidence 7899999964 5666666422 112466799999999776654 3457999985 677777776544444678999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001343 640 EGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 640 ~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+|.+++ +..++.|++|.....
T Consensus 254 dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 254 DGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTEEEE-EETTTEEEEEECSCC
T ss_pred CCcEEE-EeCCCeEEEEEeeee
Confidence 997554 567889999987543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.82 E-value=2.5e-07 Score=94.37 Aligned_cols=237 Identities=9% Similarity=-0.008 Sum_probs=149.5
Q ss_pred CCEEEEEEcCCCCEEEEE-ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 407 ISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
..-..|+++++|+..++. +..+.|..++......... ...+ ......+++++++. ++++....+.+++++ .++
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~--~~~~-~~~p~gvav~~~g~--i~v~d~~~~~i~~~~~~~~ 88 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL--PFNG-LYQPQGLAVDGAGT--VYVTDFNNRVVTLAAGSNN 88 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC--CCCS-CCSCCCEEECTTCC--EEEEETTTEEEEECTTCSC
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe--ccCC-ccCceEEEEcCCCC--EEEeeeeeceeeeeeeccc
Confidence 456899999999966654 4557777776654332211 1222 23457889999998 777777777777666 444
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCC
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~ 564 (1096)
..+....+ .....++++.+ ++.++++-..+..+..++...................++++++++.+++... .+
T Consensus 89 ~~~~~~~~-~~~p~~iavd~--~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~----~~ 161 (260)
T d1rwia_ 89 QTVLPFDG-LNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 161 (260)
T ss_dssp CEECCCCS-CCSEEEEEECT--TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGG----GT
T ss_pred eeeeeeee-eeecccccccc--cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccc----cc
Confidence 44433332 34567888855 5567776666677777765543332222222235678999999987776654 77
Q ss_pred eEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEE
Q 001343 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1096)
.|..++.............-. ....++++++|+++++....+.|..++...... ..+. .........|+++++|+++
T Consensus 162 ~i~~~d~~~~~~~~~~~~~~~-~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~-~~~~~~P~~i~~d~~g~l~ 238 (260)
T d1rwia_ 162 RVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLP-FTGLNTPLAVAVDSDRTVY 238 (260)
T ss_dssp EEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECC-CCSCCCEEEEEECTTCCEE
T ss_pred cccccccccceeeeeeccccC-CCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEc-cCCCCCeEEEEEeCCCCEE
Confidence 899999775443322222222 456799999998888777888898888755432 2222 1222356899999999888
Q ss_pred EEEECCCcEEEEEc
Q 001343 645 AVTTADNGFKILAN 658 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~ 658 (1096)
++-..++.|+.++.
T Consensus 239 vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 239 VADRGNDRVVKLTS 252 (260)
T ss_dssp EEEGGGTEEEEECC
T ss_pred EEECCCCEEEEEeC
Confidence 77666776665544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.82 E-value=2.1e-06 Score=88.33 Aligned_cols=195 Identities=12% Similarity=0.130 Sum_probs=129.7
Q ss_pred CEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC------CCCeEEEEeeecCCCcEEEE-EECCCeEEEEEc
Q 001343 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH------EAPVYSICPHHKENIQFIFS-TAIDGKIKAWLY 525 (1096)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~ 525 (1096)
....++++++++ ++++-..++.|++||.+|+.+..+... ......+++.... +..+++ .+.++.|..++.
T Consensus 24 ~P~gvavd~dg~--i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 24 EPSGVAVNAQND--IIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp CEEEEEECTTCC--EEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECGGGCEEEEECT
T ss_pred CccEEEEcCCCC--EEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccc-cccceeccCCccccccccc
Confidence 468999999998 788877889999999889888776321 1123445544332 334443 344567777764
Q ss_pred CCCCeeeEEeC-CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC-ccceEEEEEeCCCCEEEEE
Q 001343 526 DTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAV 603 (1096)
Q Consensus 526 ~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~ 603 (1096)
. +.....+.. .......+++.++|..+++... ...+.+++. +++.+..+.... ......+++.++++.+++.
T Consensus 101 ~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~----~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 101 Y-GQFVRKFGATILQHPRGVTVDNKGRIIVVECK----VMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp T-SCEEEEECTTTCSCEEEEEECTTSCEEEEETT----TTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred c-ccceeecCCCcccccceeccccCCcEEEEeec----cceeeEecc-CCceeecccccccccccceeeeccceeEEeee
Confidence 3 333334432 3346789999999988777653 677888875 456666653222 2256678899998888888
Q ss_pred EcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC-CCcEEEEE
Q 001343 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILA 657 (1096)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd 657 (1096)
...+.|++|+. +++.+..+...+.......+++.++|+++++-.. ++.|.+|+
T Consensus 175 ~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~ 228 (279)
T d1q7fa_ 175 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 228 (279)
T ss_dssp GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred ccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence 88899999997 4566666654444445678899998887766443 33466665
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=9.9e-07 Score=97.81 Aligned_cols=138 Identities=5% Similarity=-0.021 Sum_probs=91.6
Q ss_pred EEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC---CCCeEEEEeeecCCCcEEEEEE---------CCCeEEEE
Q 001343 457 LAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTA---------IDGKIKAW 523 (1096)
Q Consensus 457 l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~---------~dg~i~iw 523 (1096)
..|.+++. ++. -..+|.|.+|| .+++....+... ...+....++| |+++++... ..+.+.++
T Consensus 22 ~~W~~~~~--~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp--D~~~vl~~~~~~~~~r~s~~~~~~i~ 96 (465)
T d1xfda1 22 AKWISDTE--FIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYYVLS 96 (465)
T ss_dssp CCBSSSSC--BCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred CEEeCCCc--EEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECC--CCCeEEEEEcccceeEeeccccEEEE
Confidence 35778877 443 45678999999 666553333322 23455666655 677777653 35788899
Q ss_pred EcCCCCeeeEEe--CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccc--------------
Q 001343 524 LYDTMGSRVDYD--APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS-------------- 587 (1096)
Q Consensus 524 d~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-------------- 587 (1096)
|+.++....... .....+....|||||+.++... ++.|++.+..++..++.........
T Consensus 97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-----~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~ 171 (465)
T d1xfda1 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-----ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (465)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-----TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EccCCceeeccCccCCccccceeeeccCCceEEEEe-----cceEEEEecCCCceEEEecccCcceeeccccchhhhhhh
Confidence 998776543322 2233566788999999999876 7789999988777665543222111
Q ss_pred ---eEEEEEeCCCCEEEEEE
Q 001343 588 ---NGVVQFDTTQNHFLAVG 604 (1096)
Q Consensus 588 ---i~~~~~~~~~~~l~~~~ 604 (1096)
-..+.|+|||++|+...
T Consensus 172 ~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 172 LKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp SSSSEEEEECTTSSEEEEEE
T ss_pred ccccceEEECCCCCeEEEEE
Confidence 24577999999998865
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.70 E-value=4.5e-06 Score=87.14 Aligned_cols=243 Identities=11% Similarity=0.048 Sum_probs=151.2
Q ss_pred CEEEEEEcCCCCEEEEEEC-------CCeEEEEEccCCCccccce-eecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 408 SVSRVAWSPDGNYVGVAFT-------KHLIQLYSYAGSNDLRQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~-~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
....++|.|+|+.+++... +|+|..||..++....... ......+.-..++|.+++. .++++...+.|..
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~--~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADMRLGLLV 96 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEETTTEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC--EEEEEECCCeEEE
Confidence 4567899999998876432 4678889988765332110 1112223467899999998 6777777777888
Q ss_pred EEcCCceEEEeeCC-CC----CeEEEEeeecCCCcEEEEEEC---------------CCeEEEEEcCCCCeeeEEeCCCC
Q 001343 480 WELSGRKLFNFEGH-EA----PVYSICPHHKENIQFIFSTAI---------------DGKIKAWLYDTMGSRVDYDAPGH 539 (1096)
Q Consensus 480 wd~~~~~~~~~~~~-~~----~v~~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~ 539 (1096)
.+.++.....+... .+ ..+.+++.+ +|.+.++-.. +|.| |.+............-.
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~--~G~lyvtd~~~~~~~~~~~~~~~~~~G~v--~~~~~dg~~~~~~~~~~ 172 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSI--YCFTTDGQMIQVDTAFQ 172 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEE--EEECTTSCEEEEEEEES
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECC--CCCEEEecCccCcccccccceeccCCceE--EEEeecCceeEeeCCcc
Confidence 88655544333221 11 246677755 5666665322 2333 33332222222222223
Q ss_pred cEEEEEEcCCCC----EEEEEeeccCCCCeEEEEeCCCCeee------EEEcCcCccceEEEEEeCCCCEEEEEEcCCeE
Q 001343 540 WCTTMLYSADGS----RLFSCGTSKDGDSFLVEWNESEGTIK------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1096)
Q Consensus 540 ~i~~l~~s~~~~----~l~~~~~~~~~~~~i~iwd~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 609 (1096)
..+.++|++++. .|+++.. ..+.|+.|++.....+ ..+.+........+++..+|+..++....+.|
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~---~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I 249 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred eeeeeEECCCCCcceeEEEEEee---cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE
Confidence 356788988765 4554432 2778888886533222 12222222234568999999988888888999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEE-EEEECCCcEEEEEcCCC
Q 001343 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIG 661 (1096)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~ 661 (1096)
.+||.+.++.+..+..... .+.+++|.|+++.| ++.+.++.|..+++...
T Consensus 250 ~~~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 250 EVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEeCCCCEEEEEEECCCC--CEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 9999988887777765543 67899999999755 55556788888776543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.69 E-value=9.1e-07 Score=92.39 Aligned_cols=226 Identities=15% Similarity=0.098 Sum_probs=149.3
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-c
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-R 485 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~ 485 (1096)
.+..++++|||+++++...+++|..|+.... .. .+......+.+++|.+||+ ++++...++.+..|+ ... .
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~---~~~~~~~~~~gla~~~dG~--l~v~~~~~~~~~~~~~~~~~~ 101 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQ---IHATVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSDG 101 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EE---EEEECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTTS
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EE---EEEcCCCCcceEEEcCCCC--eEEEecCCceEEEEEeccccc
Confidence 6889999999999999988999988886643 22 2445667899999999999 788888888888887 322 2
Q ss_pred eEEEee--CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC----------CCCcEEEEEEcCCCCEE
Q 001343 486 KLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA----------PGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 486 ~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~~i~~l~~s~~~~~l 553 (1096)
....+. ......+.+++.+ ++.++++.+.++.+..++............ .......+.+. +..+
T Consensus 102 ~~~~~~~~~~~~~~n~i~~~~--~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l 177 (302)
T d2p4oa1 102 TVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFL 177 (302)
T ss_dssp CEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEE
T ss_pred ceeeccccCCccccceeEEcc--CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCce
Confidence 222222 2344577888755 667888888888888888776544332211 11134556554 4455
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeE---EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCC
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKR---TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
+.+.. ..+.|+.++........ .+... . ....++++++|+++++...++.|..++... +............
T Consensus 178 ~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~-~-~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~~~~~~ 251 (302)
T d2p4oa1 178 YVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ-T-NIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQAEQGVI 251 (302)
T ss_dssp EEEET---TTTEEEEEEBCTTSCBCCCEEEEES-C-CCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECGGGTCT
T ss_pred eeecC---CCCeEEeccccccccccccccccCC-C-CCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEecCCCCC
Confidence 55433 37788888876543221 11111 1 334589999999888887889999998754 4333333333333
Q ss_pred CccEEEE---eCCCCEEEEEECC
Q 001343 631 NLPRLRF---SKEGNLLAVTTAD 650 (1096)
Q Consensus 631 ~v~~~~~---s~~~~~l~~~~~d 650 (1096)
..++++| ++|++.|++++..
T Consensus 252 ~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 252 GSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp TEEEEEECCSTTTTTEEEEEECT
T ss_pred CceEEEEcCCCCCCCEEEEECCC
Confidence 6789999 6688888776654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.61 E-value=2.9e-05 Score=81.06 Aligned_cols=233 Identities=11% Similarity=0.045 Sum_probs=149.7
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
....+..++|.++|+ |+++-...+.|..|+..+++.... +.........+++++||++++
T Consensus 38 ~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~v 97 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFV 97 (319)
T ss_dssp SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEE
T ss_pred CCcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEE
Confidence 344567999999998 787777889999999877654321 223455688999999999887
Q ss_pred EEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC------CCcEEEEEcCCceEEEeeC
Q 001343 423 VAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEG 492 (1096)
Q Consensus 423 s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~ 492 (1096)
+...+ +.|...+..++...... .-..-......+++.++|. +.++... .+.+..++..++.+..+..
T Consensus 98 a~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~ 174 (319)
T d2dg1a1 98 CYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ 174 (319)
T ss_dssp EECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEEE
T ss_pred EecCCCccceeEEEEcCCCceeeeec-cCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecccceeEEEee
Confidence 65432 33444454443322211 1111233578899999998 5555432 1235555555655544433
Q ss_pred CCCCeEEEEeeecCCCcEE-EEEECCCeEEEEEcCCCCeeeE-------E-eCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 493 HEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVD-------Y-DAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~-------~-~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
.-...+.++|++ +++.| ++-+..+.|..|+++....... . .........+++.++|+..++... .
T Consensus 175 ~~~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~----~ 248 (319)
T d2dg1a1 175 NISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----Q 248 (319)
T ss_dssp EESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----T
T ss_pred ccceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC----C
Confidence 334467889876 55544 5556788999999875432211 1 111224678999999997776654 8
Q ss_pred CeEEEEeCCCCeeeEEEcCcCc-----cceEEEEEeCCCCEEEEEEc
Q 001343 564 SFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~ 605 (1096)
+.|.++|. .|+.+..+..... ..+.+++|.+....+++.+.
T Consensus 249 g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 249 GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 89999995 6888887764321 14667899988877776653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.51 E-value=9.2e-05 Score=77.13 Aligned_cols=231 Identities=11% Similarity=0.024 Sum_probs=145.1
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC----CcEEEEEc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWEL 482 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d----~~i~iwd~ 482 (1096)
..+..++|.++|++.++-...+.|..|+.++++... .+.........++|.+||+ ++++...+ +.+...+.
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~---~~~~~~~~p~gla~~~dG~--l~va~~~~~~~~~~i~~~~~ 114 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATE 114 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECT
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE---EEeCCCCCeeEEEECCCCC--EEEEecCCCccceeEEEEcC
Confidence 345689999999977777778999999988765443 2334556789999999998 66655432 33444454
Q ss_pred CCceEEEeeCC---CCCeEEEEeeecCCCcEEEEEEC------CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEE
Q 001343 483 SGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 483 ~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
.+..+..+..+ ....+.+.+.+ +|.+.++... .+.+..++.+... ...+...-...+.++|+++++.|
T Consensus 115 ~~~~~~~~~~~~~~~~~~nd~~~d~--~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 115 NGDNLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVL 191 (319)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEE
T ss_pred CCceeeeeccCCCcccCCcceeEEe--ccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceE
Confidence 44333333222 23466777754 6665555322 1234444433222 22222222346789999999987
Q ss_pred EEEeeccCCCCeEEEEeCCCC-eeeEEE------cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 554 FSCGTSKDGDSFLVEWNESEG-TIKRTY------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
+.+.. ..+.|+.|++... ...... ..........++++.+|+..++....+.|.+|+. .|+.+..+...
T Consensus 192 yvad~---~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P 267 (319)
T d2dg1a1 192 WVTET---TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 267 (319)
T ss_dssp EEEEG---GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred EEecc---cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCC
Confidence 66543 2678999987532 211111 1111113456899999998888888999999996 68888887654
Q ss_pred C----CCCCccEEEEeCCCCEEEEEEC
Q 001343 627 G----GLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 627 ~----~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
. +...+.+++|.+++..+++...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 268 GRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 3 2235789999998877766654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.32 E-value=4.6e-05 Score=78.03 Aligned_cols=236 Identities=10% Similarity=0.078 Sum_probs=129.4
Q ss_pred EEcCC--CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC-C
Q 001343 351 DFHPS--HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-K 427 (1096)
Q Consensus 351 ~fsp~--g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~-d 427 (1096)
..||| |++++.+ .+|.|.+.|+.+++... +..+.+.+...+|||||++||.... +
T Consensus 5 ~~sPdi~G~~v~f~--~~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFV--CCDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEE--ETTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEE--eCCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 35789 9965555 46778888999877542 5557778899999999999986542 2
Q ss_pred -----CeEEEEEccCCCccccce---eecccccCEEEEEEecCCCcEEEEEEeCC------CcEEEEEcCCceEEEeeCC
Q 001343 428 -----HLIQLYSYAGSNDLRQHS---QIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWELSGRKLFNFEGH 493 (1096)
Q Consensus 428 -----g~i~vwd~~~~~~~~~~~---~l~~h~~~v~~l~~s~d~~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~ 493 (1096)
..|.+++..+++..+... .............|+|||+ .|+..... ..+...+..+.......
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 138 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLN-- 138 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECC--
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEec--
Confidence 247777877775443110 0112233557889999999 55554321 23444453333333222
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCC-----------eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDG-----------KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
........+ +. ++..++....+. ......... .................++++ .++... ...+
T Consensus 139 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~ 212 (281)
T d1k32a2 139 LGPATHILF-AD-GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGH--RIYFIT-DIDG 212 (281)
T ss_dssp SCSCSEEEE-ET-TEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETT--EEEEEE-CTTS
T ss_pred CCccceeee-cC-CCeEEEeeccccceeeeeccCCcceeeeeccc-cceeeccCCccccceeeeecc--ccceec-cccc
Confidence 222222222 21 222333222111 111111111 112222222333444455554 333333 3345
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1096)
...|+++|+.+++..+ +..... .....|+|+|+.|+.. .++.|+++|+.+++....
T Consensus 213 ~~~l~~~d~~g~~~~~-lt~~~~--~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 213 FGQIYSTDLDGKDLRK-HTSFTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp SCEEEEEETTSCSCEE-CCCCCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred ccceEEEeCCCCceEE-eecCCC--cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 6789999988776544 333222 2224689999988764 468899999988876543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.24 E-value=4.1e-05 Score=78.41 Aligned_cols=233 Identities=12% Similarity=0.099 Sum_probs=126.4
Q ss_pred CCceeecCCCceeeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCC-----eEEEEecCCCCeeecccceeec
Q 001343 315 AEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG-----EITLWELAMRDRLVSKPFKIWD 389 (1096)
Q Consensus 315 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg-----~I~iwd~~~~~~~~~~~~~~~~ 389 (1096)
.+.|+|...++ +|-++...++..+...+...+...+|||||++++.+...++ .|.+++..+++...-..
T Consensus 12 G~~v~f~~~~d-l~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~----- 85 (281)
T d1k32a2 12 GDRIIFVCCDD-LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY----- 85 (281)
T ss_dssp TTEEEEEETTE-EEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC-----
T ss_pred CCEEEEEeCCc-EEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee-----
Confidence 56788887665 88777666776666668888999999999997555554332 47777877776543100
Q ss_pred ccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC------CeEEEEEccCCCccccceeecccccCEEEEEEecCC
Q 001343 390 MAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN 463 (1096)
Q Consensus 390 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~ 463 (1096)
...............+|+|||+.|+..... ..+...+..++.... .+.+.... .+.+++
T Consensus 86 --------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~ 150 (281)
T d1k32a2 86 --------FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP------LNLGPATH-ILFADG 150 (281)
T ss_dssp --------CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE------CCSCSCSE-EEEETT
T ss_pred --------cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE------ecCCccce-eeecCC
Confidence 000011223356788999999999876432 234555555543221 12222223 344455
Q ss_pred CcEEEEEEeCCC-----------cEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC--eEEEEEcCCCCe
Q 001343 464 KLLCVVTCGDDK-----------LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGS 530 (1096)
Q Consensus 464 ~~~~l~s~s~d~-----------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~ 530 (1096)
.. .++....+. ...++.....................+. ++ ..+.....++ .|.++|++....
T Consensus 151 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~d~~g~~~ 226 (281)
T d1k32a2 151 RR-VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV--GH-RIYFITDIDGFGQIYSTDLDGKDL 226 (281)
T ss_dssp EE-EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE--TT-EEEEEECTTSSCEEEEEETTSCSC
T ss_pred Ce-EEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeee--cc-ccceecccccccceEEEeCCCCce
Confidence 42 333322211 1122222222222222233333333332 22 2333343443 456667665554
Q ss_pred eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 531 RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 531 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
.......... ...|+|||+.|+... ++.|+++|+.+++..+.
T Consensus 227 ~~lt~~~~~~--~~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 227 RKHTSFTDYY--PRHLNTDGRRILFSK-----GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp EECCCCCSSC--EEEEEESSSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred EEeecCCCcc--cccCcCCCCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence 4322222223 346899999988754 67899999998876544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.22 E-value=0.00037 Score=71.29 Aligned_cols=234 Identities=10% Similarity=0.042 Sum_probs=140.6
Q ss_pred EEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccc
Q 001343 590 VVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (1096)
Q Consensus 590 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 668 (1096)
...|++..+.|+-.. ..+.|..||..+++.. .+.... .+.++++.++|.++++ +.+ .+.++|..++.. ..+
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~---~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~--~~l 93 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPF---MGSALAKISDSKQLIA-SDD-GLFLRDTATGVL--TLH 93 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSS---CEEEEEEEETTEEEEE-ETT-EEEEEETTTCCE--EEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECCC---CcEEEEEecCCCEEEE-EeC-ccEEeeccccee--eEE
Confidence 355776555554444 6788999999887654 333322 5788999999877765 444 588899988732 222
Q ss_pred cCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeec
Q 001343 669 ENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVD 748 (1096)
Q Consensus 669 ~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~ 748 (1096)
...........++.+.+.|+|++.++..... ...+.-.+|.+.
T Consensus 94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~---------------------------------~~~~~g~l~~~~---- 136 (295)
T d2ghsa1 94 AELESDLPGNRSNDGRMHPSGALWIGTMGRK---------------------------------AETGAGSIYHVA---- 136 (295)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETT---------------------------------CCTTCEEEEEEE----
T ss_pred eeeecCCCcccceeeEECCCCCEEEEecccc---------------------------------ccccceeEeeec----
Confidence 1111122233467788888888765442211 001223445443
Q ss_pred CCceEEEEcCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccC
Q 001343 749 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 827 (1096)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g 827 (1096)
.+....+. . .-.....++|+++++.++.+.. .+.|..|+++.......++ ........+
T Consensus 137 ~g~~~~~~--~---~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~---------------~~~~~~~~~ 196 (295)
T d2ghsa1 137 KGKVTKLF--A---DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK---------------AEVFIDSTG 196 (295)
T ss_dssp TTEEEEEE--E---EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC---------------CEEEEECTT
T ss_pred CCcEEEEe--e---ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccc---------------eEEEeccCc
Confidence 22222211 1 2334678999999987765554 6788888875432211111 001111222
Q ss_pred CCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEe
Q 001343 828 VNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (1096)
Q Consensus 828 ~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~ 891 (1096)
.......+++..+|.+.++.. .+.|..||. +|+.+..+.-....+++++|-..|.+.|++.
T Consensus 197 --~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 197 --IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp --SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred --ccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence 345567899999998776665 688999995 7899999887777899999963255555443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.16 E-value=0.00067 Score=69.29 Aligned_cols=222 Identities=14% Similarity=0.063 Sum_probs=143.5
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d 427 (1096)
.+..|++....++.+--..+.|.-||..+++... | .....+.++++.++|.++++ +.+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~---------------~~~~~~~~i~~~~dg~l~va-~~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIA-SDD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEE-ETT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------E---------------ECCCCcEEEEEecCCCEEEE-EeC
Confidence 3456776544466665567899999998876432 1 12346889999999877765 444
Q ss_pred CeEEEEEccCCCccccceeecc--cccCEEEEEEecCCCcEEEEEEeC----CCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCGD----DKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~--h~~~v~~l~~s~d~~~~~l~s~s~----d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
-|.++|..+++... +..... ....++.+.+.|+|. +.++... .+.-.+|. ..++....... -..-+.+
T Consensus 79 -gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~ 153 (295)
T d2ghsa1 79 -GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI 153 (295)
T ss_dssp -EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred -ccEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence 68899999876432 111111 223588999999998 4444332 23445666 55554443332 3345678
Q ss_pred EeeecCCCc-EEEEEECCCeEEEEEcCCCCe------ee--EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 501 CPHHKENIQ-FIFSTAIDGKIKAWLYDTMGS------RV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 501 ~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~------~~--~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
+|++. +. ++++.+..+.|..++++.... .. ...........+++..+|++.++... .+.|..||.
T Consensus 154 ~~s~d--~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp 227 (295)
T d2ghsa1 154 CFSPD--GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT 227 (295)
T ss_dssp EECTT--SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT
T ss_pred eecCC--CceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC
Confidence 88664 44 455666788899998753221 11 12233446889999999987776654 778999995
Q ss_pred CCCeeeEEEcCcCccceEEEEEe-CCCCEEEEEE
Q 001343 572 SEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 604 (1096)
+|+.+..+..... .+++++|. ++.+.|++.+
T Consensus 228 -~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 228 -DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp -TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred -CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEEE
Confidence 6888888877654 67888896 5666665543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.68 E-value=0.025 Score=54.78 Aligned_cols=231 Identities=13% Similarity=0.149 Sum_probs=145.3
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCC
Q 001343 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg 428 (1096)
+.-.+|..+ ++|.-+ ..++.|+|+++.+.+..+. ....|..=.|-.+ +.|+..+. .
T Consensus 67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~-~~L~lVT~-t 122 (327)
T d1utca2 67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISL-NTVALVTD-N 122 (327)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEESSS-SEEEEECS-S
T ss_pred hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEE--------------------cCCCcEEEEecCC-CEEEEEcC-C
Confidence 455678887 677654 5689999999988776422 2335666677644 45555543 5
Q ss_pred eEEEEEccCCCccccceeecccc----cCEEEEEEecCCCcEEEEEE--e----CCCcEEEEEcCCceEEEeeCCCCCeE
Q 001343 429 LIQLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTC--G----DDKLIKVWELSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h~----~~v~~l~~s~d~~~~~l~s~--s----~d~~i~iwd~~~~~~~~~~~~~~~v~ 498 (1096)
.|+-|++++...... .+..|. ..|..-..+++.+. ++++| . -.|.+.+|..+.+.-+.+.||.+...
T Consensus 123 aVYHW~~~g~s~P~k--~fdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~ 199 (327)
T d1utca2 123 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 199 (327)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEE
T ss_pred ceEEEcccCCCCchh--hhhhcccccCceEEEEEECCCCCE-EEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeE
Confidence 899999965433222 333333 46777788888886 33333 1 23678899977777788888876555
Q ss_pred EEEeeecCCC-cEEEEE---ECCCeEEEEEcCCCC---ee-----eEEe----CCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 499 SICPHHKENI-QFIFST---AIDGKIKAWLYDTMG---SR-----VDYD----APGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 499 ~~~~~~~~~~-~~l~s~---~~dg~i~iwd~~~~~---~~-----~~~~----~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+.+...... ..++.+ ...+.+++.++.... .. ..+. ..++-..++.+|+.-..+...+.
T Consensus 200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK---- 275 (327)
T d1utca2 200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 275 (327)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec----
Confidence 5543221111 223222 223688888886532 11 1111 12335678888888888888876
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEE
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 611 (1096)
.|.+++||++++.++..-+-..+ .+...+-..+..-+++...+|.|.-
T Consensus 276 ~G~i~lyDleTgt~i~~nRIs~~-~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 276 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTSEEEE
T ss_pred CcEEEEEEcccccEEEEeecCCC-ceEEeccCCCCceEEEECCCCeEEE
Confidence 99999999999999877665544 5554555555556666666776643
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.67 E-value=0.033 Score=54.81 Aligned_cols=225 Identities=11% Similarity=0.019 Sum_probs=140.4
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
..+...+..|+|.+..+.|.... .++.|+..+++++.... .+..-...+.++++..-+.. +.++-...+.|.+.+
T Consensus 32 ~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~ 107 (263)
T d1npea_ 32 HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAK 107 (263)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEE
T ss_pred ccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEe
Confidence 33455688899998888777664 45788888887654332 22233457899999876663 344556678999999
Q ss_pred cCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCe--EEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 482 LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 482 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
.+|.....+. ........+++.|.. +.++.+-...+. |.--+++...........-.....+++.+.++.|..+..
T Consensus 108 ~dg~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~ 186 (263)
T d1npea_ 108 MDGTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (263)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred cCCceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC
Confidence 6555444443 333567889987753 333334322233 443455544333333333456789999988888877643
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1096)
+.+.|...++........+.+... + ..+++. +..|+... ..+.|...|..+++.+..+..... .....++.
T Consensus 187 ---~~~~I~~~~~~g~~~~~v~~~~~~-P-~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v 258 (263)
T d1npea_ 187 ---GTHRAECLNPAQPGRRKVLEGLQY-P-FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITI 258 (263)
T ss_dssp ---TTTEEEEEETTEEEEEEEEECCCS-E-EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEE
T ss_pred ---CCCEEEEEECCCCCeEEEECCCCC-c-EEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEE
Confidence 367899999876655545554332 3 356664 45555554 678899999998888776643332 24556666
Q ss_pred eCC
Q 001343 638 SKE 640 (1096)
Q Consensus 638 s~~ 640 (1096)
.++
T Consensus 259 ~~~ 261 (263)
T d1npea_ 259 ALS 261 (263)
T ss_dssp ECS
T ss_pred eCC
Confidence 543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.49 E-value=0.013 Score=60.01 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=74.6
Q ss_pred EEEEcC---CCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEe--CCCCEEEEEEcC-----------
Q 001343 543 TMLYSA---DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD--TTQNHFLAVGED----------- 606 (1096)
Q Consensus 543 ~l~~s~---~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d----------- 606 (1096)
.+.+.. ||+++++... .+..|.+.|+.+.+..+.+.......+..++.. |+-.+++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDk---an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l 165 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM 165 (459)
T ss_dssp EEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred cccccCCccceeEEEEEcC---CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccc
Confidence 455543 7899998764 488999999999998876665554456656554 455677776653
Q ss_pred -------CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 607 -------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 607 -------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
+.+.++|..+.+....+.... ....+.++++|+++++.+.+
T Consensus 166 ~d~~~y~~~~t~ID~~tm~V~~QV~V~g---~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 166 EDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp TCGG-EEEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESC
T ss_pred cchhhcceEEEEEecCCceEEEEeeeCC---ChhccccCCCCCEEEEEecc
Confidence 236788999988887777654 46789999999999988743
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.064 Score=52.83 Aligned_cols=231 Identities=9% Similarity=-0.003 Sum_probs=140.6
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc-----eEEEeeCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-----KLFNFEGHE 494 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~~ 494 (1096)
+|+.+.. ..|+-.++++.+... +......+.+++|.+..+. +..+-..++.|.-.+..+. ....+....
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~----~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCCccee----eeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 3444433 468888887754322 3335567889999988774 3334345566665553321 112222223
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
..+.++++.+.. +.+.++-...+.|.+.+++.................+++.|...+++..... ..+.|.-.++...
T Consensus 77 ~~p~glAvD~~~-~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs 153 (266)
T d1ijqa1 77 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (266)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceEEEeecc-ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC--CCcceeEeccCCC
Confidence 446678876543 3455555667899999998776666666666678999999977777765421 2456777777554
Q ss_pred eeeEEEcCcCccceEEEEEeCCCCEEEEE-EcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
........ .-.....+++++.++.|+.+ ...+.|...++....................+++. ++.+..+-..++.|
T Consensus 154 ~~~~l~~~-~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I 231 (266)
T d1ijqa1 154 DIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (266)
T ss_dssp CEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred ceeccccc-ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeE
Confidence 44333332 22256779999888777766 45678999999766554444444333345567776 33444444467788
Q ss_pred EEEEcCCC
Q 001343 654 KILANAIG 661 (1096)
Q Consensus 654 ~iwd~~~~ 661 (1096)
...+..++
T Consensus 232 ~~~~~~~g 239 (266)
T d1ijqa1 232 FSANRLTG 239 (266)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 88887776
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.38 E-value=0.11 Score=57.59 Aligned_cols=190 Identities=12% Similarity=0.017 Sum_probs=112.8
Q ss_pred EEEEe-CCCcEEEEE-c-CCceEEEeeCCCC----------Ce-EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE
Q 001343 468 VVTCG-DDKLIKVWE-L-SGRKLFNFEGHEA----------PV-YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD 533 (1096)
Q Consensus 468 l~s~s-~d~~i~iwd-~-~~~~~~~~~~~~~----------~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 533 (1096)
+..++ .++.|...| . +|+.+.++..... .+ ..+++. +..++.++.||.+...|.++++....
T Consensus 65 vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG~~~w~ 140 (571)
T d2ad6a1 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhhhhhcc
Confidence 44444 367777778 4 5888877642110 00 123332 24688889999999999999988776
Q ss_pred EeCCCC----cEEEEEEcCCCCEEEEEeec--cCCCCeEEEEeCCCCeeeEEEcCcCc----------------------
Q 001343 534 YDAPGH----WCTTMLYSADGSRLFSCGTS--KDGDSFLVEWNESEGTIKRTYAGFRK---------------------- 585 (1096)
Q Consensus 534 ~~~~~~----~i~~l~~s~~~~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~---------------------- 585 (1096)
...... .+++--.-.++. ++.+... ....+.|+-+|..+|+.+-++.....
T Consensus 141 ~~~~~~~~~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (571)
T d2ad6a1 141 VEVCDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL 219 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred ccccccccccceeecCeEeCCe-EEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccc
Confidence 543211 111111112333 3333321 12367899999999999887653210
Q ss_pred ---------------cceEEEEEeCCCCEEEEEEc----------------CCeEEEEeCCCCeEEEEeecCCCC-----
Q 001343 586 ---------------KSNGVVQFDTTQNHFLAVGE----------------DSQIKFWDMDNVNILTSTDAEGGL----- 629 (1096)
Q Consensus 586 ---------------~~i~~~~~~~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~----- 629 (1096)
..-...++++....++.+.. ...+.-.|.++|+.+..++...+.
T Consensus 220 ~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D 299 (571)
T d2ad6a1 220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA 299 (571)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred cccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccc
Confidence 01123566777777766543 356888899999999888754331
Q ss_pred --CCccEEEEeCCCC---EEEEEECCCcEEEEEcCCCc
Q 001343 630 --PNLPRLRFSKEGN---LLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 630 --~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~ 662 (1096)
..........+++ .++.++.+|.+.++|..+++
T Consensus 300 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~ 337 (571)
T d2ad6a1 300 GVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence 0111122223443 56778889999999999984
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.35 E-value=0.067 Score=59.39 Aligned_cols=258 Identities=12% Similarity=0.061 Sum_probs=142.9
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccc-cCEEEEEEecCCCcEEEEEEe------CCCcEEEEE-cCCceEEE
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s------~d~~i~iwd-~~~~~~~~ 489 (1096)
+..|+.++.|+.+.-.|.++|+..........+. ..++.--.-.++. ++.+. .+|.|+-+| .+|+.+..
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~ 191 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT---VLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCe---EEEeeccccccccCcEEEEECCCCcEEEE
Confidence 3467778889999989999998654322111111 1222111222343 44444 367899999 99999877
Q ss_pred eeCCC-------------------------------------CCeE-EEEeeecCCCcEEEEEEC---------------
Q 001343 490 FEGHE-------------------------------------APVY-SICPHHKENIQFIFSTAI--------------- 516 (1096)
Q Consensus 490 ~~~~~-------------------------------------~~v~-~~~~~~~~~~~~l~s~~~--------------- 516 (1096)
+.... ..++ ..++.+ +...++.+..
T Consensus 192 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~--~~g~~y~~tg~~~p~~~~~r~g~n~ 269 (571)
T d2ad6a1 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP--KLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch--hcCeeeeecccccCccccccccccc
Confidence 54221 1121 122322 2334444332
Q ss_pred -CCeEEEEEcCCCCeeeEEeCCCC---------cEEEEEEcCCCCE---EEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 517 -DGKIKAWLYDTMGSRVDYDAPGH---------WCTTMLYSADGSR---LFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 517 -dg~i~iwd~~~~~~~~~~~~~~~---------~i~~l~~s~~~~~---l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
...+...|.++++....+....+ ......+..+++. ++..+. ++.++++|..+|+.+......
T Consensus 270 ~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k----~G~l~vlDr~tG~~i~~~~~~ 345 (571)
T d2ad6a1 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDR----NGILYTLNRENGNLIVAEKVD 345 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECT----TSEEEEEETTTCCEEEEEESS
T ss_pred cccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccc----cceEEEEecCCCcEeeeeccC
Confidence 24567778888888876664332 1122222234432 333433 899999999999877543211
Q ss_pred Cc--------------------------------------cceEEEEEeCCCCEEEEEEcC-------------------
Q 001343 584 RK--------------------------------------KSNGVVQFDTTQNHFLAVGED------------------- 606 (1096)
Q Consensus 584 ~~--------------------------------------~~i~~~~~~~~~~~l~~~~~d------------------- 606 (1096)
.. ..-...+++|+...+++...+
T Consensus 346 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~ 425 (571)
T d2ad6a1 346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccc
Confidence 00 000125667776666553322
Q ss_pred ------------------CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccc
Q 001343 607 ------------------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (1096)
Q Consensus 607 ------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 668 (1096)
|.|.-+|+.+++.+........ ..+-...-.+.++++++.||.++-+|..+|+.+- ..
T Consensus 426 ~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~---~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW-~~ 501 (571)
T d2ad6a1 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW-NF 501 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE-EE
T ss_pred ccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCC---CCcceeEecCCEEEEECCCCeEEEEECCCCcEEE-EE
Confidence 4688888888888877654322 1211223356688889999999999999994433 22
Q ss_pred cCCCcccccCcceeEEeecCCCeE
Q 001343 669 ENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 669 ~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
..... .. -.-+.+..||+..
T Consensus 502 ~l~~~-~~---a~P~ty~~dGkqY 521 (571)
T d2ad6a1 502 KMPSG-GI---GSPMTYSFKGKQY 521 (571)
T ss_dssp ECSSC-CC---SCCEEEEETTEEE
T ss_pred ECCCC-ce---ecceEEEECCEEE
Confidence 22111 01 1125667788653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.34 E-value=0.027 Score=59.60 Aligned_cols=279 Identities=7% Similarity=-0.043 Sum_probs=141.3
Q ss_pred eEEEEEcCCCCcEEEEEeCCC-----------eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 347 VISMDFHPSHQTLLLVGSSNG-----------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg-----------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
+...+...+|+ +++.|+.+. .+.+||..+++-.... .....|.......++.
T Consensus 22 ~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~ 84 (387)
T d1k3ia3 22 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMD 84 (387)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEEC
T ss_pred cEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC----------------CCCCCcccceeEEEEe
Confidence 34444556777 677776421 3778999887643210 0112233333456788
Q ss_pred CCCCEEEEEECC-CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC------CcEEEEE-cCCceE
Q 001343 416 PDGNYVGVAFTK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LSGRKL 487 (1096)
Q Consensus 416 pd~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d------~~i~iwd-~~~~~~ 487 (1096)
+||++++.|+.+ ..+.+||..+..-.. ...+... ..-..++..+||+ +++.|+.+ ..+.+|| .+.+-
T Consensus 85 ~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~-r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W- 159 (387)
T d1k3ia3 85 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW- 159 (387)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE-
T ss_pred cCCcEEEeecCCCcceeEecCccCcccc-ccccccc-ccccceeeecCCc--eeeeccccccccccceeeeecCCCCce-
Confidence 999999998765 589999998764322 1112211 2224567778888 77777643 4688999 54432
Q ss_pred EEeeC----------CCCC----eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC--C----CC--cEEEE-
Q 001343 488 FNFEG----------HEAP----VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--P----GH--WCTTM- 544 (1096)
Q Consensus 488 ~~~~~----------~~~~----v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~----~~--~i~~l- 544 (1096)
..+.. +... -....+. ..++..++.++.++.+.+++..+......... . .. .-.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (387)
T d1k3ia3 160 TSLPNAKVNPMLTADKQGLYRSDNHAWLFG-WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 238 (387)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEEE-CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eecCCCcccccccccccceeeccceeEEEE-eCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence 22110 0000 0001111 12456666666667776666655433221110 0 00 11222
Q ss_pred EEcCCCCEEEEEeeccCC----CCeEEEEeCCC---CeeeEEEcC--cCccceEEEEEeCCCCEEEEEEcC---------
Q 001343 545 LYSADGSRLFSCGTSKDG----DSFLVEWNESE---GTIKRTYAG--FRKKSNGVVQFDTTQNHFLAVGED--------- 606 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~----~~~i~iwd~~~---~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d--------- 606 (1096)
....+++.++.++..... .....+.+... ......... ............++++.+++|+.+
T Consensus 239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~ 318 (387)
T d1k3ia3 239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318 (387)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence 223466666666642211 11223333221 111111111 111122235556888988888743
Q ss_pred --CeEEEEeCCCCeEEEEeecCCCCCCccE-EEEeCCCCEEEEEEC
Q 001343 607 --SQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSKEGNLLAVTTA 649 (1096)
Q Consensus 607 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~ 649 (1096)
..+.+||..+.+....-...... .-.+ ..+.+||++++.|+.
T Consensus 319 ~~~~ve~Ydp~~~~W~~~~~~~~~R-~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 319 PVFTPEIYVPEQDTFYKQNPNSIVR-VYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCC-CTTEEEEECTTSCEEEEECC
T ss_pred EeceEEEEECCCCeEEECCCCCCcc-cceEEEEECCCCEEEEEeCC
Confidence 14788998877644332221110 1123 345789999999884
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.099 Score=51.39 Aligned_cols=233 Identities=10% Similarity=-0.017 Sum_probs=137.4
Q ss_pred CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEccCCCccccc
Q 001343 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQH 444 (1096)
Q Consensus 366 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~ 444 (1096)
...|+-.++.+..... +......+.+++|++..+.|.-.. ..+.|.-.+++........
T Consensus 9 ~~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~ 68 (266)
T d1ijqa1 9 RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68 (266)
T ss_dssp BSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcce
Confidence 4468888887654321 222345678999999888777664 4567776666543221111
Q ss_pred e-eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceE-EEeeCCCCCeEEEEeeecCCCcEEEEE-ECCCeEE
Q 001343 445 S-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIK 521 (1096)
Q Consensus 445 ~-~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~ 521 (1096)
. .+......+.++++.+.+.. +.++-...+.|.+.+.+|... ..+.........++++|. .|.++.+. +..+.|.
T Consensus 69 ~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~~~~~~~I~ 146 (266)
T d1ijqa1 69 DTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIK 146 (266)
T ss_dssp EEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEE
T ss_pred EEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEeccCCCccee
Confidence 1 12233455778999887775 445556678899999655543 334444566788888764 33333333 2345666
Q ss_pred EEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc-cceEEEEEeCCCCEE
Q 001343 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHF 600 (1096)
Q Consensus 522 iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l 600 (1096)
-.+++.................+++.+.++.|+.+.. ..+.|...++.............. .....+++. +..|
T Consensus 147 r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~l 221 (266)
T d1ijqa1 147 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKV 221 (266)
T ss_dssp EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEE
T ss_pred EeccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEE
Confidence 6666654444444344456789999998888887743 367888888865544333333221 123345554 3455
Q ss_pred EEE-EcCCeEEEEeCCCCeEEEEeec
Q 001343 601 LAV-GEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 601 ~~~-~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
+.+ ..++.|+..+..+++....+..
T Consensus 222 y~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 222 FWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp EEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EEEECCCCeEEEEECCCCcceEEEEc
Confidence 554 3667888888777765555543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.27 E-value=0.12 Score=55.25 Aligned_cols=248 Identities=10% Similarity=0.046 Sum_probs=133.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC----eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.+..+++||||++++++-+.+| .|++.|+.+|+.+.. . +.. .....++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~-----------------i~~--~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------LER--VKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------EEE--ECSCCEEECTTSSEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-c-----------------ccc--ccccceEEcCCCCEE
Confidence 3456788999996555544444 799999999987642 0 111 112468999999988
Q ss_pred EEEECC----------------CeEEEEEccCCCccccceeecc--cccCEEEEEEecCCCcEEEEEEe-CCCcEEEE--
Q 001343 422 GVAFTK----------------HLIQLYSYAGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVW-- 480 (1096)
Q Consensus 422 ~s~~~d----------------g~i~vwd~~~~~~~~~~~~l~~--h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iw-- 480 (1096)
+....+ ..|..|.+.+...-... .+.. ....+..+..+.+++.+++.+.. .+....+|
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~-v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL-CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEeccccCcccccccccCCcceEEEEECCCCcccccc-ccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 765432 25777777665332211 2232 23456778889999952222322 23344444
Q ss_pred E-cCCc--------eEEEeeCCCCCeEEEEeeecCCCcEEEEEE---CCCeEEEEEcCCCCee--eEEe-CCCCcEEEEE
Q 001343 481 E-LSGR--------KLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGSR--VDYD-APGHWCTTML 545 (1096)
Q Consensus 481 d-~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~--~~~~-~~~~~i~~l~ 545 (1096)
| .... .............-+.. . ++.+++... .++.|...++...... ..+. .+...+..-.
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~ 341 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred eCCCcccccccccceeEeecccccceEEEec--C-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence 4 2111 11122222222332221 1 223333332 3466777776654331 2232 3334454444
Q ss_pred EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE----cCCeEEEEeCCCCeE
Q 001343 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1096)
+...+.+|+.... .++...|++++..++.....+..... .+..+...++...+...- .-.+++-+|+.+++.
T Consensus 342 ~~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~-sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 342 ACVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEECCEEEEEEE-cCCEeEEEEEECCCCcEEEecCCCCc-eEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 4444556665542 23456789999998877665544433 454454445555444332 336788999988753
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.26 E-value=0.018 Score=59.03 Aligned_cols=198 Identities=11% Similarity=0.075 Sum_probs=123.1
Q ss_pred EEEEec---CCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC-CCCCeEEEEeeecCCCcEEEEEECCC------------
Q 001343 456 DLAFAY---PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDG------------ 518 (1096)
Q Consensus 456 ~l~~s~---d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg------------ 518 (1096)
.+.|.. ||++ +++.-..+..|.+-| ...++...... ....+..+...+.++..+++.++.+.
T Consensus 89 ~~S~TdGtyDGry-lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d 167 (459)
T d1fwxa2 89 HMSFTEGKYDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 167 (459)
T ss_dssp EEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccccCCccceeE-EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence 455543 7885 566666788999999 66666554432 34456666666566667888777633
Q ss_pred ------eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccC-----------CCCeE---------------
Q 001343 519 ------KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD-----------GDSFL--------------- 566 (1096)
Q Consensus 519 ------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~-----------~~~~i--------------- 566 (1096)
.+.++|.++.+......... ....+.++++|+++++.+.+.. ....+
T Consensus 168 ~~~y~~~~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 168 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp GG-EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred hhhcceEEEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence 36678888777766555433 4668899999999998764211 01122
Q ss_pred --------EEEeCCCC---eeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCe------------EEEE
Q 001343 567 --------VEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN------------ILTS 622 (1096)
Q Consensus 567 --------~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~ 622 (1096)
.+.|.++. ..++.+.... ....+.++|||+++++++ -+.++.|+|++.-. ....
T Consensus 247 k~~eingV~VVD~~~~~~~~v~~yIPVpK--sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e 324 (459)
T d1fwxa2 247 DYQELNGVKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 324 (459)
T ss_dssp CSEEETTEEEEECSGG--CSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred CcEEeCCceeecccccCCcceeEEEecCC--CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence 33333321 1222222111 233478999999998876 68899999986311 1111
Q ss_pred eecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 623 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.+. + . .....+|...|+...+---|..|.-|++..
T Consensus 325 ~el-g-l-gPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 325 PEL-G-L-GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp CBC-C-S-CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccc-C-c-CccccccCCCceEEEEeeccceEEEEecch
Confidence 111 1 1 345678888887666667899999999853
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.24 E-value=0.11 Score=50.87 Aligned_cols=235 Identities=11% Similarity=0.001 Sum_probs=143.3
Q ss_pred CEEEEEECCCeEEEEEccCCCccc--cceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEe-eCCCC
Q 001343 419 NYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEA 495 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~~~~--~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~ 495 (1096)
.+|+.+.. +.|+-.+++...... ....+..+...+..++|.+.++. ++.+-..++.|+..+.+|.....+ .....
T Consensus 2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence 34554433 577777776543221 11124445566888999988774 344455667888888555444443 33335
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
.+.++++.... +.+.++-...+.|.+.+++..............+..+++.|...+++...... ....|.--++....
T Consensus 80 ~p~~iAvD~~~-~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTN 157 (263)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCC
T ss_pred cccEEEEeccC-CeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC-CCcEEEEecCCCCC
Confidence 67888886543 34444556678999999886665444444445789999999888887654311 12345555555433
Q ss_pred eeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
....... .-.....+++++.++.|+.+. ..+.|...+++.......+.... ...++++. ++.+..+-...+.|.
T Consensus 158 ~~~i~~~-~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~-~~~lYwtd~~~~~I~ 232 (263)
T d1npea_ 158 RRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTNSVI 232 (263)
T ss_dssp CEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTTEEE
T ss_pred ceeeeee-cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE-CCEEEEEECCCCEEE
Confidence 3332222 222456799998888776664 67789999997665554444332 34577775 344444444667888
Q ss_pred EEEcCCCc
Q 001343 655 ILANAIGL 662 (1096)
Q Consensus 655 iwd~~~~~ 662 (1096)
..|..++.
T Consensus 233 ~~~~~~g~ 240 (263)
T d1npea_ 233 AMDLAISK 240 (263)
T ss_dssp EEETTTTE
T ss_pred EEECCCCc
Confidence 88887773
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.18 E-value=0.2 Score=55.53 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=40.7
Q ss_pred CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccc
Q 001343 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDT 914 (1096)
Q Consensus 852 g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~ 914 (1096)
|.|.-||+.+|+.+-..... .+..+=.++- .+.+++.|+.||.++-+|.++++ .+|+.+.
T Consensus 453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe-~LW~~~~ 512 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGD-LLWKFKI 512 (596)
T ss_dssp EEEEEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCC-EEEEEEC
T ss_pred ceEEEEeCCCCceecccCCC-CCCccceeEe-cCCEEEEECCCCeEEEEECCCCc-EeeEEEC
Confidence 46777888888876554311 1222112233 45688889999999999999999 7777654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.14 E-value=0.13 Score=49.72 Aligned_cols=273 Identities=8% Similarity=0.038 Sum_probs=150.0
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1096)
...+.+.|+.++..+.+-.-. ..+.-.+|..+.++.-+ ...+.+||+++.+.++...... .|.--.|-.+ +
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis~-~ 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEESSS-S
T ss_pred CceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---CcEEEEecCC-C
Confidence 568889999876533222211 11245678888777766 5689999999999999988765 4555566544 4
Q ss_pred EEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCcc
Q 001343 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1096)
.|+..+. ..|+-|+++......+.+..+..- ....|-....+++.++++..+-.
T Consensus 115 ~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L-~~~QIInY~~d~~~kW~~l~GI~------------------------ 168 (327)
T d1utca2 115 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL-AGCQIINYRTDAKQKWLLLTGIS------------------------ 168 (327)
T ss_dssp EEEEECS-SEEEEEESSSSCCCEEEEECCGGG-TTCEEEEEEECTTSCEEEEEEEE------------------------
T ss_pred EEEEEcC-CceEEEcccCCCCchhhhhhcccc-cCceEEEEEECCCCCEEEEEeEe------------------------
Confidence 5665554 479999996554555555555432 23445555667777776322110
Q ss_pred CCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecC--CceEEEee----cCCeEEEeeccCC
Q 001343 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS--AVGLLALG----SNGVQKLWKWHRN 796 (1096)
Q Consensus 723 s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~----~dg~v~vw~~~~~ 796 (1096)
..++ ...|.+.+|..+. +. ...+.| |......+.+..+ ...+++-+ ..+.+.+-++...
T Consensus 169 ~~~~------~i~G~mQLYS~er----~~--sQ~ieG---haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~ 233 (327)
T d1utca2 169 AQQN------RVVGAMQLYSVDR----KV--SQPIEG---HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 233 (327)
T ss_dssp EETT------EEEEEEEEEETTT----TE--EEEECC---SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCC
T ss_pred cCCC------ceeEEEEEEEecc----Cc--Cccccc---eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCC
Confidence 0011 1126778888762 11 112333 3333222222111 11122211 2367777777542
Q ss_pred ccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCe
Q 001343 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS 875 (1096)
Q Consensus 797 ~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i 875 (1096)
.. |.. .-..+.....++..+..+---++.+|+.-.++..-. -|-|.+||+.++.++-.-+--...|
T Consensus 234 ~~---g~~----------~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~i 300 (327)
T d1utca2 234 PT---GNQ----------PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI 300 (327)
T ss_dssp CT---TCC----------CCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred cc---CCC----------CCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCce
Confidence 21 100 000111111222112334455678887777777776 6999999999999987665555566
Q ss_pred eEEEEecCCCcEEEEeeCCCeEEE
Q 001343 876 TFLAFHPQDNNIIAIGTEDSTIHI 899 (1096)
Q Consensus 876 ~~l~~s~~d~~~l~s~~~dg~i~i 899 (1096)
-.-+-.. ...-++....+|.|..
T Consensus 301 F~~a~~~-~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 301 FVTAPHE-ATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEEEET-TTTEEEEEETTSEEEE
T ss_pred EEeccCC-CCceEEEECCCCeEEE
Confidence 5444444 3334454556776543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.13 E-value=0.12 Score=57.63 Aligned_cols=258 Identities=12% Similarity=0.074 Sum_probs=143.4
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeeccccc-CEEEEEEecCCCcEEEEEEeC------CCcEEEEE-cCCceEEE
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG-AVNDLAFAYPNKLLCVVTCGD------DKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~-~v~~l~~s~d~~~~~l~s~s~------d~~i~iwd-~~~~~~~~ 489 (1096)
+..|+.++.|+.|.-.|.++|+.+.....-..+.. .++.--.--++ .++.+.. .|.|+-+| .+|+.+.+
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~---~vivg~~~~e~~~~G~v~A~Da~TG~~~W~ 197 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD---KVIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT---EEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECC---eEEEeeccccccccCceEEEECCCCcEEEE
Confidence 44788888999999999999987654321111111 12111111133 3444442 48999999 99999877
Q ss_pred eeCCC-------------------------------------CCeE-EEEeeecCCCcEEEEEEC---------------
Q 001343 490 FEGHE-------------------------------------APVY-SICPHHKENIQFIFSTAI--------------- 516 (1096)
Q Consensus 490 ~~~~~-------------------------------------~~v~-~~~~~~~~~~~~l~s~~~--------------- 516 (1096)
+.... ..++ .+++.+ ...+++.+..
T Consensus 198 ~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~--~~~lvy~~tg~~~p~~~~~r~g~n~ 275 (596)
T d1w6sa_ 198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP--GTNLIYFGTGNPAPWNETMRPGDNK 275 (596)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred eeccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc--CCCeeeccccccccccccccccccc
Confidence 64211 1111 223322 2334444432
Q ss_pred -CCeEEEEEcCCCCeeeEEeCCCC---------cEEEEE-EcCCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcC
Q 001343 517 -DGKIKAWLYDTMGSRVDYDAPGH---------WCTTML-YSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 517 -dg~i~iwd~~~~~~~~~~~~~~~---------~i~~l~-~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
...|.-.|+++++....++...+ ...-+. ...+|+ .++.... ++.++++|..+|+++.....
T Consensus 276 ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k----~G~~~vlDr~tG~~i~~~~~ 351 (596)
T d1w6sa_ 276 WTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDR----NGIVYTLDRTDGALVSANKL 351 (596)
T ss_dssp TSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECT----TSEEEEEETTTCCEEEEEES
T ss_pred ccccccccccccccccccccceeccccCCccccceeeeeccccccccccceecccc----ccceeeecCCCCceeeeccc
Confidence 23477788888888776654322 111111 234454 3444443 88999999999988754321
Q ss_pred cCc------------cc--------------------------eEEEEEeCCCCEEEEEEc-------------------
Q 001343 583 FRK------------KS--------------------------NGVVQFDTTQNHFLAVGE------------------- 605 (1096)
Q Consensus 583 ~~~------------~~--------------------------i~~~~~~~~~~~l~~~~~------------------- 605 (1096)
... .+ -...+++|+...++....
T Consensus 352 ~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~ 431 (596)
T d1w6sa_ 352 DDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFF 431 (596)
T ss_dssp STTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccc
Confidence 100 00 012355665555544321
Q ss_pred --------------------CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccc
Q 001343 606 --------------------DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1096)
Q Consensus 606 --------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 665 (1096)
-|.|.-||..+++.+....... .+..-..+..+.+++.|+.||.++-+|..+|+. +
T Consensus 432 ~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~---~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~-L 507 (596)
T d1w6sa_ 432 VGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL-L 507 (596)
T ss_dssp CCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCE-E
T ss_pred cccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCC---CCccceeEecCCEEEEECCCCeEEEEECCCCcE-e
Confidence 1568888888888877654332 222223344677888999999999999999944 4
Q ss_pred ccccCCCcccccCcceeEEeecCCCeE
Q 001343 666 RAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 666 ~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
-.+..... .. -.-+.+..+|+..
T Consensus 508 W~~~~~~~-~~---a~P~tY~~dGkQY 530 (596)
T d1w6sa_ 508 WKFKIPSG-AI---GYPMTYTHKGTQY 530 (596)
T ss_dssp EEEECSSC-CC---SCCEEEEETTEEE
T ss_pred eEEECCCC-cc---cCCeEEEECCEEE
Confidence 33322211 11 1125666788643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.13 E-value=0.086 Score=55.40 Aligned_cols=121 Identities=10% Similarity=0.145 Sum_probs=76.3
Q ss_pred cEEEEEEcCCCCEEEEEeeccCC-------CCeEEEEeCCCCeeeE--EEcCcCccceEEEEEeCCCCEEEEEEcC-CeE
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDG-------DSFLVEWNESEGTIKR--TYAGFRKKSNGVVQFDTTQNHFLAVGED-SQI 609 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~-------~~~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i 609 (1096)
.+...+...+|+.++.++...+. ...+.+||..+++... .............++.+++..++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 34445555677777777742211 1146789998876432 2222222123346788999988888654 589
Q ss_pred EEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC------CcEEEEEcCCC
Q 001343 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD------NGFKILANAIG 661 (1096)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~ 661 (1096)
.+||..+......-..... ..-...+..+||++++.++.+ ..+.+||..+.
T Consensus 101 ~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp EEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred eEecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence 9999988776543332221 133567778899999998753 35889998776
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.11 E-value=0.15 Score=56.68 Aligned_cols=107 Identities=9% Similarity=-0.004 Sum_probs=63.9
Q ss_pred EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCcc---------ce-EEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK---------SN-GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~---------~i-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1096)
.+++++. ++.|+-+|.++|+.+-++...... .+ ..+.+. +..++.++.|+.++-.|..+|+.+.
T Consensus 79 ~vyv~t~----~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W 152 (573)
T d1kb0a2 79 IMYVSAS----WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVW 152 (573)
T ss_dssp EEEEECG----GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEECC----CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeecccccccee
Confidence 4445544 778999999999998877532110 00 112222 3467888899999999999999987
Q ss_pred EeecCCCCCCccEEEEeC--CCCEEEEEEC------CCcEEEEEcCCCccc
Q 001343 622 STDAEGGLPNLPRLRFSK--EGNLLAVTTA------DNGFKILANAIGLRS 664 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~ 664 (1096)
......+...-..+.-.| -+..+++++. .|.|+-+|..+|...
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~ 203 (573)
T d1kb0a2 153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (573)
T ss_dssp EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred cccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccce
Confidence 765432211111111111 1234455432 467999999998433
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.00031 Score=61.82 Aligned_cols=77 Identities=13% Similarity=0.260 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-------chHHHHHHH
Q 001343 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1096)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1096)
++|+|+.+.||||+..|+.++|..|+.+.-.-+...+.+++++|..+....++.+++....++. ++.+-..|+
T Consensus 45 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl 124 (149)
T d2nxpa1 45 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 124 (149)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHHHHHHH
Confidence 9999999999999999999999999999877677778899999999999988888887776765 233344555
Q ss_pred HHHH
Q 001343 145 IELK 148 (1096)
Q Consensus 145 ~~l~ 148 (1096)
..|+
T Consensus 125 ~~L~ 128 (149)
T d2nxpa1 125 RHLQ 128 (149)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5554
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.08 E-value=0.063 Score=59.77 Aligned_cols=192 Identities=11% Similarity=0.080 Sum_probs=112.1
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCC----------CCe-EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHE----------APV-YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY 534 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~----------~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 534 (1096)
.++.++.++.|.-+| .+|+.+.++.... ..+ ..+.+. + ..++.++.|+.+...|..+++.+...
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~---~-~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW---K-GKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE---T-TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE---C-CcEEEEecccceeeeccccccceecc
Confidence 466677788899999 8899887764211 111 112221 2 36778888999998999998887765
Q ss_pred eCCCCcE--EEEEEcC--CCCEEEEEeec--cCCCCeEEEEeCCCCeeeEEEcCcCc-----------------------
Q 001343 535 DAPGHWC--TTMLYSA--DGSRLFSCGTS--KDGDSFLVEWNESEGTIKRTYAGFRK----------------------- 585 (1096)
Q Consensus 535 ~~~~~~i--~~l~~s~--~~~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~----------------------- 585 (1096)
....... ..+.-.| -+..+++++.. ....+.|+.+|.++|+.+-.+.....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~ 234 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (573)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence 4322110 0000001 12344444321 12356899999999999887643210
Q ss_pred -------c-ceEEEEEeCCCCEEEEEEc-------------------CCeEEEEeCCCCeEEEEeecCCCC-------CC
Q 001343 586 -------K-SNGVVQFDTTQNHFLAVGE-------------------DSQIKFWDMDNVNILTSTDAEGGL-------PN 631 (1096)
Q Consensus 586 -------~-~i~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~ 631 (1096)
. .-...++.+....++.+.. ...|.-.|.++++.....+...+. ..
T Consensus 235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~ 314 (573)
T d1kb0a2 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (573)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence 0 0112556676666655321 235777888888888776543321 01
Q ss_pred ccEEEEeCCC---CEEEEEECCCcEEEEEcCCCc
Q 001343 632 LPRLRFSKEG---NLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 632 v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
........++ ..++.++.+|.+.++|..+++
T Consensus 315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe 348 (573)
T d1kb0a2 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (573)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred eeecceecCCCceeeeeeccccceeEEecccccc
Confidence 1111222233 467778889999999999984
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.91 E-value=0.2 Score=55.30 Aligned_cols=192 Identities=11% Similarity=0.094 Sum_probs=114.7
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCC----------Ce-EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA----------PV-YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY 534 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 534 (1096)
.|+.++.++.|.-.| .+|+.+.++..... .+ ..++. .+..++.+..++.|.-.|..+++.....
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce----eCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence 466677788888889 88998887642211 01 11111 1246888899999999999999888766
Q ss_pred eCCCC-cEEEEEEcC--CCCEEEEEee--ccCCCCeEEEEeCCCCeeeEEEcCcCc------------------------
Q 001343 535 DAPGH-WCTTMLYSA--DGSRLFSCGT--SKDGDSFLVEWNESEGTIKRTYAGFRK------------------------ 585 (1096)
Q Consensus 535 ~~~~~-~i~~l~~s~--~~~~l~~~~~--~~~~~~~i~iwd~~~~~~~~~~~~~~~------------------------ 585 (1096)
..... ....+.-.| .+..++.+.. .....+.|.-+|.++|+.+-.+..-..
T Consensus 144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence 54322 100110011 1223333322 111246899999999999988753110
Q ss_pred ------cceEEEEEeCCCCEEEEEEc-------------------CCeEEEEeCCCCeEEEEeecCCCCCC-------cc
Q 001343 586 ------KSNGVVQFDTTQNHFLAVGE-------------------DSQIKFWDMDNVNILTSTDAEGGLPN-------LP 633 (1096)
Q Consensus 586 ------~~i~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~-------v~ 633 (1096)
..-...++.+....++.+.. ...|.-.|.++++....++...+... ..
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~ 303 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence 01122567777777665431 24577889999998887765443110 11
Q ss_pred EEEEeCCC---CEEEEEECCCcEEEEEcCCCc
Q 001343 634 RLRFSKEG---NLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 634 ~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
-+....++ ..++.++.+|.+.++|..++.
T Consensus 304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~ 335 (560)
T d1kv9a2 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (560)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred eeeeecCCceeeeeeecCccceEEEEecCCCc
Confidence 12222244 366778889999999999884
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.88 E-value=0.088 Score=56.25 Aligned_cols=245 Identities=11% Similarity=0.063 Sum_probs=123.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEE-CC----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-----
Q 001343 405 VPISVSRVAWSPDGNYVGVAF-TK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----- 474 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~-~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d----- 474 (1096)
+.-.+..+++|||++++|.+- .+ ..|+++|+.+|+.+.. .+. ......++|.+|++. |+-...|
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~--~~Y~~~~~~~~~ 196 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG--MFYNAYPQQDGK 196 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE--EEEEECCCCSSC
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--ccc--cccccceEEcCCCCE--EEEEEeccccCc
Confidence 444456678899999998652 22 3799999999876542 121 112256899999994 4433222
Q ss_pred -----------CcEEEEE-cCC--ceEEEeeCCCCC--eEEEEeeecCCCcEEEEEEC---CCeEEEE--EcCCCCe---
Q 001343 475 -----------KLIKVWE-LSG--RKLFNFEGHEAP--VYSICPHHKENIQFIFSTAI---DGKIKAW--LYDTMGS--- 530 (1096)
Q Consensus 475 -----------~~i~iwd-~~~--~~~~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~---dg~i~iw--d~~~~~~--- 530 (1096)
..|..|. -+. .....+.....+ +..+.. +.++.+++.... +....+| ++.....
T Consensus 197 ~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~--s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~ 274 (430)
T d1qfma1 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (430)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccCCcceEEEEECCCCccccccccccccCCceEEeeec--cCCcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence 2466665 222 222333433333 344444 446677654332 3334444 4332211
Q ss_pred ----eeE-EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee--EEEcCcCccceEEEEEeCCCCEEEEE
Q 001343 531 ----RVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAV 603 (1096)
Q Consensus 531 ----~~~-~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~ 603 (1096)
... ..........+ .+ +|..+...+.....++.|...++...... ..+-.+....+..-.+...+.+|+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~ 352 (430)
T d1qfma1 275 GILKWVKLIDNFEGEYDYV-TN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (430)
T ss_dssp SSCCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred cccceeEeecccccceEEE-ec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEE
Confidence 111 11112222222 22 33334433322233567777777654321 23332222234333444445566654
Q ss_pred E-cCC--eEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC----CCcEEEEEcCCC
Q 001343 604 G-EDS--QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIG 661 (1096)
Q Consensus 604 ~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~ 661 (1096)
. .++ .|++++..++........... .|..+...++...+..... -.++.-+|+.++
T Consensus 353 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~--sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~ 415 (430)
T d1qfma1 353 YLHDVKNTLQLHDLATGALLKIFPLEVG--SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (430)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECCCSS--EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEcCCEeEEEEEECCCCcEEEecCCCCc--eEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence 3 554 588999988877655443322 4444444455544443322 256777888776
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.87 E-value=0.49 Score=51.96 Aligned_cols=305 Identities=13% Similarity=0.088 Sum_probs=162.8
Q ss_pred EEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCC
Q 001343 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439 (1096)
Q Consensus 360 lasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~ 439 (1096)
+..++.++.|.-.|..+|+.+-++....... .............+ +. .+..++.+..++.|.-.|..+|+
T Consensus 69 vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~-----~~~~~~~~~~~~~~---~~--~~~~v~~~~~~g~l~Alda~tG~ 138 (560)
T d1kv9a2 69 IYTSMSWSRVIAVDAASGKELWRYDPEVAKV-----KARTSCCDAVNRGV---AL--WGDKVYVGTLDGRLIALDAKTGK 138 (560)
T ss_dssp EEEEEGGGEEEEEETTTCCEEEEECCCCCGG-----GGGGCTTCSCCCCC---EE--EBTEEEEECTTSEEEEEETTTCC
T ss_pred EEEECCCCeEEEEeCCCCCEEEEECCCCCcc-----ccccccccccccCc---ce--eCCeEEEEeCCCEEEEEECCCCc
Confidence 5566788999999999998774321111000 00000011111111 11 14567778888888888888887
Q ss_pred ccccceeeccccc--CEEEEEEecCCCcEEEEEEeC------CCcEEEEE-cCCceEEEeeCC-----------------
Q 001343 440 DLRQHSQIDAHVG--AVNDLAFAYPNKLLCVVTCGD------DKLIKVWE-LSGRKLFNFEGH----------------- 493 (1096)
Q Consensus 440 ~~~~~~~l~~h~~--~v~~l~~s~d~~~~~l~s~s~------d~~i~iwd-~~~~~~~~~~~~----------------- 493 (1096)
.+..... ..+.. .++..-.--++. ++.+.. .|.|.-+| .+|+.+..+..-
T Consensus 139 ~~w~~~~-~~~~~~~~~~~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~ 214 (560)
T d1kv9a2 139 AIWSQQT-TDPAKPYSITGAPRVVKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA 214 (560)
T ss_dssp EEEEEEC-SCTTSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred EEeccCc-cCcccceeeeeeeeeecCc---ccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccc
Confidence 6653221 11111 111111111332 333332 36799999 999998776421
Q ss_pred -------------CCCeE-EEEeeecCCCcEEEEEEC-------------------CCeEEEEEcCCCCeeeEEeCCCCc
Q 001343 494 -------------EAPVY-SICPHHKENIQFIFSTAI-------------------DGKIKAWLYDTMGSRVDYDAPGHW 540 (1096)
Q Consensus 494 -------------~~~v~-~~~~~~~~~~~~l~s~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~ 540 (1096)
...++ .+++.+ ...+++.+.. ...|.-.|+++++....++...+.
T Consensus 215 ~~~~~~~~~~~~~G~~~W~~~s~D~--~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D 292 (560)
T d1kv9a2 215 KTWQGDQYWKLGGGGTVWDSMAYDP--ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGD 292 (560)
T ss_dssp TTCCSSCHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC
T ss_pred ccccccccccccCCCCccccccccc--ccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccc
Confidence 11122 122322 2233433221 234666678888877665543321
Q ss_pred ---------EEEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc-----------------------
Q 001343 541 ---------CTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----------------------- 585 (1096)
Q Consensus 541 ---------i~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----------------------- 585 (1096)
..-+.+..+++ .++.+. .++.++++|..+|+++........
T Consensus 293 ~wd~d~~~~~~l~~~~~~g~~~~~v~~~~----k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 368 (560)
T d1kv9a2 293 SWDFTATQQITLAELNIDGKPRKVLMQAP----KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEK 368 (560)
T ss_dssp CSCCCCCSCEEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSS
T ss_pred cccccccceeeeeeeecCCceeeeeeecC----ccceEEEEecCCCcccccccccccccccccChhhccccccccccccc
Confidence 11122222333 233333 388999999999988765432110
Q ss_pred ------------cceEEEEEeCCCCEEEEEEc------------------------------------CCeEEEEeCCCC
Q 001343 586 ------------KSNGVVQFDTTQNHFLAVGE------------------------------------DSQIKFWDMDNV 617 (1096)
Q Consensus 586 ------------~~i~~~~~~~~~~~l~~~~~------------------------------------dg~i~iwd~~~~ 617 (1096)
......+++|+...++.... .|.|.-||+.++
T Consensus 369 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tG 448 (560)
T d1kv9a2 369 EPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ 448 (560)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT
T ss_pred cceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCC
Confidence 00112456777666665331 256888999999
Q ss_pred eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 618 NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 618 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
+.+........ ...-...-.+.++++|+.||.++-+|..+|+. +-.+..... .. -.-+.+..+|+..
T Consensus 449 k~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~-LW~~~l~~~-~~---~~P~ty~~dGkqy 515 (560)
T d1kv9a2 449 KAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA-LWQFEAQSG-IV---AAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSC-CC---SCCEEEEETTEEE
T ss_pred eEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcE-eEEEECCCC-cc---ccCEEEEECCEEE
Confidence 99887765432 22223344667888999999999999999944 333332211 11 1125566788643
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=96.64 E-value=0.0004 Score=59.48 Aligned_cols=77 Identities=12% Similarity=0.222 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-------chHHHHHHH
Q 001343 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1096)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1096)
++|+|+.+.||||+..|+.++|..|+.+.-..+. .+.+++++|+.+....++.+++....+++ ++.+-..|+
T Consensus 27 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s~~lL~ 105 (131)
T d2j4ba1 27 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 105 (131)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHHHHhcCceEEEeCHHHHHHHH
Confidence 9999999999999999999999999998655553 46789999999888887777766555533 233334555
Q ss_pred HHHHh
Q 001343 145 IELKK 149 (1096)
Q Consensus 145 ~~l~~ 149 (1096)
..|++
T Consensus 106 ~fL~~ 110 (131)
T d2j4ba1 106 NFLEE 110 (131)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55543
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.54 E-value=0.0009 Score=49.37 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHhhCCCcc--HHHHHHHHhccCHHHHHHHHcC
Q 001343 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN--MKYFEEKVQAGDWDEVEKYLSG 59 (1096)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1096)
++|+.+-|++||..+||.+++.+|++|+++.++ ...-..-+++-.|..+.++-++
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK 63 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence 579999999999999999999999999998875 4444455677777777665544
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=96.09 E-value=0.0007 Score=58.15 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-------chHHHHHHH
Q 001343 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1096)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1096)
++|+|+.+.||||+..+. .+|.+|+.+.-.-+...+.+++++|+.+....+..+++....+++ ++.+-..|+
T Consensus 29 lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl 107 (134)
T d2j49a1 29 IMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLL 107 (134)
T ss_dssp HHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHHHcCCeEEEEcHHHHHHHH
Confidence 999999999999999875 689999998777666667788999998888887777776665544 344444555
Q ss_pred HHHHh
Q 001343 145 IELKK 149 (1096)
Q Consensus 145 ~~l~~ 149 (1096)
..|++
T Consensus 108 ~fL~~ 112 (134)
T d2j49a1 108 YFLNE 112 (134)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.06 E-value=1.5 Score=48.21 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=43.0
Q ss_pred ceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEc
Q 001343 952 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 952 ~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~ 1014 (1096)
+.|.-+|+.+|+.+=+...+. ++.+-.++-.|.++++|+.||.++.+|.++|+.+....
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~----p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~ 524 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCC----CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence 568888888888655544332 22222345678888889999999999999999887655
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.58 E-value=1 Score=45.23 Aligned_cols=188 Identities=13% Similarity=0.159 Sum_probs=111.6
Q ss_pred EEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeee----cCCCcEEEEEEC--C--CeEEEEEcCCCCe-eeEEeCC
Q 001343 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH----KENIQFIFSTAI--D--GKIKAWLYDTMGS-RVDYDAP 537 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~--d--g~i~iwd~~~~~~-~~~~~~~ 537 (1096)
+++....++-|++||.+|+.+..+. .+.++.+..-. ..+...+++++. + .+|.+|.+..... ...+...
T Consensus 42 lI~gTdK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~ 119 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDP 119 (353)
T ss_dssp EEEEEETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCS
T ss_pred EEEEEcCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccc
Confidence 5666667777999998899998875 45677776532 122223445542 2 3688887764332 2222211
Q ss_pred -------CCcEEEEEE--cCC-CCEEEEEeeccCCCCeEEEEeC---CCC----eeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 538 -------GHWCTTMLY--SAD-GSRLFSCGTSKDGDSFLVEWNE---SEG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 538 -------~~~i~~l~~--s~~-~~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
...++.+|+ ++. |...+.... .++.+..|.+ ..+ +.++.+.... .+..|.+......|
T Consensus 120 ~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~---k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~--q~EGCVvDde~~~L 194 (353)
T d1h6la_ 120 NRPIASAIDEVYGFSLYHSQKTGKYYAMVTG---KEGEFEQYELNADKNGYISGKKVRAFKMNS--QTEGMAADDEYGSL 194 (353)
T ss_dssp SSCEECSSSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSSEEEEEEEEEECSS--CEEEEEEETTTTEE
T ss_pred ccccccccCcceEEEEEecCCCCeEEEEEEc---CCceEEEEEEEcCCCCceeeEeeeccCCCC--ccceEEEeCCCCcE
Confidence 124666666 654 444333332 2677777765 223 4555665443 57778899999999
Q ss_pred EEEEcCCeEEEEeCCC-----CeEEEEeecCCCCCCccEEEEeC----CCCEEEEEECCCcEEEEEcCCC
Q 001343 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSK----EGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.+-++..|..++... +..+....+..-...+-.++.-. +|.+|++.-.++++.+||....
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999988777776542 22333332222233566676543 3345555556788999998654
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.89 E-value=3.5 Score=45.00 Aligned_cols=191 Identities=13% Similarity=0.058 Sum_probs=111.9
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCC--------CCe-EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHE--------APV-YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~--------~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 536 (1096)
.|..++.++.|.-.| .+|+.+.++.... ..+ ..+++. +..++.++.|+.+.-.|..+++.+.....
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY----GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE----TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe----CCceEEecCCCeEEEecccccceeeeecc
Confidence 567778889999999 8899988764211 011 112221 24678889999999999999888765432
Q ss_pred CCC----c---EEEEEE-cCCCCEEEEEeec---cCCCCeEEEEeCCCCeeeEEEcCcCc--------------------
Q 001343 537 PGH----W---CTTMLY-SADGSRLFSCGTS---KDGDSFLVEWNESEGTIKRTYAGFRK-------------------- 585 (1096)
Q Consensus 537 ~~~----~---i~~l~~-s~~~~~l~~~~~~---~~~~~~i~iwd~~~~~~~~~~~~~~~-------------------- 585 (1096)
... . ...+.- -..+..++..+.. ....+.|.-+|.++|+.+-++.....
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 211 0 000111 1113333333211 11256788899999988776543211
Q ss_pred --------------------cceEEEEEeCCCCEEEEEEc------------------------CCeEEEEeCCCCeEEE
Q 001343 586 --------------------KSNGVVQFDTTQNHFLAVGE------------------------DSQIKFWDMDNVNILT 621 (1096)
Q Consensus 586 --------------------~~i~~~~~~~~~~~l~~~~~------------------------dg~i~iwd~~~~~~~~ 621 (1096)
.....+++.+..+.++.+.. ...+.-.|.++++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 01123567777777776541 2357778899999888
Q ss_pred EeecCCCCCCc-------cEEEEe-CCC---CEEEEEECCCcEEEEEcCCC
Q 001343 622 STDAEGGLPNL-------PRLRFS-KEG---NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 622 ~~~~~~~~~~v-------~~~~~s-~~~---~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.++...+.... .-+.+. .++ ..++..+.++.+.++|..++
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG 356 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCC
Confidence 87755432111 111121 133 35666778899999999888
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.55 E-value=4.2 Score=40.66 Aligned_cols=186 Identities=8% Similarity=0.059 Sum_probs=98.7
Q ss_pred EEEEEecCCCcEEEEEEe------------CCCcEEEEE-cCCce-EEEe--eCC-----CCCeEEEEeeecCCCc-EEE
Q 001343 455 NDLAFAYPNKLLCVVTCG------------DDKLIKVWE-LSGRK-LFNF--EGH-----EAPVYSICPHHKENIQ-FIF 512 (1096)
Q Consensus 455 ~~l~~s~d~~~~~l~s~s------------~d~~i~iwd-~~~~~-~~~~--~~~-----~~~v~~~~~~~~~~~~-~l~ 512 (1096)
-+|...|+|. .+++++ ..|.|.++| .+.+. ...+ .+. .-....+.+....++. +|+
T Consensus 38 EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~ 115 (340)
T d1v04a_ 38 EDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 115 (340)
T ss_dssp CEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred ceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence 3566667765 444443 138888888 43322 2222 111 1123455554444554 344
Q ss_pred EE---ECCCeEEEEEcCCCCeeeEE----eC-CCCcEEEEEEcCCCCEEEEEeecc-------------CCCCeEEEEeC
Q 001343 513 ST---AIDGKIKAWLYDTMGSRVDY----DA-PGHWCTTMLYSADGSRLFSCGTSK-------------DGDSFLVEWNE 571 (1096)
Q Consensus 513 s~---~~dg~i~iwd~~~~~~~~~~----~~-~~~~i~~l~~s~~~~~l~~~~~~~-------------~~~~~i~iwd~ 571 (1096)
+. ....+|.+|++........+ .. .....+.+++..++.++++-.... ...+.+.-||.
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~ 195 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 195 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence 44 24567888988655433222 11 223678999999998888742100 11334555554
Q ss_pred CCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CCCEEEE
Q 001343 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAV 646 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 646 (1096)
. +......+. ...+.++++|++++|+++. ..+.|++|++.....+.......-....-.+.+.+ +|.+.+.
T Consensus 196 ~--~~~~~~~~l--~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 196 N--DVRVVAEGF--DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp S--CEEEEEEEE--SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred C--ceEEEcCCC--CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence 3 332222222 2466799999998887765 67789999987543322221111111345677765 4444433
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.03 E-value=2.9 Score=37.31 Aligned_cols=151 Identities=9% Similarity=0.090 Sum_probs=84.3
Q ss_pred EEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC----------CCCeEEEEeeecCCCcEEEEEEC-CCeEEE
Q 001343 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH----------EAPVYSICPHHKENIQFIFSTAI-DGKIKA 522 (1096)
Q Consensus 454 v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~~~-dg~i~i 522 (1096)
|.-+....|++. ..++|+......+|-.+|..++.+..- ..-|..+.+.. ++..-++++.. .|.+++
T Consensus 104 vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~-g~~~sfF~adl~SG~lri 181 (313)
T d2hu7a1 104 MRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFG-GGRVSLFTSNLSSGGLRV 181 (313)
T ss_dssp BEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEE-TTEEEEEEEETTTEEEEE
T ss_pred EEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeec-CCcceEEEEecccCCEEE
Confidence 444444456665 677788777888888555545444211 12233333322 22233444444 666666
Q ss_pred EEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE-EcC-----cCccceEEEEEeCC
Q 001343 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAG-----FRKKSNGVVQFDTT 596 (1096)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~-----~~~~~i~~~~~~~~ 596 (1096)
++ ...+.++...+++..+. ++..... ++....-+|+++++..+. +.. ...-.+.-+-+.|+
T Consensus 182 ~t-----------pkeGS~~~ay~~~gnKV-~sdyEt~-gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pd 248 (313)
T d2hu7a1 182 FD-----------SGEGSFSSASISPGMKV-TAGLETA-REARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPD 248 (313)
T ss_dssp EC-----------CSSEEEEEEEECTTSCE-EEEEEES-SCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTT
T ss_pred ec-----------CCCCcccceeEccCcee-eeccCCC-CceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCC
Confidence 64 33445666666666555 4444322 234444668887765443 111 11123444668999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEEE
Q 001343 597 QNHFLAVGEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1096)
++.++.+-.||.-.+|. +|+.+.
T Consensus 249 d~L~iiakrdG~s~lF~--nGk~in 271 (313)
T d2hu7a1 249 GRLAVVARREGRSAVFI--DGERVE 271 (313)
T ss_dssp SCEEEEEEETTEEEEEE--TTEEEC
T ss_pred CcEEEEEecCCchheee--cceEec
Confidence 99989999999988887 455543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.24 E-value=9.7 Score=37.76 Aligned_cols=199 Identities=13% Similarity=0.205 Sum_probs=111.6
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec----CCCcEEEEEEeC--C--CcEEEEE--cCCc
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY----PNKLLCVVTCGD--D--KLIKVWE--LSGR 485 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~----d~~~~~l~s~s~--d--~~i~iwd--~~~~ 485 (1096)
|+..+++....++-|.+||++ |+.+.. + ..+.++.+..-. .++..-++.++. + .+|.+|. ....
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~---~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~ 111 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHS---Y--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEE---C--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEe---c--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence 345666666666679999996 555542 2 235666665432 233223444442 2 3677887 3444
Q ss_pred eEEEeeCCC-------CCeEEEEeeecC-CC-cEEEEEECCCeEEEEEcCCCC---e----eeEEeCCCCcEEEEEEcCC
Q 001343 486 KLFNFEGHE-------APVYSICPHHKE-NI-QFIFSTAIDGKIKAWLYDTMG---S----RVDYDAPGHWCTTMLYSAD 549 (1096)
Q Consensus 486 ~~~~~~~~~-------~~v~~~~~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~---~----~~~~~~~~~~i~~l~~s~~ 549 (1096)
.+..+.... ..+..+|+.... ++ .++++...+|.+..|.+.... . +..+. -...+..+++...
T Consensus 112 ~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde 190 (353)
T d1h6la_ 112 TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDE 190 (353)
T ss_dssp EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETT
T ss_pred ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCC
Confidence 454443221 236777774332 33 367778889999988764221 1 12333 2347889999999
Q ss_pred CCEEEEEeeccCCCCeEEEEeCC--C---CeeeEEEcC-cCccceEEEEEe--CCCC-EEEEEE-cCCeEEEEeCCC-Ce
Q 001343 550 GSRLFSCGTSKDGDSFLVEWNES--E---GTIKRTYAG-FRKKSNGVVQFD--TTQN-HFLAVG-EDSQIKFWDMDN-VN 618 (1096)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~--~---~~~~~~~~~-~~~~~i~~~~~~--~~~~-~l~~~~-~dg~i~iwd~~~-~~ 618 (1096)
...|+.+-. +..++.++.. . +..+....+ +-...+..++.- .++. +|++.+ .+++..+||... .+
T Consensus 191 ~~~LyisEE----~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~ 266 (353)
T d1h6la_ 191 YGSLYIAEE----DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNK 266 (353)
T ss_dssp TTEEEEEET----TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred CCcEEEecC----ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcc
Confidence 888888854 5555555543 1 223322222 212245555543 2333 544444 778999999976 46
Q ss_pred EEEEeec
Q 001343 619 ILTSTDA 625 (1096)
Q Consensus 619 ~~~~~~~ 625 (1096)
.+..+..
T Consensus 267 ~~g~F~i 273 (353)
T d1h6la_ 267 YVADFQI 273 (353)
T ss_dssp EEEEEEE
T ss_pred ccceEEE
Confidence 6666543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=87.54 E-value=15 Score=36.37 Aligned_cols=187 Identities=11% Similarity=0.037 Sum_probs=102.1
Q ss_pred EEEEEEcCCCCEEEEEEC------------CCeEEEEEccCCCccccceeeccc-----ccCEEEEEE--ecCCCcEEEE
Q 001343 409 VSRVAWSPDGNYVGVAFT------------KHLIQLYSYAGSNDLRQHSQIDAH-----VGAVNDLAF--AYPNKLLCVV 469 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~l~~h-----~~~v~~l~~--s~d~~~~~l~ 469 (1096)
--.|+..|||..+++++. .|.|.++|+++.+.......+.+. .-....+.. .++|.. +|+
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~ 115 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLL 115 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEE
Confidence 345788899887776642 389999998875443221122211 112344443 445654 444
Q ss_pred EE---eCCCcEEEEE--cCCceEEE---eeC-CCCCeEEEEeeecCCCcEEEEEEC---------------CCeEEEEEc
Q 001343 470 TC---GDDKLIKVWE--LSGRKLFN---FEG-HEAPVYSICPHHKENIQFIFSTAI---------------DGKIKAWLY 525 (1096)
Q Consensus 470 s~---s~d~~i~iwd--~~~~~~~~---~~~-~~~~v~~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~ 525 (1096)
.. ....+|-+|+ ..+..+.- +.. .....+.+++.. ++.+++|-.. -+...+|..
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~--~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~ 193 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 193 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec--CCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence 44 2456788888 33333322 221 123467777754 5567776311 123344554
Q ss_pred CCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee---EEEcCcCccceEEEEEeCCCCEEEE
Q 001343 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK---RTYAGFRKKSNGVVQFDTTQNHFLA 602 (1096)
Q Consensus 526 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~ 602 (1096)
+........ ..-...+.++++||+++|+++.. ..+.|+.|++...... ..+.. .....-+.+.+.+..+.+
T Consensus 194 ~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t---~~~~i~~y~~~~~~~l~~~~~~~l--~~~pDNi~~d~~~g~lwv 267 (340)
T d1v04a_ 194 SPNDVRVVA-EGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGDLWV 267 (340)
T ss_dssp CSSCEEEEE-EEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCCEEE
T ss_pred cCCceEEEc-CCCCccceeEECCCCCEEEEEeC---CCCeEEEEEeCCCcccceEEEecC--CCCCCccEEecCCCEEEE
Confidence 544433322 22346789999999999988765 2678998888644322 22221 113445777764444444
Q ss_pred EE
Q 001343 603 VG 604 (1096)
Q Consensus 603 ~~ 604 (1096)
++
T Consensus 268 a~ 269 (340)
T d1v04a_ 268 GC 269 (340)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.78 E-value=6.8 Score=40.85 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=37.9
Q ss_pred CCeeeeeecCCCcEEEEec-CCeEEEEEcccceEE--Eeec------CCCCCeeEEEEecC
Q 001343 832 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM--TTFM------SPPPASTFLAFHPQ 883 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~--~~~~------~h~~~i~~l~~s~~ 883 (1096)
...++|+|.|||+++++-- .|+|++++..++... ..+. .-.+....|+|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 4567999999999999886 699999998776543 2221 11245678999984
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.36 E-value=20 Score=37.00 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=27.4
Q ss_pred CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccce
Q 001343 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 872 ~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~ 906 (1096)
-...++|+|.| |++++++--..|.|++++..++.
T Consensus 26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~ 59 (450)
T d1crua_ 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGS 59 (450)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCc
Confidence 35678999999 89888876668999998877765
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.07 E-value=12 Score=37.39 Aligned_cols=135 Identities=11% Similarity=0.048 Sum_probs=77.9
Q ss_pred CEEEEEEecCCCcEEEEEEeCCCcEEEEE-c----------CC-ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeE
Q 001343 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L----------SG-RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520 (1096)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~----------~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (1096)
...-++.++... +++.|+.++ ++|-. . .+ ....... -..|..++|+. + .++. ..++.+
T Consensus 38 ~~~LLAVsn~~G--Ll~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~--d--~l~v-~~~~~l 107 (381)
T d1xipa_ 38 SLQNLDISNSKS--LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHG--D--QVLV-STRNAL 107 (381)
T ss_dssp CCBCEEEETTTT--EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEET--T--EEEE-EESSEE
T ss_pred ccceEEEeCCCC--EEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeC--C--EEEE-EeCCCE
Confidence 355677877666 777777775 45554 1 11 1111111 22578888842 3 4444 355678
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC----ccceEEEEEeCC
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----KKSNGVVQFDTT 596 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~~~~ 596 (1096)
..++...............++..+.++|.. ++.... ++.+.++++..++......+-. .....+++|++.
T Consensus 108 ~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~--~~l~~~----~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~k 181 (381)
T d1xipa_ 108 YSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNS----VNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDR 181 (381)
T ss_dssp EEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEET----TSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTS
T ss_pred EEEEeeccccccccccccccccceecCCce--eEEEec----CCCEEEEEeccCccccccCCcceEEecCCceEEEEeCC
Confidence 888877655555544455678888887753 444443 7889999998876543322110 113555666666
Q ss_pred CCEEEEE
Q 001343 597 QNHFLAV 603 (1096)
Q Consensus 597 ~~~l~~~ 603 (1096)
|..++++
T Consensus 182 gkq~v~~ 188 (381)
T d1xipa_ 182 SFQSFAW 188 (381)
T ss_dssp CEEEEEE
T ss_pred cEEEEEe
Confidence 6656555
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.64 E-value=16 Score=34.81 Aligned_cols=96 Identities=9% Similarity=-0.013 Sum_probs=48.4
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEEEEeecCCCCCCccEEEE
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1096)
...+..||..+.+....-............. ..+..++.|+.+ .....+|..+.+.......... .....+.
T Consensus 163 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--r~~~~~~ 239 (288)
T d1zgka1 163 LNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR--RSALGIT 239 (288)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC--CBSCEEE
T ss_pred cceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccCc--ccceEEE
Confidence 3567888887765443221111111112222 234555555433 3567788877665443222221 2222222
Q ss_pred eCCCCEEEEEECCCc-----EEEEEcCCC
Q 001343 638 SKEGNLLAVTTADNG-----FKILANAIG 661 (1096)
Q Consensus 638 s~~~~~l~~~~~dg~-----i~iwd~~~~ 661 (1096)
..++++++.|+.++. +.+||+.++
T Consensus 240 ~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 240 VHQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp EETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred EECCEEEEEecCCCCeecceEEEEECCCC
Confidence 336778888775543 677887765
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.20 E-value=21 Score=33.74 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=51.4
Q ss_pred ceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCC-----cEEEEecCCCceeEEEccccccCCCccCC
Q 001343 952 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG-----NIGVFDADTLRLRCYIAPSTYLSPSVLNG 1026 (1096)
Q Consensus 952 ~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~h 1026 (1096)
..+..||..+.+....-... ...........++++++.|+.++ ....+|..+.+.... .. .|..
T Consensus 164 ~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~-~~---~p~~---- 232 (288)
T d1zgka1 164 NSAECYYPERNEWRMITAMN---TIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV-AP---MKHR---- 232 (288)
T ss_dssp CCEEEEETTTTEEEECCCCS---SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-CC---CSSC----
T ss_pred ceEEEeeccccccccccccc---cccccccccceeeeEEEecCccccccccceeeeeecceeeecc-cC---ccCc----
Confidence 45788888766533221111 11111222334666766666543 456777776653322 11 1111
Q ss_pred CccccceEEEecCCCCceEEEEeeCCc-----EEEEccCCCCCcccc
Q 001343 1027 SQTVYPLVVAAHPLEPNQFAIGLTDGS-----VKVMEPSESEGKWGV 1068 (1096)
Q Consensus 1027 ~~~v~s~~l~~s~~d~~~l~s~~~dg~-----i~vW~v~~~~~~~~~ 1068 (1096)
.... +++.. ++++++.|+.++. |.+||+.+. +|..
T Consensus 233 --r~~~-~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~--~W~~ 272 (288)
T d1zgka1 233 --RSAL-GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD--TWSE 272 (288)
T ss_dssp --CBSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT--EEEE
T ss_pred --ccce-EEEEE--CCEEEEEecCCCCeecceEEEEECCCC--EEEE
Confidence 1111 23332 6888888886653 889999885 4554
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=81.58 E-value=22 Score=33.55 Aligned_cols=221 Identities=10% Similarity=0.054 Sum_probs=101.0
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...|..|+--.. +.+|. .||.|..|-......+-. -......|..|+-- +...++
T Consensus 25 ~~~i~~va~G~~--h~~al--~dG~v~~wG~N~~GQlG~-------------------~~~~~~~v~~v~~G-~~~~~a- 79 (273)
T d1jtdb_ 25 QSGVDAIAGGYF--HGLAL--KGGKVLGWGANLNGQLTM-------------------PAATQSGVDAIAAG-NYHSLA- 79 (273)
T ss_dssp SSSEEEEEECSS--EEEEE--ETTEEEEEECCTTSTTSC-------------------CGGGGSCCCEEEEC-SSEEEE-
T ss_pred CCCcEEEEccCC--EEEEE--ECCEEEEEeCCCCCceee-------------------eecccccceEEecC-CCceee-
Confidence 345777766332 22333 489999997655433321 00012234444431 122222
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEe
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~ 502 (1096)
-.|+.+..|.......... .......+..++.... ..+.. .|+.+..|. ...............|..++-
T Consensus 80 -l~dg~v~~wG~~~~gq~~~---~~~~~~~~~~i~~~~~----~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~ 150 (273)
T d1jtdb_ 80 -LKDGEVIAWGGNEDGQTTV---PAEARSGVDAIAAGAW----ASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDG 150 (273)
T ss_dssp -EETTEEEEEECCTTSTTCC---CGGGGSSCCEEEEETT----EEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEE
T ss_pred -eeeeeeeccCCCcceeecc---ccccccceeEEeeecc----ccccc-ccccceecccCCCCceeeeccCCceEEEEec
Confidence 2478999997643222211 1112233444444332 22222 489999997 222211111112234544432
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC-CeeeEEEc
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYA 581 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~ 581 (1096)
.. ..+ ....++.+..|-................|..++..... .+.. . ++.|+.|=... ++.-....
T Consensus 151 ---~~-~~~-~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~h--~~~l-~----dG~v~~WG~n~~Gql~~~~~ 218 (273)
T d1jtdb_ 151 ---GV-YTA-LAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH--SLAL-K----DGKVIAWGDNRYKQTTVPTE 218 (273)
T ss_dssp ---CS-SEE-EEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSSE--EEEE-E----TTEEEEEECCTTSTTCCCGG
T ss_pred ---cc-eee-eeecccceeEeecccCCcccccccccCCccceecccee--eEEE-e----cCcEEEcCCCCCCccCCCcc
Confidence 11 223 33457889899765443332222333467777654332 2222 2 67888885432 22111111
Q ss_pred CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
. .. .+..++-... ..++. .||.|+.|-..
T Consensus 219 ~-~~-~v~~I~~G~~-~~~~l--~~g~v~~WG~~ 247 (273)
T d1jtdb_ 219 A-LS-GVSAIASGEW-YSLAL--KNGKVIAWGSS 247 (273)
T ss_dssp G-GS-SCCEEEECSS-CEEEE--ETTEEEEESTT
T ss_pred C-CC-CcEEEEeCcc-eEEEE--ECCEEEEECCC
Confidence 1 11 3444543322 23332 48999999643
|