Citrus Sinensis ID: 001345

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------

MEPSGQREHSPDDFEEIRPKTKRSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQEEKEAVTVRRRGRPRKKRNIEGKRLFDEHSSSEEEDSISASDQEVAQDEDDKQEEEEEDEAPLIHSIRSSAKLRALRVSREDNKLQTKTTSGRTSGASG

ccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccEEcHHHcccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHEcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHcccHEEccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccEcccccHHHHHccEEEEccccccccccccccccccc

mepsgqrehspddfeeirpktkrsrasegtaaSAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAkyylqgesldeidvDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVEcqngplfdkVLFDKCMDYIialsctpprVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEkkkrvegprvesLNKRLSMTHKNITDLEDMMRKIFTGLFVhryrdidpnirmSCIQSLGVWILSYPSFFLQDLYLKYLGwtlndksasvRKSSVLALQNLyevddnvptlglFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRhqllpdddlgplydlliddppEIRRAIGELVYDHLIAQkfnssqsglkgkdndsseVHLGRMLQILRefsadpilsiyVIDDVWEYMKAMKDWKCIISMlldenplidlndddaTNLIRLLSASVKKAVgerivpasdnrkpyynKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELqlskavpieSLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEyflnspseveegsrvGNQLACRVCTILAEMWCLFrmtnfsstklsrlgycpdipVLQKFWKLCEQQLnisdetededvNKEYIEETNRDAVMIAAAKLIAidsvpkeylgpeiISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVeisrsddkslteKSFVECKELSsrlsgtyvgaarnkhRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHfvsklptpdiLDILKDVQirtdnvnmdedpsgwrpFKSFVETLREKYtknegiqeEKEAVTVRrrgrprkkrniegkrlfdehssseeedsisasdqevaqdeddkqeeeeedeaplihSIRSSAKLRALRVsrednklqtkttsgrtsgasg

mepsgqrehspddfeeirpktkrsrasegtaasaqsIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLarrgevedyqsskrkeLKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQREttqrqlnaekkkrvegprveslnkrlsmthknitdleDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQnlyevddnvptLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKfnssqsglkgkdNDSSEVHLGRMLQILrefsadpilSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSasvkkavgerivpasdnrkpyynkaqkevfennkreiTRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSaesqgelqdsaRKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLnisdetededvNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHaveisrsddkslteksfveckelssrlsgtyvgaarnkhrsdiLKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDnvnmdedpsgwrpFKSFVETLREkytknegiqeekeavtvrrrgrprkkrniegkrlfdehssseeedsisasdqevaQDEDDKQeeeeedeaplihsirssaklralrvsrednklqtkttsgrtsgasg

MEPSGQREHSPDDFEEIRPKTKRSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIdvddvvvALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQllpdddlgplydlliddppEIRRAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDkliaklksaikaVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFlllnlylylAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQEEKEAVTVrrrgrprkkrNIEGKRLFdehssseeedsisasdqevaqdeddkqeeeeedeAPLIHSIRSSAKLRALRVSREDNKLQTKTTSGRTSGASG

************************************IELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVE*********LKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLG***********************************NITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKF*****************HLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIV***********************EITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCS******************EDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSP*****GSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNIS*********KEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVE**************VECKEL**RLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVN*******WRPFKSFVE****************************************************************************************************************

****************************************LIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQ*******************************HKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLI**********************LGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVG**************************REITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHS**************LLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWC****************YCPDIPVLQKFWKLCEQQL**********************AVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRH*****************VECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQ***************RPFKSFVET***************************************************************************************************************

**********************************QSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQ********************VESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSS**********SSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNS**********GNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQEEKEAVTVRRRGRPRKKRNIEGKRL*************************************LIHSIRSSAKLRALRVSR*******************

**************************************LSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKF************DSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYT*******************************************************************PLIH***S**K***************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MEPSGQREHSPDDFEEIRPKTKRSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQEEKEAVTVRRRGRPRKKRNIEGKRLFDEHSSSEEEDSxxxxxxxxxxxxxxxxxxxxxDEAPLIHSIRSSAKLRALRVSREDNKLQTKTTSGRTSGASG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1096	2.2.26 [Sep-21-2011]
Q8WVM7		1258	Cohesin subunit SA-1 OS=H	yes	no	0.864	0.752	0.253	6e-76
Q9D3E6		1258	Cohesin subunit SA-1 OS=M	yes	no	0.864	0.752	0.253	1e-75
Q9UJ98		1225	Cohesin subunit SA-3 OS=H	no	no	0.792	0.709	0.259	5e-71
Q9DGN1		1265	Cohesin subunit SA-1 OS=X	N/A	no	0.903	0.782	0.250	7e-71
Q8N3U4		1231	Cohesin subunit SA-2 OS=H	no	no	0.813	0.724	0.250	3e-69
O35638		1231	Cohesin subunit SA-2 OS=M	no	no	0.810	0.721	0.250	1e-68
Q99M76		1256	Cohesin subunit SA-3 OS=R	no	no	0.860	0.750	0.261	1e-65
Q9DGN0		1194	Cohesin subunit SA-2 OS=X	N/A	no	0.801	0.735	0.251	8e-65
O70576		1240	Cohesin subunit SA-3 OS=M	no	no	0.883	0.780	0.253	1e-64
O13816		962	Cohesin subunit psc3 OS=S	yes	no	0.497	0.566	0.240	2e-40

>sp\|Q8WVM7\|STAG1_HUMAN Cohesin subunit SA-1 OS=Homo sapiens GN=STAG1 PE=1 SV=3	Back alignment and function desciption

 Score =  286 bits (732), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 254/1001 (25%), Positives = 461/1001 (46%), Gaps = 54/1001 (5%)

Query: 23   RSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEAC 82
            R RA+     + +   ++L EV+K     +  VV  W+E Y++D   A+ +L+    +  
Sbjct: 69   RGRANGHPQQNGEGEPVTLFEVVKLGKSAMQSVVDDWIESYKQDRDIALLDLINFFIQCS 128

Query: 83   GAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVE 142
            G +  ++ E    +   +++  +         +   +    + K F+ N   F   L+ +
Sbjct: 129  GCRGTVRIEMFRNMQNAEIIRKMTEEFDEDSGDYPLTMPGPQWKKFRSNFCEFIGVLIRQ 188

Query: 143  CQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQ 202
            CQ   ++D+ + D  +  +  LS +  R +R  ++L  ++L+T+ ++VA  L   ++ TQ
Sbjct: 189  CQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSIHQDNTQ 248

Query: 203  RQLNAEKKKRV---EGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIR 259
            RQ  AE+ K +      R+E L ++     +N  ++E+MM  IF G+FVHRYRD    IR
Sbjct: 249  RQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNSIFKGIFVHRYRDAIAEIR 308

Query: 260  MSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLG 319
              CI+ +GVW+  Y   FL D YLKY+GWTL+D+   VR   + ALQ+LY   +  P L 
Sbjct: 309  AICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKCLKALQSLYTNRELFPKLE 368

Query: 320  LFTERFSNRMIELADDIDVSVAVCAIGLVKQLLR--HQLLPDDDLGPLYDLLIDDPPEIR 377
            LFT RF +R++ +  D +  VAV AI LV  +L    + L ++D   +Y L+      + 
Sbjct: 369  LFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLILHGSEEALSNEDCENVYHLVYSAHRPVA 428

Query: 378  RAIGELVYDHLIAQKFNSSQSGL-KGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDV 436
             A GE ++  L ++    ++  L K +  +S   +L RML +    S     + Y++D +
Sbjct: 429  VAAGEFLHKKLFSRHDPQAEEALAKRRGRNSPNGNLIRMLVLFFLESELHEHAAYLVDSL 488

Query: 437  WEYMKA-MKDWKCIISMLLDENPLID---LNDDDATNLIRLLSASVKKAVGERIVPASDN 492
            WE  +  +KDW+C+  +LL+E P+     ++D   + LI L+  ++++A           
Sbjct: 489  WESSQELLKDWECMTELLLEE-PVQGEEAMSDRQESALIELMVCTIRQAAEAHPPVGRGT 547

Query: 493  RKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLK 552
             K      +++   +++ ++T   +   P LL K+ AD  KV +L+ I  +  LE+YS  
Sbjct: 548  GKRVLTAKERKTQIDDRNKLTEHFIITLPMLLSKYSADAEKVANLLQIPQYFDLEIYSTG 607

Query: 553  RDEKSFETILQLVNDAFFKHGEKEALRSCVKAIK-FCSAESQGELQ-DSARKNLKDVEDK 610
            R EK  + +L+ +     KH E + L +C K     CS E   + + D AR  L    D+
Sbjct: 608  RMEKHLDALLKQIKFVVEKHVESDVLEACSKTYSILCSEEYTIQNRVDIARSQLI---DE 664

Query: 611  LIAKLKSAIKAVL------DGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHT-- 662
             + +   +++ +L      D DD Y++L  LKRL     +  +    L+ +   +L T  
Sbjct: 665  FVDRFNHSVEDLLQEGEEADDDDIYNVLSTLKRLTSFHNAHDLTKWDLFGNCYRLLKTGI 724

Query: 663  -FRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSP 721
                +  ++V   L   +  + W L  I +     E     LL+ R T+   L       
Sbjct: 725  EHGAMPEQIVVQALQCSHYSILWQLVKITDGSPSKE----DLLVLRKTVKSFLAVCQQCL 780

Query: 722  SEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQ 781
            S V   + V  Q    +C +L  M    ++       L  L + PD  +  +        
Sbjct: 781  SNV--NTPVKEQAFMLLCDLL--MIFSHQLMTGGREGLQPLVFNPDTGLQSELLSFVMDH 836

Query: 782  LNISDETEDEDVNKEYIEETN-------RDAVMIAAAKLIAIDSVPKEYLGPEIISHFVM 834
            + I  + E++ +  +  +E N       R  ++ A +KLI  D V   +   +I  H++ 
Sbjct: 837  VFIDQDEENQSMEGDEEDEANKIEALHKRRNLLAAFSKLIIYDIVDM-HAAADIFKHYMK 895

Query: 835  HGTNVAEIVKHLITVLKKKDE-DVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECK 893
            +  +  +I+K  ++  ++ D+   +   + +L++ +     E   + D++    S +  K
Sbjct: 896  YYNDYGDIIKETLSKTRQIDKIQCAKTLILSLQQLFNELVQEQGPNLDRTSAHVSGI--K 953

Query: 894  ELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFL--------DAPKQLSFLECAVLHFV 945
            EL+ R + T+ G  + K R  +    K+GI++AF           P  L+FLE  +  F 
Sbjct: 954  ELARRFALTF-GLDQIKTREAVATLHKDGIEFAFKYQNQKGQEYPPPNLAFLE-VLSEFS 1011

Query: 946  SKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETL 986
            SKL   D   +   ++       M+     W P  S+  +L
Sbjct: 1012 SKLLRQDKKTVHSYLEKFLTEQMMERREDVWLPLISYRNSL 1052

Component of cohesin complex, a complex required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.
Homo sapiens (taxid: 9606)

>sp\|Q9D3E6\|STAG1_MOUSE Cohesin subunit SA-1 OS=Mus musculus GN=Stag1 PE=1 SV=3	Back alignment and function description

>sp\|Q9UJ98\|STAG3_HUMAN Cohesin subunit SA-3 OS=Homo sapiens GN=STAG3 PE=1 SV=2	Back alignment and function description

>sp\|Q9DGN1\|STAG1_XENLA Cohesin subunit SA-1 OS=Xenopus laevis GN=stag1 PE=1 SV=1	Back alignment and function description

>sp\|Q8N3U4\|STAG2_HUMAN Cohesin subunit SA-2 OS=Homo sapiens GN=STAG2 PE=1 SV=3	Back alignment and function description

>sp\|O35638\|STAG2_MOUSE Cohesin subunit SA-2 OS=Mus musculus GN=Stag2 PE=1 SV=3	Back alignment and function description

>sp\|Q99M76\|STAG3_RAT Cohesin subunit SA-3 OS=Rattus norvegicus GN=Stag3 PE=2 SV=1	Back alignment and function description

>sp\|Q9DGN0\|STAG2_XENLA Cohesin subunit SA-2 OS=Xenopus laevis GN=stag2 PE=1 SV=1	Back alignment and function description

>sp\|O70576\|STAG3_MOUSE Cohesin subunit SA-3 OS=Mus musculus GN=Stag3 PE=1 SV=2	Back alignment and function description

>sp\|O13816\|SCC3_SCHPO Cohesin subunit psc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psc3 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1096
296086648		1144	unnamed protein product [Vitis vinifera]	0.996	0.954	0.775	0.0
359479838		1143	PREDICTED: cohesin subunit SA-1-like [Vi	0.995	0.954	0.775	0.0
255559372		1106	stromal antigen, putative [Ricinus commu	0.970	0.962	0.787	0.0
147777089		1616	hypothetical protein VITISV_016664 [Viti	0.975	0.661	0.746	0.0
449435958		1866	PREDICTED: cohesin subunit SA-1-like [Cu	0.989	0.580	0.741	0.0
449516549		1123	PREDICTED: cohesin subunit SA-1-like, pa	0.980	0.957	0.747	0.0
356505485		1126	PREDICTED: cohesin subunit SA-1-like [Gl	0.988	0.961	0.727	0.0
297824911		1085	sister-chromatide cohesion protein 3 [Ar	0.953	0.963	0.698	0.0
18407498		1098	cohesin complex subunit SA-1/2 [Arabidop	0.960	0.959	0.684	0.0
21537070		1098	putative sister-chromatide cohesion prot	0.960	0.959	0.684	0.0

>gi\|296086648\|emb\|CBI32283.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1704 bits (4414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 862/1111 (77%), Positives = 986/1111 (88%), Gaps = 19/1111 (1%)

Query: 2    EPSGQ------REHSPDDFEEIRPKTKRSRASEGTAASAQSIELSLIEVIKGNGKLIPQV 55
            EPS Q      RE S D+F E R + KR+R +EG++ +A+  + SLIEVIKGNGKLIPQV
Sbjct: 37   EPSDQSPSEADREGSVDEFVEPRARAKRNR-TEGSSTAAKKFDQSLIEVIKGNGKLIPQV 95

Query: 56   VKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVE 115
            VKLWVE+YEKD KPA+ ELL MLFEACGAKY+L+ E LDE DVDDVVVALVNLARRGE E
Sbjct: 96   VKLWVEQYEKDPKPAMVELLMMLFEACGAKYHLREELLDETDVDDVVVALVNLARRGEAE 155

Query: 116  DYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQV 175
            DYQSSK+KE KNFKDNLVSFWDNLV+ECQNGPLFD+VLFDKC+DYIIALSCTPPRVYRQV
Sbjct: 156  DYQSSKKKEFKNFKDNLVSFWDNLVIECQNGPLFDQVLFDKCVDYIIALSCTPPRVYRQV 215

Query: 176  ASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDL 235
            ASLMGLQLVTSFI+VAKMLGAQRETTQRQLNAEKKKR EGPRVESLNKRLS TH+ IT +
Sbjct: 216  ASLMGLQLVTSFITVAKMLGAQRETTQRQLNAEKKKRTEGPRVESLNKRLSTTHEKITVI 275

Query: 236  EDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSA 295
            E+MMRKIFTGLFVHRYRDID +IRMSCIQSLGVWI+SYPS FLQDLYLKYLGWTLNDKSA
Sbjct: 276  EEMMRKIFTGLFVHRYRDIDQDIRMSCIQSLGVWIISYPSLFLQDLYLKYLGWTLNDKSA 335

Query: 296  SVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 355
             VRK+S+LALQNLY+VDDNVP+LGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ
Sbjct: 336  GVRKASILALQNLYDVDDNVPSLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 395

Query: 356  LLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRM 415
            LL DDDLGPLYDLLIDD  EIR AIG LVYDHLIAQKFNSSQS  KG D DSSEVHLGRM
Sbjct: 396  LLADDDLGPLYDLLIDDSTEIRHAIGALVYDHLIAQKFNSSQSHAKGDDGDSSEVHLGRM 455

Query: 416  LQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLS 475
            LQILREFSADPILSIYVIDDVWEYM AMKDWKCIISMLLDENPLI+L D+DATNLIRLL 
Sbjct: 456  LQILREFSADPILSIYVIDDVWEYMNAMKDWKCIISMLLDENPLIELTDEDATNLIRLLC 515

Query: 476  ASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVP 535
            ASVKKAVGERIVPA+DNRK YYNKAQKE+FE+N+R+IT AMMKNY +LLRKFMADKAKVP
Sbjct: 516  ASVKKAVGERIVPATDNRKQYYNKAQKEIFEHNRRDITVAMMKNYSQLLRKFMADKAKVP 575

Query: 536  SLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGE 595
            SLI+I++HM LELYSLKR E++F+T+LQL+ +AFFKHGEK+ALRSCVKAI FCS+E QGE
Sbjct: 576  SLIEIILHMNLELYSLKRQEQNFKTLLQLMREAFFKHGEKDALRSCVKAINFCSSECQGE 635

Query: 596  LQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYED 655
            L+D A+  LK++ED+LIAKLK+AIK V DGDDEYSLLVNLKRLYELQLS++VPIESLYED
Sbjct: 636  LKDFAQNKLKELEDELIAKLKTAIKEVADGDDEYSLLVNLKRLYELQLSRSVPIESLYED 695

Query: 656  LVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELE 715
            +VMIL + +++D+EVVSFLL N+ L++AW LH+IIN++TVSE SL+SLL KR TLFE+LE
Sbjct: 696  MVMILKSSKSMDDEVVSFLLHNMSLHVAWCLHAIINSDTVSEESLSSLLSKRTTLFEQLE 755

Query: 716  YFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFW 775
            +FL + +EV+E  +  NQ ACRVC ILA++WCLF+ T FSSTKL  LGYCPD  VLQKFW
Sbjct: 756  HFLYAHTEVQEEGKRANQPACRVCIILAQVWCLFKKTKFSSTKLESLGYCPDSSVLQKFW 815

Query: 776  KLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMH 835
            KLCEQQLNISDETE++DVN+EY+EETNRDAVMIAAA L+A D VPKEYLGPEIISHFVMH
Sbjct: 816  KLCEQQLNISDETEEDDVNQEYVEETNRDAVMIAAAMLVATDVVPKEYLGPEIISHFVMH 875

Query: 836  GTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKEL 895
            GT++AEIVK+LI VLKKKD+DV  IFLEAL+RAY RH VE+SRSDD SL  KS  +CK+L
Sbjct: 876  GTSIAEIVKNLIAVLKKKDDDVPNIFLEALRRAYHRHLVELSRSDDTSLASKSVKDCKDL 935

Query: 896  SSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILD 955
            ++RLS T++GAARNKHR DIL+ VK+GIDYAF+DAPKQLSFLE AVLHFVS+LPT D+L+
Sbjct: 936  AARLSTTFMGAARNKHRLDILRIVKDGIDYAFVDAPKQLSFLEIAVLHFVSRLPTSDVLE 995

Query: 956  ILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQEEKEAVTVRRRGRPRKKR 1015
            ILKDVQ RT+NVN DEDPSGWRP+ +F+++LREKY+KN+G Q+EKE  +VRRRGRPRK+R
Sbjct: 996  ILKDVQKRTENVNTDEDPSGWRPYYTFIDSLREKYSKNDGFQDEKEGTSVRRRGRPRKRR 1055

Query: 1016 NIEGKRLFDEHSSSEEEDSISASDQEVAQDEDDKQEEEEEDEAPLIHSIRSSAKLRALRV 1075
            NI+GK+LFD+HSSS EEDSISASD++ A+D++++Q EEEE+EAPLI SIRSSAKLR+LRV
Sbjct: 1056 NIQGKKLFDDHSSS-EEDSISASDED-ARDDEERQGEEEEEEAPLIQSIRSSAKLRSLRV 1113

Query: 1076 SREDNKLQTK----------TTSGRTSGASG 1096
            SRE+NK  T             + RTSGAS 
Sbjct: 1114 SREENKGPTNPGDSGRATDAIAASRTSGASS 1144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359479838\|ref\|XP_002270509.2\| PREDICTED: cohesin subunit SA-1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255559372\|ref\|XP_002520706.1\| stromal antigen, putative [Ricinus communis] gi\|223540091\|gb\|EEF41668.1\| stromal antigen, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|147777089\|emb\|CAN67841.1\| hypothetical protein VITISV_016664 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449435958\|ref\|XP_004135761.1\| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449516549\|ref\|XP_004165309.1\| PREDICTED: cohesin subunit SA-1-like, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356505485\|ref\|XP_003521521.1\| PREDICTED: cohesin subunit SA-1-like [Glycine max]	Back alignment and taxonomy information

>gi\|297824911\|ref\|XP_002880338.1\| sister-chromatide cohesion protein 3 [Arabidopsis lyrata subsp. lyrata] gi\|297326177\|gb\|EFH56597.1\| sister-chromatide cohesion protein 3 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|18407498|ref|NP_566119.1| cohesin complex subunit SA-1/2 [Arabidopsis thaliana] gi|5123720|emb|CAB45374.1| stromalin protein [Arabidopsis thaliana] gi|17380918|gb|AAL36271.1| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|20197313|gb|AAC63652.2| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|20197564|gb|AAM15132.1| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|20258987|gb|AAM14209.1| putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|330255826|gb|AEC10920.1| cohesin complex subunit SA-1/2 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|21537070\|gb\|AAM61411.1\| putative sister-chromatide cohesion protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1096
TAIR\|locus:2043318		1098	SCC3 "sister-chromatid cohesio	0.961	0.959	0.635	0.0
UNIPROTKB\|F1MC39		1258	STAG1 "Uncharacterized protein	0.813	0.709	0.256	3.8e-73
UNIPROTKB\|F1P9C8		1258	STAG1 "Uncharacterized protein	0.813	0.709	0.256	3.8e-73
UNIPROTKB\|Q6P275		1221	STAG1 "STAG1 protein" [Homo sa	0.812	0.728	0.256	6.8e-73
UNIPROTKB\|Q8WVM7		1258	STAG1 "Cohesin subunit SA-1" [	0.812	0.707	0.256	8e-73
RGD\|1310744		1258	Stag1 "stromal antigen 1" [Rat	0.812	0.707	0.256	8e-73
MGI\|MGI:1098658		1258	Stag1 "stromal antigen 1" [Mus	0.812	0.707	0.256	1.7e-72
UNIPROTKB\|F1NYY6		1273	STAG1 "Uncharacterized protein	0.812	0.699	0.256	2.3e-72
UNIPROTKB\|Q9DGN1		1265	stag1 "Cohesin subunit SA-1" [	0.842	0.729	0.243	1.4e-69
UNIPROTKB\|E1B9B0		1284	STAG3 "Uncharacterized protein	0.813	0.694	0.257	7.4e-68

TAIR\|locus:2043318 SCC3 "sister-chromatid cohesion protein 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3455 (1221.3 bits), Expect = 0., P = 0.
 Identities = 683/1075 (63%), Positives = 817/1075 (76%)

Query:     4 SGQREHSPDDFEEIRPKTKRSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERY 63
             S Q E   DDF+E RPK KRSR    T    Q+    LIEV+KGNG LI + VK+WVERY
Sbjct:    40 SDQIELDDDDFQETRPKPKRSR----THPPQQN----LIEVVKGNGDLISKAVKIWVERY 91

Query:    64 EKDAKPAIAELLTMLFEACGAKYYLQGESLDEIXXXXXXXALVNLARRGEVEDYQSSKRK 123
             E     A  ELL+MLF+ACGAKY ++ + LDE        +LVNLAR GE+EDYQSS++K
Sbjct:    92 EDSPSLATTELLSMLFQACGAKYSIKDDLLDETDVDDVVVSLVNLARAGELEDYQSSRKK 151

Query:   124 ELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQL 183
             ELKNFK+NLVSFW+NL++ECQNGPLFD+VLFDKCMDYIIALSCTPPRVYRQ A+LMGLQL
Sbjct:   152 ELKNFKENLVSFWNNLIIECQNGPLFDRVLFDKCMDYIIALSCTPPRVYRQTATLMGLQL 211

Query:   184 VTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIF 243
             VTSFISVA  LG+QRETTQRQLNAE KKR +GPRV+SLNKRLS+TH+ IT LEDMMRKIF
Sbjct:   212 VTSFISVANTLGSQRETTQRQLNAESKKRADGPRVDSLNKRLSVTHEQITTLEDMMRKIF 271

Query:   244 TGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVL 303
             TGLFVHRYRDID +IRMSCIQSLG+WILSYPS FLQDLYLKYLGWTLNDK+A VRK+S+L
Sbjct:   272 TGLFVHRYRDIDNDIRMSCIQSLGIWILSYPSLFLQDLYLKYLGWTLNDKNAGVRKASLL 331

Query:   304 ALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQXXXXXXXX 363
             ALQ LYE+D+NVPTLGLFT+RFSNRMIE+ADD+D+S AVCAIGLVKQLLRHQ        
Sbjct:   332 ALQKLYEMDENVPTLGLFTQRFSNRMIEMADDVDMSAAVCAIGLVKQLLRHQLIPDDDLG 391

Query:   364 XXXXXXXXXXXEIRRAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFS 423
                        EIRRAIGELVYDHLIAQKFNSS S L G D+ SSE+H+ RMLQILREFS
Sbjct:   392 PLYDLLIDQPQEIRRAIGELVYDHLIAQKFNSSPSSLTGHDDSSSEIHIFRMLQILREFS 451

Query:   424 ADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLI-DLNDDDATNLIRLLSASVKKAV 482
              DPIL +YVIDDVWEYMKAMKDWKCIISMLLD+NP      D+D+TNLIRLL  S++KAV
Sbjct:   452 TDPILCVYVIDDVWEYMKAMKDWKCIISMLLDQNPRTGSTTDEDSTNLIRLLFVSIRKAV 511

Query:   483 GERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVM 542
             GE+I+P++DNRK Y++KAQ+E+FENN+++IT AMMKNYP+LLRKFMADKAKV SL++I++
Sbjct:   512 GEKIIPSTDNRKQYHSKAQREIFENNRKDITVAMMKNYPQLLRKFMADKAKVSSLVEIII 571

Query:   543 HMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARK 602
              MKLELYSLKR E+SF+  ++L+ DAFFKHGEKEALRSCVKAI FC++ES+GELQD +R 
Sbjct:   572 FMKLELYSLKRQEQSFKAAVRLIKDAFFKHGEKEALRSCVKAITFCASESKGELQDFSRG 631

Query:   603 NLKDVEDXXXXXXXXXXXXVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHT 662
              LKD+ED            V DG+DEYSLLVNLKRLYELQLSK V +ES+++++ + LH 
Sbjct:   632 KLKDLEDELLDKITSAIREVKDGNDEYSLLVNLKRLYELQLSKPVLVESMFDEIALTLHN 691

Query:   663 FRNLDNEVVSFXXXXXXXXXAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPS 722
             FRNLD EV+ F         AW LHSIIN E +SEASL+SL+ KR+TLFEEL YFLN   
Sbjct:   692 FRNLDEEVICFLLLNMHMYLAWYLHSIINCEAISEASLSSLISKRDTLFEELSYFLNG-- 749

Query:   723 EVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQL 782
              +EE  + GNQL+ R+C ILAE WCLFR +N+ S KL RLGYCPD   L+KFWKLC +  
Sbjct:   750 -IEESKKYGNQLSNRICAILAETWCLFRKSNYDSGKLERLGYCPDSVFLEKFWKLCAEMF 808

Query:   783 NISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEI 842
             N SDET++ED NKEYIEETNRD  +IAA KL+A D VPK+YLGPEIISH  MHG  V  I
Sbjct:   809 NTSDETDEEDENKEYIEETNRDVSVIAACKLVASDVVPKDYLGPEIISHLGMHGPGVTGI 868

Query:   843 VKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGT 902
             +K+LIT L+KK++D+S I+LE+LKRAY R++ E+S   ++S  +K   E +EL+  LSG 
Sbjct:   869 IKNLITFLRKKEDDISNIYLESLKRAYHRYSSELSSGREESRVDKCLEEWRELAGGLSGM 928

Query:   903 YVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQI 962
             Y+GAARNK+R +IL  VKEG+++AF DAPKQL FLE A+L F ++L   DI+DI KDVQ 
Sbjct:   929 YIGAARNKYRLEILSVVKEGVEFAFRDAPKQLLFLEVAILPFATRLSVSDIIDIKKDVQG 988

Query:   963 RTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQEEKEAVTVXXXXXXXXXXNIEGKRL 1022
             R  +VN DEDPSGWRP  +F+ETL EK  KNE +Q++KEA  V            E KRL
Sbjct:   989 RIVHVNTDEDPSGWRPCFTFLETLEEKCLKNEDLQDDKEAANVRRRGRPRKRPETERKRL 1048

Query:  1023 FXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLIHSIRSSAKLRALRVSR 1077
             F                                  APLI +IRS+A+ +AL+  R
Sbjct:  1049 FDEQSGSDEDESISGGSDREDKLDED---------APLIETIRSAARRKALKGER 1094

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005694 "chromosome" evidence=IDA

GO:0051455 "attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation" evidence=IMP

GO:0051754 "meiotic sister chromatid cohesion, centromeric" evidence=IMP

GO:0000003 "reproduction" evidence=RCA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006325 "chromatin organization" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

UNIPROTKB\|F1MC39 STAG1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P9C8 STAG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6P275 STAG1 "STAG1 protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8WVM7 STAG1 "Cohesin subunit SA-1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1310744 Stag1 "stromal antigen 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1098658 Stag1 "stromal antigen 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NYY6 STAG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9DGN1 stag1 "Cohesin subunit SA-1" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B9B0 STAG3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1096
pfam08514		118	pfam08514, STAG, STAG domain	6e-44
COG5537		740	COG5537, IRR1, Cohesin [Cell division and chromoso	6e-25

>gnl\|CDD\|219877 pfam08514, STAG, STAG domain	Back alignment and domain information

 Score =  154 bits (391), Expect = 6e-44
 Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 2/117 (1%)

Query: 112 GEVEDYQ-SSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPR 170
            +  DY   SK  +LK F++NL  F   LV++CQ   L+D  L D  + ++ ALS +  R
Sbjct: 1   EDSGDYPLVSKGPKLKKFRENLCEFLSTLVIQCQYSLLYDDNLMDNLISWLTALSSSQVR 60

Query: 171 VYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGP-RVESLNKRLS 226
            +R  A+L+ L+L+T+  +VA  L   +ETTQ+QL AEKKK  +   RV+SLN +  
Sbjct: 61  PFRHTATLVALKLMTALCNVALELSNSKETTQKQLEAEKKKSRDNRARVDSLNSKRK 117

STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version. Length = 118

>gnl\|CDD\|227824 COG5537, IRR1, Cohesin [Cell division and chromosome partitioning]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1096
KOG2011		1048	consensus Sister chromatid cohesion complex Cohesi	100.0
COG5537		740	IRR1 Cohesin [Cell division and chromosome partiti	100.0
PF08514		118	STAG: STAG domain ; InterPro: IPR013721 STAG domai	99.96
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.08
KOG2011		1048	consensus Sister chromatid cohesion complex Cohesi	96.63
COG5537		740	IRR1 Cohesin [Cell division and chromosome partiti	96.19
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	96.09
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.08
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.21
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	94.96
PRK09687		280	putative lyase; Provisional	94.45
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	94.08
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	93.84
PRK09687		280	putative lyase; Provisional	93.7
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	93.68
KOG0414		1251	consensus Chromosome condensation complex Condensi	92.95
PTZ00429		746	beta-adaptin; Provisional	92.77
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	92.5
PF12830		187	Nipped-B_C: Sister chromatid cohesion C-terminus	92.05
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	91.04
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	90.83
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	90.02
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	87.94
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	87.44
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	86.6
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	86.11
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	85.55
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	85.12
KOG2259		823	consensus Uncharacterized conserved protein [Funct	84.58
KOG2025		892	consensus Chromosome condensation complex Condensi	84.42
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	83.44
PF12333		102	Ipi1_N: Rix1 complex component involved in 60S rib	82.62
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	82.37
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	81.59
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	80.78
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	80.49

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=2.6e-170  Score=1537.98  Aligned_cols=916  Identities=30%  Similarity=0.481  Sum_probs=817.2

Q ss_pred             chhhhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcCCCcccCccccCCCChHHHHHHHHHHHhcCCcc
Q 001345           36 SIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVE  115 (1096)
Q Consensus        36 ~~~~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~eLinfil~~~Gc~~~It~~~~~~~d~~~ii~~l~e~~~~~~~~  115 (1096)
                      .+.++||.+|++++..++++|++|++.|++|++.||++||||||+||||++.||++|++++|..+++..|++.|.++..+
T Consensus        78 ~~~~eLf~~l~~~k~~i~~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~es~  157 (1048)
T KOG2011|consen   78 FDPNELFAILLDSKSPIEELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDERESG  157 (1048)
T ss_pred             cChHHHHHHHHcccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhhhhc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999986667


Q ss_pred             ccc-ccccccchhHHHHHHHHHHHHHHhhcc-CCccchHhHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 001345          116 DYQ-SSKRKELKNFKDNLVSFWDNLVVECQN-GPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKM  193 (1096)
Q Consensus       116 ~y~-~sk~k~~K~Fr~n~~eF~~~Lv~~~~~-~~L~D~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~~  193 (1096)
                      ||| .++||.||+||.|||+|+.+||.+|++ ++|||+++|+++++||+|||+|++|+||||||++||++||+||.||.+
T Consensus       158 DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~  237 (1048)
T KOG2011|consen  158 DYPLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALN  237 (1048)
T ss_pred             cCcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            886 567889999999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHcccCC-CccHHHHHHHHHHHHHhHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhh
Q 001345          194 LGAQRETTQRQLNAEKKKRVE-GPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILS  272 (1096)
Q Consensus       194 l~~~~~~~qrQleaEk~K~~~-~~r~e~l~~~~~e~~~~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~  272 (1096)
                      |+.+.++++||||+|++|.+. +.|+++|..+++++|+++++|++||++||++|||||||||+|+||++||++||.||.+
T Consensus       238 Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~  317 (1048)
T KOG2011|consen  238 LSSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKS  317 (1048)
T ss_pred             HHHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHh
Confidence            999999999999999987654 4599999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHH
Q 001345          273 YPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLL  352 (1096)
Q Consensus       273 yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~  352 (1096)
                      ||++|++++||||+||+|||++++||+.||++|++||.++++.++|++||+|||+|||||| |+|.+|+|.|++|+..+.
T Consensus       318 yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa-drd~~~~Vrav~L~~~~~  396 (1048)
T KOG2011|consen  318 YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA-DRDRNVSVRAVGLVLCLL  396 (1048)
T ss_pred             ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 888888888887777777


Q ss_pred             h--cCCCCCCChhhHHhhhcCCChHHHHHHHHHHHHHHHHhhhcCcccCCCC-CCCCchhhhHhHHHHHHHhccCCCchh
Q 001345          353 R--HQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLKG-KDNDSSEVHLGRMLQILREFSADPILS  429 (1096)
Q Consensus       353 ~--~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~l~~f~~~~~~~  429 (1096)
                      .  .|+|+++||..||.||||.+|++|+|||+|++.++++...+....+++. .....+...+..++.++.++ ..|.++
T Consensus       397 ~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a~~e~~~~~~~~~~~~~~~~l~~lv~~fi~~-~l~~~~  475 (1048)
T KOG2011|consen  397 LSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVANSERVGAEKSLLKAENRELLPLLVSFFEES-ELHQHA  475 (1048)
T ss_pred             HhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccccchhhhccccccccccccchHHHHHHHhhhh-hhhhhH
Confidence            7  6999999999999999999999999999999999998654331111111 11122233344555555554 345678


Q ss_pred             hhHHhhhcc-ccCCCCChHHHHHHHcCCCC--CCCCCchhhHHHHHHHHHHHHHH-hcCCCCCCCCCCCccchhhhhhhh
Q 001345          430 IYVIDDVWE-YMKAMKDWKCIISMLLDENP--LIDLNDDDATNLIRLLSASVKKA-VGERIVPASDNRKPYYNKAQKEVF  505 (1096)
Q Consensus       430 ~ylVDsLwd-~~~~lkDWe~m~~~LL~d~~--~~~L~~~~e~~LieiL~asVrqa-~ge~~~~~~~~Rk~~~~~~~k~~~  505 (1096)
                      +|+||++|+ ....++||+||.++||....  +..+++.+++.|+|+|++++||+ .|++|+++.+++|...+.++.+.+
T Consensus       476 ~ylv~~l~ds~~~~lkDw~c~~s~ll~~~~~~~~~l~~~~~s~lie~m~~sirq~ae~e~~v~~~~n~k~~~S~ke~~~~  555 (1048)
T KOG2011|consen  476 AYLVDSLFDSLDFLLKDWACMTSLLLDKLLPQGQELSSADESTLIEIMLNSIRQSAEGEPPVGRHQNSKNNLSAKEDADL  555 (1048)
T ss_pred             HHHHHHHHHhhHHHhcccHHHHHhhcccccchhhhccchhhHHHHHHHHHHHHHHhcCCCCccccccccccccHHHHHHH
Confidence            999999999 56789999999999998853  34789999999999999999975 589999988888888899999899


Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHhcCccchhHHHhhhhhcchhhhhccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 001345          506 ENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAI  585 (1096)
Q Consensus       506 ~~~~~~iT~~li~~LP~LL~Ky~ad~ekv~~LL~ip~~~dLe~Y~~~r~e~~l~~LL~~i~~~f~kHsd~~VL~~~a~al  585 (1096)
                      .+++.++|+++++.+|+|+.||++|.+++++|++||+||+++.|+.+|++++|.++++++..++.+|.+++|+++|+++|
T Consensus       556 ~e~r~~~t~~~~~~lp~Ll~k~~~d~~k~~nl~~i~~~~~l~~y~~~r~~~~l~a~~~~~~~~~~khle~~~l~sc~~~~  635 (1048)
T KOG2011|consen  556 EEDRPDLTERLIENLPQLLSKYSADEEKSANLHLIPTHFSLEEYSLGRQEEHLRAASQQITDIIEKHLESEVLESCDKPY  635 (1048)
T ss_pred             HHhhhhHHHHHHHHhHHHHhhhhhHHHhhhhHHhhhhhhhHHhhhhHhHHHHHHHHHHHHHHHhhhhccHHHHHHhcchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcchh--hHHHHHHhhHHHHHHHHHHHHHHHHHH-hccCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhh
Q 001345          586 KFCSAESQG--ELQDSARKNLKDVEDKLIAKLKSAIKA-VLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHT  662 (1096)
Q Consensus       586 ~~L~~~~~~--~l~~~a~~~l~~L~d~lv~~l~~~~~~-~~~~~~~~~ll~~L~Rl~~l~~~~~l~~~~l~~~l~~ll~~  662 (1096)
                      +++|.++..  ..+++++.++.++.++..+.....+.. ..+++++|+++++++|++.|++.+++..|++|+.+...++.
T Consensus       636 ~~l~~~els~~~~~di~r~~~~dl~~~~~~~il~~f~~~~~~~~~~~~~l~~lk~~~~~q~~~~~~~~~l~~~l~~~l~e  715 (1048)
T KOG2011|consen  636 EFLCYEELSKITDKDIERSNLYDLFDTKYDKILDIFLLFIRDEDDEYAVLSRLKRLASFQNSIDLLKWDLFKALAESLHE  715 (1048)
T ss_pred             HHHhhHHHhhhHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence            999998443  457888887655555554443333222 33677899999999999999999999999999999999986


Q ss_pred             --cCCCCHHHHHHHHHHHHHHHhhcccccccccCccHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccchhhhhhhHHH
Q 001345          663 --FRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCT  740 (1096)
Q Consensus       663 --~~~l~~e~v~~al~~~~~~l~W~l~~l~~~~~~~~~~l~~L~~~r~~f~~~l~~~L~~~~~~~~~~~~~~~~~c~~~~  740 (1096)
                        .+++|..++..+++++++.+.|.+..+..+..+.++.+..|+++++.++..|..++.-....++  ++++       .
T Consensus       716 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~e~l~~f~~~~~~~~~l~~~~~~~~~~ev~--e~~~-------~  786 (1048)
T KOG2011|consen  716 RINRDPQRCIILFKLQLLGNKLTYDLVKIKNGEVCGAEFLSELRSRSDSMFNLVDEYLEEVNMEVE--EQAV-------R  786 (1048)
T ss_pred             hhccCchhhHHHHHHHHhhhhhhhhhhhhccCCCccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHH--HHHH-------H
Confidence              4678999999999999999999999996567788999999999999999999999976222222  3444       4


Q ss_pred             HHHHHHHHhhccCCCCc--ccccCcccCCHHHHHHHHHH-hhhhcccCCCcchhhhhHHHHHH-hhcHHHHHHHHHHHhh
Q 001345          741 ILAEMWCLFRMTNFSST--KLSRLGYCPDIPVLQKFWKL-CEQQLNISDETEDEDVNKEYIEE-TNRDAVMIAAAKLIAI  816 (1096)
Q Consensus       741 ~l~Dl~~lF~~~~~~~~--~l~~L~y~p~~~~~~~l~~~-~~~~~~~~d~~~d~~~~~e~ie~-~~RR~~La~~cKLi~~  816 (1096)
                      ..||++++|+.+...++  .++|++|.|+..++..+.+| ..++|...++++  ++...+||. |++|+++|+|||||+|
T Consensus       787 ~~~~~Lii~~~~~~~~~~~~~~~~v~k~~~~~~~~l~~f~~~~Vfi~~~~~~--~~~~~~Ie~~~~~r~~~a~~~~li~~  864 (1048)
T KOG2011|consen  787 LGCDRLIIFKVQDMEGKIDGLEPLVFKPDKALVGQLRNFLLDLVFILFTSEN--TNECLKIEQLHKKRKLLASLAKLILE  864 (1048)
T ss_pred             HHhhHHHHhhhhhcccchhccccceechHHHHHHhhhhHHHHHhhhhhcccc--hHHHHHHHHHHHhhhHHhHHHHHHHc
Confidence            45666788888887643  58999999999999999775 456666655433  233457887 5799999999999999


Q ss_pred             CCCCCccccccccccccccCCChHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhHHHHHH
Q 001345          817 DSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKD-EDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKEL  895 (1096)
Q Consensus       817 ~vv~~~~~Aa~i~~hY~k~y~d~gDIiK~tl~k~r~~~-~~~~~~l~~~L~~ly~~~~~~~~~~~~~~~~s~~f~~ikeL  895 (1096)
                      |++||+ +|++|||||++||++||||+|+|++++|+++ .+||+++.++|+++|.                   .++|+|
T Consensus       865 ~~~~~~-~a~~~fK~~~~~~~~~gd~~~~~l~k~r~i~~~~~~~~l~~~l~~~~~-------------------~~~~~l  924 (1048)
T KOG2011|consen  865 NKLPMM-EASDIFKMYEKFYNDYGDIIKETLSKAREIDKSEFAKTVDLSLETLFD-------------------TEIKEL  924 (1048)
T ss_pred             ccccHH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hHHHHH
Confidence            999995 9999999999999999999999999999996 9999999999999996                   689999


Q ss_pred             HhHhhccCCCcccccchHHHHHHHHhhccccccc-------cccccchHHhhHhhhccCCCcccHHHHHHHHHhhccCCC
Q 001345          896 SSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLD-------APKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVN  968 (1096)
Q Consensus       896 ArRfaltf~G~d~~k~R~ai~~lHk~GI~FA~~~-------~P~nL~FLei~L~eFs~kLl~qDk~~vl~~l~~~~~~~~  968 (1096)
                      |+|||++| |+|++|+|+||++|||+||.|||..       +|||+.|||| ++|||+|  +|||+++++|++++.++++
T Consensus       925 a~r~~~~~-~~~~~~~r~ai~~~~k~~~~~~~~~~~~~~~~~~p~~~flei-l~e~s~k--~Qdkk~~~~~~~k~~~~~~ 1000 (1048)
T KOG2011|consen  925 AKRLALTF-GLDQLKNRFAIAVLHKKGILFALFKKDDDPSMEPPNLAFLEI-LSEFSNK--TQDKKAVLSYLEKIETDHM 1000 (1048)
T ss_pred             HHHHHhhc-CHHHHhhHHHHHHHHhhcccceeecCCCCccCCCCCchHHHH-HHHhcch--hhhhhhHhhHHHhhccccC
Confidence            99999999 9999999999999999999999962       7999999999 7999999  9999999999999999999


Q ss_pred             CCCCCCCcccHHHHHHHHhhh
Q 001345          969 MDEDPSGWRPFKSFVETLREK  989 (1096)
Q Consensus       969 ~~~~~~~W~Pl~~yr~sL~~~  989 (1096)
                      +.++ +.|.|+.+|++||.+.
T Consensus      1001 ~~~~-~~~~p~~~~~~~l~~~ 1020 (1048)
T KOG2011|consen 1001 PTSR-DPWIPLTSYLNSLEEG 1020 (1048)
T ss_pred             CCCC-CCCccccccccccccc
Confidence            8777 9999999999999763

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]	Back alignment and domain information

>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1096
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	1e-04
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 91.1 bits (225), Expect = 1e-18
 Identities = 109/715 (15%), Positives = 207/715 (28%), Gaps = 239/715 (33%)

Query: 234 DLEDMMRKIFTGLFVHRYRDI--DPNIRMSCIQSLGVWIL------SYPSFFLQDLYLKY 285
           D++DM + I +         I    +  +S    L  W L          F  + L + Y
Sbjct: 37  DVQDMPKSILSK---EEIDHIIMSKD-AVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINY 91

Query: 286 LGWTLNDKSASVRKSSVLALQNLYEVD----DNVPTLGLFTERFSNR----------MIE 331
             + ++      R+ S++    + + D    DN      F +   +R          ++E
Sbjct: 92  -KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV----FAKYNVSRLQPYLKLRQALLE 146

Query: 332 LADDIDVSV-------------AVCAIGLVKQL---------LRHQLLPDDDLGPLYDLL 369
           L    +V +              VC    V+           L++   P+  L  L  LL
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 370 ID-DPPEIRRAIGELVYDHL--IAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADP 426
              DP    R+      DH   I  + +S Q+ L             R L   + +    
Sbjct: 207 YQIDPNWTSRS------DHSSNIKLRIHSIQAEL-------------RRLLKSKPYEN-- 245

Query: 427 ILSIYVIDDVW--EYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGE 484
              + V+ +V   +   A  +  C I        L+       T+ +         A   
Sbjct: 246 --CLLVLLNVQNAKAWNAF-NLSCKI--------LLTTRFKQVTDFL--------SAATT 286

Query: 485 RIVPASDNRKPYYNKAQKEVF----ENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDI 540
             +    +         K +     +   +++ R ++   PR L           S+I  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-----------SIIA- 334

Query: 541 VMHMKLELYSLKRDEKS-FETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDS 599
                       RD  + ++    +  D          + S +  ++   AE +      
Sbjct: 335 ---------ESIRDGLATWDNWKHVNCDKL-----TTIIESSLNVLE--PAEYRKMFDRL 378

Query: 600 A--RKNLKDVEDKLIAKL-----KSAIKAVLDGDDEYSLLV-----NLKRLYELQLSKAV 647
           +    +   +   L++ +     KS +  V++   +YSL+      +   +  + L   V
Sbjct: 379 SVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 648 PIESLYEDLVMILH--------TFRNLDNEVVSFLLLNLYLY--LAWSLHSIINAETVSE 697
            +E+ Y      LH          +  D++ +    L+ Y Y  +   L +I + E    
Sbjct: 438 KLENEYA-----LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE---- 488

Query: 698 ASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSST 757
                    R TLF  +  FL+                             FR   F   
Sbjct: 489 ---------RMTLFRMV--FLD-----------------------------FR---FLEQ 505

Query: 758 KLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAID 817
           K+                       +I +  +     K YI +                D
Sbjct: 506 KIRHDST------------AWNASGSILNTLQQLKFYKPYICDN---------------D 538

Query: 818 SVPKEYLGPEIISHFVM-HGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQR 871
              +  +    I  F+     N+    K+   +      +   IF EA K+  QR
Sbjct: 539 PKYERLV--NAILDFLPKIEENLI-CSKYTDLLRIALMAEDEAIFEEAHKQV-QR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1096
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	96.62
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	96.48
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	96.39
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	96.36
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	96.32
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	96.32
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	96.27
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	96.25
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.93
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	95.9
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	95.74
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.51
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	95.31
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	95.24
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	95.24
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	95.14
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	95.06
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	94.86
3gs3_A		257	Symplekin, LD45768P; helix-turn-helix heat repeat	94.82
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	94.25
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	93.99
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	93.94
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	93.58
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	93.14
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	92.89
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	92.88
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	92.87
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	92.79
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	92.56
3o2t_A		386	Symplekin; heat repeat, scaffold, protein binding;	92.44
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	92.3
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	92.23
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	91.79
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	91.58
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	91.46
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	91.17
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	91.05
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	90.22
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	89.9
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	89.51
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	89.19
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	89.12
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	88.29
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	88.0
1qgr_A		876	Protein (importin beta subunit); transport recepto	87.8
1qgr_A		876	Protein (importin beta subunit); transport recepto	87.61
1lrv_A		244	LRV, leucine-rich repeat variant; leucine-rich rep	86.87
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	85.55
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	84.05
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	83.65
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	83.21
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	82.98
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	82.63
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	81.91
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	81.35
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	80.97
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	80.21

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

Probab=96.62  E-value=0.0099  Score=60.98  Aligned_cols=110  Identities=22%  Similarity=0.261  Sum_probs=83.9

Q ss_pred             cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345          252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE  331 (1096)
Q Consensus       252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve  331 (1096)
                      .|-+|.+|..++..||..-        ++..+..|--+|.|+++.||..++.+|..+-. +           ...+.|++
T Consensus        60 ~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-~-----------~~~~~L~~  119 (211)
T 3ltm_A           60 KDEDAWVRRAAADALGQIG--------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-E-----------RAVEPLIK  119 (211)
T ss_dssp             TCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-G-----------GGHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhhC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-H-----------HHHHHHHH
Confidence            5678999999999998642        34567777788899999999999999887742 1           13456777


Q ss_pred             hcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345          332 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD  386 (1096)
Q Consensus       332 Ma~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~  386 (1096)
                      +..|.|..|+..|+..|..+-     .++-+..+..++-|.++.||.+|..-+..
T Consensus       120 ~l~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~  169 (211)
T 3ltm_A          120 ALKDEDWFVRIAAAFALGEIG-----DERAVEPLIKALKDEDGWVRQSAADALGE  169 (211)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            778899999999999888773     23456677778888889999888877653

PyMOL of 3ltm

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1096
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 0.001
 Identities = 46/249 (18%), Positives = 90/249 (36%), Gaps = 45/249 (18%)

Query: 227  MTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYL 286
            ++  ++  L+  +  I+  L  H     +   R    + LG   L  P   L  L     
Sbjct: 914  ISSASVVGLKPYVENIWALLLKH-CECAEEGTRNVVAECLGKLTLIDPETLLPRLKGY-- 970

Query: 287  GWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIG 346
               L   S+  R S V A++    + D+   +    +      ++  +D D++V   A+ 
Sbjct: 971  ---LISGSSYARSSVVTAVKFT--ISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALV 1025

Query: 347  LVKQLLRH----------QLLPDD--------------DLGPLYDLLIDDPPEIRRAIGE 382
                   +           +LP                ++GP +   +DD  +IR+A  E
Sbjct: 1026 TFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGP-FKHTVDDGLDIRKAAFE 1084

Query: 383  LVYDHL--------IAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVID 434
             +Y  L        I +  N  + GLK    D  ++ +   L ++R  +  P   +  +D
Sbjct: 1085 CMYTLLDSCLDRLDIFEFLNHVEDGLK----DHYDIKMLTFLMLVRLSTLCPSAVLQRLD 1140

Query: 435  DVWEYMKAM 443
             + E ++A 
Sbjct: 1141 RLVEPLRAT 1149

PyMOL of d1u6gc_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1096
d1b3ua_		588	Constant regulatory domain of protein phosphatase	96.54
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.44
d1b3ua_		588	Constant regulatory domain of protein phosphatase	96.38
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.34
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	94.42
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	94.4
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	94.19
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	92.99
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	92.44
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	92.44
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	91.23
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	90.61
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	90.51
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	89.67
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	88.21
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	87.92
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	87.59
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	84.46
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	83.1
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	81.49
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	80.94
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	80.17

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0035  Score=71.05  Aligned_cols=131  Identities=11%  Similarity=0.090  Sum_probs=92.3

Q ss_pred             cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345          252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE  331 (1096)
Q Consensus       252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve  331 (1096)
                      .|-.+.+|..+++.++.-...+...|+.+....++...|.|.+..||.+++++|..|...-    +-..+...+-+.+++
T Consensus       412 ~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~----~~~~~~~~i~~~l~~  487 (588)
T d1b3ua_         412 EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF----GKEWAHATIIPKVLA  487 (588)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH----CHHHHHHHTHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHh----CcHHHHHHHHHHHHH
Confidence            5777888888888888877777777777788888888888888888888888888886421    112234456677778


Q ss_pred             hcccCchhHHHHHHHHHHHHHhc---CCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345          332 LADDIDVSVAVCAIGLVKQLLRH---QLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD  386 (1096)
Q Consensus       332 Ma~D~D~~V~v~AI~Ll~~L~~~---~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~  386 (1096)
                      |..|.++.+|..|+..+..+.+.   +...++-...+.++.-|..|.||.+|+..+..
T Consensus       488 ~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~  545 (588)
T d1b3ua_         488 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK  545 (588)
T ss_dssp             TTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            88888888888888877777653   11112223345566668888888888876653

PyMOL of d1b3ua_

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure